Lysobacter daecheongensis sp. nov., Isolated from Sediment of Stream Near the Daechung Dam in South Korea

Leonid N. Ten; Hae-Min Jung; Wan-Taek Im; Soon-Ae Yoo; Sung-Taik Lee

doi:10.1007/s12275-008-0047-9

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Lysobacter daecheongensis sp. nov., Isolated from Sediment of Stream Near the Daechung Dam in South Korea: Leonid N. Ten ¹, Hae-Min Jung ², Wan-Taek Im ², Soon-Ae Yoo ¹, Sung-Taik Lee ²; Journal of Microbiology 2008;46(5):519-524.
DOI: https://doi.org/10.1007/s12275-008-0047-9
Published online: October 31, 2008

¹Department of Biology and Medicinal Science, Pai Chai University, Daejeon 302-735, Republic of Korea, ²Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Republic of Korea¹Department of Biology and Medicinal Science, Pai Chai University, Daejeon 302-735, Republic of Korea, ²Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Republic of Korea

Corresponding author: Wan-Taek Im , Tel: 82-42-869-5617,

Received: 15 February 2008 • Accepted: 12 August 2008

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Abstract

A Gram-negative, aerobic, rod shaped, non-spore-forming bacterial strain, designated Dae08T, was isolated from sediment of the stream near Daechung dam in South Korea, and was characterized in order to determine its taxonomic position, using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain Dae08T belongs to the family Xanthomonadaceae of the Gammaproteobacteria, and is related to Lysobacter brunescens ATCC 29482T (97.3%). The phylogenetic distances from any other species with validly published names within the genus Lysobacter were greater than 3.7%. The G+C contents of the genomic DNA of strain Dae08T was 69.3 mol%. The detection of a quinone system with Q-8 as the predominant compound and a fatty acid profile with iso-C15:0, iso-C17:1 ω9c, iso-C17:0, iso-C16:0, and iso-C11:0 3-OH as the major acids supported the affiliation of strain Dae08T to the genus Lysobacter. DNA-DNA relatedness between strain Dae08T and its phylogenetically closest neighbour was 28%. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain Dae08T (= KCTC 12600T) should be classified in the genus Lysobacter as the novel species, for which the name Lysobacter daecheongensis sp. nov. is proposed.

Keywords: 16S rRNA gene;Xanthomonadaceae;Lysobacter daecheongensis

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Lysobacter daecheongensis sp. nov., Isolated from Sediment of Stream Near the Daechung Dam in South Korea

J. Microbiol. 2008;46(5):519-524. Published online October 31, 2008

DOI: https://doi.org/10.1007/s12275-008-0047-9

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