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- Comprehensive Analysis of Gut Microbiota Alteration in the Patients and Animal Models with Polycystic Ovary Syndrome
- Jing Zhou , Xuemei Qiu , Xuejing Chen , Sihan Ma , Zhaoyang Chen , Ruzhe Wang , Ying Tian , Yufan Jiang , Li Fan , Jingjie Wang
- J. Microbiol. 2023;61(9):821-836. Published online October 12, 2023
- DOI: https://doi.org/10.1007/s12275-023-00079-9
- 397 View
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- 9 Web of Science
- 9 Crossref
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Abstract
PDF - Polycystic ovary syndrome (PCOS) is a common disease of endocrine–metabolic disorder, and its etiology remains largely unknown. The gut microbiota is possibly involved in PCOS, while the association remains unclear. The comprehensive analysis combining gut microbiota with PCOS typical symptoms was performed to analyze the role of gut microbiota in PCOS in this study. The clinical patients and letrozole-induced animal models were determined on PCOS indexes and gut microbiota, and fecal microbiota transplantation (FMT) was conducted. Results indicated that the animal models displayed typical PCOS symptoms, including disordered estrous cycles, elevated testosterone levels, and ovarian morphological change; meanwhile, the symptoms were improved after FMT. Furthermore, the microbial diversity exhibited disordered, and the abundance of the genus Ruminococcus and Lactobacillus showed a consistent trend in PCOS rats and patients. The microbiota diversity and several key genera were restored subjected to FMT, and correlation analysis also supported relevant conclusions. Moreover, LEfSe analysis showed that Gemmiger, Flexispira, and Eubacterium were overrepresented in PCOS groups. Overall, the results indicate the involvement of gut microbiota in PCOS and its possible alleviation of endocrinal and reproductive dysfunctions through several special bacteria taxa, which can function as the biomarker or potential target for diagnosis and treatment. These results can provide the new insights for treatment and prevention strategies of PCOS.
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Citations
Citations to this article as recorded by
- Characteristics of Gut Microbiota in Patients with Polycystic Ovary Syndrome and Its Association with Metabolic Abnormalities: A Review
Shuang Liu, Linqi Cheng, Sen Li
International Journal of Women's Health.2025; Volume 17: 2165. CrossRef - Correlation of intestinal bacteria, fungi and dietary nutrient intake in NAFLD patients with spleen deficiency syndrome
Guiru Lin, Wanyi Ou, Jianmei Yang, Dongliang Chen, Yuanfei Wang, Aiping Wu, Lilian Gao, Wan Qu, Chenli Lin, Yinji Liang
Frontiers in Cellular and Infection Microbiology.2025;[Epub] CrossRef - Dysbiosis in PCOS: a systematic review of microbiome alterations across body sites with GRADE assessment of evidence quality
Navjot Kaur, Nisha Yadav, Sarika Sachan, Priya Sharma, Preeti Khetarpal
Physiological Genomics.2025; 57(12): 667. CrossRef - Gut-ovary axis in polycystic ovary syndrome: mechanistic insights and gut microbiota-targeted therapeutic strategies
Mei Zhao, Danlin Chen, Xiumei Hu, Caiping Xie, Lianwei Xu, Fuhua Zhou
Frontiers in Endocrinology.2025;[Epub] CrossRef - Journey through the gut-inflammation axis in polycystic ovary syndrome: the microbiota’s role in shaping inflammatory pathways
Ujjawal Sharma, Anidrisha Sahu, Neelam Thakur, Ranjay Kumar Choudhary, Himanshu Shekhar, Shafiul Haque, Hardeep Singh Tuli, Aygul Toktasynovna Aubakirova, Bunty Sharma
Molecular and Cellular Biochemistry.2025;[Epub] CrossRef - Combination metformin and liraglutide in PCOS: clinical efficacy in women and preclinical insights from gut microbiome modulation in rats
Xue-Feng Long, Yu-Qing Fang, Yan-Hui Li, Jing-Yi Li, Xiu-Ping Wang, Xiao-Li Wang, Ling Zhang, Yi Liu
Frontiers in Endocrinology.2025;[Epub] CrossRef - Gut Microbes in Polycystic Ovary Syndrome and Associated Comorbidities; Type 2 Diabetes, Non-Alcoholic Fatty Liver Disease (NAFLD), Cardiovascular Disease (CVD), and the Potential of Microbial Therapeutics
Vineet Singh, Kanika Mahra, DaRyung Jung, Jae-Ho Shin
Probiotics and Antimicrobial Proteins.2024; 16(5): 1744. CrossRef - Potential therapeutic application and mechanism of gut microbiota-derived extracellular vesicles in polycystic ovary syndrome
Liangliang Yang, Tingxiu Liu, Yan Liao, Yuehan Ren, Zheng Zheng, Mingyue Zhang, Yue Yu, Chang Liu, Chaoying Wang, Tong Chen, Lili Zhang, Dongxue Zheng, Haidan Zhao, Zhexin Ni, Xinmin Liu
Biomedicine & Pharmacotherapy.2024; 180: 117504. CrossRef - Research Advance on the Prevention and Treatment of Polycystic Ovary Syndrome Based on Dysbiosis of Gut Microbiota
钰炜 王
Advances in Clinical Medicine.2024; 14(08): 895. CrossRef
- Characteristics of Gut Microbiota in Patients with Polycystic Ovary Syndrome and Its Association with Metabolic Abnormalities: A Review
Review
- Envelope‑Stress Sensing Mechanism of Rcs and Cpx Signaling Pathways in Gram‑Negative Bacteria
- Seung-Hyun Cho , Kilian Dekoninck , Jean-Francois Collet
- J. Microbiol. 2023;61(3):317-329. Published online March 9, 2023
- DOI: https://doi.org/10.1007/s12275-023-00030-y
- 551 View
- 2 Download
- 21 Web of Science
- 21 Crossref
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Abstract
PDF
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The global public health burden of bacterial antimicrobial resistance (AMR) is intensified by Gram-negative bacteria,
which have an additional membrane, the outer membrane (OM), outside of the peptidoglycan (PG) cell wall. Bacterial twocomponent
systems (TCSs) aid in maintaining envelope integrity through a phosphorylation cascade by controlling gene
expression through sensor kinases and response regulators. In Escherichia coli, the major TCSs defending cells from envelope
stress and adaptation are Rcs and Cpx, which are aided by OM lipoproteins RcsF and NlpE as sensors, respectively. In
this review, we focus on these two OM sensors. β-Barrel assembly machinery (BAM) inserts transmembrane OM proteins
(OMPs) into the OM. BAM co-assembles RcsF, the Rcs sensor, with OMPs, forming the RcsF-OMP complex. Researchers
have presented two models for stress sensing in the Rcs pathway. The first model suggests that LPS perturbation stress
disassembles the RcsF-OMP complex, freeing RcsF to activate Rcs. The second model proposes that BAM cannot assemble
RcsF into OMPs when the OM or PG is under specific stresses, and thus, the unassembled RcsF activates Rcs. These two
models may not be mutually exclusive. Here, we evaluate these two models critically in order to elucidate the stress sensing
mechanism. NlpE, the Cpx sensor, has an N-terminal (NTD) and a C-terminal domain (CTD). A defect in lipoprotein trafficking
results
in NlpE retention in the inner membrane, provoking the Cpx response. Signaling requires the NlpE NTD, but not the NlpE CTD; however, OM-anchored NlpE senses adherence to a hydrophobic surface, with the NlpE CTD playing a key role in this function. -
Citations
Citations to this article as recorded by-
Cell wall hydrolases of
Escherichia coli
Shambhavi Garde, Debnita Mongal, Manjula Reddy, Kumaran S. Ramamurthi
Microbiology and Molecular Biology Reviews.2026;[Epub] CrossRef - Asymmetric envelope surface disposition of secreted protein YjbI controls bimodal antibiotic susceptibilities in C. crescentus
Jordan Costafrolaz, Laurence Degeorges, Gaël Panis, Simon-Ulysse Vallet, Manuel Velasco Gomariz, Fernando Teixeira Pinto Meireles, Matteo Dal Peraro, Kathrin S Fröhlich, Patrick H Viollier
The EMBO Journal.2026;[Epub] CrossRef - Pan-genome analysis of Morganella morganii reveals niche-specific selection of functional traits: friend or foe?
