Dynamics of bacterial communities in rice field soils as affected by different long-term fertilization practices

Jae-Hyung Ahn; Shin Ae Lee; Jeong Myeong Kim; Myung-Sook Kim; Jaekyeong Song; Hang-Yeon Weon

doi:10.1007/s12275-016-6463-3

Articles

Page Path: HOME > J. Microbiol > Volume 54(11); 2016 > Article

Journal Article
Dynamics of bacterial communities in rice field soils as affected by different long-term fertilization practices: Jae-Hyung Ahn ¹, Shin Ae Lee ¹, Jeong Myeong Kim ¹, Myung-Sook Kim ², Jaekyeong Song ¹, Hang-Yeon Weon ¹; Journal of Microbiology 2016;54(11):724-731.
DOI: https://doi.org/10.1007/s12275-016-6463-3
Published online: October 29, 2016

¹Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju 55365, Republic of Korea, ²Soil and Ferilization Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Republic of Korea¹Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Wanju 55365, Republic of Korea, ²Soil and Ferilization Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju 55365, Republic of Korea

Corresponding author: Hang-Yeon Weon , Tel: -,

Received: 19 September 2016 • Revised: 11 October 2016 • Accepted: 13 October 2016

prev next

49 Views
0 Download
27 Crossref
28 Scopus

Full Article

Abstract

Fertilization and the response of the soil microbial community to the process significantly affect crop yield and the environment. In this study, the seasonal variation in the bacterial communities in rice field soil subjected to different fertilization treatments for more than 50 years was investigated using 16S rRNA sequencing. The simultaneous application of inorganic fertilizers and rice straw compost (CAPK) maintained the species richness of the bacterial communities at levels higher than that in the case of non-fertilization (NF) and application of inorganic fertilizers only (APK) in the initial period of rice growth. The seasonal variation in the bacterial community structure in the NF and APK plots showed cyclic behavior, suggesting that the effect of season was important; however, no such trend was observed in the CAPK plot. In the CAPK plot, the relative abundances of putative copiotrophs such as Bacteroidetes, Firmicutes, and Proteobacteria were higher and those of putative oligotrophs such as Acidobacteria and Plactomycetes were lower than those in the other plots. The relative abundances of organotrophs with respiratory metabolism, such as Actinobacteria, were lower and those of chemoautotrophs that oxidize reduced iron and sulfur compounds were higher in the CAPK plot, suggesting greater carbon storage in this plot. Increased methane emission and nitrogen deficiency, which were inferred from the higher abundances of Methylocystis and Bradyrhizobium in the CAPK plot, may be a negative effect of rice straw application; thus, a solution for these should be considered to increase the use of renewable resources in agricultural lands.

