MSK
- About
- Browse Articles
-
Special Issues
- Pioneering strategies for overcoming bacterial drug resistance (2026)
- Advancing microbial engineering through synthetic biology (2025)
- Host-associated microbiome (2024)
- Bacterial regulatory mechanisms for the control of complex cellular mechanisms (2023)
- Two years into COVID-19 pandemic: Where are we? (2022)
- Collections
- For Contributors
- Policies
- E-Submission
- About
- Browse Articles
-
Special Issues
- Pioneering strategies for overcoming bacterial drug resistance (2026)
- Advancing microbial engineering through synthetic biology (2025)
- Host-associated microbiome (2024)
- Bacterial regulatory mechanisms for the control of complex cellular mechanisms (2023)
- Two years into COVID-19 pandemic: Where are we? (2022)
- Collections
- Policies
- For Contributors
Search
- Page Path
- HOME > Search
Article
- Lactiplantibacillus koreensis sp. nov. and Lactiplantibacillus kimchii sp. nov., isolated from kimchi, a traditional Korean fermented food
- Min Ji Lee, Jisu Lee, Sohee Nam, Mi-Ja Jung, Yeon Bee Kim, Yujin Kim, Jeong Ui Yun, Seong Woon Roh, Tae Woong Whon, Che Ok Jeon, Se Hee Lee
- J. Microbiol. 2025;63(11):e2507007. Published online November 30, 2025
- DOI: https://doi.org/10.71150/jm.2507007
- 2,429 View
- 103 Download
-
Abstract
PDF
Supplementary Material -
Two Gram-stain-positive, facultatively anaerobic, rod-shaped, and non-motile lactic acid bacterial strains, designated as strains CBA3605T and CBA3606T, were isolated from kimchi, a traditional Korean fermented food. Both strains were oxidase- and catalase-negative, non-spore-forming, non-hemolytic, and non-gas-producing. Optimal growth conditions for the two strains were observed at 30°C, pH 5.0, and 0% NaCl. The two genomes were composed of a circular chromosome and three plasmids and the DNA G + C content of 43.0%, respectively. Strains CBA3605T and CBA3606T were most closely related to Lactiplantibacillus (Lp.) pingfangensis 382-1T with 16S rRNA sequence similarity of 99.4% and 99.1%, respectively. However, the orthologous average nucleotide identities between CBA3605T and CBA3606T were 91.7%, and those with strain 382-1T were 76.9% and 76.5%, respectively. Digital DNA–DNA hybridization values between CBA3605T and CBA3606T were 45.0%, and those with strain 382-1T were 21.4% and 21.0%, respectively. The major fatty acids detected in both strains included C16:0, C18:1 ω9c, and summed features 7 (C19:1 ω7c, C19:1 ω6c, C19:0 cyclo ω10c, and/or C19:0 ω6c). The peptidoglycan of both strains CBA3605T and CBA3606T contained meso-diaminopimelic acid and was classified as A4α type (L-Lys–D-Asp). In polar lipid analyses, only strain CBA3605T contained aminophosphoglycolipid, which was absent in CBA3606T, although both strains harbored same major polar lipids (diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine). Based on phenotypic, phylogenetic, genomic, biochemical, and chemotaxonomic analyses, strains CBA3605T and CBA3606T represent two novel species of the genus Lactiplantibacillus, for which the names Lactiplantibacillus koreensis sp. nov. and Lactiplantibacillus kimchii sp. nov. are proposed, with CBA3605T (= KACC 81073BPT = JCM 37965T), and CBA3606T (= KACC 81074BPT = JCM 37966T) as the type strains.
Corrigendum
- Corrigendum: Staphylococcus parequorum sp. nov. and Staphylococcus halotolerans sp. nov., isolated from traditional Korean soybean foods
- Ju Hye Baek, Dong Min Han, Dae Gyu Choi, Chae Yeong Moon, Jae Kyeong Lee, Chul-Hong Kim, Jung-Woong Kim, Che Ok Jeon
- J. Microbiol. 2025;63(10):e2510101. Published online October 23, 2025
- DOI: https://doi.org/10.71150/jm.2510101
- Corrects: J. Microbiol 2025;63(8):e2503003
- 1,443 View
- 40 Download
- 1 Crossref
Retraction
- Retraction: Corrigendum: Staphylococcus parequorum sp. nov. and Staphylococcus halotolerans sp. nov., isolated from traditional Korean soybean foods
- Ju Hye Baek, Dong Min Han, Dae Gyu Choi, Chae Yeong Moon, Jae Kyeong Lee, Chul-Hong Kim, Jung-Woong Kim, Che Ok Jeon
- J. Microbiol. 2025;63(10):e2510100. Published online October 22, 2025
- DOI: https://doi.org/10.71150/jm.2510100
- Retracts: J. Microbiol 2025;63(9):e2509100
- 1,506 View
- 27 Download
Corrigendum
- RETRACTED ARTICLE: Corrigendum: Staphylococcus parequorum sp. nov. and Staphylococcus halotolerans sp. nov., isolated from traditional Korean soybean foods
- Ju Hye Baek, Dong Min Han, Dae Gyu Choi, Chae Yeong Moon, Jae Kyeong Lee, Chul-Hong Kim, Jung-Woong Kim, Che Ok Jeon
- J. Microbiol. 2025;63(9):e2509100. Published online September 30, 2025
- DOI: https://doi.org/10.71150/jm.2509100
- Corrects: J. Microbiol 2025;63(8):e2503003 Retraction in: J. Microbiol 2025;63(10):e2510100
- 1,347 View
- 45 Download
- 1 Web of Science
Article
- Staphylococcus parequorum sp. nov. and Staphylococcus halotolerans sp. nov., isolated from traditional Korean soybean foods
- Ju Hye Baek, Dong Min Han, Dae Gyu Choi, Chae Yeong Moon, Jae Kyeong Lee, Chul-Hong Kim, Jung-Woong Kim, Che Ok Jeon
- J. Microbiol. 2025;63(8):e2503003. Published online August 31, 2025
- DOI: https://doi.org/10.71150/jm.2503003
- Correction in: J. Microbiol 2025;63(9):e2509100 Correction in: J. Microbiol 2025;63(10):e2510101
- 3,968 View
- 135 Download
- 3 Web of Science
- 3 Crossref
-
Abstract
PDFSupplementary Material
-
Strains Mo2-6T, S9, KG4-3T, and 50Mo3-2, identified as coagulase-negative, Gram-stain-positive, halotolerant, non-motile coccoid bacteria, were isolated from traditional Korean soybean foods. Strains Mo2-6T and S9 were both catalase- and oxidase-negative, whereas KG4-3T and 50Mo3-2 were catalase-positive but oxidase-negative. The optimal growth conditions for Mo2-6T and S9 were 30°C, 2% NaCl, and pH 7.0, while KG4-3T and 50Mo3-2 grew best at 35°C, 2% NaCl, and pH 7.0. All strains contained menaquinone-7 as the predominant isoprenoid quinone, with anteiso-C15:0 and iso-C15:0 as the major cellular fatty acids (> 10%). Additionally, anteiso-C13:0 was a major fatty acid in strain KG4-3T. The DNA G + C contents of strains Mo2-6T, S9, KG4-3T, and 50Mo3-2 were 33.4%, 33.3%, 32.5%, and 32.7%, respectively. Phylogenetic analyses based on the 16S rRNA gene and whole-genome sequences revealed that strains Mo2-6T and S9, as well as KG4-3T and 50Mo3-2, formed distinct lineages within the genus Staphylococcus. Digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) analyses confirmed that strains Mo2-6T and S9, as well as KG4-3T and 50Mo3-2, belonged to the same species. Meanwhile, dDDH and ANI values between strains Mo2-6T and KG4-3T, as well as comparisons with other Staphylococcus type strains, were below the species delineation thresholds, indicating they represent novel species. Based on phenotypic, chemotaxonomic, and molecular data, we propose strain Mo2-6T as the type strain of Staphylococcus parequorum sp. nov. (=KACC 23685T =JCM 37038T) and strain KG4-3T as the type strain of Staphylococcus halotolerans sp. nov. (=KACC 23684T =JCM 37037T).
-
Citations
Citations to this article as recorded by
- Validation List no. 227: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef - Development, Validation, and Application of an Ultra-High Performance Liquid Chromatography–Diode Array Detection (UHPLC-DAD) Method to Assess Menaquinone-7 Production by Staphylococci
Francesco Bonaldo, Christine Duverger, Frédéric Leroy, Debby Mangelings
Food Analytical Methods.2026;[Epub] CrossRef -
Dokdonella aquatica sp. nov., isolated from freshwater
Jae Kyeong Lee, Chae Woo Lim, Chae Yeong Moon, Sung Chul Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef
- Validation List no. 227: valid publication of new names and new combinations effectively published outside the IJSEM
Article
- Phycobium rhodophyticola gen. nov., sp. nov. and Aliiphycobium algicola gen. nov., sp. nov., isolated from the phycosphere of marine red algae
- Jeong Min Kim, Woonhee Baek, Byeong Jun Choi, Hülya Bayburt, Jae Kyeong Lee, Sung Chul Lee, Che Ok Jeon
- J. Microbiol. 2025;63(6):e2503014. Published online June 30, 2025
- DOI: https://doi.org/10.71150/jm.2503014
- 5,064 View
- 98 Download
- 8 Web of Science
- 9 Crossref
-
Abstract
PDFSupplementary Material
-
Two Gram-stain-negative, strictly aerobic, non-motile, rod-shaped bacteria, designated D3-12ᵀ and G2-2ᵀ, were isolated from the phycosphere of marine red algae. Both strains exhibited catalase- and oxidase-positive activities. Strain D3-12ᵀ grew optimally at 30°C, pH 7.0, and 2.0–3.0% (w/v) NaCl, while strain G2-2ᵀ showed optimal growth at 30°C, pH 7.0, and 2.0% NaCl. Ubiquinone-10 was the sole respiratory quinone in both strains. The major fatty acids (> 5%) in strain D3-12ᵀ were feature 8 (C18:1 ω7c and/or C18:1 ω6c), 11-methyl-C18:1 ω7c, and C16:0, while strain G2-2ᵀ contained summed feature 8 and C16:0. The predominant polar lipids in strain D3-12ᵀ were phosphatidylcholine, phosphatidylglycerol, and phosphatidylethanolamine, whereas strain G2-2ᵀ contained phosphatidylglycerol and diphosphatidylglycerol. The genomic DNA G + C content was 59.9% for strain D3-12ᵀ and 60.2% for strain G2-2ᵀ. Phylogenetic analyses based on 16S rRNA and whole-genome sequences placed both strains into distinct lineages within the family Roseobacteraceae, separate from previously described genera. Genome-based relatedness metrics, including average nucleotide identity, digital DNA-DNA hybridization, average amino acid identity, and percentage of conserved proteins, further confirmed that these strains represent novel genera. Based on phenotypic, chemotaxonomic, and molecular characteristics, strains D3-12ᵀ and G2-2ᵀ are proposed as novel genera: Phycobium rhodophyticola gen. nov., sp. nov. (D3-12ᵀ = KACC 22712ᵀ = JCM 35528ᵀ) and Aliiphycobium algicola gen. nov., sp. nov. (G2-2ᵀ = KACC 22602ᵀ = JCM 35752ᵀ). Additionally, metabolic features relevant to interactions with marine algae, including genes associated with carbohydrate-active enzymes, vitamin biosynthesis, phenylacetic acid production, and bacterioferritin synthesis, were bioinformatically investigated.
-
Citations
Citations to this article as recorded by- Ningiella algicola sp. nov. and Marinicella algicola sp. nov., proposal of Paralteromonas gen. Nov. and Neoalteromonas gen. Nov. with reclassification of Alteromonas species, and reclassification of Methylophaga aminisulfidivorans as a later heterotypic s
Hülya Bayburt, Jeong Min Kim, Byeong Jun Choi, Jae Kyeong Lee, Che Ok Jeon
Systematic and Applied Microbiology.2026; 49(1): 126685. CrossRef -
Mucilaginibacter aureus sp. nov. and Mucilaginibacter sediminis sp. nov., isolated from wetland soil
Chae Yeong Moon, Jae Kyeong Lee, Dong Min Han, Dae Seung Lee, Byeong Jun Choi, Ju Hye Baek, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef - Robiginitalea rubriflava sp. nov. and Robiginitalea insularis sp. nov., isolated from coastal seawaters of the Yellow Sea
Seungyeop Oh, Yeonjung Lim, Meora Rajeev, Jang-Cheon Cho
Journal of Microbiology.2026; 64(2): e2512009. CrossRef -
Methylobacterium synurae sp. nov., isolated from a freshwater alga Synura petersenii
Yeong Ung Yu, Si Hyeon Lee, Che Ok Jeon, Kyung Hyun Kim
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef - Vibrio phycocola sp. nov. and Vibrio phycohabitans sp. nov., Isolated from the Phycosphere of Marine Algae
Jeong Min Kim, Byeong Jun Choi, Hülya Bayburt, Jae Kyeong Lee, Ju Hye Baek, Baolei Jia, Che Ok Jeon
Journal of Microbiology and Biotechnology.2026;[Epub] CrossRef - Aquimarina rhodophyticola sp. nov. and Aquimarina besae sp. nov., Isolated from Marine Red Algae
Jeong Min Kim, Byeong Jun Choi, Hülya Bayburt, Dong Min Han, Che Ok Jeon
Current Microbiology.2025;[Epub] CrossRef - Carotenoid-Producing Qipengyuania algicola sp. nov. and Qipengyuania rhodophyticola sp. nov., Isolated from Marine Algae, and Emended Description of the Genus Qipengyuania Xu et al. 2020
Jae Kyeong Lee, Min Woo Lee, Chae Yeong Moon, Jeong Min Kim, Hülya Bayburt, Byeong Jun Choi, Che Ok Jeon
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef -
Flagellimonas ulvae sp. nov. and Flagellimonas rhodophyticola sp. nov., isolated from marine algae
Hui Seong Won, Dong Min Han, Jeong Min Kim, Hülya Bayburt, Byeong Jun Choi, Zhe-Xue Quan, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef - Validation List no. 226: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef
- Ningiella algicola sp. nov. and Marinicella algicola sp. nov., proposal of Paralteromonas gen. Nov. and Neoalteromonas gen. Nov. with reclassification of Alteromonas species, and reclassification of Methylophaga aminisulfidivorans as a later heterotypic s
Review
- Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
- Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
- J. Microbiol. 2024;62(11):933-950. Published online October 8, 2024
- DOI: https://doi.org/10.1007/s12275-024-00172-7
- 849 View
- 15 Download
- 6 Web of Science
- 4 Crossref
-
Abstract
PDF
- Many of the world's freshwater ecosystems suffer from cyanobacteria-mediated blooms and their toxins. However, a mechanistic understanding of why and how Microcystis aeruginosa dominates over other freshwater cyanobacteria during warmer summers is lacking. This paper utilizes comparative genomics with other cyanobacteria and literature reviews to predict the gene functions and genomic architectures of M. aeruginosa based on complete genomes. The primary aim is to understand this species' survival and competitive strategies in warmer freshwater environments. M. aeruginosa strains exhibiting a high proportion of insertion sequences (~ 11%) possess genomic structures with low synteny across different strains. This indicates the occurrence of extensive genomic rearrangements and the presence of many possible diverse genotypes that result in greater population heterogeneities than those in other cyanobacteria in order to increase survivability during rapidly changing and threatening environmental challenges. Catalase-less M. aeruginosa strains are even vulnerable to low light intensity in freshwater environments with strong ultraviolet radiation. However, they can continuously grow with the help of various defense genes (e.g., egtBD, cruA, and mysABCD) and associated bacteria. The strong defense strategies against biological threats (e.g., antagonistic bacteria, protozoa, and cyanophages) are attributed to dense exopolysaccharide (EPS)-mediated aggregate formation with efficient buoyancy and the secondary metabolites of M. aeruginosa cells. Our review with extensive genome analysis suggests that the ecological vulnerability of M. aeruginosa cells can be overcome by diverse genotypes, secondary defense metabolites, reinforced EPS, and associated bacteria.
-
Citations
Citations to this article as recorded by- Rapid and selective disruption of photosystem I in toxic cyanobacteria protects aquatic ecosystem health
Wonjae Kim, Yerim Park, Yongjun Son, Nayeon Yoo, Eui-Hwan Chung, Woojun Park
Journal of Hazardous Materials.2026; 501: 140736. CrossRef - Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont
Tzipora Peretz, Esther Cattan‐Tsaushu, Chiara Conti, Benyamin Rosental, Laura Steindler, Sarit Avrani
Environmental Microbiology.2025;[Epub] CrossRef - Public goods-mediated bacterial interplay in aquatic ecosystems
Yerim Park, Wonjae Kim, Jihye Bae, Woojun Park
Water Research.2025; 287: 124310. CrossRef - Horizontal Gene Transfer and Recombination in Cyanobacteriota
Devaki Bhaya, Gabriel Birzu, Eduardo P.C. Rocha
Annual Review of Microbiology .2025; 79(1): 685. CrossRef
- Rapid and selective disruption of photosystem I in toxic cyanobacteria protects aquatic ecosystem health
Review
- Biological and Chemical Approaches for Controlling Harmful Microcystis Blooms
- Wonjae Kim, Yerim Park, Jaejoon Jung, Che Ok Jeon, Masanori Toyofuku, Jiyoung Lee, Woojun Park
- J. Microbiol. 2024;62(3):249-260. Published online April 8, 2024
- DOI: https://doi.org/10.1007/s12275-024-00115-2
- 1,365 View
- 29 Download
- 17 Web of Science
- 16 Crossref
-
Abstract
PDF
- The proliferation of harmful cyanobacterial blooms dominated by Microcystis aeruginosa has become an increasingly serious problem in freshwater ecosystems due to climate change and eutrophication. Microcystis-blooms in freshwater generate compounds with unpleasant odors, reduce the levels of dissolved O2, and excrete microcystins into aquatic ecosystems, potentially harming various organisms, including humans. Various chemical and biological approaches have thus been developed to mitigate the impact of the blooms, though issues such as secondary pollution and high economic costs have not been adequately addressed. Red clays and H2O2 are conventional treatment methods that have been employed worldwide for the mitigation of the blooms, while novel approaches, such as the use of plant or microbial metabolites and antagonistic bacteria, have also recently been proposed. Many of these methods rely on the generation of reactive oxygen species, the inhibition of photosynthesis, and/or the disruption of cellular membranes as their mechanisms of action, which may also negatively impact other freshwater microbiota. Nevertheless, the underlying molecular mechanisms of anticyanobacterial chemicals and antagonistic bacteria remain unclear. This review thus discusses both conventional and innovative approaches for the management of M. aeruginosa in freshwater bodies.