Rajesh Pal, Bhagyashri J. Poddar, Prabhakar D. Pandit, Hemant J. Purohit, Rahul Warke, Gangadhar M. Warke
Archives of Microbiology.2026;[Epub] CrossRef - Metal-based antimicrobial agents in wound Dressings: Infection management and the challenge of antibiotic resistance
Haoyang Peng, Deqiao Dong, Shiquan Feng, Yueping Guo, Jiaqi Yu, Changran Gan, Xue Hu, Zhenmao Qin, Yan Liu, Yanan Gao
Chemical Engineering Journal.2025; 507: 160726. CrossRef - Bacterial cell wall synthesis and recycling: new antimicrobial targets and vaccine development
Jihyeon Min, Bitnara Kim, Yerim Park, Yongjun Son, Woojun Park
Critical Reviews in Microbiology.2025; 51(6): 1364. CrossRef - Nitazoxanide inhibits pili assembly by targeting BamB to synergize with polymyxin B against drug-resistant Escherichia coli
Wenwen Li, Bingjie Ji, Boyu Li, Minghui Du, Linwei Wang, Jiale Tuo, Hongmei Zhou, Jian Gong, Yongshan Zhao
Biochimie.2025; 233: 47. CrossRef -
Complex interplay between gene deletions and the environment uncovers cellular roles for genes of unknown function in
Escherichia coli
Kaat Sondervorst, Kristina Nesporova, Matthew Herdman, Bart Steemans, Joëlle Rosseels, Sander K. Govers, Julia Willett
mSystems.2025;[Epub] CrossRef -
Genome-wide characterization of hypothiocyanite stress response in
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Julia D. Meredith, Michael J. Gray, Melissa M. Kendall
Journal of Bacteriology.2025;[Epub] CrossRef -
Terminal complement complexes with or without C9 potentiate antimicrobial activity against
Neisseria gonorrhoeae
Evan R. Lamb, Alison K. Criss, Mariagrazia Pizza
mBio.2025;[Epub] CrossRef - RcsB and H-NS Both Contribute to the Repression the Expression of the csgDEFG Operon
Hiroshi Ogasawara, Azusa Tomioka, Yuki Kato
Microorganisms.2025; 13(8): 1829. CrossRef - Targeting bacterial cell envelope stress responses to advance the next generation of antimicrobial approaches
Balarabe B. Ismail, Qiao He, Donghong Liu, Mingming Guo
Critical Reviews in Food Science and Nutrition.2025; : 1. CrossRef - Protein–Protein Interactions as Promising Molecular Targets for Novel Antimicrobials Aimed at Gram-Negative Bacteria
Piotr Maj, Joanna Trylska
International Journal of Molecular Sciences.2025; 26(22): 10861. CrossRef - Transcriptome reveals the role of the htpG gene in mediating antibiotic resistance through cell envelope modulation in Vibrio mimicus SCCF01
Zhenyang Qin, Kun Peng, Yang Feng, Yilin Wang, Bowen Huang, Ziqi Tian, Ping Ouyang, Xiaoli Huang, Defang Chen, Weimin Lai, Yi Geng
Frontiers in Microbiology.2024;[Epub] CrossRef - Rcs signal transduction system in Escherichia coli: Composition, related functions, regulatory mechanism, and applications
Zeyu Li, Yingying Zhu, Wenli Zhang, Wanmeng Mu
Microbiological Research.2024; 285: 127783. CrossRef - Identification of genes used by Escherichia coli to mitigate climatic stress conditions
Styliani Roufou, Sholeem Griffin, Lydia Katsini, Monika Polańska, Jan F.M. Van Impe, Panagiotis Alexiou, Vasilis P. Valdramidis
Gene Reports.2024; 36: 101998. CrossRef - The Role of Propionate-Induced Rearrangement of Membrane Proteins in the Formation of the Virulent Phenotype of Crohn’s Disease-Associated Adherent-Invasive Escherichia coli
Olga V. Pobeguts, Maria A. Galyamina, Elena V. Mikhalchik, Sergey I. Kovalchuk, Igor P. Smirnov, Alena V. Lee, Lyubov Yu. Filatova, Kirill V. Sikamov, Oleg M. Panasenko, Alexey Yu. Gorbachev
International Journal of Molecular Sciences.2024; 25(18): 10118. CrossRef - CpxAR two-component system contributes to virulence properties of Cronobacter sakazakii
Tong Jin, Xiangjun Zhan, Liuxin Pang, Bo Peng, Xinpeng Zhang, Wenxiu Zhu, Baowei Yang, Xiaodong Xia
Food Microbiology.2024; 117: 104393. CrossRef - Breaking Barriers: Exploiting Envelope Biogenesis and Stress Responses to Develop Novel Antimicrobial Strategies in Gram-Negative Bacteria
Renu Bisht, Pierre D. Charlesworth, Paola Sperandeo, Alessandra Polissi
Pathogens.2024; 13(10): 889. CrossRef - The protective role of potassium in the adaptation of Pseudomonas protegens SN15-2 to hyperosmotic stress
Jian Wang, Yaping Wang, Shouquan Lu, Haibo Lou, XiaoBing Wang, Wei Wang
Microbiological Research.2024; 289: 127887. CrossRef - Bacterial Regulatory Mechanisms for the Control of Cellular Processes: Simple Organisms’ Complex Regulation
Jin-Won Lee
Journal of Microbiology.2023; 61(3): 273. CrossRef - Physiological and Transcriptomic Analyses of Escherichia coli Serotype O157:H7 in Response to Rhamnolipid Treatment
Shuo Yang, Lan Ma, Xiaoqing Xu, Qing Peng, Huiying Zhong, Yuxin Gong, Linbo Shi, Mengxin He, Bo Shi, Yu Qiao
Microorganisms.2023; 11(8): 2112. CrossRef
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Cell wall hydrolases of
Escherichia coli
Journal Articles
- Fungal Catastrophe of a Specimen Room: Just One Week is Enough to Eradicate Traces of Thousands of Animals
- Ji Seon Kim , Yoonhee Cho , Chang Wan Seo , Ki Hyung Park , Shin Nam Yoo , Jun Won Lee , Sung Hyun Kim , Wonjun Lee , Young Woon Lim
- J. Microbiol. 2023;61(2):189-197. Published online February 6, 2023
- DOI: https://doi.org/10.1007/s12275-023-00017-9
- 411 View
- 0 Download
- 3 Web of Science
- 2 Crossref
-
Abstract
PDF
- Indoor fungi obtain carbon sources from natural sources and even recalcitrant biodegradable materials, such as plastics and synthetic dye. Their vigorous activity may have negative consequences, such as structural damage to building materials or the destruction of precious cultural materials. The animal specimen room of the Seoul National University stocked 36,000 animal resources that had been well-maintained for over 80 years. Due to abandonment without the management of temperature and humidity during the rainy summer season, many stuffed animal specimens had been heavily colonized by fungi. To investigate the fungal species responsible for the destruction of the historical specimens, we isolated fungi from the stuffed animal specimens and identified them at the species level based on morphology and molecular analysis of the β-tubulin (BenA) gene. A total of 365 strains were isolated and identified as 26 species in Aspergillus (10 spp.), Penicillium (14 spp.), and Talaromyces (2 spp.). Penicillium brocae and Aspergillus sydowii were isolated from most sections of the animal specimens and have damaged the feathers and beaks of valuable specimens. Our findings indicate that within a week of mismanagement, it takes only a few fungal species to wipe out the decades of history of animal diversity. The important lesson here is to prevent this catastrophe from occurring again through a continued interest, not to put all previous efforts to waste.