Keywords: rice;soil;bacterial community;16S rRNA;fertilization

Figure & Data

References

Citations

Citations to this article as recorded by

Ramifications of crop residue loading for soil microbial community composition, activity and nutrient supply
Newton Z. Lupwayi, Benjamin H. Ellert, Eric Bremer, Elwin G. Smith, Renee M. Petri, Jonathan A. D. Neilson, H. Henry Janzen
Soil Use and Management.2023; 39(1): 402. CrossRef
Three decades of organic manure and chemical fertilizers co-application enhanced rice productivity through increasing the diversity and key network module of soil bacterial community
Xiran Zhao, Jun Li, Xin Hu, Baowei Hu, Guixin Chu, Rui Tao
Journal of Soils and Sediments.2023; 23(5): 2175. CrossRef
A 40 % paddy surface soil organic carbon increase after 5-year no-tillage is linked with shifts in soil bacterial composition and functions
Jian-Ying Qi, Xiang-Bin Yao, Jian Lu, Long-Xin He, Jun-Li Cao, Zheng-Rong Kan, Xing Wang, Sheng-Gang Pan, Xiang-Ru Tang
Science of The Total Environment.2023; 859: 160206. CrossRef
Bacterial community of agricultural soils used for potato cultivation in Sverdlovsk region
E. P. Shanina, G. A. Lihodeevskiy
Agricultural Science Euro-North-East.2023; 24(6): 989. CrossRef
Ratio of carbon and nitrogen in fertilizer treatment drives distinct rhizosphere microbial community composition and co-occurrence networks
Ruifen Zhu, Chang Liu, Yuan Dong Xu, Wei He, Jielin Liu, Jishan Chen, Yajun An, Shangli Shi
Frontiers in Microbiology.2022;[Epub] CrossRef
The effect of environmental parameters and fertilization practices on yield and soil microbial diversity in a Kenyan paddy rice field
Markus Gorfer, Luigimaria Borruso, Evi Deltedesco, Emily W. Gichuhi, Daniel M. Menge, Daigo Makihara, Nadine Praeg, Stefano Cesco, Tanja Mimmo, Lutz Merbold, Sonja Leitner
Applied Soil Ecology.2022; 176: 104495. CrossRef
Bacterial Diversity and Potential Functions in Response to Long-Term Nitrogen Fertilizer on the Semiarid Loess Plateau
Aixia Xu, Lingling Li, Junhong Xie, Renzhi Zhang, Zhuzhu Luo, Liqun Cai, Chang Liu, Linlin Wang, Sumera Anwar, Yuji Jiang
Microorganisms.2022; 10(8): 1579. CrossRef
Continental-Scale Paddy Soil Bacterial Community Structure, Function, and Biotic Interaction
Hong-Yi Li, Hang Wang, Xin-Hua Tao, Xian-Zhe Wang, Wei-Zheng Jin, Jack A. Gilbert, Yong-Guan Zhu, Zhi-Jian Zhang, Elizabeth Anne Shank
mSystems.2021;[Epub] CrossRef
Methanogenesis and Methane Oxidation in Paddy Fields under Organic Fertilization
Chungwoo Kim, Denver I. Walitang, Tongmin Sa
Korean Journal of Environmental Agriculture.2021; 40(4): 295. CrossRef
Insights into endophytic bacterial diversity of rice grown across the different agro-ecological regions of West Bengal, India
Pranamita Kunda, Abhishek Mukherjee, Paltu Kumar Dhal
World Journal of Microbiology and Biotechnology.2021;[Epub] CrossRef
Response of root nutrient resorption strategies to rhizosphere soil microbial nutrient utilization along Robinia pseudoacacia plantation chronosequence
Miaoping Xu, Junnan Jian, Jiayi Wang, Zhenjiao Zhang, Gaihe Yang, Xinhui Han, Chengjie Ren
Forest Ecology and Management.2021; 489: 119053. CrossRef
Organic Manure Management Increases Soil Microbial Community Structure and Diversity in the Double-cropping Rice Paddy Field of Southern China
Chao Li, Lihong Shi, Haiming Tang, Kaikai Cheng, Li Wen, Weiyan Li, Xiaoping Xiao, Ke Wang
Communications in Soil Science and Plant Analysis.2021; 52(11): 1224. CrossRef
Soil microbial communities in tilled organic and no-till conventional crop production systems
Newton Z. Lupwayi, Cynthia A. Grant, John T. O’Donovan, Andrea H. Eastman, Greg Semach, Derrick A. Kanashiro, Renee M. Petri
Organic Agriculture.2021; 11(4): 553. CrossRef
Profiles of wheat rhizobacterial communities in response to repeated glyphosate applications, crop rotation, and tillage
Newton Z. Lupwayi, Myriam R. Fernandez, Derrick A. Kanashiro, Renee M. Petri, M. Anne Naeth
Canadian Journal of Soil Science.2021; 101(1): 157. CrossRef