-
Citations
Citations to this article as recorded by- Rapid and selective disruption of photosystem I in toxic cyanobacteria protects aquatic ecosystem health
Wonjae Kim, Yerim Park, Yongjun Son, Nayeon Yoo, Eui-Hwan Chung, Woojun Park
Journal of Hazardous Materials.2026; 501: 140736. CrossRef - Efficient inhibition of Microcystis aeruginosa using expanded perlite sustained-release pyrogallic acid: performance studies, mechanistic insights and ecological security assessment
Yuewen Zhang, Mingjun Ma, Yujia Gao, Yu Hong, Xing Xie
Harmful Algae.2026; 155: 103093. CrossRef - HABS-BLOCKS© Reduced Harmful Algal Bloom Activity in an in-Lake Limno-Corral Mesocosm Case Study at Grand Lake St. Marys, Ohio (USA)
Stephen J. Vesper, Haley N. Hoehn, Morgan C. Grunden, Stephen J. Jacquemin
Bulletin of Environmental Contamination and Toxicology.2026;[Epub] CrossRef - Strong inhibitory effects of Desmodesmus sp. on Microcystis blooms: Potential as a biological control agent in aquaculture
Bo Yang, Yuhua Li, Zihan Wang, Zhiguang Yue, Junqi Wen, Xueqin Zhao, Hu Zhang, Xianfeng Wang, Xiufen Wang, Man Zhang
Aquaculture Reports.2025; 40: 102579. CrossRef - Field-scale artificial floating islands reduces cyanotoxin from residential raw sewage treatment basin
Zhaozhe Chen, Jiyoung Lee, Molly Mills, Abigail Volk, Ozeas S. Costa
Ecological Engineering.2025; 212: 107543. CrossRef - HABS-BLOCKS© Inhibited Microcystis and Planktothrix and Reduced Microcystin Concentrations in a Lake Water Mesocosm Study
Cameron Gastaldo, Stephen Vesper
Microorganisms.2025; 13(5): 1074. CrossRef - Synergistic radical-mediated algal inactivation via FeMoS2/ZnO-persulfate visible-light photocatalysis
Yingjian Ma, Yuxuan Tian, Ning Ding, Hong Liu
Composites Part B: Engineering.2025; 305: 112740. CrossRef - Isolation of a Novel Streptomyces sp. TH05 with Potent Cyanocidal Effects on Microcystis aeruginosa
Xuhan Wang, Siqi Zhu, Shenchen Tao, Shaoyong Zhang, Ruijun Wang, Liqin Zhang
Toxins.2025; 17(7): 354. CrossRef - Public goods-mediated bacterial interplay in aquatic ecosystems
Yerim Park, Wonjae Kim, Jihye Bae, Woojun Park
Water Research.2025; 287: 124310. CrossRef - Molecular mechanisms underlying the bloom-forming cyanobacterium Microcystis defence against predation by flagellates
Yan Chen, Xiao Zhang, Xinyang Bai, Yonglan Xu, Hangzhou Xu, Li Li
Journal of Water Process Engineering.2025; 77: 108611. CrossRef - Utilizing allelopathy from the invasive plant Solidago canadensis to control Microcystis aeruginosa blooms: An integrated metabolomic and bioassay approach
Miao Wu, Huiyuan Liu, Jiaxin Shen, Zhaohui Xie, Siyuan Yang, Jiahui Guo, Yijiang Liu, Huiting Lian, Dingli Wang
Journal of Hazardous Materials.2025; 499: 140043. CrossRef - Artificial Intelligence-Based Microfluidic Platform for Detecting Contaminants in Water: A Review
Yihao Zhang, Jiaxuan Li, Yu Zhou, Xu Zhang, Xianhua Liu
Sensors.2024; 24(13): 4350. CrossRef - Alleviation of H2O2 toxicity by extracellular catalases in the phycosphere of Microcystis aeruginosa
Yerim Park, Wonjae Kim, Yeji Cha, Minkyung Kim, Woojun Park
Harmful Algae.2024; 137: 102680. CrossRef - Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
Journal of Microbiology.2024; 62(11): 933. CrossRef - Laboratory-Simulated Inhibitory Effects of the Floating-Bed Plants on Microcystis aeruginosa and Their Microbial Communities’ Responses to Microcystins
Shuwen Zhang, Yuanpu Sha, Yuanyuan Tang, Longjie Li, Feihu Wang, Jing Dong, Xuejun Li, Yunni Gao, Xiaofei Gao, Huatao Yuan, Jingxiao Zhang
Microorganisms.2024; 12(10): 2035. CrossRef - Host-Associated Microbiome
Woo Jun Sul
Journal of Microbiology.2024; 62(3): 135. CrossRef
- Rapid and selective disruption of photosystem I in toxic cyanobacteria protects aquatic ecosystem health
Article
- Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. isolated from soil
- Kyeong Ryeol Kim† , Kyung Hyun Kim† , Shehzad Abid Khan , Hyung Min Kim , Dong Min Han , Che Ok Jeon
- J. Microbiol. 2021;59(8):709-718. Published online June 1, 2021
- DOI: https://doi.org/10.1007/s12275-021-1156-y
- 728 View
- 7 Download
- 11 Web of Science
- 11 Crossref
-
Abstract
PDF
- Two Gram-stain negative, yellow-pigmented, and mesophilic bacteria, designated strains R7T and R19T, were isolated from sandy and forest soil, South Korea, respectively. Both strains were non-motile rods showing catalase- and oxidase-positive activities. Both strains were shown to grow at 10–37°C and pH 6.0–9.0, and in the presence of 0–1.5% (w/v) NaCl. Strain R7T contained iso-C14:0, iso-C15:0, iso-C16:0, and summed feature 9 (comprising C16:0 10-methyl and/or iso-C17:1 ω9c), whereas strain R19T contained iso-C11:0 3-OH, C16:1 ω7c alcohol, iso-C11:0, iso-C15:0, iso-C16:0, and summed feature 9 (comprising C16:0 10-methyl and/or iso-C17:1 ω9c) as major cellular fatty acids (> 5%). Both strains contained ubiquinone- 8 as the sole isoprenoid quinone and phosphatidylglycerol, phosphatidylethanolamine, and an unidentified phospholipid as the major polar lipids. The DNA G + C contents of strains R7T and R19T calculated from their genomes were 66.9 mol% and 68.9 mol%, respectively. Strains R7T and R19T were most closely related to Lysobacter panacisoli C8-1T and Lysobacter niabensis GH34-4T with 98.7% and 97.8% 16S rRNA sequence similarities, respectively. Phylogenetic analyses based on 16S rRNA gene sequences showed that strains R7T and R19T formed distinct phylogenetic lineages within the genus Lysobacter. Based on phenotypic, chemotaxonomic, and molecular features, strains R7T and R19T represent novel species of the genus Lysobacter, for which the names Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. are proposed. The type strains of L. arenosi and L. solisilvae are R7T (= KACC 21663T = JCM 34257T) and R19T (= KACC 21767T = JCM 34258T), respectively.
-
Citations
Citations to this article as recorded by-
Luteimonas flava sp. nov. and Aquilutibacter rugosus gen. nov., sp. nov., isolated from freshwater environments in China and re-examining the taxonomic status of genera Luteimonas and Lysobacter
Huibin Lu, Li Chen, Yujing Wang, Peng Xing, Qinglong Wu
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Saline soil improvement promotes the transformation of microbial salt tolerance mechanisms and microbial-plant-animal ecological interactions
Keyu Yao, Guanghao Wang, Wen Zhang, Qiang Liu, Jian Hu, Mao Ye, Xin Jiang
Journal of Environmental Management.2024; 372: 123360. CrossRef - Optimal Irrigation and Fertilization Enhanced Tomato Yield and Water and Nitrogen Productivities by Increasing Rhizosphere Microbial Nitrogen Fixation
Hongfei Niu, Tieliang Wang, Yongjiang Dai, Mingze Yao, Bo Li, Jiaqi Zheng, Lizhen Mao, Mingyu Zhao, Zhanyang Xu, Feng Zhang
Agronomy.2024; 14(9): 2111. CrossRef - Short-term effect of reclaimed wastewater quality gradient on soil microbiome during irrigation
V. Moulia, N. Ait-Mouheb, G. Lesage, J. Hamelin, N. Wéry, V. Bru-Adan, L. Kechichian, M. Heran
Science of The Total Environment.2023; 901: 166028. CrossRef -
Dyadobacter pollutisoli sp. nov., isolated from plastic waste landfill soil
Kyeong Ryeol Kim, Jeong Min Kim, Jae Kyeong Lee, Dong Min Han, Lujiang Hao, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Physiological and genomic analyses of cobalamin (vitamin B12)-auxotrophy of Lysobacter auxotrophicus sp. nov., a methionine-auxotrophic chitinolytic bacterium isolated from chitin-treated soil
Akihiro Saito, Hideo Dohra, Moriyuki Hamada, Ryota Moriuchi, Yohei Kotsuchibashi, Koji Mori
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef -
Nitratireductor rhodophyticola sp. nov., isolated from marine red algae
Kyung Hyun Kim, Sylvia Kristyanto, Hyung Min Kim, Kyeong Ryeol Kim, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef - Description of Corynebacterium poyangense sp. nov., isolated from the feces of the greater white-fronted geese (Anser albifrons)
Qian Liu, Guoying Fan, Kui Wu, Xiangning Bai, Xi Yang, Wentao Song, Shengen Chen, Yanwen Xiong, Haiying Chen
Journal of Microbiology.2022; 60(7): 668. CrossRef - Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
So-Yeon Lee, Pil Soo Kim, Hojun Sung, Dong-Wook Hyun, Jin-Woo Bae
Journal of Microbiology.2022; 60(5): 469. CrossRef - Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.
Wentao Zhu, Juan Zhou, Shan Lu, Jing Yang, Xin-He Lai, Dong Jin, Ji Pu, Yuyuan Huang, Liyun Liu, Zhenjun Li, Jianguo Xu
Journal of Microbiology.2022; 60(2): 137. CrossRef - Rhodococcus oxybenzonivorans sp. nov., a benzophenone-3-degrading bacterium, isolated from stream sediment
Ju Hye Baek, Woonhee Baek, Sang Eun Jeong, Sung Chul Lee, Hyun Mi Jin, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology.2022;[Epub] CrossRef
-
Luteimonas flava sp. nov. and Aquilutibacter rugosus gen. nov., sp. nov., isolated from freshwater environments in China and re-examining the taxonomic status of genera Luteimonas and Lysobacter
Review
- Minor and major circRNAs in virus and host genomes
- Zhihao Lou , Rui Zhou , Yinghua Su , Chun Liu , Wenting Ruan , Che Ok Jeon , Xiao Han , Chun Lin , Baolei Jia
- J. Microbiol. 2021;59(3):324-331. Published online February 23, 2021
- DOI: https://doi.org/10.1007/s12275-021-1021-z
- 596 View
- 1 Download
- 9 Web of Science
- 8 Crossref
-
Abstract
PDF
- As a special type of noncoding RNA, circular RNAs (circRNAs) are prevalent in many organisms. They can serve as sponges for microRNAs and protein scaffolds, or templates for protein translation, making them linked to cellular homeostasis and disease progression. In recent years, circRNAs have been found to be abnormally expressed during the processes of viral infection and pathogenesis, and can help a virus escape the immune response of a host. Thus, they are now considered to play important functions in the invasion and development of viruses. Moreover, the potential application of circRNAs as biomarkers of viral infection or candidates for therapeutic targeting deserves consideration. This review summarizes circRNAs in the transcriptome, including their classification, production, functions, and value as biomarkers. This review paper also describes research progress on circRNAs in viral infection (mainly hepatitis B virus, HIV, and some human herpes viruses) and aims to provide new ideas for antiviral therapies targeting circRNAs.
-
Citations
Citations to this article as recorded by- Role of Perturbations of Epigenetic Processes in Cardiac Hypertrophy and Fibrotic Scarring
Brijesh Kumar Duvey, Devkant Sharma, Vishnu Mittal, Anjali Sharma
Current Cardiology Reviews.2026;[Epub] CrossRef - Combining circ_0054633 and clinical features to predict refractory Mycoplasma pneumoniae pneumonia in children
Shiyin Mu, Jia Zhai, Yongsheng Guo, Bing Huang, Yingxue Zou
Scientific Reports.2025;[Epub] CrossRef - Role and relevance of exosome-mediated epigenetic regulation in the pathogenesis, diagnosis and treatment of cardiovascular diseases (Review)
Yishuo Zhang, Shanshan Zhang, Yijing Li, Wenqi Jin, Liya Zhou, Jing Lu
Molecular Medicine Reports.2025; 33(1): 1. CrossRef - Host combats porcine reproductive and respiratory syndrome virus infection at non-coding RNAs level
Zhi Qin, Weiye Liu, Zhihua Qin, Hongliang Zhang, Xuewei Huang
Virulence.2024;[Epub] CrossRef - miRNA, lncRNA and circRNA: targeted molecules with therapeutic promises in Mycoplasma pneumoniae infection
Tian Gan, Jianwei Yu, Jun He
Archives of Microbiology.2023;[Epub] CrossRef - Circ_0138959/miR-495-3p/TRAF6 axis regulates proliferation, wound healing and osteoblastic differentiation of periodontal ligament cells in periodontitis
Wenjuan Deng, Xiaoliang Wang, Jin Zhang, Sainan Zhao
Journal of Dental Sciences.2022; 17(3): 1125. CrossRef - Epigenetic regulation in cardiovascular disease: mechanisms and advances in clinical trials
Yuncong Shi, Huanji Zhang, Suli Huang, Li Yin, Feng Wang, Pei Luo, Hui Huang
Signal Transduction and Targeted Therapy.2022;[Epub] CrossRef - Omics-based microbiome analysis in microbial ecology: from sequences to information
Jang-Cheon Cho
Journal of Microbiology.2021; 59(3): 229. CrossRef
- Role of Perturbations of Epigenetic Processes in Cardiac Hypertrophy and Fibrotic Scarring
Article
- RNase G controls tpiA mRNA abundance in response to oxygen availability in Escherichia coli
- Jaejin Lee , Dong-Ho Lee , Che Ok Jeon , Kangseok Lee
- J. Microbiol. 2019;57(10):910-917. Published online September 30, 2019
- DOI: https://doi.org/10.1007/s12275-019-9354-6
- 660 View
- 0 Download
- 11 Web of Science
- 10 Crossref
-
Abstract
PDF
- Studies have shown that many enzymes involved in glycolysis are upregulated in Escherichia coli endoribonuclease G (rng) null mutants. However, the molecular mechanisms underlying the RNase G-associated regulation of glycolysis have not been characterized. Here, we show that RNase G cleaves the 5untranslated region of triosephosphate isomerase A (tpiA) mRNA, leading to destabilization of the mRNA in E. coli. Nucleotide substitutions within the RNase G cleavage site in the genome resulted in altered tpiA mRNA stability, indicating that RNase G activity influences tpiA mRNA abundance. In addition, we observed that tpiA expression was enhanced, whereas that of RNase G was decreased, in E. coli cells grown anaerobically. Our findings suggest that RNase G negatively regulates tpiA mRNA abundance in response to oxygen availability in E. coli.
-
Citations
Citations to this article as recorded by- Metabolism-dependent succinylation governs resource allocation for antibiotic resistance
Jia-han Wu, Xuan-wei Chen, Ying-li Liu, Jia-yao Wu, Zhuang-gui Chen, Bo Peng
Science Advances.2025;[Epub] CrossRef - Relaxed Cleavage Specificity of Hyperactive Variants of Escherichia coli RNase E on RNA I
Dayeong Bae, Hana Hyeon, Eunkyoung Shin, Ji-Hyun Yeom, Kangseok Lee
Journal of Microbiology.2023; 61(2): 211. CrossRef - Transcript-specific selective translation by specialized ribosomes bearing genome-encoded heterogeneous rRNAs in V. vulnificus CMCP6
Younkyung Choi, Minju Joo, Wooseok Song, Minho Lee, Hana Hyeon, Hyun-Lee Kim, Ji-Hyun Yeom, Kangseok Lee, Eunkyoung Shin
Journal of Microbiology.2022; 60(12): 1162. CrossRef - Regulator of RNase E activity modulates the pathogenicity of Salmonella Typhimurium
Jaejin Lee, Eunkyoung Shin, Ji-Hyun Yeom, Jaeyoung Park, Sunwoo Kim, Minho Lee, Kangseok Lee
Microbial Pathogenesis.2022; 165: 105460. CrossRef - Endoribonuclease-mediated control of hns mRNA stability constitutes a key regulatory pathway for Salmonella Typhimurium pathogenicity island 1 expression
Minho Lee, Minkyung Ryu, Minju Joo, Young-Jin Seo, Jaejin Lee, Hong-Man Kim, Eunkyoung Shin, Ji-Hyun Yeom, Yong-Hak Kim, Jeehyeon Bae, Kangseok Lee, William Navarre
PLOS Pathogens.2021; 17(2): e1009263. CrossRef - Trans-acting regulators of ribonuclease activity
Jaejin Lee, Minho Lee, Kangseok Lee
Journal of Microbiology.2021; 59(4): 341. CrossRef - The effect of two ribonucleases on the production of Shiga toxin and stx-bearing bacteriophages in Enterohaemorrhagic Escherichia coli
Patricia B. Lodato
Scientific Reports.2021;[Epub] CrossRef - Regulator of ribonuclease activity modulates the pathogenicity of Vibrio vulnificus
Jaejin Lee, Eunkyoung Shin, Jaeyeong Park, Minho Lee, Kangseok Lee
Journal of Microbiology.2021; 59(12): 1133. CrossRef - An alternative miRISC targets a cancer‐associated coding sequence mutation in FOXL2
Eunkyoung Shin, Hanyong Jin, Dae‐Shik Suh, Yongyang Luo, Hye‐Jeong Ha, Tae Heon Kim, Yoonsoo Hahn, Seogang Hyun, Kangseok Lee, Jeehyeon Bae
The EMBO Journal.2020;[Epub] CrossRef - The coordinated action of RNase III and RNase G controls enolase expression in response to oxygen availability in Escherichia coli
Minho Lee, Minju Joo, Minji Sim, Se-Hoon Sim, Hyun-Lee Kim, Jaejin Lee, Minkyung Ryu, Ji-Hyun Yeom, Yoonsoo Hahn, Nam-Chul Ha, Jang-Cheon Cho, Kangseok Lee
Scientific Reports.2019;[Epub] CrossRef
- Metabolism-dependent succinylation governs resource allocation for antibiotic resistance
Article
- Paraburkholderia lacunae sp. nov., isolated from soil near an artificial pond
- Tingye Feng , Sang Eun Jeong , Jin Ju Lim , Seogang Hyun , Che Ok Jeon
- J. Microbiol. 2019;57(4):232-237. Published online January 16, 2019
- DOI: https://doi.org/10.1007/s12275-019-8463-6
- 636 View
- 1 Download
- 7 Web of Science
- 7 Crossref
-
Abstract
PDF
- A Gram-stain-negative, strictly aerobic bacterial strain, designated strain S27T, was isolated from soil near an artificial pond in South Korea. Cells were non-motile short rods showing oxidase- and catalase-positive activities. Growth of strain S27T was observed at 20–40°C (optimum, 30°C), pH 5.0–7.0 (optimum, pH 6.0), and 0–0.5% (w/v) NaCl (optimum, 0%). Ubiquinone-8 was detected as the sole respiratory quinone and the major fatty acids were C16:0, cyclo-C17:0, and cyclo- C19:0 ω8c. The G + C content of the genomic DNA was 62.4 mol%. Phosphatidylglycerol, phosphatidylethanolamine, and an unidentified aminophospholipid were detected as the major polar lipids. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain S27T formed a clearly distinct phyletic lineage from closely related Paraburkholderia species within the genus Paraburkholderia. Strain S27T was most closely related to Paraburkholderia rhynchosiae WSM3937T, Paraburkholderia ginsengiterrae DCY85T, Paraburkholderia fungorum NBRC 102489T, and Paraburkholderia graminis C4D1MT with 98.8%, 98.4%, 98.4%, and 97.7% 16S rRNA gene sequence similarities, respectively. The DNA-DNA relatedness level between strain S27T and the type strain of P. rhynchosiae was 36.8 ± 2.6%. On the basis of phenotypic, chemotaxonomic and molecular properties, strain S27T represents a novel species of the genus Paraburkholderia, for which the name Paraburkholderia lacunae sp. nov. is proposed. The type strain is S27T (KACC 19714 T = JCM 32721T).