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Citations
Citations to this article as recorded by- Investigating the Role of Microclimate and Microorganisms in the Deterioration of Stone Heritage: The Case of Rupestrian Church from Jac, Romania
Dorina Camelia Ilieș, Andrei-Ionuț Apopei, Cristina Mircea, Alexandru Ilieș, Tudor Caciora, Berdenov Zharas, Lucian Barbu-Tudoran, Nicolaie Hodor, Alexandru Turza, Ana Cornelia Pereș, Thowayeb H. Hassan, Bahodirhon Safarov, Ioan-Cristian Noje
Applied Sciences.2024; 14(18): 8136. CrossRef - Fungal biodeterioration and preservation of cultural heritage, artwork, and historical artifacts: extremophily and adaptation
Geoffrey Michael Gadd, Marina Fomina, Flavia Pinzari, Mark D. Rose
Microbiology and Molecular Biology Reviews.2024;[Epub] CrossRef
- Investigating the Role of Microclimate and Microorganisms in the Deterioration of Stone Heritage: The Case of Rupestrian Church from Jac, Romania
- Promoter exchange of the cryptic nonribosomal peptide synthetase gene for oligopeptide production in Aspergillus oryzae
- Chanikul Chutrakul , Sarocha Panchanawaporn , Sukanya Jeennor , Jutamas Anantayanon , Kobkul Laoteng
- J. Microbiol. 2022;60(1):47-56. Published online November 9, 2021
- DOI: https://doi.org/10.1007/s12275-022-1442-3
- 383 View
- 0 Download
- 7 Web of Science
- 8 Crossref
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Abstract
PDF
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Oligopeptides with functional activities are of current interest
in the nutraceutical and medical sectors. The development of
the biosynthetic process of oligopeptides through a nonribosomal
peptide synthetase (NRPS) system has become more
challenging. To develop a production platform for nonribosomal
peptides (NRPs), reprogramming of transcriptional
regulation of the acv gene encoded ACV synthetase (ACVS)
was implemented in Aspergillus oryzae using the CRISPRCas9
system. Awakening silent acv expression was successfully
achieved by promoter substitution. Among the three exchanged
promoters, AoPgpdA, AoPtef1, and PtPtoxA, the
replacement of the native promoter with AoPgpdA led to the
highest ACV production in A. oryzae. However, the ACV production
of the AoPGpdA strain was also dependent on the
medium composition, in which urea was the best nitrogen
source, and a C:N ratio of 20:1 was optimal for tripeptide production.
In addition to cell growth, magnesium ions are an
essential element for ACV production and might participate
in ACVS activity. It was also found that ACV was the growthassociated
product of the engineered strain that might be a
result
of constitutive transcriptional control by the AoPgpdA promoter. This study offers a potential strategy for nonribosomal ACV production using the fungal system, which is applicable for redesigning bioactive oligopeptides with industrial relevance. -
Citations
Citations to this article as recorded by- Advances in Fungal Promoter Engineering for Enhancing Secondary Metabolite Biosynthesis
Nan Pu, Huawei Zhang
Biotechnology Journal.2025;[Epub] CrossRef - Strategies for the Enhancement of Secondary Metabolite Production via Biosynthesis Gene Cluster Regulation in Aspergillus oryzae
Xiao Jia, Jiayi Song, Yijian Wu, Sai Feng, Zeao Sun, Yan Hu, Mengxue Yu, Rui Han, Bin Zeng
Journal of Fungi.2024; 10(5): 312. CrossRef - Development of Aspergillus oryzae BCC7051 as a Robust Cell Factory Towards the Transcriptional Regulation of Protease-Encoding Genes for Industrial Applications
Sarocha Panchanawaporn, Chanikul Chutrakul, Sukanya Jeennor, Jutamas Anantayanon, Kobkul Laoteng
Journal of Fungi.2024; 11(1): 6. CrossRef - Transcriptome-based Mining of the Constitutive Promoters for Tuning Gene Expression in Aspergillus oryzae
Kobkul Laoteng, Jutamas Anantayanon, Chanikul Chutrakul, Sarocha Panchanawaporn, Sukanya Jeennor
Journal of Microbiology.2023; 61(2): 199. CrossRef - Efficient de novo production of bioactive cordycepin by Aspergillus oryzae using a food-grade expression platform
Sukanya Jeennor, Jutamas Anantayanon, Sarocha Panchanawaporn, Chanikul Chutrakul, Wanwipa Vongsangnak, Kobkul Laoteng
Microbial Cell Factories.2023;[Epub] CrossRef - Synthetic microbes and biocatalyst designs in Thailand
Duangthip Trisrivirat, Ruchanok Tinikul, Pimchai Chaiyen
Biotechnology Notes.2023; 4: 28. CrossRef - Potential of Aspergillus oryzae as a biosynthetic platform for indigoidine, a non-ribosomal peptide pigment with antioxidant activity
Sarocha Panchanawaporn, Chanikul Chutrakul, Sukanya Jeennor, Jutamas Anantayanon, Nakul Rattanaphan, Kobkul Laoteng, Daniel Cullen
PLOS ONE.2022; 17(6): e0270359. CrossRef - CRISPR/Cas9-Based Genome Editing and Its Application in Aspergillus Species
Feng-Jie Jin, Bao-Teng Wang, Zhen-Dong Wang, Long Jin, Pei Han
Journal of Fungi.2022; 8(5): 467. CrossRef
- Advances in Fungal Promoter Engineering for Enhancing Secondary Metabolite Biosynthesis
- Sequence analysis of the first B5 subgenogroup strain of enterovirus 71 isolated in Korea
- Yu Jung Won , Lae Hyung Kang , Ah Ra Lee , Bomina Paik , Hyun Kim , Sung Geun Lee , Seung Won Park , Seung Jin Hong , Soon Young Paik
- J. Microbiol. 2020;58(5):422-429. Published online March 28, 2020
- DOI: https://doi.org/10.1007/s12275-020-9539-z
- 227 View
- 0 Download
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Abstract
PDF
- Enterovirus A71 (EV71), the main etiological agent of handfoot- mouth disease (HFMD), circulates in many areas of the world and has caused large epidemics since 1997, especially in the Asia-Pacific region. In this study, we determined the full-genome sequence of CMC718, a newly isolated EV71 strain in Korea. The CMC718 genome was 7,415 nucleotides in length and was confirmed by whole-genome phylogenetic analysis to belong to the B5 genotype. In particular, CMC718 demonstrated maximum identity with strain M988 of the B5 genotype and numerous amino acid variants were detected in the 3D domain of the viral protein P3, which is consistent with the mutation pattern of a B5 strain isolated in 2012–2013. Comparison of the CMC718 sequence with other EV71 reference strains confirmed the relationship and genetic variation of CMC718. Our study was a full-genome sequence analysis of the first EV71 strain of the B5 genotype isolated in South Korea. This information will be a valuable reference for the development of methods for the detection of recombinant viruses, the tracking of infections, and the diagnosis of EV71.