Fifteen-year no tillage of a Mollisol with residue retention indirectly affects topsoil bacterial community by altering soil properties
Meng Li, Peng He, Xiao-Li Guo, Xingyi Zhang, Lu-Jun Li
Soil and Tillage Research.2021; 205: 104804. CrossRef
Impact of Maize–Mushroom Intercropping on the Soil Bacterial Community Composition in Northeast China
Xiaoqin Yang, Yang Wang, Luying Sun, Xiaoning Qi, Fengbin Song, Xiancan Zhu
Agronomy.2020; 10(10): 1526. CrossRef
Long-term effects of vegetation and soil on the microbial communities following afforestation of farmland with Robinia pseudoacacia plantations
Miaoping Xu, Dexin Gao, Shuyue Fu, Xuqiao Lu, Shaojun Wu, Xinhui Han, Gaihe Yang, Yongzhong Feng
Geoderma.2020; 367: 114263. CrossRef
Effects of short-term manure nitrogen input on soil microbial community structure and diversity in a double-cropping paddy field of southern China
Haiming Tang, Chao Li, Xiaoping Xiao, Lihong Shi, Kaikai Cheng, Li Wen, Weiyan Li
Scientific Reports.2020;[Epub] CrossRef
Different types of agricultural land use drive distinct soil bacterial communities
Shin Ae Lee, Jeong Myeong Kim, Yiseul Kim, Jae-Ho Joa, Seong-Soo Kang, Jae-Hyung Ahn, Mincheol Kim, Jaekyeong Song, Hang-Yeon Weon
Scientific Reports.2020;[Epub] CrossRef
Effects of long‐term fertilizer management on soil bacterial diversity in double‐cropping paddy field of southern China
Haiming Tang, Yilan Xu, Chao Li, Xiaoping Xiao, Kaikai Cheng, Lihong Shi, Xiaochen Pan, Weiyan Li, Li Wen
Agronomy Journal.2020; 112(5): 3644. CrossRef
Long-term phosphorus limitation changes the bacterial community structure and functioning in paddy soils
Sandipan Samaddar, Poulami Chatterjee, Jaak Truu, Rangasamy Anandham, Sukjin Kim, Tongmin Sa
Applied Soil Ecology.2019; 134: 111. CrossRef
Long-term silicate fertilization increases the abundance of Actinobacterial population in paddy soils
Sandipan Samaddar, Jaak Truu, Poulami Chatterjee, Marika Truu, Kiyoon Kim, Sukjin Kim, Sundaram Seshadri, Tongmin Sa
Biology and Fertility of Soils.2019; 55(2): 109. CrossRef
The bacterial community structure and functional profile in the heavy metal contaminated paddy soils, surrounding a nonferrous smelter in South Korea
Sherlyn C. Tipayno, Jaak Truu, Sandipan Samaddar, Marika Truu, Jens‐Konrad Preem, Kristjan Oopkaup, Mikk Espenberg, Poulami Chatterjee, Yeongyeong Kang, Kiyoon Kim, Tongmin Sa
Ecology and Evolution.2018; 8(12): 6157. CrossRef
Soil bacterial community responses to black medic cover crop and fertilizer N under no-till
Newton Z. Lupwayi, William E. May, Derrick A. Kanashiro, Renee M. Petri
Applied Soil Ecology.2018; 124: 95. CrossRef
Aquatic plant debris changes sediment enzymatic activity and microbial community structure
Wan-Lei Xue, Wei Pan, Qi Lu, Qian-Ru Xu, Cai-Nan Wu, Shao-Ting Du
Environmental Science and Pollution Research.2018; 25(22): 21801. CrossRef
Soil microbial community and activity are affected by integrated agricultural practices in China
X. C. Zhu, L. Y. Sun, F. B. Song, S. Q. Liu, F. L. Liu, X. N. Li
European Journal of Soil Science.2018; 69(5): 924. CrossRef
Pyrosequencing reveals profiles of soil bacterial communities after 12 years of conservation management on irrigated crop rotations
Newton Z. Lupwayi, Francis J. Larney, Robert E. Blackshaw, Derrick A. Kanashiro, Drusilla C. Pearson, Renee M. Petri
Applied Soil Ecology.2017; 121: 65. CrossRef

Cite this Article

Cite this Article: export Copy Download Format; Close

Download Citation

Download a citation file in RIS format that can be imported by all major citation management software, including EndNote, ProCite, RefWorks, and Reference Manager.

Format:

RIS — For EndNote, ProCite, RefWorks, and most other reference management software
BibTeX — For JabRef, BibDesk, and other BibTeX-specific software

Include:

Citation for the content below
Citation and abstract for the content below

Dynamics of bacterial communities in rice field soils as affected by different long-term fertilization practices

J. Microbiol. 2016;54(11):724-731. Published online October 29, 2016

DOI: https://doi.org/10.1007/s12275-016-6463-3

Related articles