-
Citations
Citations to this article as recorded by- Paraburkholderia suaedae sp. nov., a Potential Plant Growth-Promoting Bacterium Isolated from the Halophyte Suaeda japonica
Sunho Park, Hyunji Lee, Subin Yook, Chunghwan Baek, Jisu Kim, Seunghui Kwak, Taeho Na, Taegun Seo
Microorganisms.2025; 13(11): 2498. CrossRef - International Committee on Systematics of Prokaryotes, Subcommittee on the taxonomy of Rhizobia and Agrobacteria, minutes of the annual meeting by videoconference, 5 July 2021, followed by online discussion until 31 December 2021
Seyed Abdollah Mousavi, J. Peter W. Young
International Journal of Systematic and Evolutionary Microbiology.2022;[Epub] CrossRef - Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. isolated from soil
Kyeong Ryeol Kim, Kyung Hyun Kim, Shehzad Abid Khan, Hyung Min Kim, Dong Min Han, Che Ok Jeon
Journal of Microbiology.2021; 59(8): 709. CrossRef - The history and distribution of nodulating Paraburkholderia, a potential inoculum for Fynbos forage species
Chrizelle W. Beukes, Stephanus N. Venter, Emma T. Steenkamp
Grass and Forage Science.2021; 76(1): 10. CrossRef - International Committee on Systematics of Prokaryotes Subcommittee on the Taxonomy of Rhizobia and Agrobacteria Minutes of the closed meeting by videoconference, 17 July 2019
Philippe de Lajudie, J. Peter W. Young
International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3563. CrossRef - Flavihumibacter soli sp. nov., Isolated from Soil
Ye Lin Seo, Jaejoon Jung, Shehzad Abid Khan, Kyung Hyun Kim, Che Ok Jeon
Current Microbiology.2020; 77(10): 3179. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2019;[Epub] CrossRef
- Paraburkholderia suaedae sp. nov., a Potential Plant Growth-Promoting Bacterium Isolated from the Halophyte Suaeda japonica
Research Support, Non-U.S. Gov't
- Genome sequence analysis of potential probiotic strain Leuconostoc lactis EFEL005 isolated from kimchi
- Jin Seok Moon , Hye Sun Choi , So Yeon Shin , Sol Ji Noh , Che Ok Jeon , Nam Soo Han
- J. Microbiol. 2015;53(5):337-342. Published online May 3, 2015
- DOI: https://doi.org/10.1007/s12275-015-5090-8
- 694 View
- 0 Download
- 15 Crossref
-
Abstract
PDF
- Leuconostoc lactis EFEL005 (KACC 91922) isolated from kimchi showed promising probiotic attributes; resistance against acid and bile salts, absence of transferable genes for antibiotic resistance, broad utilization of prebiotics, and no hemolytic activity. To expand our understanding of the species, we generated a draft genome sequence of the strain and analyzed its genomic features related to the aforementioned probiotic properties. Genome assembly resulted in 35 contigs, and the draft genome has 1,688,202 base pairs (bp) with a G+C content of 43.43%, containing 1,644 protein-coding genes and 50 RNA genes. The average nucleotide identity analysis showed high homology (≥ 96%) to the type strain L. lactis KCTC3528, but low homology (≤ 95%) to L. lactis KCTC3773 (formerly L. argentinum). Genomic analysis revealed the presence of various genes for sucrose metabolism (glucansucrases, invertases, sucrose phosphorylases, and mannitol dehydrogenase), acid tolerance (F1F0 ATPases, cation transport ATPase, branched-chain amino acid permease, and lysine decarboxylase), vancomycin response regulator, and antibacterial peptide (Lactacin F). No gene for production of biogenic amines (histamine and tyramine) was found. This report will facilitate the understanding of probiotic properties of this strain as a starter for fermented foods.
-
Citations
Citations to this article as recorded by- Novel method for screening probiotic candidates tolerant to human gastrointestinal stress
Takuma Kozawa, Hideki Aoyagi
Journal of Microbiological Methods.2024; 222: 106945. CrossRef - A comprehensive review on probiotics and their use in aquaculture: Biological control, efficacy, and safety through the genomics and wet methods
Matteo Calcagnile, Salvatore Maurizio Tredici, Pietro Alifano
Heliyon.2024; 10(24): e40892. CrossRef - Isolation of Lactic Acid Bacteria from the Feces of Ring-tailed Coati (Nasua nasua), Biochemical and Fermentative Aspects Related to Coffee Fermentation
R. M. Pinillos-Miñano, L. M. I. Rodriguez-Portilla, B. A. Hatta-Sakoda, W. D. Estela-Escalante
Applied Biochemistry and Microbiology.2022; 58(S1): S102. CrossRef - Genomic and Phenotypic Evaluation of Potential Probiotic Pediococcus Strains with Hypocholesterolemic Effect Isolated from Traditional Fermented Food
Shadi Pakroo, Armin Tarrah, Jacopo Bettin, Viviana Corich, Alessio Giacomini
Probiotics and Antimicrobial Proteins.2022; 14(6): 1042. CrossRef - Exploring Antibiotic Resistance Diversity in Leuconostoc spp. by a Genome-Based Approach: Focus on the lsaA Gene
Elisa Salvetti, Ilenia Campedelli, Ilaria Larini, Giada Conedera, Sandra Torriani
Microorganisms.2021; 9(3): 491. CrossRef - ODFM, an omics data resource from microorganisms associated with fermented foods
Tae Woong Whon, Seung Woo Ahn, Sungjin Yang, Joon Yong Kim, Yeon Bee Kim, Yujin Kim, Ji-Man Hong, Hojin Jung, Yoon-E Choi, Se Hee Lee, Seong Woon Roh
Scientific Data.2021;[Epub] CrossRef - Unraveling microbial fermentation features in kimchi: from classical to meta-omics approaches
Se Hee Lee, Tae Woong Whon, Seong Woon Roh, Che Ok Jeon
Applied Microbiology and Biotechnology.2020; 104(18): 7731. CrossRef - Development of Leuconostoc lactis–Specific Quantitative PCR and its Application for Identification and Enumeration in Fermented Foods
Seul-Ah Kim, Jae-Han Bae, Hyunbin Seong, Nam Soo Han
Food Analytical Methods.2020; 13(4): 992. CrossRef - Functional Identification of the Dextransucrase Gene of Leuconostoc mesenteroides DRP105
Renpeng Du, Zhijiang Zhou, Ye Han
International Journal of Molecular Sciences.2020; 21(18): 6596. CrossRef - Effect of potential probiotic Leuconostoc mesenteroides FB111 in prevention of cholesterol absorption by modulating NPC1L1/PPARα/SREBP-2 pathways in epithelial Caco-2 cells
Bao Le, Seung-Hwan Yang
International Microbiology.2019; 22(2): 279. CrossRef - Improvement of the Sensory Characteristics of Goat Milk Yogurt
Diana De Santis, Giuseppina Giacinti, Giulia Chemello, Maria Teresa Frangipane
Journal of Food Science.2019; 84(8): 2289. CrossRef -
Lactobacillus allii sp. nov. isolated from scallion kimchi
Min Young Jung, Se Hee Lee, Moeun Lee, Jung Hee Song, Ji Yoon Chang
International Journal of Systematic and Evolutionary Microbiology .2017; 67(12): 4936. CrossRef - Genomic Analysis of Vulcanisaeta thermophila Type Strain CBA1501T Isolated from Solfataric Soil
Joon Yong Kim, Kyung June Yim, Hye Seon Song, Yeon Bee Kim, Dong-Gi Lee, Joseph Kwon, Kyung-Seo Oh, Seong Woon Roh
Frontiers in Microbiology.2016;[Epub] CrossRef - Immunomodulatory effects of Leuconostoc citreum EFEL2061 isolated from kimchi, a traditional Korean food, on the Th2 type-dominant immune response in vitro and in vivo
Hee Kang, Jin Seok Moon, Mi-Gi Lee, Nam Soo Han
Journal of Functional Foods.2016; 20: 79. CrossRef - Systems Biology of Microbial Exopolysaccharides Production
Ozlem Ates
Frontiers in Bioengineering and Biotechnology.2015;[Epub] CrossRef
- Novel method for screening probiotic candidates tolerant to human gastrointestinal stress
Research Support, Non-U.S. Gov't
- Deodorization of Pig Slurry and Characterization of Bacterial Diversity Using 16S rDNA Sequence Analysis
- Ok-Hwa Hwang , Sebastian Raveendar , Young-Ju Kim , Ji-Hun Kim , Tae-Hun Kim , Dong-Yoon Choi , Che Ok Jeon , Sung-Back Cho , Kyung-Tai Lee
- J. Microbiol. 2014;52(11):918-929. Published online October 31, 2014
- DOI: https://doi.org/10.1007/s12275-014-4251-5
- 545 View
- 0 Download
- 8 Crossref
-
Abstract
PDF
- The concentration of major odor-causing compounds including phenols, indoles, short-chain fatty acids (SCFAs) and branched chain fatty acids (BCFAs) in response to the addition of powdered horse radish (PHR) and spent mushroom compost (SMC) was compared with control nontreated slurry (CNS) samples. A total of 97,465 rDNAs sequence reads were generated from three different samples (CNS, n = 2; PHR, n = 3; SMC, n = 3) using bar-coded pyrosequencing. The number of operational taxonomic units (OTUs) was lower in the PHR slurry compared with the other samples. A total of 11 phyla were observed in the slurry samples, while the phylogenetic analysis revealed that the slurry microbiome predominantly comprised members of the Bacteroidetes, Firmicutes, and Proteobacteria phyla. The rarefaction analysis showed the bacterial species richness varied among the treated samples. Overall, at the OTU level, 2,558 individual genera were classified, 276 genera were found among the three samples, and 1,832 additional genera were identified in the individual samples. A principal component analysis revealed the differences in microbial communities among the CNS, PHR, and SMC pig slurries. Correlation of the bacterial community structure with the Kyoto Encyclopedia of Genes and Genomes (KEGG) predicted pathways showed that the treatments altered the metabolic capabilities of the slurry microbiota. Overall, these results demonstrated that the PHR and SMC treatments significantly reduced the malodor compounds in pig slurry (P < 0.05).
-
Citations
Citations to this article as recorded by- Impact of Bacillus subtilis on manure solids, odor, and microbiome
Okhwa Hwang, Yeo-Myeong Yun, Steven Trabue
Journal of Environmental Management.2023; 333: 117390. CrossRef - Isolation and identification of proteolytic bacteria from pig sludge and protease activity determination
S Hamdani, N Asstiyani, D Astriany, M Singgih, S Ibrahim
IOP Conference Series: Earth and Environmental Science.2019; 230: 012095. CrossRef - The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala
Xiaoyun Wang, Qiao Gao, Wanqiang Wang, Xiaoping Wang, Chaoliang Lei, Fen Zhu
BMC Microbiology.2018;[Epub] CrossRef - Bacterial community composition and diversity uncovered in experimental sludge treatment reed bed systems with different swine slurry hydraulic loadings
Paula Arroyo, Luis E. Sáenz de Miera, Jorge Falagán, Gemma Ansola
Ecological Engineering.2018; 123: 175. CrossRef - Effect of pH on soil bacterial diversity
Sun-Ja Cho, Mi-Hee Kim, Young-Ok Lee
Journal of Ecology and Environment.2016;[Epub] CrossRef - Indole: a signaling molecule or a mere metabolic byproduct that alters bacterial physiology at a high concentration?
Jisun Kim, Woojun Park
Journal of Microbiology.2015; 53(7): 421. CrossRef - Application of Next Generation Sequencing to Investigate Microbiome in the Livestock Sector
Minseok Kim, Youlchang Baek, Young Kyoon Oh
Journal of Animal Environmental Science.2015; 21(3): 93. CrossRef - Survival of free-living Acholeplasma in aerated pig manure slurry revealed by 13C-labeled bacterial biomass probing
Dai Hanajima, Tomo Aoyagi, Tomoyuki Hori
Frontiers in Microbiology.2015;[Epub] CrossRef
- Impact of Bacillus subtilis on manure solids, odor, and microbiome
Research Support, Non-U.S. Gov't
- Effect of Fumarate Reducing Bacteria on In Vitro Rumen Fermentation, Methane Mitigation and Microbial Diversity
- Lovelia Mamuad , Seon Ho Kim , Chang Dae Jeong , Yeon Jae Choi , Che Ok Jeon , Sang-Suk Lee
- J. Microbiol. 2014;52(2):120-128. Published online February 1, 2014
- DOI: https://doi.org/10.1007/s12275-014-3518-1
- 712 View
- 4 Download
- 27 Crossref
-
Abstract
PDF
- The metabolic pathways involved in hydrogen (H2) production, utilization and the activity of methanogens are the important factors that should be considered in controlling methane (CH4) emissions by ruminants. H2 as one of the major substrate for CH4 production is therefore should be controlled. One of the strategies on reducing CH4 is through the use of hydrogenotrophic microorganisms such as fumarate reducing bacteria. This study determined the effect of fumarate reducing bacteria, Mitsuokella jalaludinii, supplementation on in vitro rumen fermentation, CH4 production, diversity and quantity. M. jalaludinii significantly reduced CH4 at 48 and 72 h of incubation and significantly increased succinate at 24 h. Although not significantly different, propionate was found to be highest in treatment containing M. jalaludinii at 12 and 48 h of incubation. These results suggest that supplementation of fumarate reducing bacteria to ruminal fermentation reduces CH4 production and quantity, increases succinate and changes the rumen microbial diversity.
-
Citations
Citations to this article as recorded by- Germination-induced nutrient remodeling in wheat: linking molecular structural changes to rumen microbial community dynamics and metabolic shifts
Jing Ma, Fangshu Di, Xi Wang, Yaqiu Lin, Shenglan Guo, Haitao Shi
Chemical and Biological Technologies in Agriculture.2026;[Epub] CrossRef - Effects of Isoacid Supplementation on In Vitro Rumen Fermentation, Nutrient Degradability and Bacterial Community Diversity Using Corn Silage–Highland Barley Straw as Substrates in Yaks
Can Luo, Fei Jiang, Anyi Zhong, Xinjue He, Xi Liu, Yanling Huang, Yanhua Gao
Microorganisms.2026; 14(3): 692. CrossRef - Unraveling the multifaceted influences of environmental conditions and additives on highland oat silage: a comprehensive study of nutritional, molecular, and ruminal degradation properties
Jing Ma, Chunyi Liu, Xiangzi Wu, Xi Wang, Hui Wang, Chunhua Guo, Haitao Shi
Journal of the Science of Food and Agriculture.2025; 105(14): 8283. CrossRef - Red seaweed supplementation suppresses methanogenesis in the rumen, revealing potentially advantageous traits among hydrogenotrophic bacteria
Pengfan Zhang, Breanna Roque, Pedro Romero, Nicole Shapiro, Emiley Eloe-Fadrosh, Ermias Kebreab, Spencer Diamond, Matthias Hess
Microbiome.2025;[Epub] CrossRef - Distinct microbial hydrogen and reductant disposal pathways explain interbreed variations in ruminant methane yield
Qiushuang Li, Zhiyuan Ma, Jiabin Huo, Xiumin Zhang, Rong Wang, Shizhe Zhang, Jinzhen Jiao, Xiyang Dong, Peter H Janssen, Emilio M Ungerfeld, Chris Greening, Zhiliang Tan, Min Wang
The ISME Journal.2024;[Epub] CrossRef - The Effect of Direct-Fed Microbials on In-Vitro Rumen Fermentation of Grass or Maize Silage
Rajan Dhakal, Giuseppe Copani, Bruno Ieda Cappellozza, Nina Milora, Hanne Helene Hansen
Fermentation.2023; 9(4): 347. CrossRef - Alternative pathways for hydrogen sink originated from the ruminal fermentation of carbohydrates: Which microorganisms are involved in lowering methane emission?