- Development of a neutralization assay based on the pseudotyped chikungunya virus of a Korean isolate
- Woo-Chang Chung , Kwang Yeon Hwang , Suk-Jo Kang , Jae-Ouk Kim , Moon Jung Song
- J. Microbiol. 2020;58(1):46-53. Published online November 25, 2019
- DOI: https://doi.org/10.1007/s12275-020-9384-0
- 380 View
- 0 Download
- 10 Web of Science
- 6 Crossref
-
Abstract
PDF
- The Chikungunya virus (CHIKV) belongs to the Alphavirus genus of Togaviridae family and contains a positive-sense single stranded RNA genome. Infection by this virus mainly causes sudden high fever, rashes, headache, and severe joint pain that can last for several months or years. CHIKV, a mosquito- borne arbovirus, is considered a re-emerging pathogen that has become one of the most pressing global health concerns due to a rapid increase in epidemics. Because handling of CHIKV is restricted to Biosafety Level 3 (BSL-3) facilities, the evaluation of prophylactic vaccines or antivirals has been substantially hampered. In this study, we first identified the whole structural polyprotein sequence of a CHIKV strain isolated in South Korea (KNIH/2009/77). Phylogenetic analysis showed that this sequence clustered within the East/ Central/South African CHIKV genotype. Using this sequence information, we constructed a CHIKV-pseudotyped lentivirus expressing the structural polyprotein of the Korean CHIKV isolate (CHIKVpseudo) and dual reporter genes of green fluorescence protein and luciferase. We then developed a pseudovirus-based neutralization assay (PBNA) using CHIKVpseudo. Results from this assay compared to those from the conventional plaque reduction neutralization test showed that our PBNA was a reliable and rapid method to evaluate the efficacy of neutralizing antibodies. More importantly, the neutralizing activities of human sera from CHIKVinfected individuals were quantitated by PBNA using CHIKVpseudo. Taken together, these results suggest that our PBNA for CHIKV may serve as a useful and safe method for testing the neutralizing activity of antibodies against CHIKV in BSL-2 facilities.
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Citations
Citations to this article as recorded by- Pseudotyped Viruses: A Useful Platform for Pre-Clinical Studies Conducted in a BSL-2 Laboratory Setting
Sofiia N. Rizatdinova, Alina E. Ershova, Irina V. Astrakhantseva
Biomolecules.2025; 15(1): 135. CrossRef - Identification of RACK1 as a novel regulator of non-structural protein 4 of chikungunya virus
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Acta Biochimica et Biophysica Sinica.2024; 56(10): 1425. CrossRef - Facile quantitative diagnostic testing for neutralizing antibodies against Chikungunya virus
Hui-Chung Lin, Shu-Fen Chang, Chien-Ling Su, Huai-Chin Hu, Der-Jiang Chiao, Yu-Lin Hsu, Hsuan-ying Lu, Chang-Chi Lin, Pei-Yun Shu, Szu-Cheng Kuo
BMC Infectious Diseases.2024;[Epub] CrossRef - Development of a Novel Chikungunya Virus-Like Replicon Particle for Rapid Quantification and Screening of Neutralizing Antibodies and Antivirals
Hui-Chung Lin, Der-Jiang Chiao, Pei-Yun Shu, Hui-Tsu Lin, Chia-Chu Hsiung, Chang-Chi Lin, Szu-Cheng Kuo, Juan E. Ludert
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Chunyan Su, Kaiyun Ding, Jingwen Xu, Jianchao Wu, Jiansheng Liu, Jiayuan Shen, Hongning Zhou, Hongqi Liu
Scientific Reports.2022;[Epub] CrossRef - Prevalence of Malaria and Chikungunya Co-Infection in Febrile Patients: A Systematic Review and Meta-Analysis
Wanida Mala, Polrat Wilairatana, Kwuntida Uthaisar Kotepui, Manas Kotepui
Tropical Medicine and Infectious Disease.2021; 6(3): 119. CrossRef
- Pseudotyped Viruses: A Useful Platform for Pre-Clinical Studies Conducted in a BSL-2 Laboratory Setting
- Cohnella abietis sp. nov., isolated from Korean fir (Abies koreana) rhizospheric soil of Halla mountain
- Lingmin Jiang , Sophea Pheng , Keun Chul Lee , Se Won Kang , Jae Cheol Jeong , Cha Young Kim , Hyeong Cheol Park , Dae-Hyuk Kim , Suk Weon Kim , Song-Gun Kim , Jiyoung Lee
- J. Microbiol. 2019;57(11):953-958. Published online August 28, 2019
- DOI: https://doi.org/10.1007/s12275-019-9136-1
- 391 View
- 0 Download
- 12 Web of Science
- 12 Crossref
-
Abstract
PDF
- A strictly aerobic, motile, endospore-forming, rod-shaped bacterium, designated HS21T, was isolated from rhizospheric soil of the Korean fir tree (Abies koreana) from Halla mountain on Jeju island, Korea. Growth of strain HS21T was observed at pH 6.0–8.0 (optimum: pH 7.0), 0–2% (w/v) NaCl and 4–30°C (optimum: 25°C). A comparative analysis of 16S rRNA gene sequences showed that strain HS21T was most closely related to Cohnella luojiensis HY-22RT (97.6%), followed by C. lupini RLAHU4BT (97.4%) and C. collisoli NKM- 5T (97.2%). The genome of strain HS21T comprised a circular chromosome of 7,059,027 bp with 44.8% G + C content. The DNA-DNA relatedness values between strain HS21T and C. luojiensis HY-22RT and C. lupini RLAHU4BT were 18.1% and 13.8%, respectively. The major cellular fatty acids (> 5%) of the isolate were anteiso-C15:0, iso-C16:0, C16:0, and iso-C15:0. The polar lipids present were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, lysylphosphatidylglycerol, and three unidentified aminophospholipids. Based on its phenotypic, phylogenetic, genomic, and chemotaxonomic properties, strain HS21T represents a novel species of the genus Cohnella, for which the name Cohnella abietis sp. nov. is proposed. The type strain is HS21T (= KCTC 43028T = CCTCC AB 2019010T).
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International Journal of Systematic and Evolutionary Microbiology .2024;[Epub] CrossRef - Description and genomic characterization of Cohnella caldifontis sp. nov., isolated from hot springs in Yunnan province, south-west China
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Deeply branching
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Journal of Microbiology and Biotechnology.2023; 33(10): 1292. CrossRef - Pan-Genome Analyses of the Genus Cohnella and Proposal of the Novel Species Cohnella silvisoli sp. nov., Isolated from Forest Soil
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Flavobacterium litorale sp. nov., isolated from red alga
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International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef - Isolation of Saccharibacillus WB17 strain from wheat bran phyllosphere and genomic insight into the cellulolytic and hemicellulolytic complex of the Saccharibacillus genus
Ludovic Besaury, Mathilde Bocquart, Caroline Rémond
Brazilian Journal of Microbiology.2022; 53(4): 1829. CrossRef -
Cohnella terricola sp. nov., isolated from soil
Jiyoun Kim, Geeta Chhetri, Inhyup Kim, Minchung Kang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef -
Pedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila
Yuxin Peng, Lingmin Jiang, Jiyoon Seo, Zhun Li, Hanna Choe, Jae Cheol Jeong, Suk Weon Kim, Young-Min Kim, Cha Young Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef -
Cohnella fermenti sp. nov., isolated from a fermentation process
Shih-Yao Lin, Wen-Ming Chen, Asif Hameed, Guan-Hua Huang, Mei-Hua Hung, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2602. CrossRef
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Flavobacterium capsici sp. nov., isolated from the rhizospheric soils of bell pepper (Capsicum annuum L.)
