Panacagrimonas perspica gen. nov., sp. nov., a Novel Member of Gammaproteobacteria Isolated from Soil of a Ginseng Field

Wan-Taek Im; Qing-Mei Liu; Jung-Eun Yang; Min-Seok Kim; Se-Young Kim; Sung-Taik Lee; Tae-Hoo Yi

doi:10.1007/s12275-010-0067-0

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Panacagrimonas perspica gen. nov., sp. nov., a Novel Member of Gammaproteobacteria Isolated from Soil of a Ginseng Field: Wan-Taek Im ¹, Qing-Mei Liu ², Jung-Eun Yang ¹, Min-Seok Kim ², Se-Young Kim ¹, Sung-Taik Lee ², Tae-Hoo Yi ¹; Journal of Microbiology 2010;48(2):262-266.
DOI: https://doi.org/10.1007/s12275-010-0067-0
Published online: May 1, 2010

¹Department of Oriental Medicinal Material and Processing, College of Life Science, Kyung Hee University, Yongin 446-701, Republic of Korea, ²Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Republic of Korea

Corresponding author: Tae-Hoo Yi , Tel: +82-31-201-2609,

Received: 19 February 2010 • Accepted: 13 April 2010

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Abstract

A taxonomic study was carried out on Gsoil 142T, a bacterial strain isolated from the soil collected in a ginseng field in Pocheon province, South Korea. Comparative 16S rRNA gene sequence studies showed a clear affiliation of this bacterium to the Gammaproteobacteria, and it was most closely related to Hydrocarboniphaga effusa ATCC BAA 332T (94.4%, 16S rRNA gene sequence similarity), Nevskia ramosa DSM 11499T (94.1%) and Alkanibacter difficilis MN154.3T (92.0%). Strain Gsoil 142T was a Gram-negative, strictly aerobic, motile, and rod-shaped bacterium. The G+C content of the genomic DNA was 69.9% and predominant ubiquinone was Q-8. Major fatty acids were summed feature 8 (C18:1 w7c and/or w6c, 36.3%), summed feature 3 (iso-C15:0 2-OH and/or C16:1 w7c, 20.6%) and C16:0 (17.4%). The major polar lipids detected in strain Gsoil 142T were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unknown glycolipid. On the basis of polyphasic evidence, it is proposed that strain Gsoil 142T should be placed in a novel genus and species, for which the name Panacagrimonas perspica gen. nov., sp. nov. is proposed. The type strain is Gsoil 142T (=KCTC 12982T =LMG 23239T).

Keywords: 16S rRNA gene;polyphasic taxonomy;Panacagrimonas perspica gen. nov.;sp. nov.

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Panacagrimonas perspica gen. nov., sp. nov., a Novel Member of Gammaproteobacteria Isolated from Soil of a Ginseng Field

J. Microbiol. 2010;48(2):262-266. Published online May 1, 2010

DOI: https://doi.org/10.1007/s12275-010-0067-0

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