Ana Margarida Pereira, Maria de Lurdes Nunes Enes Dapkevicius, Alfredo E. S. Borba
Animal Microbiome.2022;[Epub] CrossRef - Hydrogenosome, Pairing Anaerobic Fungi and H2-Utilizing Microorganisms Based on Metabolic Ties to Facilitate Biomass Utilization
Jing Ma, Pei Zhong, Yuqi Li, Zhanying Sun, Xiaoni Sun, Min Aung, Lizhuang Hao, Yanfen Cheng, Weiyun Zhu
Journal of Fungi.2022; 8(4): 338. CrossRef - Dietary wheat and reduced methane yield are linked to rumen microbiome changes in dairy cows
Keith W. Savin, Peter J. Moate, S. R. O. Williams, Carolyn Bath, Joanne Hemsworth, Jianghui Wang, Doris Ram, Jody Zawadzki, Simone Rochfort, Benjamin G. Cocks, James E. Wells
PLOS ONE.2022; 17(5): e0268157. CrossRef - Effect of Autochthonous Nepalese Fruits on Nutrient Degradation, Fermentation Kinetics, Total Gas Production, and Methane Production in In-Vitro Rumen Fermentation
Rajan Dhakal, Manuel Gonzalez Ronquillo, Einar Vargas-Bello-Pérez, Hanne Helene Hansen
Animals.2022; 12(17): 2199. CrossRef - Reducing Enteric Methanogenesis through Alternate Hydrogen Sinks in the Rumen
Prasanta Kumar Choudhury, Rajashree Jena, Sudhir Kumar Tomar, Anil Kumar Puniya
Methane.2022; 1(4): 320. CrossRef - Methane Emissions Regulated by Microbial Community Response to the Addition of Monensin and Fumarate in Different Substrates
Dan Xue, Huai Chen, Xiaolin Luo
Applied Sciences.2021; 11(14): 6282. CrossRef - Different milk replacers alter growth performance and rumen bacterial diversity of dairy bull calves
Yangdong Zhang, Jing Cheng, Nan Zheng, Yuanqing Zhang, Di Jin
Livestock Science.2020; 231: 103862. CrossRef - Metabolic Hydrogen Flows in Rumen Fermentation: Principles and Possibilities of Interventions
Emilio M. Ungerfeld
Frontiers in Microbiology.2020;[Epub] CrossRef - Rumen fermentation and microbial community composition influenced by live Enterococcus faecium supplementation
Lovelia L. Mamuad, Seon Ho Kim, Ashraf A. Biswas, Zhongtang Yu, Kwang-Keun Cho, Sang-Bum Kim, Kichoon Lee, Sang Suk Lee
AMB Express.2019;[Epub] CrossRef - Advanced estimation and mitigation strategies: a cumulative approach to enteric methane abatement from ruminants
Mahfuzul Islam, Sang-Suk Lee
Journal of Animal Science and Technology.2019; 61(3): 122. CrossRef - Recent insight and future techniques to enhance rumen fermentation in dairy goats
Lovelia L. Mamuad, Sung Sill Lee, Sang Suk Lee
Asian-Australasian Journal of Animal Sciences.2019; 32(8): 1321. CrossRef - Effects of illite supplementation on in vitro and in vivo rumen fermentation, microbial population and methane emission of Hanwoo steers fed high concentrate diets
Ashraf A. Biswas, Sung‐Sill Lee, Lovelia L. Mamuad, Seon‐Ho Kim, Yeon‐Jae Choi, Chanhee Lee, Kichoon Lee, Gui‐Seck Bae, Sang‐Suk Lee
Animal Science Journal.2018; 89(1): 114. CrossRef - Effect of different concentrate diet levels on rumen fluid inoculum used for determination of in vitro rumen fermentation, methane concentration, and methanogen abundance and diversity
Seon-Ho Kim, Lovelia L. Mamuad, Eun-Joong Kim, Ha-Guyn Sung, Gui-Seck Bae, Kwang-Keun Cho, Chanhee Lee, Sang-Suk Lee
Italian Journal of Animal Science.2018; 17(2): 359. CrossRef - Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review
P Chellapandi, M Bharathi, C Sangavai, R Prathiviraj
Veterinary and Animal Science.2018; 6: 86. CrossRef - Rumen prokaryotic communities of ruminants under different feeding paradigms on the Qinghai-Tibetan Plateau
Dan Xue, Huai Chen, Xinquan Zhao, Shixiao Xu, Linyong Hu, Tianwei Xu, Lin Jiang, Wei Zhan
Systematic and Applied Microbiology.2017; 40(4): 227. CrossRef - Increased propionate concentration inLactobacillus mucosae-fermented wet brewers grains and duringin vitrorumen fermentation
L.L. Mamuad, S.H. Kim, Y.J. Choi, A.P. Soriano, K.K. Cho, K. Lee, G.S. Bae, S.S. Lee
Journal of Applied Microbiology.2017; 123(1): 29. CrossRef - Use of Lysozyme as a Feed Additive on In vitro Rumen Fermentation and Methane Emission
Ashraf A. Biswas, Sung Sill Lee, Lovelia L. Mamuad, Seon-Ho Kim, Yeon-Jae Choi, Gui-Seck Bae, Kichoon Lee, Ha-Guyn Sung, Sang-Suk Lee
Asian-Australasian Journal of Animal Sciences.2016; 29(11): 1601. CrossRef - Quantification of organic acids in ruminal in vitro batch culture fermentation supplemented with fumarate using a herb mix as a substrate
J. Pisarčíková, Z. Váradyová, K. Mihaliková, S. Kišidayová, J. Plaizier
Canadian Journal of Animal Science.2016; 96(1): 60. CrossRef - Rumen fermentation and performance of Hanwoo steers fed total mixed ration with Korean rice wine residue
Chang-Dae Jeong, Lovelia L. Mamuad, Jong Youl Ko, Ha Guyn Sung, Keun Kyu Park, Yoo Kyung Lee, Sang-Suk Lee
Journal of Animal Science and Technology.2016;[Epub] CrossRef - Limits to Dihydrogen Incorporation into Electron Sinks Alternative to Methanogenesis in Ruminal Fermentation
Emilio M. Ungerfeld
Frontiers in Microbiology.2015;[Epub] CrossRef - Effect of Soybean Meal and Soluble Starch on Biogenic Amine Production and Microbial Diversity Using In vitro Rumen Fermentation
Chang-Dae Jeong, Lovelia L. Mamuad, Seon-Ho Kim, Yeon Jae Choi, Alvin P. Soriano, Kwang Keun Cho, Che-Ok Jeon, Sung Sil Lee, Sang-Suk Lee
Asian-Australasian Journal of Animal Sciences.2014; 28(1): 50. CrossRef
- Germination-induced nutrient remodeling in wheat: linking molecular structural changes to rumen microbial community dynamics and metabolic shifts
Research Support, Non-U.S. Gov't
- Diversity of the Bacterial Community in the Rice Rhizosphere Managed Under Conventional and No-tillage Practices
- Zubair Aslam , Muhammad Yasir , Hwan Sik Yoon , Che Ok Jeon , Young Ryun Chung
- J. Microbiol. 2013;51(6):747-756. Published online December 19, 2013
- DOI: https://doi.org/10.1007/s12275-013-2528-8
- 724 View
- 0 Download
- 28 Crossref
-
Abstract
PDF
-
Bacterial diversity in the rice rhizosphere at different rice
growth stages, managed under conventional and no-tillage
practices, was explored using a culture-based approach.
Actinobacteria are among the bacterial phyla abundant in
the rice rhizosphere. Their diversity was further examined by
constructing metagenomic libraries based on the 16S rRNA
gene, using actinobacterial- and streptomycete-specific polymerase
chain reaction (PCR) primers. The study included
132 culturable strains and 125 clones from the 16S rRNA gene
libraries. In conventional tillage, there were 38% Proteobacteria,
22% Actinobacteria, 33% Firmicutes, 5% Bacteroidetes,
and 2% Acidobacteria, whereas with no-tillage management
there were 63% Proteobacteria, 24% Actinobacteria, 6% Firmicutes,
and 8% Bacteroidetes as estimated using the culturedependent
method
during the four stages of rice cultivation. Principal coordinates analysis was used to cluster the bacterial communities along axes of maximal variance. The different growth stages of rice appeared to influence the rhizosphere bacterial profile for both cultivation practices. Novel clones with low similarities (89–97%) to Actinobacteria and Streptomyces were retrieved from both rice fields by screening the 16S rRNA gene libraries using actinobacterial- and streptomycete-specific primers. By comparing the actinobacterial community retrieved by culture-dependent and molecular methods, it was clear that a more comprehensive assessment of microbial diversity in the rice rhizosphere can be obtained using a combination of both techniques than by using either method alone. We also succeeded in culturing a number of bacteria that were previously described as unculturable. These were in a phylogenetically deep lineage when compared with related cultivable genera. -
Citations
Citations to this article as recorded by- Endophytic drought-tolerant bacterial community dynamics across contrasting agroclimatic zones
Lopamudra Hazra, Sudipto Biswas, Kunal Kumar Saha, Sumit Chatterjee, Subhajit Dutta, Subhrangshu Mandal
Letters in Applied Microbiology.2026;[Epub] CrossRef - Synergistic interplay of microbial probiotics in rice rhizosphere: A sustainable strategy for bacterial blight management through microbiome engineering
Syed Atif Hasan Naqvi, Ateeq Ur Rehman, Ummad Ud Din Umar
Physiological and Molecular Plant Pathology.2025; 136: 102568. CrossRef - Research into the Mechanical Tillage Regulation Mechanisms of the Soil Structure in Black Soil Paddy Fields
Qiuju Wang, Bingqi Bai, Yuping Liu, Baoguang Wu, Jingyang Li, Jiahe Zou
Agriculture.2025; 15(11): 1145. CrossRef - Unusual Morphological Changes of a Novel Wrinkled Bacterium Isolated from the Rice Rhizosphere Under Nutrient Stress
Young Ryun Chung, Jung Eun Lee, Zubair Aslam, Eu Jin Chung, Kwang Hee Lee, Byung Ho Kang, Ajmal Khan, Sarbjeet Niraula, Woo-Suk Chang
Life.2025; 15(9): 1337. CrossRef - Impact of Rhizospheric Microbiome on Rice Cultivation
Md Majharul Islam, Santosh Kumar Jana, Subhadipa Sengupta, Sukhendu Mandal
Current Microbiology.2024;[Epub] CrossRef - Profiling of rhizosphere bacterial community associated with sugarcane and banana rotation system
Ziting Yao, Abdullah Khan, Yuzhi Xu, Kaiyuan Pan, Muqing Zhang
Chemical and Biological Technologies in Agriculture.2024;[Epub] CrossRef - Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review
Wen Chen, Dixi Modi, Adeline Picot
Plants.2023; 12(14): 2736. CrossRef - Microbial Community Shifts with Soil Properties and Enzyme Activities in Inter-/Mono-Cropping Systems in Response to Tillage
Peina Lu, Cai Zhao, Wen Yin, Falong Hu, Zhilong Fan, Aizhong Yu, Hong Fan
Agronomy.2023; 13(11): 2707. CrossRef - Long-term agro-management strategies shape soil bacterial community structure in dryland wheat systems
Shikha Singh, Surendra Singh, Scott B. Lukas, Stephen Machado, Amin Nouri, Francisco Calderon, Elizabeth R. Rieke, Shannon B. Cappellazzi
Scientific Reports.2023;[Epub] CrossRef - Microbial Inoculations Promoted the Rice Plant Growth by Regulating the Root-Zone Bacterial Community Composition and Potential Function
Yifeng Gui, Caihong Gu, Xian Xiao, Yuexiang Gao, Yuan Zhao
Journal of Soil Science and Plant Nutrition.2023; 23(4): 5222. CrossRef - Study of Rhizosphere Microbial Community Structures of Asian Wild and Cultivated Rice Showed That Cultivated Rice Had Decreased and Enriched Some Functional Microorganisms in the Process of Domestication
Jianfeng Zhang, Zongmu Yao, Yalin Chen, Jiafan Zhang, Shouyang Luo, Chunjie Tian, Lei Tian
Diversity.2022; 14(2): 67. CrossRef - Diversity of rice rhizosphere microorganisms under different fertilization modes of slow-release fertilizer
Yulin Chen, Panfeng Tu, Yibin Yang, Xinhai Xue, Zihui Feng, Chenxin Dan, Fengxian Cheng, Yifan Yang, Lansheng Deng
Scientific Reports.2022;[Epub] CrossRef - Dynamic change in bacterial communities in the integrated rice–fish farming system in Sleman, Yogyakarta, Indonesia
Afri Herlambang, Murwantoko Murwantoko, Indah Istiqomah
Aquaculture Research.2021; 52(11): 5566. CrossRef - No tillage and residue mulching method on bacterial community diversity regulation in a black soil region of Northeastern China
Lijun Cai, Zhenhua Guo, Jingtao Zhang, Zhijia Gai, Jingqi Liu, Qingying Meng, Xiaohu Liu, Dafeng Hui
PLOS ONE.2021; 16(9): e0256970. CrossRef - Soil Bacterial Diversity and Potential Functions Are Regulated by Long-Term Conservation Tillage and Straw Mulching
Chang Liu, Lingling Li, Junhong Xie, Jeffrey A. Coulter, Renzhi Zhang, Zhuzhu Luo, Liqun Cai, Linlin Wang, Subramaniam Gopalakrishnan
Microorganisms.2020; 8(6): 836. CrossRef - Conservation tillage increased soil bacterial diversity and improved soil nutrient status on the Loess Plateau in China
Hao Wang, Shulan Wang, Rui Wang, Xiaoli Wang, Jun Li
Archives of Agronomy and Soil Science.2020; 66(11): 1509. CrossRef - Changes in soil organic carbon fractions and bacterial community composition under different tillage and organic fertiliser application in a maize−wheat rotation system
Daijing Zhang, Xueqian Yang, Yanjie Wang, Jiejing Zong, Jianhui Ma, Chunxi Li
Acta Agriculturae Scandinavica, Section B — Soil & Plant Science.2020; 70(6): 457. CrossRef - Effects of tillage practices on soil microbiome and agricultural parameters
Judith Kraut-Cohen, Avihai Zolti, Liora Shaltiel-Harpaz, Eli Argaman, Rachel Rabinovich, Stefan J. Green, Dror Minz
Science of The Total Environment.2020; 705: 135791. CrossRef - Cultivated rice rhizomicrobiome is more sensitive to environmental shifts than that of wild rice in natural environments
Shangqi Xu, Lei Tian, Chunling Chang, Xiujun Li, Chunjie Tian
Applied Soil Ecology.2019; 140: 68. CrossRef - Differences in rice rhizosphere bacterial community structure by application of lignocellulolytic plant-probiotic bacteria with rapid composting traits
Thounaojam Nevita, G.D. Sharma, Piyush Pandey
Ecological Engineering.2018; 120: 209. CrossRef - Bacterial diversity of the rhizosphere and nearby surface soil of rice (Oryza sativa) growing in the Camargue (France)
Jorge R. Osman, Gustavo Fernandes, Michael S. DuBow
Rhizosphere.2017; 3: 112. CrossRef - Seasonal and Interannual Fluctuation of the Microbial Soil Community in a Maize Field under Long-Term Conservation Agriculture Management
Manuel Ramírez, Antonio López-Piñeiro, David Peña, José Rato Nunes, Ángel Albarrán, Ana Muñoz, José Gama, Luis Loures
Sustainability.2017; 9(5): 778. CrossRef - Microbiotes et métagénomique
Jean Weissenbach, Abdelghani Sghir
médecine/sciences.2016; 32(11): 937. CrossRef - Distribution and activity of the anaerobic methanotrophic community in a nitrogen-fertilized Italian paddy soil
A. Vaksmaa, C. Lüke, T. van Alen, G. Valè, E. Lupotto, M. S. M Jetten, K. F. Ettwig, Gary King
FEMS Microbiology Ecology.2016; 92(12): fiw181. CrossRef - Biological Control of Rice Bakanae by an Endophytic Bacillus oryzicola YC7007
Mohammad Tofajjal Hossain, Ajmal Khan, Eu Jin Chung, Md. Harun-Or Rashid, Young Ryun Chung
The Plant Pathology Journal.2016; 32(3): 228. CrossRef - Roseomonas oryzicola sp. nov., isolated from the rhizosphere of rice (Oryza sativa L.)
Eu Jin Chung, Hwan Sik Yoon, Kyung Hyun Kim, Che Ok Jeon, Young Ryun Chung
International Journal of Systematic and Evolutionary Microbiology.2015; 65(Pt_12): 4839. CrossRef - Role of root microbiota in plant productivity
A. Tkacz, P. Poole
Journal of Experimental Botany.2015; 66(8): 2167. CrossRef - Impact of plant development on the rhizobacterial population of Arachis hypogaea: a multifactorial analysis
Shyamalina Haldar, Sanghamitra Sengupta
Journal of Basic Microbiology.2015; 55(7): 922. CrossRef
- Endophytic drought-tolerant bacterial community dynamics across contrasting agroclimatic zones
Research Support, Non-U.S. Gov't
- Characterization, Metabolites and Gas Formation of Fumarate Reducing Bacteria Isolated from Korean Native Goat (Capra hircus coreanae)
- Lovelia L. Mamuad , Seon Ho Kim , Sung Sil Lee , Kwang Keun Cho , Che Ok Jeon , Sang-Suk Lee
- J. Microbiol. 2012;50(6):925-931. Published online December 30, 2012
- DOI: https://doi.org/10.1007/s12275-012-2497-3
- 422 View
- 0 Download
- 12 Crossref
-
Abstract
PDF
- Fumarate reducing bacteria, able to convert fumarate to succinate, are possible to use for the methane reduction in rumen because they can compete for H2 with methanogens. In this, we isolated fumarate reducing bacteria from a rumen of Korean native goat and characterized their molecular properties [fumarate reductase A gene (frdA)], fumarate reductase activities, and productions of volatile fatty acids and gas. Eight fumarate reducing bacteria belonging to Firmicutes were isolated from rumen fluid samples of slaughtered Korean black goats and characterized their phylogenetic positions based on 16S rRNA gene sequences. PCR based analyses showed that only one strain, closely related to Mitsuokella jalaludinii, harbored frdA. The growths of M. jalaludinii and Veillonella parvula strains were tested for different media. Interestingly, M. jalaludinii grew very well in the presence of hydrogen alone, while V. parvula grew well in response of fumarate and fumarate plus hydrogen. M. jalaludinii produced higher levels of lactate (P≤0.05) than did V. parvula. Additionally, M. jalaludinii produced acetate, but not butyrate, whereas V. parvula produced butyrate, not acetate. The fumarate reductase activities of M. jalaludinii and V. parvula were 16.8 ± 0.34 and 16.9 ± 1.21 mmol NADH oxidized/min/mg of cellular N, respectively. In conclusion, this showed that M. jalaludinii can be used as an efficient methane reducing agent in rumen.