- Molecular genomic characterization of severe fever with thrombocytopenia syndrome virus isolates from South Korea
- Yu Jung Won , Lae Hyung Kang , Sung Geun Lee , Seung Won Park , Jae Ik Han , Soon Young Paik
- J. Microbiol. 2019;57(10):927-937. Published online August 3, 2019
- DOI: https://doi.org/10.1007/s12275-019-9174-8
- 431 View
- 2 Download
- 10 Web of Science
- 10 Crossref
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Abstract
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- Severe fever with thrombocytopenia syndrome (SFTS) is a tick-borne emerging infectious disease caused by the SFTS virus (SFTSV) and is a threat to public health due to its high fatality rate. However, details on tick-to-human transmission of SFTSV are limited. In this study, we determined the wholegenome sequence of a South Korean SFTSV strain (CUKJJ01), compared it to those of other recent human SFTSV isolates, and identified the genetic variations and relationships among the SFTSV strains. The genome of CUK-JJ01 was consistent with the genome of other members of the genus Phlebovirus, including the large (L), medium (M), and small (S) segments of 6368, 3378, and 1744 nucleotides, respectively. Based on amino acid sequences of the M and S segments, which are used to distinguish the six SFTSV genotypes, CUK-JJ01 was classified as genotype B. Segment analysis revealed that the L, M, and S segments were 97.49%, 97.18%, and 97.94% similar to those of KAJNH2/2013/ Korea, ZJZHSH-FDE/2012/China, and KADGH/2013/Korea, respectively. Currently, only few studies on SFTSV have been conducted in Korean population and most were limited to serological analysis. Although the present study has limitations in terms of number of sample analyzed, the findings may serve as basis to understand the transmission and spread of SFTSV, as well as for the development of diagnostic and detection methods for viral recombinants by comparing the whole genome sequence of SFTSV isolates from South Korea and that of foreign isolates.
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Citations
Citations to this article as recorded by- Current status of severe fever with thrombocytopenia syndrome in China (Review)
Hao Sun, Quanman Hu, Saiwei Lu, Yanyan Yang, Li Zhang, Jinzhao Long, Yuefei Jin, Haiyan Yang, Shuaiyin Chen, Guangcai Duan
International Journal of Molecular Medicine.2025; 56(5): 1. CrossRef - The pathogen of SFTS: Bandavirus dabieense phylogenetic analysis and development of an online tool for genotyping
Hongxiao Wu, Tingting Liu, Yameng Mu, Ruihua Zhang, Jiale Yuan, Yanli Xu, Wenjing Niu, Yamin Sun, Wenchao Lin, Chuan Song, Wei Zhang, Ling Lin, Yuanyuan Zhang, Zhihai Chen
Acta Tropica.2025; 266: 107625. CrossRef - Whole-genome sequence analysis of SFTS bunyavirus in Huzhou, China
Deshun Xu, Lei Ji, Xiaofang Wu, Liping Chen, Paulo Lee Ho
PLOS ONE.2025; 20(2): e0318742. CrossRef - Circulation of tick-borne pathogens in wildlife of the Republic of Korea
Hye-ryung Byun, Seong-Ryeong Ji, Jun-Gu Kang, Chang-Yong Choi, Ki-Jeong Na, Jong-Taek Kim, Joon-Seok Chae
One Health.2024; 19: 100913. CrossRef - Molecular characterization of the genome of a new bunyavirus isolated in 2023 in Huzhou, China
Shili Song, Zhang Shen, Deshun Xu
Journal of Clinical Virology Plus.2024; 4(3): 100188. CrossRef - Multiple Genotypes and Reassortants of Severe Fever With Thrombocytopenia Syndrome Virus Co‐Circulating in Hangzhou in Southeastern China, 2013–2023
Yanping Wen, Zhimin Ni, Yan Hu, Jun Wu, Yezhen Fang, Guozhong Zhang, Renjie Huang, Shi Cheng, Feifei Cao, Qihao Xu, Yue Yu, Min Liu, Hongnv Yu, Liangliang Huo, Jun Li
Journal of Medical Virology.2024;[Epub] CrossRef - Genetic Diversity, Regional Distribution, and Clinical Characteristics of Severe Fever with Thrombocytopenia Syndrome Virus in Gangwon Province, Korea, a Highly Prevalent Region, 2019–2021
Mi-Young Moon, Hyeon Kyu Kim, Se-Jin Chung, Jae Hwan Byun, Ha-Na Kim, Woan Lee, Soon-Won Lee, Sezim Monoldorova, Sungkyeong Lee, Bo-Young Jeon, Eun-Joo Lim
Microorganisms.2023; 11(9): 2288. CrossRef - Identification of severe fever with thrombocytopenia syndrome virus genotypes in patients and ticks in Liaoning Province, China
Xiao-Hu Han, Yue Ma, Hong-Yan Liu, Dan Li, Yan Wang, Feng-Hua Jiang, Qing-Tian Gao, Feng Jiang, Bao-Shan Liu, Guo-Shun Shen, Ze-Liang Chen
Parasites & Vectors.2022;[Epub] CrossRef - Analysis of cross neutralizing activity of antibodies from sera of severe fever with thrombocytopenia syndrome patients to deal with different genotype strains
Jiaxin Xu, Yuanni Liu, Fan Zhang, Xin Wang, Weijin Huang, Yulong Wu, Boqing Li, Jiapeng Zhuang, Yixing Bing, Youchun Wang, Yuanyuan Qiao
Frontiers in Microbiology.2022;[Epub] CrossRef - Development of a real-time loop-mediated isothermal amplification method for the detection of severe fever with thrombocytopenia syndrome virus
Jae Woong Lee, Yu-Jung Won, Lae Hyung Kang, Sung-Geun Lee, Seung-Won Park, Soon-Young Paik
Journal of Microbiology.2020; 58(8): 711. CrossRef
- Current status of severe fever with thrombocytopenia syndrome in China (Review)
- Paenibacillus nuruki sp. nov., isolated from Nuruk, a Korean fermentation starter
- Soo-Jin Kim , Hayoung Cho , Jae-Hyung Ahn , Hang-Yeon Weon , Jae-Ho Joa , Jeong-Seon Kim , Soon-Wo Kwon
- J. Microbiol. 2019;57(10):836-841. Published online June 27, 2019
- DOI: https://doi.org/10.1007/s12275-019-9118-3
- 400 View
- 0 Download
- 5 Web of Science
- 5 Crossref
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Abstract
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- A Gram-stain-positive, rod-shaped, non-endospore-forming, motile by means of peritrichous flagella, facultatively anaerobic bacterium designated TI45-13arT was isolated from Nuruk, a Korean traditional Makgeolli fermentation starter. It grew at 4–35°C (optimum, 28–30°C), pH 5.0–9.0 (optimum, pH 7.0) and NaCl concentrations up to 5% (w/v). Phylogenetic trees generated using 16S rRNA gene sequences revealed that strain TI45-13arT belonged to the genus Paenibacillus and showed the highest sequence similarities with Paenibacillus kyungheensis DCY88T (98.5%), Paenibacillus hordei RH-N24T (98.4%) and Paenibacillus nicotianae YIM h-19T (98.1%). The major fatty acid was anteiso-C15:0. The DNA G+C content was 39.0 mol%, and MK-7 was the predominant isoprenoid quinone. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, three unidentified glycolipids, and one unidentified aminoglycolipid. The cell-wall peptidoglycan contained meso-diaminopimelic acid. On the basis of polyphasic taxonomy study, it was suggested that strain TI45-13arT represents a novel species within the genus Paenibacillus for which the name Paenibacillus nuruki sp. nov. is proposed. The type strain was TI45-13arT (= KACC 18728T = NBRC 112013T).
