Lysobacter panacihumi sp. nov., isolated from ginseng cultivated soil

Yue Huo; Jong-Pyo Kang; Joon Hurh; Yaxi Han; Jong-Chan Ahn; Ramya Mathiyalagan; Chunhong Piao; Deok-Chun Yang

doi:10.1007/s12275-018-8202-4

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Lysobacter panacihumi sp. nov., isolated from ginseng cultivated soil: Yue Huo ^1,2, Jong-Pyo Kang ¹, Joon Hurh ³, Yaxi Han ¹, Jong-Chan Ahn ³, Ramya Mathiyalagan ³, Chunhong Piao ², Deok-Chun Yang ^1,3; Journal of Microbiology 2018;56(10):748-752.
DOI: https://doi.org/10.1007/s12275-018-8202-4
Published online: September 28, 2018

¹Department of Oriental Medicinal Biotechnology, Kyung Hee University, Yongin 17104, Republic of Korea, ²College of Food Science and Engineering, Jilin Agricultural University, Changchun 130118, P. R. China, ³Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University, Yongin 17104, Republic of Korea

Corresponding author: Deok-Chun Yang , Tel: +82-31-201-2100;,

Received: 12 April 2018 • Revised: 21 June 2018 • Accepted: 25 June 2018

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Abstract

A Gram-negative, non-motile, aerobic, catalase-, and oxidasepositive bacterial strain, designated DCY117T, was isolated from ginseng cultivated soil in Gochang-gun, Republic of Korea, and was characterized taxonomically using a multifaceted approach. 16S rRNA gene sequence analysis revealed that strain DCY117T showed highest similarity to Lysobacter ruishenii CTN-1T (95.3%). Phylogenetic analysis revealed that closely related relatives of strain DCY117T were L. aestuarii S2-CT (95.1%), L. daejeonensis GH1-9T (95.0%), and L. caeni BUT-8T (94.9%). Diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), and phosphatidylethanolamine (PE) were the major polar lipids of strain DCY117T. The major isoprenoid quinone was Q-8. The major cellular fatty acids of strain DCY117T were iso-C15:0, iso-C16:0, and summed feature 9 (comprising iso-C17:1 ω9c and/or 10-methyl-C16:0). Genomic DNA G + C content was 61.8 mol%. On the basis of our findings, strain DCY117T is a novel species in the genus Lysobacter. We propose the name Lysobacter panacihumi sp. nov., and the type strain is DCY117T (= KCTC 62019T = JCM 32168T).

Keywords: Lysobacter panacihumi;ginseng cultivated soil;16S rRNA gene

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Lysobacter panacihumi sp. nov., isolated from ginseng cultivated soil

J. Microbiol. 2018;56(10):748-752. Published online September 28, 2018

DOI: https://doi.org/10.1007/s12275-018-8202-4

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