-
Citations
Citations to this article as recorded by- High-solid anaerobic acidification of cassava pulp in leach-bed reactors-inoculated with Clostridium butyricum-rich microbial consortiums and its prospective for biogas
Alifia Issabella Mulyawati, Benjaphon Suraraksa, Pawinee Chaiprasert
Biomass Conversion and Biorefinery.2025; 15(18): 24965. CrossRef - Hydrogenosome, Pairing Anaerobic Fungi and H2-Utilizing Microorganisms Based on Metabolic Ties to Facilitate Biomass Utilization
Jing Ma, Pei Zhong, Yuqi Li, Zhanying Sun, Xiaoni Sun, Min Aung, Lizhuang Hao, Yanfen Cheng, Weiyun Zhu
Journal of Fungi.2022; 8(4): 338. CrossRef - Dietary wheat and reduced methane yield are linked to rumen microbiome changes in dairy cows
Keith W. Savin, Peter J. Moate, S. R. O. Williams, Carolyn Bath, Joanne Hemsworth, Jianghui Wang, Doris Ram, Jody Zawadzki, Simone Rochfort, Benjamin G. Cocks, James E. Wells
PLOS ONE.2022; 17(5): e0268157. CrossRef - Reducing Enteric Methanogenesis through Alternate Hydrogen Sinks in the Rumen
Prasanta Kumar Choudhury, Rajashree Jena, Sudhir Kumar Tomar, Anil Kumar Puniya
Methane.2022; 1(4): 320. CrossRef - Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model
Limei Lin, Fei Xie, Daming Sun, Junhua Liu, Weiyun Zhu, Shengyong Mao
Microbiome.2019;[Epub] CrossRef - Recent insight and future techniques to enhance rumen fermentation in dairy goats
Lovelia L. Mamuad, Sung Sill Lee, Sang Suk Lee
Asian-Australasian Journal of Animal Sciences.2019; 32(8): 1321. CrossRef - Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review
P Chellapandi, M Bharathi, C Sangavai, R Prathiviraj
Veterinary and Animal Science.2018; 6: 86. CrossRef - Diet and feed efficiency status affect rumen microbial profiles of sheep
M.J. Ellison, G.C. Conant, W.R. Lamberson, R.R. Cockrum, K.J. Austin, D.C. Rule, K.M. Cammack
Small Ruminant Research.2017; 156: 12. CrossRef - Quantification of organic acids in ruminal in vitro batch culture fermentation supplemented with fumarate using a herb mix as a substrate
J. Pisarčíková, Z. Váradyová, K. Mihaliková, S. Kišidayová, J. Plaizier
Canadian Journal of Animal Science.2016; 96(1): 60. CrossRef - Effect of Lactobacillus mucosae on In vitro Rumen Fermentation Characteristics of Dried Brewers Grain, Methane Production and Bacterial Diversity
Alvin P. Soriano, Lovelia L. Mamuad, Seon-Ho Kim, Yeon Jae Choi, Chang Dae Jeong, Gui Seck Bae, Moon Baek Chang, S. Suk Lee
Asian-Australasian Journal of Animal Sciences.2014; 27(11): 1562. CrossRef - Effect of fumarate reducing bacteria on in vitro rumen fermentation, methane mitigation and microbial diversity
Lovelia Mamuad, Seon Ho Kim, Chang Dae Jeong, Yeon Jae Choi, Che Ok Jeon, Sang-Suk Lee
Journal of Microbiology.2014; 52(2): 120. CrossRef - Characterization of rumen bacterial strains isolated from enrichments of rumen content in the presence of propolis
Sílvia Cristina de Aguiar, Lucia Maria Zeoula, Odimari Pricila Pires do Prado, Pedro Braga Arcuri, Evelyne Forano
World Journal of Microbiology and Biotechnology.2014; 30(11): 2917. CrossRef
- High-solid anaerobic acidification of cassava pulp in leach-bed reactors-inoculated with Clostridium butyricum-rich microbial consortiums and its prospective for biogas
Research Support, Non-U.S. Gov't
- Acinetobacter oleivorans sp. nov. Is Capable of Adhering to and Growing on Diesel-Oil
- Yoon-Suk Kang , Jaejoon Jung , Che Ok Jeon , Woojun Park
- J. Microbiol. 2011;49(1):29-34. Published online March 3, 2011
- DOI: https://doi.org/10.1007/s12275-011-0315-y
- 725 View
- 2 Download
- 55 Crossref
-
Abstract
PDF
- A diesel-oil and n-hexadecane-degrading novel bacterial strain, designated DR1T, was isolated from a rice paddy in Deok-So, South Korea. The strain DR1T cells were Gram-negative, aerobic coccobacilli, and grew at 20-37°C with the optimal temperature of 30°C, and an optimal pH of 6-8. Interestingly, strain DR1T was highly motile (swimming and swarming motility) using its fimbriae, and generated N-acyl homoserine lactones as quorum-sensing signals. The predominant respiratory quinone as identified as ubiquinone-9 (Q-9) and DNA G+C content was 41.4 mol%. Comparative 16S rRNA gene sequence-based phylogenetic analysis placed the strain in a clade with the species A. calcoaceticus, A. haemolyticus, A. baumannii, A. baylyi, and A. beijerinckii, with which it evidenced sequence similarities of 98.2%, 97.4%, 97.2%, 97.1%, and 97.0%, respectively. DNA-DNA hybridization values between strain DR1T and other Acinetobacter spp. were all less than 20%. The physiological and taxonomic characteristics with the DNA-DNA hybridization data supported the identification of strain DR1T in the genus Acinetobacter as a novel species, for which the name Acinetobacter oleivorans sp. nov. is proposed. The type strain is DR1T (=KCTC 23045T =JCM 16667T).
-
Citations
Citations to this article as recorded by- The GntR/VanR transcription regulator AlkR represses AlkB2 monooxygenase expression and regulates n‐alkane degradation in Pseudomonas aeruginosa SJTD‐1
Wanli Peng, Xiuli Wang, Qinchen Liu, Zhihong Xiao, Fulin Li, Nannan Ji, Zhuo Chen, Jiaying He, Junhao Wang, Zixin Deng, Shuangjun Lin, Rubing Liang
mLife.2025; 4(2): 126. CrossRef -
Synergistic co-metabolism enhancing the crude oil degradation by
Acinetobacter oleivorans
DR1 and its metabolic potential
Lairenjam Paikhomba Singha, Renuka Kumari, Keisam Malabika Singha, Piyush Pandey, Pratyoosh Shukla, Sudhir Pratap Singh
Microbiology Spectrum.2025;[Epub] CrossRef - Diverse Acinetobacter in retail meat: a hidden vector of novel species and antimicrobial resistance genes, including plasmid-borne bla, mcr-4.3 and tet(X3)
Alba Puente, José F. Cobo-Díaz, Márcia Oliveira, Rebeca Cordero-García, Filipa Grosso, Francesco Asnicar, Nicola Segata, Yara El dessouky, Mercedes López, Miguel Prieto, Luísa Peixe, Avelino Alvarez-Ordóñez
International Journal of Food Microbiology.2025; 441: 111313. CrossRef - Validation List no. 220. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Acinetobacter Non-baumannii Species: Occurrence in Infections in Hospitalized Patients, Identification, and Antibiotic Resistance
Eugene Sheck, Andrey Romanov, Valeria Shapovalova, Elvira Shaidullina, Alexey Martinovich, Natali Ivanchik, Anna Mikotina, Elena Skleenova, Vladimir Oloviannikov, Ilya Azizov, Vera Vityazeva, Alyona Lavrinenko, Roman Kozlov, Mikhail Edelstein
Antibiotics.2023; 12(8): 1301. CrossRef - Acinetobacter spp. bloodstream infection in hematological patients: a 10-year single-center study
Jia Li, Xiaomeng Feng, Jieru Wang, Qingsong Lin, Yizhou Zheng, Fengkui Zhang, Yingchang Mi, Xiaofan Zhu, Erlie Jiang, Zhijian Xiao, Jianxiang Wang, Sizhou Feng
BMC Infectious Diseases.2023;[Epub] CrossRef - Quorum sensing in biofilms: a key mechanism to target in ecotoxicological studies
Raphaël Lami, Laurent Urios, Maëlle Molmeret, Régis Grimaud
Critical Reviews in Microbiology.2023; 49(6): 786. CrossRef -
Draft genome sequence of
Acinetobacter
sp. AYS6, a potential plant growth-promoting endophyte
Ayomide Emmanuel Fadiji, Ayansina Segun Ayangbenro, Akinlolu Olalekan Akanmu, Olubukola Oluranti Babalola, J. Cameron Thrash
Microbiology Resource Announcements.2023;[Epub] CrossRef -
CRISPR-Cas in Acinetobacter baumannii Contributes to Antibiotic Susceptibility by Targeting Endogenous
AbaI
Yuhang Wang, Jie Yang, Xiaoli Sun, Mengying Li, Pengyu Zhang, Zhongtian Zhu, Hongmei Jiao, Tingting Guo, Guocai Li, Monica Adriana Garcia-Solache, Jiaqi Cheng
Microbiology Spectrum.2022;[Epub] CrossRef - The microbial RNA metagenome of Aedes albopictus (Diptera: Culicidae) from Germany
Janine Rau, Doreen Werner, Martin Beer, Dirk Höper, Helge Kampen
Parasitology Research.2022; 121(9): 2587. CrossRef - Isoprene-Degrading Bacteria from Soils Associated with Tropical Economic Crops and Framework Forest Trees
Toungporn Uttarotai, Boyd A. McKew, Farid Benyahia, J. Colin Murrell, Wuttichai Mhuantong, Sunanta Wangkarn, Thararat Chitov, Sakunnee Bovonsombut, Terry J. McGenity
Microorganisms.2021; 9(5): 1024. CrossRef - Mapping Global Prevalence of Acinetobacter baumannii and Recent Vaccine Development to Tackle It
Chaoying Ma, Siobhán McClean
Vaccines.2021; 9(6): 570. CrossRef -
Acinetobacter geminorum sp. nov., isolated from human throat swabs
Sophia Wolf, Elisabeth Barth-Jakschic, Karolin Birkle, Baris Bader, Matthias Marschal, Jan Liese, Silke Peter, Philipp Oberhettinger
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef - Catheter-Associated Blood Stream Infection Caused by Acinetobacter oleivorans
Masanori Matsukawa, Kotaro Aoki, Yoshikazu Ishii, Keiji Murakami
Infectious Diseases in Clinical Practice.2021; 29(6): e454. CrossRef - Characterization of the Biodiesel Degrading Acinetobacter oleivorans Strain PT8 Isolated from the Fecal Material of a Painted Turtle (Chrysemys picta)
Amanda Deems, Michael Du Prey, Scot E. Dowd, Richard William McLaughlin
Current Microbiology.2021; 78(2): 522. CrossRef - Kurstakin molecules facilitate diesel oil assimilation by Acinetobacter haemolyticus strain 2SA through overexpression of alkane hydroxylase genes
Mamadou Malick Diallo, Caner Vural, Umut Şahar, Guven Ozdemir
Environmental Technology.2021; 42(13): 2031. CrossRef - Studying Hydraulic Interconnections in Low-Permeability Media by Using Bacterial Communities as Natural Tracers
Pietro Rizzo, Emma Petrella, Antonio Bucci, Emma Salvioli-Mariani, Alessandro Chelli, Anna Maria Sanangelantoni, Melinda Raimondo, Andrea Quagliarini, Fulvio Celico
Water.2020; 12(6): 1795. CrossRef - Microevolution in the major outer membrane protein OmpA of Acinetobacter baumannii
Alejandro M. Viale, Benjamin A. Evans
Microbial Genomics .2020;[Epub] CrossRef - Protective Role of Bacterial Alkanesulfonate Monooxygenase under Oxidative Stress
Chulwoo Park, Bora Shin, Woojun Park, Maia Kivisaar
Applied and Environmental Microbiology.2020;[Epub] CrossRef - Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter
Valeria Mateo-Estrada, Lucía Graña-Miraglia, Gamaliel López-Leal, Santiago Castillo-Ramírez, Luis Delaye
Genome Biology and Evolution.2019; 11(9): 2531. CrossRef - Biodegradation of diesel oil and n-alkanes (C18, C20, and C22) by a novel strain Acinetobacter sp. K-6 in unsaturated soil
Dhiraj Kumar Chaudhary, Rishikesh Bajagain, Seung-Woo Jeong, Jaisoo Kim
Environmental Engineering Research.2019; 25(3): 290. CrossRef - Acinetobacter Strain KUO11TH, a Unique Organism Related to Acinetobacter pittii and Isolated from the Skin Mucus of Healthy Bighead Catfish and Its Efficacy Against Several Fish Pathogens
Anurak Bunnoy, Uthairat Na-Nakorn, Pattanapon Kayansamruaj, Prapansak Srisapoome
Microorganisms.2019; 7(11): 549. CrossRef - RETRACTED: Biotransformation of 5-hydroxymethylfurfural by Acinetobacter oleivorans S27 for the synthesis of furan derivatives
Tharangattumana Krishnan Godan, R.O. Rajesh, Phukon C. Loreni, Amit Kumar Rai, Dinabandhu Sahoo, Ashok Pandey, Parameswaran Binod
Bioresource Technology.2019; 282: 88. CrossRef - Mitigation of soil contaminated with diesel fuel using bioelectrokinetics
Ikrema A. Hassan, Eltayeb E. Mohamedelhassan, Ernest K. Yanful, Ze-Chun Yuan
Journal of Environmental Science and Health, Part A.2019; 54(5): 416. CrossRef - Contribution of soil bacteria isolated from different regions into crude oil and oil product degradation
Irina F. Puntus, Oksana V. Borzova, Tatyana V. Funtikova, Nataliya E. Suzina, Nataliya S. Egozarian, Valentina N. Polyvtseva, Ekaterina S. Shumkova, Lenar I. Akhmetov, Ludmila A. Golovleva, Inna P. Solyanikova
Journal of Soils and Sediments.2019; 19(8): 3166. CrossRef - Mechanisms of Bacterial Tolerance and Persistence in the Gastrointestinal and Respiratory Environments
R. Trastoy, T. Manso, L. Fernández-García, L. Blasco, A. Ambroa, M. L. Pérez del Molino, G. Bou, R. García-Contreras, T. K. Wood, M. Tomás
Clinical Microbiology Reviews.2018;[Epub] CrossRef - An Increase of Abundance and Transcriptional Activity for Acinetobacter junii Post Wastewater Treatment
Muhammad Jumat, Muhammad Haroon, Nada Al-Jassim, Hong Cheng, Pei-Ying Hong
Water.2018; 10(4): 436. CrossRef - Construction and Evaluation of a Korean Native Microbial Consortium for the Bioremediation of Diesel Fuel-Contaminated Soil in Korea
Yunho Lee, Sang Eun Jeong, Moonsuk Hur, Sunghwan Ko, Che Ok Jeon
Frontiers in Microbiology.2018;[Epub] CrossRef - The natural environment as a reservoir of pathogenic and non-pathogenic Acinetobacter species
Mary A. Adewoyin, Anthony I. Okoh
Reviews on Environmental Health.2018; 33(3): 265. CrossRef - Metabolic and stress responses of Acinetobacter oleivorans DR1 during long‐chain alkane degradation
Chulwoo Park, Bora Shin, Jaejoon Jung, Yunho Lee, Woojun Park
Microbial Biotechnology.2017; 10(6): 1809. CrossRef - Acinetobacter halotolerans sp. nov., a novel halotolerant, alkalitolerant, and hydrocarbon degrading bacterium, isolated from soil
Ram Hari Dahal, Dhiraj Kumar Chaudhary, Jaisoo Kim
Archives of Microbiology.2017; 199(5): 701. CrossRef - Phylogenetic signal in phenotypic traits related to carbon source assimilation and chemical sensitivity in Acinetobacter species
Ado Van Assche, Sergio Álvarez-Pérez, Anna de Breij, Joseph De Brabanter, Kris A. Willems, Lenie Dijkshoorn, Bart Lievens
Applied Microbiology and Biotechnology.2017; 101(1): 367. CrossRef - Screening and In Situ Monitoring of Potential Petroleum Hydrocarbon Degraders in Contaminated Surface Water
Bulent Icgen, Fadime Yilmaz
CLEAN – Soil, Air, Water.2017;[Epub] CrossRef - Inhibitory Effect of Taurine on Biofilm Formation During Alkane Degradation in Acinetobacter oleivorans DR1
Hyo Jung Eom, Woojun Park
Microbial Ecology.2017; 74(4): 821. CrossRef - Resistance to Antibiotics, Biocides, Preservatives and Metals in Bacteria Isolated from Seafoods: Co-Selection of Strains Resistant or Tolerant to Different Classes of Compounds
José L. Romero, María J. Grande Burgos, Rubén Pérez-Pulido, Antonio Gálvez, Rosario Lucas
Frontiers in Microbiology.2017;[Epub] CrossRef - Quorum sensing network in clinical strains of A. baumannii: AidA is a new quorum quenching enzyme
María López, Celia Mayer, Laura Fernández-García, Lucía Blasco, Andrea Muras, Federico Martín Ruiz, German Bou, Ana Otero, María Tomás, Feng Gao
PLOS ONE.2017; 12(3): e0174454. CrossRef - Hydrocarbon-Degrading Bacteria Exhibit a Species-Specific Response to Dispersed Oil while Moderating Ecotoxicity
Will A. Overholt, Kala P. Marks, Isabel C. Romero, David J. Hollander, Terry W. Snell, Joel E. Kostka, G. Voordouw
Applied and Environmental Microbiology.2016; 82(2): 518. CrossRef - Acinetobacter lactucae sp. nov., isolated from iceberg lettuce (Asteraceae: Lactuca sativa)
Alejandro P. Rooney, Christopher A. Dunlap, Lina B. Flor-Weiler
International Journal of Systematic and Evolutionary Microbiology.2016; 66(9): 3566. CrossRef - Reservoirs of Non-baumannii Acinetobacter Species
Ahmad Al Atrouni, Marie-Laure Joly-Guillou, Monzer Hamze, Marie Kempf
Frontiers in Microbiology.2016;[Epub] CrossRef - Community Analysis and Recovery of Phenol-degrading Bacteria from Drinking Water Biofilters
Qihui Gu, Qingping Wu, Jumei Zhang, Weipeng Guo, Huiqing Wu, Ming Sun
Frontiers in Microbiology.2016;[Epub] CrossRef -
Acinetobacter species as model microorganisms in environmental microbiology: current state and perspectives
Jaejoon Jung, Woojun Park
Applied Microbiology and Biotechnology.2015; 99(6): 2533. CrossRef - Molecular Mechanisms of Enhanced Bacterial Growth on Hexadecane with Red Clay
Jaejoon Jung, In-ae Jang, Sungeun Ahn, Bora Shin, Jisun Kim, Chulwoo Park, Seung Cheol Jee, Jung-Suk Sung, Woojun Park
Microbial Ecology.2015; 70(4): 912. CrossRef - Diesel Oil Degradation Potential of a Bacterium Inhabiting Petroleum Hydrocarbon Contaminated Surface Waters and Characterization of Its Emulsification Ability
Gozde Onur, Fadime Yilmaz, Bulent Icgen
Journal of Surfactants and Detergents.2015; 18(4): 707. CrossRef - Role of quorum sensing in bacterial infections
Israel Castillo-Juárez, Toshinari Maeda, Edna Ayerim Mandujano-Tinoco, María Tomás, Berenice Pérez-Eretza, Silvia Julieta García-Contreras, Thomas K Wood, Rodolfo García-Contreras
World Journal of Clinical Cases.2015; 3(7): 575. CrossRef - TetR repressor-based bioreporters for the detection of doxycycline using Escherichia coli and Acinetobacter oleivorans
Hyerim Hong, Woojun Park
Applied Microbiology and Biotechnology.2014; 98(11): 5039. CrossRef - Plasmid-Encoded Tetracycline Efflux Pump Protein Alters Bacterial Stress Responses and Ecological Fitness of Acinetobacter oleivorans
Hyerim Hong, Jaejoon Jung, Woojun Park, Nancy E. Freitag
PLoS ONE.2014; 9(9): e107716. CrossRef - Acinetobacter nectaris sp. nov. and Acinetobacter boissieri sp. nov., isolated from floral nectar of wild Mediterranean insect-pollinated plants
Sergio Álvarez-Pérez, Bart Lievens, Hans Jacquemyn, Carlos M. Herrera
International Journal of Systematic and Evolutionary Microbiology.2013; 63(Pt_4): 1532. CrossRef - The genome sequence of the hydrocarbon-degrading Acinetobacter venetianus VE-C3
Marco Fondi, Ermanno Rizzi, Giovanni Emiliani, Valerio Orlandini, Luisa Berna, Maria Cristiana Papaleo, Elena Perrin, Isabel Maida, Giorgio Corti, Gianluca De Bellis, Franco Baldi, Lenie Dijkshoorn, Mario Vaneechoutte, Renato Fani
Research in Microbiology.2013; 164(5): 439. CrossRef - Evolution of a Pathogen: A Comparative Genomics Analysis Identifies a Genetic Pathway to Pathogenesis in Acinetobacter
Jason W. Sahl, John D. Gillece, James M. Schupp, Victor G. Waddell, Elizabeth M. Driebe, David M. Engelthaler, Paul Keim, J. Ross Fitzgerald
PLoS ONE.2013; 8(1): e54287. CrossRef - Characterization of novel diesel-degrading strains Acinetobacter haemolyticus MJ01 and Acinetobacter johnsonii MJ4 isolated from oil-contaminated soil
Myungjin Lee, Sung-Geun Woo, Leonid N. Ten
World Journal of Microbiology and Biotechnology.2012; 28(5): 2057. CrossRef - Diverse responses to UV light exposure in Acinetobacter include the capacity for DNA damage-induced mutagenesis in the opportunistic pathogens Acinetobacter baumannii and Acinetobacter ursingii
Janelle M. Hare, James A. Bradley, Ching-li Lin, Tyler J. Elam
Microbiology.2012; 158(3): 601. CrossRef - Complexity of cell–cell interactions between Pseudomonas sp. AS1 and Acinetobacter oleivorans DR1: metabolic commensalism, biofilm formation and quorum quenching
Hyoju Seo, Jisun Kim, Jaejoon Jung, Hyun Mi Jin, Che Ok Jeon, Woojun Park
Research in Microbiology.2012; 163(3): 173. CrossRef - Acinetobacter: A potential reservoir and dispenser for β-lactamases
Wei-Hua Zhao, Zhi-Qing Hu
Critical Reviews in Microbiology.2012; 38(1): 30. CrossRef - Physiological and metabolic responses for hexadecane degradation in Acinetobacter oleivorans DR1
Jaejoon Jung, Jaemin Noh, Woojun Park
The Journal of Microbiology.2011; 49(2): 208. CrossRef - Comparative Genomic Analysis of Acinetobacter oleivorans DR1 To Determine Strain-Specific Genomic Regions and Gentisate Biodegradation
Jaejoon Jung, Eugene L. Madsen, Che Ok Jeon, Woojun Park
Applied and Environmental Microbiology.2011; 77(20): 7418. CrossRef
- The GntR/VanR transcription regulator AlkR represses AlkB2 monooxygenase expression and regulates n‐alkane degradation in Pseudomonas aeruginosa SJTD‐1
Research Support, Non-U.S. Gov't
- Isolation, Characterization, and Abundance of Filamentous Members of Caldilineae in Activated Sludge
- Dae-No Yoon , Soo-Je Park , So-Jeong Kim , Che Ok Jeon , Jong-Chan Chae , Sung-Keun Rhee
- J. Microbiol. 2010;48(3):275-283. Published online June 23, 2010
- DOI: https://doi.org/10.1007/s12275-010-9366-8
- 559 View
- 0 Download
- 50 Crossref
-
Abstract
PDF
- Chloroflexi are currently believed to serve as backbone forming agents in the activated sludge of wastewater treatment plants (WWTPs). In this study, we isolated and characterized filamentous bacteria in the class Caldilineae of the phylum Chloroflexi in municipal WWTPs. Diversity analysis using Chloroflexi-specific 16S rRNA gene clone libraries showed that 97% of the clones belonged to the subdivision Anaerolineae comprising the two classes Anaerolineae (95%) and Caldilineae (2%). Clones of Caldilineae were related to a thermophilic filament Caldilinea aerophila with 93% 16S rRNA gene sequence similarity. We obtained filamentous isolates classified into the class Caldilineae showing the best match to C. aerophila with 89% 16S rRNA gene sequence similarity. Isolates showed no ability to assimilate glucose or N-acetylglucosamine or to degrade biopolymers which were observed in filamentous Chloroflexi of WWTPs. The assessment of relative abundance based on quantitative PCR of the 16S rRNA gene indicated that members of the class Caldilineae comprised 12-19% of the Chloroflexi in the activated sludge. Additionally, fluorescence in situ hybridization experiments showed that diverse filamentous Caldilineae inhabit the activated sludge of municipal WWTPs. These findings yield insight into the role of filamentous mesophilic Caldilinea in stabilizing flocs of activated sludge in a wide range of WWTPs.