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Citations
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Louise Vermote, Byung Hee Chun, Shehzad Abid Khan, Luc De Vuyst, Che Ok Jeon, Stefan Weckx
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Paenibacillus dendrobii sp. nov., an indole-3-acetic acid-producing endophytic bacterium isolated from Dendrobium nobile
Yadong Hu, Hongjie Li, Yaoyi Chen, Qiling Zhang, Shigang Zheng, Dan Rao, Ze Chun, Ruoxi Zhao
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef - Makgeolli - The Traditional Choice of Korean Fermented Beverage from Cereal: An Overview on its Composition and Health Benefits
Ganesh SHIMOGA, Sang-Youn KIM
Food Science and Technology.2022;[Epub] CrossRef - Integrative Metagenomics–Metabolomics for Analyzing the Relationship Between Microorganisms and Non-volatile Profiles of Traditional Xiaoqu
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Frontiers in Microbiology.2021;[Epub] CrossRef - Flaviflexus ciconiae sp. nov., isolated from the faeces of the oriental stork, Ciconia boyciana
Jae-Yun Lee, Woorim Kang, Pil Soo Kim, So-Yeon Lee, Na-Ri Shin, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Yun-Seok Jeong, Jeong Eun Han, Mi-Ja Jung, Dong-Wook Hyun, Hyun Sik Kim, Euon Jung Tak, Jin-Woo Bae
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- Metagenomic and meta-metabolomic analysis of traditional Korean rice vinegar productions shows a large variability between producers
Review
- [MINIREVIEW] Taxonomic hierarchy of the phylum Firmicutes and novel Firmicutes species originated from various environments in Korea
- Chi Nam Seong , Joo Won Kang , Ji Hee Lee , So Yeon Seo , Jung Jae Woo , Chul Park , Kyung Sook Bae , Mi Sun Kim
- J. Microbiol. 2018;56(1):1-10. Published online January 4, 2018
- DOI: https://doi.org/10.1007/s12275-018-7318-x
- 623 View
- 1 Download
- 64 Crossref
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Abstract
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- This study assessed the taxonomic hierarchy of the phylum Firmicutes as well as elucidated the isolation and classification states of novel Firmicutes species isolated from Korean territory. The hierarchical classification system of the phylum Firmicutes has been developed since 1872 when the genus Bacillus was first reported and has been generally adopted since 2001. However, this taxonomic hierarchy is still being modified. Until Feb. 2017, the phylum Firmicutes consisted of seven classes (Bacilli, Clostridia, Erysipelotrichia, Limnochordia, Negativicutes, Thermolithobacteria, and Tissierellia), 13 orders, 45 families, and 421 genera. Firmicutes species isolated from various environments in Korea have been reported from 2000, and 187 species have been approved as of Feb. 2017. All Firmicutes species were affiliated with three classes (Bacilli, Clostridia, and Erysipelotrichia), four orders (Bacillales, Lactobacillales, Clostridiales, and Erysipelotrichales), 17 families, and 54 genera. A total of 173 species belong to the class Bacilli, of which 151 species were affiliated with the order Bacillales and the remaining 22 species with the order Lactobacillales. Twelve species belonging to the class Clostridia were affiliated within only one order, Clostridiales. The most abundant family was Bacillaceae (67 species), followed by the family Paenibacillaceae (56 species). Thirteen novel genera were created using isolates from the Korean environment. A number of Firmicutes species were isolated from natural environments in Korean territory. In addition, a considerable number of species were isolated from artificial resources such as fermented foods. Most Firmicutes species, belonging to the families Bacillaceae, Planococcaceae, and Staphylococcaceae, isolated from Korean fermented foods and solar salterns were halophilic or halotolerant. Firmicutes species were isolated from the whole territory of Korea, especially large numbers from Provinces Gyeonggi, Chungnam, and Daejeon.
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Chun Zhang, Xianglong Li, Longfei Yin, Cai Liu, Huawen Zou, Zhongyi Wu, Zhongbao Zhang
Annals of Microbiology.2019; 69(13): 1489. CrossRef - Phylogenetic diversity of aerobic spore-forming Bacillalles isolated from Brazilian soils
J. C. Orem, W. M. C. Silva, T. Raiol, M. I. Magalhães, P. H. Martins, D. A. Cavalcante, R. H. Kruger, M. M. Brigido, M. T. De-Souza
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Journal Articles
- Characterization and phylogenetic analysis of Varicella-zoster virus strains isolated from Korean patients
- Min Ho Kim , Jeong Seon Jeon , In Kyo Kim , Ji Seon Park , Hosun Park , Ok Sarah Shin , Chan Hee Lee
- J. Microbiol. 2017;55(8):665-672. Published online July 28, 2017
- DOI: https://doi.org/10.1007/s12275-017-7171-3
- 394 View
- 0 Download
- 6 Crossref
-
Abstract
PDF
- Varicella-zoster virus (VZV) is a causative agent of chickenpox in primary infection and shingles after its reactivation from latency. Complete or almost-complete genomic DNA sequences for various VZV strains have been reported. Recently, clinical VZV strains were isolated from Korean patients whose genome was sequenced using high-throughput sequencing technology. In this study, we analyzed single nucleotide polymorphism (SNP) of VZV strains to genetically characterize Korean clinical isolates. Phylogenetic analyses revealed that three Korean strains, YC01, YC02, and YC03, were linked to clade 2. Comprehensive SNP analysis identified 86 sites specific for the 5 VZV clades. VZV strains isolated from Korea did not form a phylogenetic cluster. Rather, YC02 and YC03 clustered strongly with Chinese strain 84-7 within clade 2, more specifically cluster 2a. Signature sequences for the cluster 2a were identified and found to play an important role in the separation of cluster 2a strains from other clade 2 strains, as shown in substitution studies. Further genetic analysis with additional strains isolated from Japan, China, and other Asian countries would provide a novel insight into the significance of two distinct subclades within clade 2.
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Human Vaccines & Immunotherapeutics.2023;[Epub] CrossRef - Assessment of attenuation of varicella‐zoster virus vaccines based on genomic comparison
Jae Yun Moon, Jina Seo, Jaewoo Lee, Daechan Park
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Duckhyang Shin, Younchul Shin, Eunmi Kim, Hyojung Nam, Haiyan Nan, Jaewoo Lee
BMC Immunology.2022;[Epub] CrossRef - Human herpesvirus diversity is altered in HLA class I binding peptides
William H. Palmer, Marco Telford, Arcadi Navarro, Gabriel Santpere, Paul J. Norman
Proceedings of the National Academy of Sciences.2022;[Epub] CrossRef - Genetic Change of Varicella-Zoster Virus Propagated in Cell Culture in Non-Natural Conditions
Sang Hoon Yeon, Ji Seon Park, Se Hwan Kang, Chan Hee Lee
Journal of Bacteriology and Virology.2021; 51(4): 178. CrossRef
- Varicella zoster virus mRNA vaccine candidate induced superior cellular immunity and comparable humoral and Fc-mediated immunity compared to the licensed subunit vaccine in a mouse model
- Gracilibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi§
- Young Joon Oh , Hae-Won Lee , Seul Ki Lim , Min-Sung Kwon , Jieun Lee , Ja-Young Jang , Hae Woong Park , Young-Do Nam , Myung-Ji Seo , Hak-Jong Choi
- J. Microbiol. 2016;54(9):588-593. Published online August 31, 2016
- DOI: https://doi.org/10.1007/s12275-016-6349-4
- 454 View
- 0 Download
- 14 Crossref
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Abstract
PDF
- A novel halophilic bacterium, strain K7T, was isolated from kimchi, a traditional Korean fermented food. The strain is Gram-positive, motile, and produces terminal endospores. The isolate is facultative aerobic and grows at salinities of 0.0–25.0% (w/v) NaCl (optimum 10–15% NaCl), pH 5.5–8.5 (optimum pH 7.0–7.5), and 15–42°C (optimum 37°C). The predominant isoprenoid quinone in the strain is menaquinone- 7 and the peptidoglycan of the strain is meso-diaminopimelic acid. The major fatty acids of the strain are anteisio- C15:0, iso-C15:0, and, C16:0 (other components were < 10.0%), while the major polar lipids are diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, and three unidentified lipids. A phylogenetic analysis of 16S rRNA gene sequence similarity showed that the isolated strain was a cluster of the genus Gracilibacillus. High levels of gene sequence similarity were observed between strain K7T and Gracilibacillus orientalis XH-63T (96.5%), and between the present strain and Gracilibacillus xinjiangensis (96.5%). The DNA G+C content of this strain is 37.7 mol%. Based on these findings, strain K7T is proposed as a novel species: Gracilibacillus kimchii sp. nov. The type strain is K7T (KACC 18669T; JCM 31344T).
