Bacterial Diversity in the Sediment from Polymetallic Nodule Fields of the Clarion-Clipperton Fracture Zone

Chun-Sheng Wang; Li Liao; Hong-Xiang Xu; Xue-Wei Xu; Min Wu; Li-Zhong Zhu

doi:10.1007/s12275-010-0151-5

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Research Support, Non-U.S. Gov't
Bacterial Diversity in the Sediment from Polymetallic Nodule Fields of the Clarion-Clipperton Fracture Zone: Chun-Sheng Wang ^1,2,3, Li Liao ⁴, Hong-Xiang Xu ⁵, Xue-Wei Xu ^2,3, Min Wu ⁴, Li-Zhong Zhu ¹; Journal of Microbiology 2010;48(5):573-585.
DOI: https://doi.org/10.1007/s12275-010-0151-5
Published online: November 3, 2010

¹College of Environment and Resource Sciences, Zhejiang University, Hangzhou 310058, P. R. China, ²Laboratory of Marine Ecosystem and Biogeochemistry, State Oceanic Administration, Hangzhou 310012, P. R. China, ³Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, P. R. China, ⁴College of Life Sciences, Zhejiang University, Hangzhou 310058, P. R. China, ⁵College of Life Sciences, Wenzhou Medical College, Wenzhou 325035, P. R. China

Corresponding author: Chun-Sheng Wang , Tel: +86-571-8196-3205,

Received: 19 April 2010 • Accepted: 21 June 2010

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Abstract

The Clarion-Clipperton Fracture Zone (CCFZ) is located in the northeastern equatorial Pacific and contains abundant polymetallic nodules. To investigate its bacterial diversity, four libraries of 16S rRNA genes were constructed from sediments of four stations in different areas of the CCFZ. In total, 313 clones sequenced from the 4 libraries were assigned into 14 phylogenetic groups and 1 group of 28 unclassified bacteria. High bacterial diversity was predicted by the rarefaction analysis. The most dominant group overall was Proteobacteria, but there was variation in each library: Gammaproteobacteria was the most dominant group in two libraries, E2005-01 and ES0502, while Alphaproteobacteria and Deltaproteobacteria were the most dominant groups in libraries EP2005-03 and WS0505, respectively. Seven groups, including Alphaproteobacteria, Gammaproteobacteria, Deltaproteobacteria, Betaproteobacteria, Acidobacteria, Actinobacteria, and Bacteroidetes, were common to all four libraries. The remaining minor groups were distributed in libraries with different patterns. Most clones sequenced in this study were clustered with uncultured bacteria obtained from the environment, such as the ocean crust and marine sediment, but only distantly related to isolates. Bacteria involved in the cycling of metals, sulfur and nitrogen were detected, and their relationship with their habitat was discussed. This study sheds light on the bacterial communities associated with polymetallic nodules in the CCFZ and provides primary data on the bacterial diversity of this area.

Keywords: CCFZ;sediment;bacterial diversity;16S rRNA gene;polymetallic nodule

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Bacterial Diversity in the Sediment from Polymetallic Nodule Fields of the Clarion-Clipperton Fracture Zone

J. Microbiol. 2010;48(5):573-585. Published online November 3, 2010

DOI: https://doi.org/10.1007/s12275-010-0151-5

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