-
Citations
Citations to this article as recorded by- Superior membrane fouling control in membrane bioreactors using reciprocation with limited aeration
Runzhang Zuo, Canhui Song, Dajun Ren, Zihan Mei, Chuheng Xie, Feixiang Zan, Qian Li, Xiejuan Lu, Xiaohui Wu
Bioresource Technology.2026; 439: 133380. CrossRef - Insight into the granular characteristics and microbial communities of SNDPR in an innovative continuous flow reactor across varying COD concentrations
Shuai Li, Sha Zhang, Dong Li, Huiping Zeng, Yixing Yuan, Jie Zhang
Environmental Technology.2026; 47(10): 1599. CrossRef - Integrated biological, ultrasonic, and ozonation treatments for enhanced waste activated sludge reduction in an anaerobic-oxic process: Performance and mechanistic insights
Wenxin Shi, Tao Zhang, Daniela Almeida Streitwieser, Yibo Wang, Yiming Han, Chengrong Li, Mengda Feng
Journal of Environmental Chemical Engineering.2026; 14(3): 123236. CrossRef - Characterization of microbial communities degrading natural organic compounds in activated sludge through 16S rRNA sequencing and mass spectrometry
Zhong-Wei Ke, Chiu-Lan Hsieh, Yen-Yi Liu
Environmental Science and Pollution Research.2025; 32(46): 26501. CrossRef - Enhancement mechanism of residue Gd (III)-induced in anaerobic ammonia oxidation for nitrogen removal from rare earth tailings leachate
Xiangyi Deng, Ting Zeng, Shengnan Huang, Chunqiao Xiao, Liu Liu, Wanqiang Dong, Zhenyue Zhang, Ru’an Chi
Journal of Environmental Chemical Engineering.2025; 13(3): 117008. CrossRef - Unveiling the hidden diversity and functional role of Chloroflexota in full-scale wastewater treatment plants through genome-centric analyses
Patricia Bovio-Winkler, Angela Cabezas, Claudia Etchebehere
ISME Communications.2024;[Epub] CrossRef - Insights into the individual and combined effects of Cu(Ⅱ) and Ni(Ⅱ) on anammox: Nitrogen removal performance, enzyme activity and microbial community
Minghao Mu, Dengzhi Li, Shilin Lin, Haisong Bi, Xinqiang Liu, Zheng Wang, Chengduo Qian, Junyuan Ji
Chemosphere.2024; 365: 143308. CrossRef - Exploring novel quorum quenching strain: Enhanced disrupting autoinducer-2 bacterial communication to combat biofouling in membrane bioreactor for wastewater treatment
Hyeyeon Park, Jun-U Jang, Jeongmi Park, Hyeona Park, Kwang-Ho Choo, Jongho Jeon, Hyeonuk Yeo, Chung-Hak Lee, Kibaek Lee
Chemical Engineering Journal.2024; 486: 150173. CrossRef - Ozone/biological aerated filter integrated process for recycled paper mill wastewater: A pilot-scale study
Laibao Ding, Qingwen Tian, Ran Yang, Jinwei Zhu, Qi Guo, Guigan Fang
Biochemical Engineering Journal.2024; 211: 109466. CrossRef - Genome-centric metagenomic insights into the role of Chloroflexi in anammox, activated sludge and methanogenic reactors
Patricia Bovio-Winkler, Leandro D. Guerrero, Leonardo Erijman, Pía Oyarzúa, María Eugenia Suárez-Ojeda, Angela Cabezas, Claudia Etchebehere
BMC Microbiology.2023;[Epub] CrossRef - Reclaimed water use improved polluted water's self-purification capacity --Evidenced by water quality factors and bacterial community structure
Shenqun An, Ying Song, Qiang Fu, Rong Qi, Zehao Wu, Feiyang Ge, Xiaoqian Lu, Wei An, Wenxuan Han
Journal of Cleaner Production.2023; 386: 135736. CrossRef - Analysis of Microbial Communities in Membrane Biofilm Reactors Using a High-Density Microarray
Shilong Li, Liang Duan, Yang Zhao, Fu Gao, Slawomir W. Hermanowicz
Membranes.2023; 13(3): 324. CrossRef - Recent advances in understanding the ecology of the filamentous bacteria responsible for activated sludge bulking
T. Nittami, S. Batinovic
Letters in Applied Microbiology.2022; 75(4): 759. CrossRef - Study on influence mechanism of biochar on soil nitrogen conversion
Pingnan Zhao, Shen Wang, Dong Liu, Hongxu Li, Song Han, Ming Li
Environmental Pollutants and Bioavailability.2022; 34(1): 419. CrossRef - Regulation of exogenous acyl homoserine lactones on sludge settling performance: Monitoring via ultrasonic time-domain reflectometry
Deyuan Dong, Qiuju Liu, Xiaoyu Wang, Haidong Hu, Bing Wu, Hongqiang Ren, Jinfeng Wang
Chemosphere.2022; 303: 135019. CrossRef - Evaluation of the Potential of Sewage Sludge Mycobiome to Degrade High Diclofenac and Bisphenol-A Concentrations
Ulises Conejo-Saucedo, Alejandro Ledezma-Villanueva, Gabriela Ángeles de Paz, Mario Herrero-Cervera, Concepción Calvo, Elisabet Aranda
Toxics.2021; 9(6): 115. CrossRef - Long-term effects of maize straw return and manure on the microbial community in cinnamon soil in Northern China using 16S rRNA sequencing
Zhiping Liu, Huaiping Zhou, Wenyan Xie, Zhenxing Yang, Qianqian Lv, Massimiliano Cardinale
PLOS ONE.2021; 16(4): e0249884. CrossRef - Effect of prolonged sludge retention times on the performance of membrane bioreactor and microbial community for leachate treatment under restricted aeration
Suda Ittisupornrat, Athit Phetrak, Suthida Theepharaksapan, Wuttichai Mhuantong, Tomohiro Tobino
Chemosphere.2021; 284: 131153. CrossRef - Anammox bacteria enrich naturally in suspended sludge system during partial nitrification of domestic sewage and contribute to nitrogen removal
Qingteng Gong, Bo Wang, Xiaofei Gong, Xuefan Liu, Yongzhen Peng
Science of The Total Environment.2021; 787: 147658. CrossRef - Fouling characterization and aeration performance recovery of fine-pore diffusers operated for 10 years in a full-scale wastewater treatment plant
Lu-Man Jiang, Liuyu Chen, Zhen Zhou, Dongqi Sun, Yunhui Li, Ming Zhang, Yuan Liu, Silu Du, Guang Chen, Jie Yao
Bioresource Technology.2020; 307: 123197. CrossRef - The seasonal changes of core bacterial community decide sewage purification in sub-plateau municipal sewage treatment plants
Xiao-Hu Kang, Yan Leng, Mafiana Macdonald O, Xiao-Ying Zeng, Shi-Weng Li
Bioprocess and Biosystems Engineering.2020; 43(9): 1609. CrossRef - Activated sludge microbiome in a membrane bioreactor for treating Ramen noodle-soup wastewater
Ryoich Tanaka, Katsuya Nouzaki, Ronald R. Navarro, Tomohiro Inaba, Tomo Aoyagi, Yuya Sato, Atsushi Ogata, Hiroshi Yanagishita, Tomoyuki Hori, Hiroshi Habe
The Journal of General and Applied Microbiology.2020; 66(6): 339. CrossRef - Microbial community shifts in the oxic-settling-anoxic process in response to changes to sludge interchange ratio
Agne Karlikanovaite-Balikci, E. Gozde Ozbayram, Nevin Yagci, Orhan Ince
Heliyon.2019; 5(4): e01517. CrossRef - Preliminary analysis ofChloroflexipopulations in full-scale UASB methanogenic reactors
P. Bovio, A. Cabezas, C. Etchebehere
Journal of Applied Microbiology.2019; 126(2): 667. CrossRef - The Phylogeny, Biodiversity, and Ecology of the Chloroflexi in Activated Sludge
Lachlan B. M. Speirs, Daniel T. F. Rice, Steve Petrovski, Robert J. Seviour
Frontiers in Microbiology.2019;[Epub] CrossRef - Genomic insights into Candidatus Amarolinea aalborgensis gen. nov., sp. nov., associated with settleability problems in wastewater treatment plants
Martin H. Andersen, Simon J. McIlroy, Marta Nierychlo, Per H. Nielsen, Mads Albertsen
Systematic and Applied Microbiology.2019; 42(1): 77. CrossRef - Seasonal bacterial community succession in four typical wastewater treatment plants: correlations between core microbes and process performance
Bo Zhang, Quanwei Yu, Guoqi Yan, Hubo Zhu, Xiang yang Xu, Liang Zhu
Scientific Reports.2018;[Epub] CrossRef - Performance and microbial characteristics of biomass in a full-scale aerobic granular sludge wastewater treatment plant
Piotr Świątczak, Agnieszka Cydzik-Kwiatkowska
Environmental Science and Pollution Research.2018; 25(2): 1655. CrossRef - Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis
Bo Zhang, Xiangyang Xu, Liang Zhu
AMB Express.2018;[Epub] CrossRef - Quantification of Chloroflexi Eikelboom morphotype 1851 for prediction and control of bulking events in municipal activated sludge plants in Japan
Tadashi Nittami, Lachlan B. M. Speirs, Takuya Yamada, Ichiro Suzuki, Junji Fukuda, Futoshi Kurisu, Robert J. Seviour
Applied Microbiology and Biotechnology.2017; 101(9): 3861. CrossRef - Effects of single and combined copper/perfluorooctane sulfonate on sequencing batch reactor process and microbial community in activated sludge
Xintong Liu, Hua Yin, Shaoyu Tang, Mi Feng, Hui Peng, Guining Lu, Zehua Liu, Zhi Dang
Bioresource Technology.2017; 238: 407. CrossRef - Performance and Microbial Diversity in a Low-Energy ANF-WDSRBC System for the Post-Treatment of Decentralized Domestic Wastewater
Juanhong Li, Xiwu Lu
Water.2017; 9(5): 330. CrossRef - Phage-host associations in a full-scale activated sludge plant during sludge bulking
Ruyin Liu, Rong Qi, Juan Wang, Yu Zhang, Xinchun Liu, Simona Rossetti, Valter Tandoi, Min Yang
Applied Microbiology and Biotechnology.2017; 101(16): 6495. CrossRef - Eikelboom filamentous morphotypes 0675 and 0041 embrace members of the Chloroflexi: resolving their phylogeny, and design of fluorescence in situ hybridisation probes for their identification
Lachlan B. M. Speirs, Zoe A. Dyson, Joseph Tucci, R. J. Seviour
FEMS Microbiology Ecology.2017;[Epub] CrossRef - Partial nitrification and denitrification of mature landfill leachate using a pilot-scale continuous activated sludge process at low dissolved oxygen
Zhenguo Chen, Xiaojun Wang, YongYuan Yang, Markus W. Mirino, Yanlei Yuan
Bioresource Technology.2016; 218: 580. CrossRef - Bacterial indicator taxa in soils under different long-term agricultural management
N.G. Jiménez-Bueno, C. Valenzuela-Encinas, R. Marsch, D. Ortiz-Gutiérrez, N. Verhulst, B. Govaerts, L. Dendooven, Y.E. Navarro-Noya
Journal of Applied Microbiology.2016; 120(4): 921. CrossRef - The activated sludge bulking filament Eikelboom morphotype 0803 embraces more than one member of theChloroflexi
Lachlan B. M. Speirs, Joseph Tucci, Robert J. Seviour, Alfons Stams
FEMS Microbiology Ecology.2015; 91(9): fiv100. CrossRef - Minimization of biomethane oxygen concentration during biogas upgrading in algal–bacterial photobioreactors
E. Posadas, M.L. Serejo, S. Blanco, R. Pérez, P.A. García-Encina, R. Muñoz
Algal Research.2015; 12: 221. CrossRef - Bacterial community shift along with the changes in operational conditions in a membrane-aerated biofilm reactor
Hai-Long Tian, Jie-Yu Zhao, Hong-Yu Zhang, Chang-Qiao Chi, Bao-An Li, Xiao-Lei Wu
Applied Microbiology and Biotechnology.2015; 99(7): 3279. CrossRef - Bacterial community analysis by PCR-DGGE and 454-pyrosequencing of horizontal subsurface flow constructed wetlands with front aeration
Fei Zhong, Juan Wu, Yanran Dai, Lihua Yang, Zhaohui Zhang, Shuiping Cheng, Qiong Zhang
Applied Microbiology and Biotechnology.2015; 99(3): 1499. CrossRef - Distribution and population structure characteristics of microorganisms in urban sewage system
Yanchen Liu, Qian Dong, Hanchang Shi
Applied Microbiology and Biotechnology.2015; 99(18): 7723. CrossRef - Pyrosequencing analysis of bacterial community and assembly in activated sludge samples from different geographic regions in China
Dayong Zhao, Rui Huang, Jin Zeng, Zhongbo Yu, Peng Liu, Shupei Cheng, Qinglong L. Wu
Applied Microbiology and Biotechnology.2014; 98(21): 9119. CrossRef - Algal–bacterial process for the simultaneous detoxification of thiocyanate-containing wastewater and maximized lipid production under photoautotrophic/photoheterotrophic conditions
Byung-Gon Ryu, Jungmin Kim, Wasif Farooq, Jong-In Han, Ji-Won Yang, Woong Kim
Bioresource Technology.2014; 162: 70. CrossRef - Replicating the microbial community and water quality performance of full-scale slow sand filters in laboratory-scale filters
Sarah-Jane Haig, Christopher Quince, Robert L. Davies, Caetano C. Dorea, Gavin Collins
Water Research.2014; 61: 141. CrossRef - Abundance and Diversity of Bacterial Nitrifiers and Denitrifiers and Their Functional Genes in Tannery Wastewater Treatment Plants Revealed by High-Throughput Sequencing
Zhu Wang, Xu-Xiang Zhang, Xin Lu, Bo Liu, Yan Li, Chao Long, Aimin Li, Hemant J. Purohit
PLoS ONE.2014; 9(11): e113603. CrossRef - Pyrosequencing analysis of bacterial communities in drinking water biofilters receiving influents of different types
Xiaobin Liao, Chao Chen, Zhao Wang, Rui Wan, Chih-Hsiang Chang, Xiaojian Zhang, Shuguang Xie
Process Biochemistry.2013; 48(4): 703. CrossRef - High and stable substrate specificities of microorganisms in enhanced biological phosphorus removal plants
Tomonori Kindaichi, Marta Nierychlo, Caroline Kragelund, Jeppe Lund Nielsen, Per Halkjær Nielsen
Environmental Microbiology.2013; 15(6): 1821. CrossRef - Bacterial abundance and composition in marine sediments beneath the Ross Ice Shelf, Antarctica
S. A. Carr, S. W. Vogel, R. B. Dunbar, J. Brandes, J. R. Spear, R. Levy, T. R. Naish, R. D. Powell, S. G. Wakeham, K. W. Mandernack
Geobiology.2013; 11(4): 377. CrossRef - 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
Tong Zhang, Ming-Fei Shao, Lin Ye
The ISME Journal.2012; 6(6): 1137. CrossRef - Eikelboom's morphotype 0803 in activated sludge belongs to the genus Caldilinea in the phylum Chloroflexi
Caroline Kragelund, Trine Rolighed Thomsen, Artur Tomasz Mielczarek, Per Halkjaer Nielsen
FEMS Microbiology Ecology.2011; 76(3): 451. CrossRef
- Superior membrane fouling control in membrane bioreactors using reciprocation with limited aeration
Research Support, Non-U.S. Gov't
- Virgibacillus xinjiangensis sp. nov., Isolated from a Salt Lake of Xin-jiang Province in China
- Che Ok Jeon , Jeong Myeong Kim , Dong-Jin Park , Li-Hua Xu , Cheng-Lin Jiang , Chang-Jin Kim
- J. Microbiol. 2009;47(6):705-709. Published online February 4, 2010
- DOI: https://doi.org/10.1007/s12275-009-0107-9
- 464 View
- 0 Download
- 8 Crossref
-
Abstract
PDF
- A strictly aerobic Gram-positive, moderately halophilic spore forming bacterium, designated strain SL6-1T, was isolated from a salt lake in Xin-jiang province, China. Growth of strain SL6-1T was observed at NaCl concentrations of 0~20% (w/v) (the optimum being 5~7%, w/v). The peptidoglycan type of strain SL6-1T was A1γ-meso-diaminopimelic acid and its major cellular fatty acids were iso-C14:0 and iso-C16:0 and anteiso-C15:0. The major respiratory isoprenoid quinone was MK-7 and the G+C content of the genomic DNA was 44.5 mol%. The major cellular phospholipids were phosphatidylglycerol and diphosphatidylglycerol. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain SL6-1T formed a phylogenetic lineage within the genus Virgibacillus. Based on 16S rRNA gene sequence similarity, the strain was most closely related to Virgibacillus olivae E308T, Virgibacillus kekensis YIM kkny16T, Virgibacillus marismortui DSM 12325T with 97.1%, 97.1%, and 97.0% gene sequence similarities, respectively and the sequence similarities to other related taxa were less than 96.7%. The DNA relatedness values between strain SL6-1T and V. olivae E308T, V. kekensis YIM kkny16T, V. marismortui DSM 12325T were 16.7%, 51.0%, and 22.8%, respectively. On the basis of physiological, biochemical and phylogenetic properties, strain SL6-1T represents a novel species, for which the name Virgibacillus xinjiangensis sp. nov. is proposed. The type strain is SL6-1T (=KCTC 13128T =DSM 19031T).