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Citations
Citations to this article as recorded by- Gracilibacillus pellucidus sp. nov., a moderately halophilic bacterium isolated from saline soil in Xinjiang province, China
Zengqin Zhang, Hui Wang, Mengli Xia, Wenjing Li, Pan Zhang, Yanwei Wang, Linpei Liu, Peixin Li, Yong Zhuang, Furong Tan
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Virgibacillus saliphilus sp. nov. and Virgibacillus salidurans sp. nov., isolated from kimchi
Young Joon Oh, Joon Yong Kim, Min-Sung Kwon, Sulhee Lee, Sang-Pil Choi, Hak-Jong Choi
Journal of Microbiology.2025; 63(1): e:2501001. CrossRef - Synergistic improvement of humus formation in compost residue by fenton-like and effective microorganism composite agents
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Parthiban Subramanian, Yiseul Kim, Hanako Naito, Tomomi Asano, Moriyuki Hamada, Hang-Yeon Weon, Soon-Wo Kwon, Jun Heo
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Geomicrobiology Journal.2022; 39(3-5): 294. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - Characterization of β-galactosidase and α-galactosidase activities from the halophilic bacterium Gracilibacillus dipsosauri
Charles E. Deutch, Amy M. Farden, Emily S. DiCesare
Annals of Microbiology.2021;[Epub] CrossRef -
Gracilibacillus suaedae sp. nov., an indole acetic acid-producing endophyte isolated from a root of Suaeda salsa
Xiao-Xian Huang, Lian Xu, Ji-Quan Sun
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef - Genomic sequencing of Gracilibacillus dipsosauri reveals key properties of a salt-tolerant α-amylase
Charles E. Deutch, Shanshan Yang
Antonie van Leeuwenhoek.2020; 113(7): 1049. CrossRef - Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food
Young Joon Oh, Joon Yong Kim, Hee Eun Jo, Hyo Kyeong Park, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2020; 58(5): 387. CrossRef - Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
Young Joon Oh, Joon Yong Kim, Hyo Kyeong Park, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2019; 57(11): 997. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2019;[Epub] CrossRef - Salicibibacter kimchii gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium in the family Bacillaceae, isolated from kimchi
Ja-Young Jang, Young Joon Oh, Seul Ki Lim, Hyo Kyeong Park, Changsu Lee, Joon Yong Kim, Mi-Ai Lee, Hak-Jong Choi
Journal of Microbiology.2018; 56(12): 880. CrossRef - Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi
Young Joon Oh, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Jieun Lee, NamHee Kim, Mi-Young Shin, Hyo Kyeong Park, Myung-Ji Seo, Hak-Jong Choi
Journal of Microbiology.2017; 55(12): 933. CrossRef
- Gracilibacillus pellucidus sp. nov., a moderately halophilic bacterium isolated from saline soil in Xinjiang province, China
Research Support, Non-U.S. Gov'ts
- Species identity of Phellinus linteus (sanghuang) extensively used as a medicinal mushroom in Korea
- Jae-Gu Han , Min-Woo Hyun , Chang Sun Kim , Jong Won Jo , Jae-Han Cho , Kang-Hyo Lee , Won-Sik Kong , Sang-Kuk Han , Junsang Oh , Gi-Ho Sung
- J. Microbiol. 2016;54(4):290-295. Published online April 1, 2016
- DOI: https://doi.org/10.1007/s12275-016-5520-2
- 616 View
- 0 Download
- 28 Crossref
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Abstract
PDF
- Sanghuang is a medicinal mushroom that has gained particular attention in Korea. It has been extensively studied for the past few decades as a natural immune booster and cancer suppressor. Although the scientific name, Phellinus linteus, has been commonly used to refer to the sanghuang mushroom, the species identity of sanghuang has been called into question due to the ambiguity of its circumscription and the inadequacy of morphological distinctions within allied species. Because the species concept of sanghuang has been elucidated by recent molecular phylogenetic studies, it has become necessary to clarify the taxonomic positions of sanghuang strains extensively utilized in Korea. We conducted a phylogenetic analysis of 74 strains belonging to the P. linteus-baumii complex based on ITS nrDNA sequences. Parental stains of sanghuang varieties formally registered in the Korea Seed & Variety Service, including ASI 26046 (Corea sanghuang), 26114 (Boolro), and 26115 (HK 1-ho) were grouped with Sanghuangporus sanghuang instead of P. linteus in the inferred phylogeny.
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Citations
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Yoonhee Cho, Chang Wan Seo, Hyeonjae Cho, Yeongwoon Jin, Abel Severin Lupala, Sang Hee Shim, Young Woon Lim
BMC Genomics.2025;[Epub] CrossRef - Medicinal Mushrooms: Bioactive Components, Pharmacological, Immunological and Toxicological Insights
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ChemistrySelect.2025;[Epub] CrossRef -
The first complete mitochondrial genome of
Phellinus pomaceus
var.
prunastri
(Pers.) Pat. 1926 (Hymenochaetales: Hymenochaetaceae) and phylogenetic analysis
Wei Gao, Shuyi Chen, Qiang Li
Mitochondrial DNA Part B.2024; 9(12): 1674. CrossRef - Preparation, characterization and cytotoxic activity of selenium nanoparticles stabilized with a heteropolysaccharide isolated from Sanghuangporus vaninii residue
Wenqi Chu, Peng Liu, Zhong Zhang, Di Wu, Wen Li, Wanchao Chen, Zhengpeng Li, Weike Wang, Yan Yang
Carbohydrate Polymers.2024; 343: 122468. CrossRef - Comparative genomic analysis of Sanghuangporus sanghuang with other Hymenochaetaceae species
Xinyue Wang, Jiansheng Wei, Zhenwen Liu, Yi Wang, Xiaolong Yuan, Dong Wang, Junmei Niu, Yan Yang, Jing Zhou
Brazilian Journal of Microbiology.2024; 55(1): 87. CrossRef - Research Progress of Bioactive Components in Sanghuangporus spp.
