Diversity of Bovine Rumen Methanogens In Vitro in the Presence of Condensed Tannins, as Determined by Sequence Analysis of 16S rRNA Gene Library

Hui Yin Tan; Chin Chin Sieo; Chin Mei Lee; Norhani Abdullah; Juan Boo Liang; Yin Wan Ho

doi:10.1007/s12275-011-0319-7

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Diversity of Bovine Rumen Methanogens In Vitro in the Presence of Condensed Tannins, as Determined by Sequence Analysis of 16S rRNA Gene Library: Hui Yin Tan ¹, Chin Chin Sieo ^1,2, Chin Mei Lee ¹, Norhani Abdullah ^1,2, Juan Boo Liang ¹, Yin Wan Ho ¹; Journal of Microbiology 2011;49(3):492-498.
DOI: https://doi.org/10.1007/s12275-011-0319-7
Published online: June 30, 2011

¹Institute of Bioscience, Universiti Putra Malaysia, 43400 UPM Serdang, Malaysia, ²Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Malaysia

Corresponding author: Yin Wan Ho , Tel: +6-03-8947-2161,

Received: 16 August 2010 • Accepted: 5 January 2011

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Abstract

Molecular diversity of rumen archaeal populations from bovine rumen fluid incubated with or without condensed tannins was investigated using 16S rRNA gene libraries. The predominant order of rumen archaea in the 16S rRNA gene libraries of the control and condensed tannins treatment was found to belong to a novel group of rumen archaea that is distantly related to the order Thermoplasmatales, with 59.5% (15 phylotypes) and 81.43% (21 phylotypes) of the total clones from the control and treatment clone libraries, respectively. The 16S rRNA gene library of the control was found to have higher proportions of methanogens from the orders Methanomicrobiales (32%) and Methanobacteriales (8.5%) as compared to those found in the condensed tannins treatment clone library in both orders (16.88% and 1.68% respectively). The phylotype distributed in the order Methanosarcinales was only found in the control clone library. The study indicated that condensed tannins could alter the diversity of bovine rumen methanogens.

Keywords: condensed tannins;methanogens;bovine rumen fluid;rumen archaeal diversity;gene library

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Diversity of Bovine Rumen Methanogens In Vitro in the Presence of Condensed Tannins, as Determined by Sequence Analysis of 16S rRNA Gene Library

J. Microbiol. 2011;49(3):492-498. Published online June 30, 2011

DOI: https://doi.org/10.1007/s12275-011-0319-7

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