-
Citations
Citations to this article as recorded by- Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi
Young Joon Oh, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Jieun Lee, NamHee Kim, Mi-Young Shin, Hyo Kyeong Park, Myung-Ji Seo, Hak-Jong Choi
Journal of Microbiology.2017; 55(12): 933. CrossRef - Virgibacillus oceani sp. nov. isolated from ocean sediment
Xijie Yin, Yanliu Yang, Shuang Wang, Gaiyun Zhang
International Journal of Systematic and Evolutionary Microbiology.2015; 65(Pt_1): 159. CrossRef -
Evolution in the
Bacillaceae
Patricia Fajardo-Cavazos, Heather Maughan, Wayne L. Nicholson, Patrick Eichenberger, Adam Driks
Microbiology Spectrum.2014;[Epub] CrossRef - Virgibacillus natechei sp. nov., A Moderately Halophilic Bacterium Isolated from Sediment of a Saline Lake in Southwest of Algeria
Meriam Amziane, Farida Metiaz, Amel Darenfed-Bouanane, Zahia Djenane, Okba Selama, Ahmed Abderrahmani, Jean-Luc Cayol, Marie-Laure Fardeau
Current Microbiology.2013; 66(5): 462. CrossRef -
Virgibacillus campisalis sp. nov., from a marine solar saltern
Soo-Young Lee, Chul-Hyung Kang, Tae-Kwang Oh, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology .2012; 62(2): 347. CrossRef -
Virgibacillus alimentarius sp. nov., isolated from a traditional Korean food
Jandi Kim, Mi-Ja Jung, Seong Woon Roh, Young-Do Nam, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2011; 61(12): 2851. CrossRef - Impact of ionic liquids on extreme microbial biotypes from soil
Francisco J. Deive, Ana Rodríguez, Adélia Varela, Cátia Rodrígues, Maria C. Leitão, Jos A. M. P. Houbraken, Ana B. Pereiro, María A. Longo, M. Ángeles Sanromán, Robert A. Samson, Luís Paulo N. Rebelo, Cristina Silva Pereira
Green Chemistry.2011; 13(3): 687. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology .2010; 60(5): 1009. CrossRef
- Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi
Research Support, Non-U.S. Gov't
- Analysis of Microbial Communities Using Culture-dependent and Culture-independent Approaches in an Anaerobic/Aerobic SBR Reactor
- Shipeng Lu , Minjeong Park , Hyeon-Su Ro , Dae Sung Lee , Woojun Park , Che Ok Jeon
- J. Microbiol. 2006;44(2):155-161.
- DOI: https://doi.org/2370 [pii]
- 427 View
- 3 Download
-
Abstract
PDF
- Comparative analysis of microbial communities in a sequencing batch reactor which performed enhanced biological phosphorus removal (EBPR) was carried out using a cultivation-based technique and 16S rRNA gene clone libraries. A standard PCR protocol and a modified PCR protocol with low PCR cycle was applied to the two clone libraries of the 16S rRNA gene sequences obtained from EBPR sludge, respectively, and the resulting 424 clones were analyzed using restriction fragment length polymorphisms (RFLPs) on 16S rRNA gene inserts. Comparison of two clone libraries showed that the modified PCR protocol decreased the incidence of distinct fragment patterns from about 63% (137 of 217) in the standard PCR method to about 34% (70 of 207) under the modified protocol, suggesting that just a low level of PCR cycling (5 cycles after 15 cycles) can significantly reduce the formation of chimeric DNA in the final PCR products. Phylogenetic analysis of 81 groups with distinct RFLP patterns that were obtained using the modified PCR method revealed that the clones were affiliated with at least 11 phyla or classes of the domain Bacteria. However, the analyses of 327 colonies, which were grouped into just 41 distinct types by RFLP analysis, showed that they could be classified into five major bacterial lineages: α, β, γ- Proteobacteria, Actinobacteria, and the phylum Bacteroidetes, which indicated that the microbial community yielded from the cultivationbased method was still much simpler than that yielded from the PCR-based molecular method. In this study, the discrepancy observed between the communities obtained from PCR-based and cultivation-based methods seems to result from low culturabilities of bacteria or PCR bias even though modified culture and PCR methods were used. Therefore, continuous development of PCR protocol and cultivation techniques is needed to reduce this discrepancy.
- Pathogenomics of Streptococcus ilei sp. nov., a newly identified pathogen ubiquitous in human microbiome
- Dong-Wook Hyun , Jae-Yun Lee , Min-Soo Kim , Na-Ri Shin , Tae Woong Whon , Kyung Hyun Kim , Pil Soo Kim , Euon Jung Tak , Mi-Ja Jung , June Young Lee , Hyun Sik Kim , Woorim Kang , Hojun Sung , Che Ok Jeon , Jin-Woo Bae
- J. Microbiol. 2021;59(8):793-806.
- DOI: https://doi.org/10.1007/s12275-021-1165-x
- 801 View
- 8 Download
- 11 Web of Science
- 11 Crossref
-
Abstract
PDF
- Viridans group streptococci are a serious health concern because most of these bacteria cause life-threatening infections, especially in immunocompromised and hospitalized individuals. We focused on two alpha-hemolytic Streptococcus strains (I-G2 and I-P16) newly isolated from an ileostomy effluent of a colorectal cancer patient. We examined their pathogenic potential by investigating their prevalence in human and assessing their pathogenicity in a mouse model. We also predicted their virulence factors and pathogenic features by using comparative genomic analysis and in vitro tests. Using polyphasic and systematic approaches, we identified the isolates as belonging to a novel Streptococcus species and designated it as Streptococcus ilei. Metagenomic survey based on taxonomic assignment of datasets from the Human Microbiome Project revealed that S. ilei is present in most human population and at various body sites but is especially abundant in the oral cavity. Intraperitoneal injection of S. ilei was lethal to otherwise healthy C57BL/6J mice. Pathogenomics and in vitro assays revealed that S. ilei possesses a unique set of virulence factors. In agreement with the in vivo and in vitro data, which indicated that S. ilei strain I-G2 is more pathogenic than strain I-P16, only the former displayed the streptococcal group A antigen. We here newly identified S. ilei sp. nov., and described its prevalence in human, virulence factors, and pathogenicity. This will help to prevent S. ilei strain misidentification in the future, and improve the understanding and management of streptococcal infections.
-
Citations
Citations to this article as recorded by- A metagenomic study of the gut microbiome in patients with type 2 diabetes mellitus and myocardial infarction
Honghong Zhang, Changlin Zhai, Huilin Hu, Gang Qian, Menghui Mao
Acta Diabetologica.2026;[Epub] CrossRef - Microbiota analysis of perimenopausal women experiencing recurrent vaginitis in conjunction with urinary tract infection
Yingying Bi, Yuezhu Wang, Wu Li, Yuhang Chen, Jinlong Qin, Huajun Zheng
BMC Microbiology.2025;[Epub] CrossRef - Characterization of blood microbial population in beef calves with clinical signs of sepsis using 16S rRNA gene sequencing
Giuliano Borriello, Flaminia Valentini, Sara Ferrini, Giorgia Di Muro, Giulia Cagnotti, Elena Grego, Angela Maria Catania, Maria Cristina Stella, Ugo Ala, Patrizia Nebbia, Antonio D’Angelo, Claudio Bellino, Ulrike Gertrud Munderloh
PLOS One.2025; 20(5): e0324469. CrossRef - Alterations of Gut Microbiome and Serum Short‐Chain Fatty Acids in Children With Enthesitis‐Related Arthritis
Qi Zheng, Yiping Xu, Xubo Qian, Bin Hu, Qian Ma, Li Guo, Robert M. Dorazio, Meiping Lu
International Journal of Rheumatic Diseases.2025;[Epub] CrossRef -
Molecular characterization of a novel putative pathogen,
Streptococcus nakanoensis
sp. nov., isolated from sputum culture
Takeaki Wajima, Takashi Sugawara, Emi Tanaka, Kei-ichi Uchiya, Justin R. Kaspar
Microbiology Spectrum.2024;[Epub] CrossRef -
Streptococcus raffinosi sp. nov., isolated from human breast milk samples
Ha Viet Nguyen, Anh Thi Van Trinh, Linh Nguyen Hai Bui, Anh Thi Lan Hoang, Quyen Thi Le Tran, Trung Thanh Trinh
International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Description of Streptococcus dentalis sp. nov., Streptococcus gingivalis sp. nov., and Streptococcus lingualis sp. nov., Isolated from Human Oral Cavities
Beom-Jin Goo, Young-Sik Choi, Do-Hun Gim, Su-Won Jeong, Jee-Won Choi, Hojun Sung, Jae-Yun Lee, Jin-Woo Bae
Journal of Microbiology.2024; 62(11): 973. CrossRef - Valid and accepted novel bacterial taxa derived from human clinical specimens and taxonomic revisions published in 2022
Erik Munson, Arianna Carella, Karen C. Carroll, Romney M. Humphries
Journal of Clinical Microbiology.2023;[Epub] CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM. Validation List no. 203
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef - Modulation of gut microbiota and fecal metabolites by corn silk among high-fat diet-induced hypercholesterolemia mice
Lin Ding, Shan Ren, Yaoxin Song, Chuangang Zang, Yuchao Liu, Hao Guo, Wenqing Yang, Hong Guan, Jicheng Liu
Frontiers in Nutrition.2022;[Epub] CrossRef - Reclassification of Streptococcus ilei as a later heterotypic synonym of Streptococcus koreensis based on whole-genome sequence analysis
Sanjeet Kumar, Kanika Bansal, Santosh Kumar Sethi
Archives of Microbiology.2022;[Epub] CrossRef
- A metagenomic study of the gut microbiome in patients with type 2 diabetes mellitus and myocardial infarction
- Deodorization of Pig Slurry and Characterization of Bacterial Diversity Using 16S rDNA Sequence Analysis
- Ok-Hwa Hwang , Sebastian Raveendar , Young-Ju Kim , Ji-Hun Kim , Tae-Hun Kim , Dong-Yoon Choi , Che Ok Jeon , Sung-Back Cho , Kyung-Tai Lee
- J. Microbiol. 2014;52(12):1056-1056.
- DOI: https://doi.org/10.1007/s12275-014-0704-0
- 368 View
- 0 Download
- 1 Scopus
-
Abstract
PDF
- In the article by Hwang et al. published in Journal of Microbiology 2014; 52, 918-919. Jung-Woo Choi was omitted as the 5th author of this paper. The authors should be Ok-Hwa Hwang1†, Sebastian Raveendar1†, Young-Ju Kim1, Ji-Hun Kim1, Jung-Woo Choi1, Tae-Hun Kim1, Dong-Yoon Choi1, Che Ok Jeon2*, Sung-Back Cho1*, and Kyung-Tai Lee1*
Research Support, Non-U.S. Gov't
- Arthrobacter soli sp. nov., a Novel Bacterium Isolated from Wastewater Reservoir Sediment
- Seong Woon Roh , Youlboong Sung , Young-Do Nam , Ho-Won Chang , Kyoung-Ho Kim , Jung-Hoon Yoon , Che Ok Jeon , Hee-Mock Oh , Jin-Woo Bae
- J. Microbiol. 2008;46(1):40-44.
- DOI: https://doi.org/10.1007/s12275-007-0239-8
- 759 View
- 1 Download
- 74 Crossref
-
Abstract
PDF
- A novel Gram-positive bacterium, designated SYB2T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Micrococcaceae. SYB2T and Arthrobacter protophormiae ATCC 19271T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was anteiso-C15:0, anteiso-C17:0, iso-C16:0, and iso-C15:0. Analysis of 16S rRNA gene sequences and DNA-DNA relatedness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2T and other Arthrobacter species. The type strain of the novel species was identified as SYB2T (= KCTC 19291T= DSM 19449T).
-
Citations
Citations to this article as recorded by- Are Autochthonous Bacteria of Desert Root Environments Capable of Increasing Crop Tolerance to Saline Stress?
