Genetic variation and phylogenetic relationships of the ectomycorrhizal Floccularia luteovirens on the Qinghai-Tibet Plateau

Rui Xing; Qing-bo Gao; Fa-qi Zhang; Peng-cheng Fu; Jiu-li Wang; Hui-ying Yan; Shi-long -Chen

doi:10.1007/s12275-017-7101-4

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Genetic variation and phylogenetic relationships of the ectomycorrhizal Floccularia luteovirens on the Qinghai-Tibet Plateau: Rui Xing ^1,2, Qing-bo Gao ¹, Fa-qi Zhang ^1,3, Peng-cheng Fu ¹, Jiu-li Wang ¹, Hui-ying Yan ¹, Shi-long -Chen ¹; Journal of Microbiology 2017;55(8):600-606.
DOI: https://doi.org/10.1007/s12275-017-7101-4
Published online: July 4, 2017

¹Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, 59 Xiguan Avenue, Xining Qinghai 810001, P. R. China, ²Key Laboratory of Crop Molecular Breeding of Qinghai Provice, P. R. China, ³Key Laboratory of Eco-Environments of Three Gorges Reservoir Region, Ministry of Education, School of Life Sciences, Southwest University, Chongqing 400715, P. R. China¹Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, 59 Xiguan Avenue, Xining Qinghai 810001, P. R. China, ²Key Laboratory of Crop Molecular Breeding of Qinghai Provice, P. R. China, ³Key Laboratory of Eco-Environments of Three Gorges Reservoir Region, Ministry of Education, School of Life Sciences, Southwest University, Chongqing 400715, P. R. China

Corresponding author: Shi-long -Chen , Tel: +86-0971-611002,

Received: 8 March 2017 • Revised: 1 June 2017 • Accepted: 7 June 2017

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Abstract

Floccularia luteovirens, as an ectomycorrhizal fungus, is widely distributed in the Qinghai-Tibet Plateau. As an edible fungus, it is famous for its unique flavor. Former studies mainly focus on the chemical composition and genetic structure of this species. However, the phylogenetic relationship between genotypes remains unknown. In this study, the genetic variation and phylogenetic relationship between the genotypes of F. luteovirens in Qinghai-Tibet Plateau was estimated through the analysis on two protein-coding genes (rpb1 and ef-1α) from 398 individuals collected from 24 wild populations. The sample covered the entire range of this species during all the growth seasons from 2011 to 2015. 13 genotypes were detected and moderate genetic diversity was revealed. Based on the results of network analysis, the maximum likelihood (ML), maximum parsimony (MP), and Bayesian inference (BI) analyses, the genotypes H-1, H-4, H-6, H-8, H-10, and H-11 were grouped into one clade. Additionally, a relatively higher genotype diversity (average h value is 0.722) and unique genotypes in the northeast edge of Qinghai- Tibet plateau have been found, combined with the results of mismatch analysis and neutrality tests indicated that Southeast Qinghai-Tibet plateau was a refuge for F. luteovirens during the historical geological or climatic events (uplifting of the Qinghai-Tibet Plateau or Last Glacial Maximum). Furthermore, the present distribution of the species on the Qinghai-Tibet plateau has resulted from the recent population expansion. Our findings provide a foundation for the future study of the evolutionary history and the speciation of this species.

Keywords: Floccularia luteovirens;Qinghai-Tibet Plateau;phylogenetics;phylogeography

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Genetic variation and phylogenetic relationships of the ectomycorrhizal Floccularia luteovirens on the Qinghai-Tibet Plateau

J. Microbiol. 2017;55(8):600-606. Published online July 4, 2017

DOI: https://doi.org/10.1007/s12275-017-7101-4

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