Vincenzo Aurilia, Alessandra Ruggiero, Cuihua Huang, Jing Pan, Xian Xue, Anna Tedeschi
Plants.2026; 15(6): 892. CrossRef - Dependence of the Adaptation of the Strain Glutamicibacter sp. SMB32 to a High Salinity Environment Depending on Growth Stage and Temperature
L. N. Anan’ina, A. A. Gorbunov, E. A. Shestakova
Moscow University Biological Sciences Bulletin.2025; 80(1): 14. CrossRef - Characterization of natural therapeutic compounds producing novel bacterial strains isolated from Hyderabad, India
Anushka Bhrdwaj, Anuraj Nayarisseri, Sanjeev Kumar Singh
Scientific Reports.2025;[Epub] CrossRef - Dependence of the adaptation of the strain Glutamicibacter sp. SMB32 to high salinity environment depending on growth stage and temperature
L. N. Anan’ina, A. A. Gorbunov, E. A. Shestakova
Vestnik Moskovskogo universiteta. Seria 16. Biologia.2025; 80(№1, 2025): 18. CrossRef - Intestinal microbial diversity in domestic honey bees and evaluation of their probiotic properties
Eui-Sang Cho, Hyun Jee Kim, Jeong Hyeon Lee, Chi Young Hwang, Inonge Noni Siziya, Hyung Wook Kwon, Myung-Ji Seo
Journal of Apicultural Research.2025; 64(3): 830. CrossRef - Investigation of airborne bacteria in wood ear mushroom cultivation houses
Soo Young Chi, Seong Hwan Kim, Won Ho Lee
Journal of Odor and Indoor Environment.2024; 23(2): 124. CrossRef - Genomic and Physiological Characterization of Metabacillus flavus sp. nov., a Novel Carotenoid-Producing Bacilli Isolated from Korean Marine Mud
Chi Young Hwang, Eui-Sang Cho, Deok Jun Yoon, In-Tae Cha, Dong-Hyun Jung, Young-Do Nam, So-Lim Park, Seong-Il Lim, Myung-Ji Seo
Microorganisms.2022; 10(5): 979. CrossRef - Arthrobacter wenxiniae sp. nov., a novel plant growth-promoting rhizobacteria species harbouring a carotenoids biosynthetic gene cluster
Yu-chen Sun, Pengbo Sun, Jing Xue, Yunpeng Du, Hui Yan, Li-wei Wang, Xin-xin Yi, Jian-guang Sun, Xiuhai Zhang, Jun-lian Gao
Antonie van Leeuwenhoek.2022; 115(3): 353. CrossRef - The Role of the Microbiota in Regeneration-Associated Processes
Lymarie M. Díaz-Díaz, Andrea Rodríguez-Villafañe, José E. García-Arrarás
Frontiers in Cell and Developmental Biology.2022;[Epub] CrossRef - Paenibacillus mellifer sp. nov., isolated from gut of the honey bee Apis mellifera
Eui-Sang Cho, Chi Young Hwang, Hyung Wook Kwon, Myung-Ji Seo
Archives of Microbiology.2022;[Epub] CrossRef - Fibrivirga algicola gen. nov., sp. nov., an algicidal bacterium isolated from a freshwater river
Sanghwa Park, Ja Young Cho, Dong-Hyun Jung, Seok Won Jang, Jung Hye Eom, Seung Won Nam, Dae Ryul Kwon, Jaewon Ryu, Keug Tae Kim
Antonie van Leeuwenhoek.2022; 115(7): 899. CrossRef -
Limnovirga soli gen. nov., sp. nov., isolated from river sediment
Kyung June Yim, Dong-Hyun Jung, Seok Won Jang, Sanghwa Park
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef - Halobellus ruber sp. nov., a deep red-pigmented extremely halophilic archaeon isolated from a Korean solar saltern
Chi Young Hwang, Eui-Sang Cho, Deok Jun Yoon, Myung-Ji Seo
Antonie van Leeuwenhoek.2021; 114(7): 997. CrossRef - Glutamicibacter mishrai sp. nov., isolated from the coral Favia veroni from Andaman Sea
Lipika Das, Sushanta Deb, Subrata K. Das
Archives of Microbiology.2020; 202(4): 733. CrossRef - Hymenobacter lutimineralis sp. nov., belonging to the family Hymenobacteraceae, isolated from zeolite
Eui-Sang Cho, So-Lim Park, Young-Do Nam, Seong-Il Lim, Dae-Young Kim, Dong-Hyun Jung, Jae-Hwan Kim, Myung-Ji Seo
Antonie van Leeuwenhoek.2020; 113(7): 947. CrossRef - Roseovarius faecimaris sp. nov., isolated from a tidal flat
In-Tae Cha, Eui-Sang Cho, Hak-Jong Choi, Seong Woon Roh, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2019; 69(5): 1465. CrossRef - Inhibitory effect of Bacillus velezensis on biofilm formation by Streptococcus mutans
Yesol Yoo, Dong-Ho Seo, Hyunjin Lee, Eui-Sang Cho, Nho-Eul Song, Tea Gyu Nam, Young-Do Nam, Myung-Ji Seo
Journal of Biotechnology.2019; 298: 57. CrossRef - Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
Yeon Bee Kim, Joon Yong Kim, Hye Seon Song, Changsu Lee, Seung Woo Ahn, Se Hee Lee, Min Young Jung, Jin-Kyu Rhee, Juseok Kim, Dong-Wook Hyun, Jin-Woo Bae, Seong Woon Roh
Scientific Reports.2018;[Epub] CrossRef - Zunongwangia flava sp. nov., belonging to the family Flavobacteriaceae, isolated from Salicornia europaea
Eui-Sang Cho, In-Tae Cha, Hak-Jong Choi, Seong Woon Roh, Young-Do Nam, Sung Man Seo, Myung-Ji Seo
Journal of Microbiology.2018; 56(12): 868. CrossRef - Flavimarina flava sp. nov., isolated from Salicornia herbacea
Eui-Sang Cho, In-Tae Cha, Jung-Min Park, Hak-Jong Choi, Jong Hun Lee, Seong Woon Roh, Eun-Ah Cho, Mee-Hyang Kweon, Young-Do Nam, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2017; 67(10): 4240. CrossRef - Paenibacillus arcticus sp. nov., isolated from Arctic soil
In-Tae Cha, Eui-Sang Cho, Yesol Yoo, Yoon Ji Seok, Inhye Park, Hee Seon Lim, Jung-Min Park, Seong Woon Roh, Young-Do Nam, Hak-Jong Choi, Yoo Kyung Lee, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2017; 67(11): 4385. CrossRef - Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat
In-Tae Cha, Eui-Sang Cho, Jung-Min Park, Jung-Yong Yeh, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 5205. CrossRef - Aquimarina versatilis sp. nov., isolated from seashore sand, and emended description of the genus Aquimarina
Jae Kook Lee, In-Tae Cha, Minwook Kim, Bong-geun Choi, Hye Seon Song, Joon Yong Kim, Seong Woon Roh, Sung-Jae Lee
International Journal of Systematic and Evolutionary Microbiology.2017; 67(2): 411. CrossRef - Molecular Analysis of Arthrobacter Myovirus vB_ArtM-ArV1: We Blame It on the Tail
Laura Kaliniene, Eugenijus Šimoliūnas, Lidija Truncaitė, Aurelija Zajančkauskaitė, Juozas Nainys, Algirdas Kaupinis, Mindaugas Valius, Rolandas Meškys, Rozanne M. Sandri-Goldin
Journal of Virology.2017;[Epub] CrossRef - Thalassobius litorarius sp. nov., isolated from a tidal flat
Inhye Park, In-Tae Cha, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2016; 66(4): 1666. CrossRef -
Genome Sequence of
Arthrobacter antarcticus
Strain W2, Isolated from a Slaughterhouse
Jakob Herschend, Prem K. Raghupathi, Henriette L. Røder, Søren J. Sørensen, Mette Burmølle
Genome Announcements.2016;[Epub] CrossRef - Detailed analyses of the bacterial populations in processed cocoa beans of different geographic origin, subject to varied fermentation conditions
Cristian Bortolini, Vania Patrone, Edoardo Puglisi, Lorenzo Morelli
International Journal of Food Microbiology.2016; 236: 98. CrossRef - Review of the taxonomy of the genus Arthrobacter, emendation of the genus Arthrobacter sensu lato, proposal to reclassify selected species of the genus Arthrobacter in the novel genera Glutamicibacter gen. nov., Paeniglutamicibacter gen. nov., Pseudogluta
Hans-Jürgen Busse
International Journal of Systematic and Evolutionary Microbiology.2016; 66(1): 9. CrossRef - Halostella salina gen. nov., sp. nov., an extremely halophilic archaeon isolated from solar salt
Hye Seon Song, In-Tae Cha, Jin-Kyu Rhee, Kyung June Yim, Ah Yoon Kim, Jong-Soon Choi, Su Jeong Baek, Myung-Ji Seo, Soo-Je Park, Young-Do Nam, Seong Woon Roh
International Journal of Systematic and Evolutionary Microbiology.2016; 66(7): 2740. CrossRef - Arthrobacter echini sp. nov., isolated from the gut of a purple sea urchin, Heliocidaris crassispina
June-Young Lee, Dong-Wook Hyun, Pil Soo Kim, Hyun Sik Kim, Na-Ri Shin, Ji-Hyun Yun, Mi-Ja Jung, Min-Soo Kim, Tae Woong Whon, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2016; 66(4): 1887. CrossRef - Pseudoruegeria aestuarii sp. nov., of the family Rhodobacteraceae, isolated from a tidal flat
In-Tae Cha, Inhye Park, Hae-Won Lee, Hyunjin Lee, Jung-Min Park, Seong Woon Roh, Hak-Jong Choi, Young-Do Nam, Yoo Kyung Lee, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2016; 66(8): 3125. CrossRef - Vulcanisaeta thermophila sp. nov., a hyperthermophilic and acidophilic crenarchaeon isolated from solfataric soil
Kyung June Yim, In-Tae Cha, Jin-Kyu Rhee, Hye Seon Song, Dong-Wook Hyun, Hae-Won Lee, Daekyung Kim, Kil-Nam Kim, Young-Do Nam, Myung-Ji Seo, Jin-Woo Bae, Seong Woon Roh
International Journal of Systematic and Evolutionary Microbiology.2015; 65(Pt_1): 201. CrossRef - Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt
In-Tae Cha, Kyung June Yim, Hye Seon Song, Hae-Won Lee, Dong-Wook Hyun, Kil-Nam Kim, Jong-Soon Choi, Daekyung Kim, Sung-Jae Lee, Myung-Ji Seo, Hak-Jong Choi, Jin-Woo Bae, Sung-Keun Rhee, Seong Woon Roh, Young-Do Nam
Antonie van Leeuwenhoek.2014; 105(5): 907. CrossRef - Citrimicrobium luteum gen. nov., sp. nov., aerobic anoxygenic phototrophic bacterium isolated from the gut of a sea cucumber Stichopus japonicus
Hong-Joo Jung, In-Tae Cha, Kyung June Yim, Hye Seon Song, Kichul Cho, Daekyung Kim, Hae-Won Lee, Jae Kook Lee, Myung-Ji Seo, Seong Woon Roh, Sung-Jae Lee
Journal of Microbiology.2014; 52(10): 819. CrossRef - Halobellus rufus sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt
In-Tae Cha, Kyung June Yim, Hye Seon Song, Hae-Won Lee, Dong-Wook Hyun, Kil-Nam Kim, Myung-Ji Seo, Daekyung Kim, Jong-Soon Choi, Sung-Jae Lee, Jin-Woo Bae, Sung-Keun Rhee, Hak-Jong Choi, Jin-Kyu Rhee, Young-Do Nam, Seong Woon Roh
Antonie van Leeuwenhoek.2014; 105(5): 925. CrossRef - Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome
Eugenijus Šimoliūnas, Laura Kaliniene, Miroslav Stasilo, Lidija Truncaitė, Aurelija Zajančkauskaitė, Juozas Staniulis, Juozas Nainys, Algirdas Kaupinis, Mindaugas Valius, Rolandas Meškys, Adam Driks
PLoS ONE.2014; 9(10): e111230. CrossRef - Halorubrum halophilum sp. nov., an extremely halophilic archaeon isolated from a salt-fermented seafood
Kyung June Yim, In-Tae Cha, Hae-Won Lee, Hye Seon Song, Kil-Nam Kim, Sung-Jae Lee, Young-Do Nam, Dong-Wook Hyun, Jin-Woo Bae, Sung-Keun Rhee, Myung-Ji Seo, Jong-Soon Choi, Hak-Jong Choi, Seong Woon Roh, Daekyung Kim
Antonie van Leeuwenhoek.2014; 105(3): 603. CrossRef - Halococcus sediminicola sp. nov., an extremely halophilic archaeon isolated from a marine sediment
Kyung June Yim, In-Tae Cha, Tae Woong Whon, Hae-Won Lee, Hye Seon Song, Kil-Nam Kim, Young-Do Nam, Sung-Jae Lee, Jin-Woo Bae, Sung-Keun Rhee, Jong-Soon Choi, Myung-Ji Seo, Seong Woon Roh, Daekyung Kim
Antonie van Leeuwenhoek.2014; 105(1): 73. CrossRef - Halapricum salinum gen. nov., sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt
Hye Seon Song, In-Tae Cha, Kyung June Yim, Hae-Won Lee, Dong-Wook Hyun, Sung-Jae Lee, Sung-Keun Rhee, Kil-Nam Kim, Daekyung Kim, Jong-Soon Choi, Myung-Ji Seo, Hak-Jong Choi, Jin-Woo Bae, Jin-Kyu Rhee, Young-Do Nam, Seong Woon Roh
Antonie van Leeuwenhoek.2014; 105(5): 979. CrossRef - Draft Genome Sequence of Arthrobacter crystallopoietes Strain BAB-32, Revealing Genes for Bioremediation
M. N. Joshi, A. S. Pandit, A. Sharma, R. V. Pandya, S. M. Desai, A. K. Saxena, S. B. Bagatharia
Genome Announcements.2013;[Epub] CrossRef -
Lactobacillus kimchiensis sp. nov., isolated from a fermented food
Jandi Kim, Joon Yong Kim, Min-Soo Kim, Seong Woon Roh, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_4): 1355. CrossRef - Paenibacillus marinisediminis sp. nov., a bacterium isolated from marine sediment
Hae-Won Lee, Seong Woon Roh, Kyung June Yim, Na-Ri Shin, Jina Lee, Tae Woong Whon, Joon Yong Kim, Dong-Wook Hyun, Daekyung Kim, Jin-Woo Bae
Journal of Microbiology.2013; 51(3): 312. CrossRef -
Gillisia marina sp. nov., from seashore sand, and emended description of the genus
Gillisia
Seong Woon Roh, Myunglip Lee, Hae-Won Lee, Kyung June Yim, Soo Yeon Heo, Kil-Nam Kim, Changmann Yoon, Young-Do Nam, Joon Yong Kim, Dong-Wook Hyun, Jin-Woo Bae, Joon Bum Jeong, Heewan Kang, Daekyung Kim
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_10): 3640. CrossRef - Rhodopirellula rosea sp. nov., a novel bacterium isolated from an ark clam Scapharca broughtonii
Seong Woon Roh, Hae-Won Lee, Kyung June Yim, Na-Ri Shin, Jina Lee, Tae Woong Whon, Na-Lae Lim, Daekyung Kim, Jin-Woo Bae
Journal of Microbiology.2013; 51(3): 301. CrossRef -
Paenibacillus oceanisediminis sp. nov. isolated from marine sediment
Jina Lee, Na-Ri Shin, Mi-Ja Jung, Seong Woon Roh, Min-Soo Kim, Jung-Sook Lee, Keun Chul Lee, Young-Ok Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_2): 428. CrossRef -
Ferrimonas
pelagia sp. nov., isolated from seawater
Kyung June Yim, Myunglip Lee, Hae-Won Lee, Kil-Nam Kim, Hye-Mi Yang, Mi-Ju Kim, Dong-Wook Hyun, Jin-Woo Bae, Young-Do Nam, Changmann Yoon, Moo-Sang Kim, Seong Woon Roh, Daekyung Kim
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_9): 3175. CrossRef -
Kistimonas scapharcae sp. nov., isolated from a dead ark clam (Scapharca broughtonii), and emended description of the genus
Kistimonas
Jina Lee, Na-Ri Shin, Hae-Won Lee, Seong Woon Roh, Min-Soo Kim, Young-Ok Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_12): 2865. CrossRef -
Tropicimonas sediminicola sp. nov., isolated from marine sediment
Na-Ri Shin, Seong Woon Roh, Min-Soo Kim, Bora Yun, Tae Woong Whon, Young-Ok Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_10): 2424. CrossRef -
Virgibacillus alimentarius sp. nov., isolated from a traditional Korean food
Jandi Kim, Mi-Ja Jung, Seong Woon Roh, Young-Do Nam, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2011; 61(12): 2851. CrossRef -
Microbacterium mitrae sp. nov., isolated from salted turban shell
Yun-Ji Kim, Seong Woon Roh, Mi-Ja Jung, Min-Soo Kim, Eun-Jin Park, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2011; 61(2): 399. CrossRef -
Dietzia alimentaria sp. nov., isolated from a traditional Korean food
Jandi Kim, Seong Woon Roh, Jung-Hye Choi, Mi-Ja Jung, Young-Do Nam, Min-Soo Kim, Eun-Jin Park, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2011; 61(9): 2254. CrossRef -
Arthrobacter livingstonensis sp. nov. and Arthrobacter cryotolerans sp. nov., salt-tolerant and psychrotolerant species from Antarctic soil
Lars Ganzert, Felizitas Bajerski, Kai Mangelsdorf, André Lipski, Dirk Wagner
International Journal of Systematic and Evolutionary Microbiology .2011; 61(4): 979. CrossRef - Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
Seong Woon Roh, Kyoung-Ho Kim, Young-Do Nam, Ho-Won Chang, Eun-Jin Park, Jin-Woo Bae
The ISME Journal.2010; 4(1): 1. CrossRef -
Kocuria koreensis sp. nov., isolated from fermented seafood
Eun-Jin Park, Seong Woon Roh, Min-Soo Kim, Mi-Ja Jung, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2010; 60(1): 140. CrossRef - Arthrobacter antarcticus sp. nov., isolated from an Antarctic marine sediment
Pavan Kumar Pindi, Ruth Manorama, Zareena Begum, S. Shivaji
International Journal of Systematic and Evolutionary Microbiology.2010; 60(10): 2263. CrossRef - Oceanobacillus kimchii sp. nov. Isolated from a traditional Korean fermented food
Tae Woong Whon, Mi-Ja Jung, Seong Woon Roh, Young-Do Nam, Eun-Jin Park, Kee-Sun Shin, Jin-Woo Bae
The Journal of Microbiology.2010; 48(6): 862. CrossRef -
Kocuria atrinae sp. nov., isolated from traditional Korean fermented seafood
Eun-Jin Park, Min-Soo Kim, Seong Woon Roh, Mi-Ja Jung, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2010; 60(4): 914. CrossRef - Haladaptatus cibarius sp. nov., an extremely halophilic archaeon from seafood, and emended description of the genus Haladaptatus
Seong Woon Roh, Myung-Lip Lee, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2010; 60(5): 1187. CrossRef -
Agromyces atrinae sp. nov., isolated from fermented seafood
Eun-Jin Park, Min-Soo Kim, Mi-Ja Jung, Seong Woon Roh, Ho-Won Chang, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2010; 60(5): 1056. CrossRef - Arthrobacter halodurans sp. nov., a new halotolerant bacterium isolated from sea water
Yi-Guang Chen, Shu-Kun Tang, Yu-Qin Zhang, Zhao-Yang Li, Lang-Bo Yi, Yong-Xia Wang, Wen-Jun Li, Xiao-Long Cui
Antonie van Leeuwenhoek.2009; 96(1): 63. CrossRef - Paracoccus aestuarii sp. nov., isolated from tidal flat sediment
S. W. Roh, Y.-D. Nam, H.-W. Chang, K.-H. Kim, M.-S. Kim, K.-S. Shin, J.-H. Yoon, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(4): 790. CrossRef - Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food
S. W. Roh, Y.-D. Nam, H.-W. Chang, K.-H. Kim, Y. Sung, M.-S. Kim, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(9): 2359. CrossRef - Nocardioides basaltis sp. nov., isolated from black beach sand
K.-H. Kim, S. W. Roh, H.-W. Chang, Y.-D. Nam, J.-H. Yoon, C. O. Jeon, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(1): 42. CrossRef - Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella
S. W. Roh, Y.-D. Nam, H.-W. Chang, K.-H. Kim, M.-S. Kim, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(2): 421. CrossRef - Sphingomonas aestuarii sp. nov., isolated from tidal flat sediment
S. W. Roh, K.-H. Kim, Y.-D. Nam, H.-W. Chang, M.-S. Kim, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(6): 1359. CrossRef - Halorubrum cibi sp. nov., an extremely halophilic archaeon from salt-fermented seafood
Seong Woon Roh, Jin-Woo Bae
The Journal of Microbiology.2009; 47(2): 162. CrossRef - Nitratireductor basaltis sp. nov., isolated from black beach sand
K.-H. Kim, S. W. Roh, H.-W. Chang, Y.-D. Nam, J.-H. Yoon, C. O. Jeon, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(1): 135. CrossRef - Phylogenetic Characterization of Two Novel Commensal Bacteria Involved with Innate Immune Homeostasis inDrosophila melanogaster
Seong Woon Roh, Young-Do Nam, Ho-Won Chang, Kyoung-Ho Kim, Min-Soo Kim, Ji-Hwan Ryu, Sung-Hee Kim, Won-Jae Lee, Jin-Woo Bae
Applied and Environmental Microbiology.2008; 74(20): 6171. CrossRef - Marinobacter goseongensis sp. nov., from seawater
S. W. Roh, Z.-X. Quan, Y.-D. Nam, H.-W. Chang, K.-H. Kim, S.-K. Rhee, H.-M. Oh, C. O. Jeon, J.-H. Yoon, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2008; 58(12): 2866. CrossRef - Genomics of biological wastewater treatment
Roland J. Siezen, Marco Galardini
Microbial Biotechnology.2008; 1(5): 333. CrossRef - List of new names and new combinations previously effectively, but not validly, published
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2008; 58(9): 1993. CrossRef - Luteimonas aestuarii sp. nov., isolated from tidal flat sediment
Seong Woon Roh, Kyoung-Ho Kim, Young-Do Nam, Ho-Won Chang, Min-Soo Kim, Jung-Hoon Yoon, Hee-Mock Oh, Jin-Woo Bae
The Journal of Microbiology.2008; 46(5): 525. CrossRef - Marinomonas basaltis sp. nov., a marine bacterium isolated from black sand
H.-W. Chang, S. W. Roh, K.-H. Kim, Y.-D. Nam, J.-H. Yoon, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2008; 58(12): 2743. CrossRef - Aliihoeflea aestuarii gen. nov., sp. nov., a novel bacterium isolated from tidal flat sediment
Seong Woon Roh, Kyoung-Ho Kim, Young-Do Nam, Ho-Won Chang, Min-Soo Kim, Kee-Sun Shin, Jung-Hoon Yoon, Hee-Mock Oh, Jin-Woo Bae
The Journal of Microbiology.2008; 46(5): 594. CrossRef
- Are Autochthonous Bacteria of Desert Root Environments Capable of Increasing Crop Tolerance to Saline Stress?
First
Prev
TOP