Jungu Lu, Manman Su, Xuan Zhou, Deming Li, Xinhui Niu, Yi Wang
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In vitro
and
in vivo
inhibitory effects of the Sanghuang mushroom extracts against
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Jiahui Du, Shuqing Jin, Ying Zhang, Wei Qiu, Yahui Dong, Yan Liu, Dengke Yin, Ye Yang, Weifang Xu
Future Microbiology.2024; 19(11): 983. CrossRef - Sanghuangporus sanghuang extract extended the lifespan and healthspan of Caenorhabditis elegans via DAF-16/SIR-2.1
Zhenghan Dong, Yachao Wang, Cuiting Hao, Yuan Cheng, Xi Guo, Yanyu He, Yueyue Shi, Shuang Wang, Yunqi Li, Wei Shi
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Tingting Li, Qin Wang, Yan Yang, Dingka Song
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Li-Wei Zhou, Masoomeh Ghobad-Nejhad, Xue-Mei Tian, Yi-Fei Wang, Fang Wu
Food Reviews International.2022; 38(4): 589. CrossRef - Pilot Study: Nutritional and Preclinical Safety Investigation of Fermented Hispidin-Enriched Sanghuangporus sanghuang Mycelia: A Promising Functional Food Material to Improve Sleep
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Frontiers in Nutrition.2022;[Epub] CrossRef - Hispolon alleviates oxidative damage by stimulating the Nrf2 signaling pathway in PC12 cells
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Xiao-kui Ma, Hongyan Ma, Qi Chen, Yao Ma, Andrew J. Daugulis, Jian Liang, Peng Zheng
Biochemical Engineering Journal.2021; 166: 107876. CrossRef - Cloning and characterization of a phosphomevalonate kinase gene from Sanghuangporus baumii
Shixin Wang, Zengcai Liu, Xutong Wang, Tingting Sun, Li Zou
Biotechnology & Biotechnological Equipment.2021; 35(1): 934. CrossRef - Mushroom Inonotus sanghuang alleviates experimental pulmonary fibrosis: Implications for therapy of pulmonary fibrosis
Xing Su, Kun Liu, Yu Xie, Mengdi Zhang, Xiao Wu, Yijie Zhang, Junpeng Wang
Biomedicine & Pharmacotherapy.2021; 133: 110919. CrossRef - A rapid analysis of antioxidants in Sanghuangporus baumii by online extraction-HPLC-ABTS
Qian-Hui Shen, Qi Huang, Ju-Ying Xie, Kun Wang, Zheng-Ming Qian, De-Qiang Li
RSC Advances.2021; 11(41): 25646. CrossRef - Addressing widespread misidentifications of traditional medicinal mushrooms in Sanghuangporus (Basidiomycota) through ITS barcoding and designation of reference sequences
Shan Shen, Shi-Liang Liu, Ji-Hang Jiang, Li-Wei Zhou
IMA Fungus.2021;[Epub] CrossRef - Anti-inflammatory effect of hispidin on LPS induced macrophage inflammation through MAPK and JAK1/STAT3 signaling pathways
Ying-Hao Han, Dong-Qin Chen, Mei-Hua Jin, Ying-Hua Jin, Jing Li, Gui-Nan Shen, Wei-Long Li, Yi-Xi Gong, Ying-Ying Mao, Dan-Ping Xie, Dong-Seok Lee, Li-Yun Yu, Sun-Uk Kim, Ji-Su Kim, Taeho Kwon, Yu-Dong Cui, Hu-Nan Sun
Applied Biological Chemistry.2020;[Epub] CrossRef - Phellinus baumii enhances the immune response in cyclophosphamide-induced immunosuppressed mice
Jeong-Hyun Yoo, You-Suk Lee, SaeKwang Ku, Hae-Jeung Lee
Nutrition Research.2020; 75: 15. CrossRef - Optimized production and safety evaluation of hispidin‐enriched Sanghuangporus sanghuang mycelia
I‐Chen Li, Chang Cheng Chen, Sen‐Je Sheu, I‐Hsuan Huang, Chin‐Chu Chen
Food Science & Nutrition.2020; 8(4): 1864. CrossRef - Cyclofarnesane sesquiterpenoids from the fungus Sanghuangporus sp.
Oue-artorn Rajachan, Aphidech Sangdee, Kwanjai Kanokmedhakul, Sarawut Tontapha, Vittaya Amornkitbamrung, Somdej Kanokmedhakul
Phytochemistry Letters.2020; 37: 17. CrossRef - Purification and characterization of a novel antioxidant Phelligridin LA produced by Inonotus baumii
Tianwen Wang, Hui Li, Chen Liang, Shiwei Sun, Ao Liu, Hu Zhu
Journal of Chemical Technology & Biotechnology.2020; 95(9): 2483. CrossRef - Systematics is crucial for the traditional Chinese medicinal studies and industry of macrofungi
Li-Wei Zhou
Fungal Biology Reviews.2020; 34(1): 10. CrossRef - Inonotus sanghuang Polyphenols Attenuate Inflammatory Response Via Modulating the Crosstalk Between Macrophages and Adipocytes
Mengdi Zhang, Yu Xie, Xing Su, Kun Liu, Yijie Zhang, Wuyan Pang, Junpeng Wang
Frontiers in Immunology.2019;[Epub] CrossRef - Species Diversity, Phylogeny, Divergence Time, and Biogeography of the Genus Sanghuangporus (Basidiomycota)
Lin Zhu, Jie Song, Jun-Liang Zhou, Jing Si, Bao-Kai Cui
Frontiers in Microbiology.2019;[Epub] CrossRef - Protective effect of a polyphenols-rich extract from Inonotus Sanghuang on bleomycin-induced acute lung injury in mice
Xing Su, Kun Liu, Yu Xie, Mengdi Zhang, Yong Wang, Min Zhao, Yilin Guo, Yijie Zhang, Junpeng Wang
Life Sciences.2019; 230: 208. CrossRef - The Antitumor Potential of Extract of the Oak Bracket Medicinal Mushroom Inonotus baumii in SMMC-7721 Tumor Cells
Yue Yang, Pingya He, Ning Li
Evidence-Based Complementary and Alternative Medicine.2019; 2019: 1. CrossRef - Evaluation of antioxidant, anti-inflammatory and anti-proliferative activities of ethanol extracts from different varieties of Sanghuang species
Wang-Ching Lin, Jeng-Shyan Deng, Shyh-Shyun Huang, Sheng-Hua Wu, Hui-Yi Lin, Guan-Jhong Huang
RSC Advances.2017; 7(13): 7780. CrossRef
- A conserved terpene cyclase gene in Sanghuangporus for abscisic acid-related sesquiterpenoid biosynthesis
- Note] Oceanobacillus gochujangensis sp. nov., Isolated from gochujang a Traditional Korean Fermented Food
- Seo-Jung Jang , Yu-Jin Kim , Sul-Hee Lee , Young-Seo Park , Jung-Min Park , Dong-Hoon Bai
- J. Microbiol. 2014;52(12):1050-1055. Published online July 30, 2014
- DOI: https://doi.org/10.1007/s12275-014-4220-z
- 398 View
- 0 Download
- 4 Crossref
-
Abstract
PDF
-
A Gram-stain-positive, polar flagella-containing, rod-shaped,
obligate aerobic, endospore-forming bacterium, strain
TK1655T, was isolated from the traditional Korean food
gochujang. The 16S rRNA sequence of strain TK1655T was
a member of the genus Oceanobacillus similar to that of the
type strain of Oceanobacillus oncorhynchi subsp. incaldanensis
DSM 16557T (97.2%), O. oncorhynchi subsp. oncorhynchi JCM
12661T (97.1%), O. locisalsi KCTC 13253T (97.0%), and O.
sojae JCM 15792T (96.9%). Strain TK1655T was oxidase and
catalase positive. Colonies were circular, smooth, low convex,
cream in colour, and measured about 0.5–1.0 mm in diameter.
The range for growth was 20–40°C (optimal, 30°C), pH 6.0–
10.0 (optimal, 7.0), and 2–16% (w/v) NaCl (optimal, 2%).
Additionally, the cells contained meso-DAP, and the predominant
isoprenoid quinone was MK-7. The complex polar
lipids were consisted of diphosphatidylglycerol (DPG), phosphatidylglycerol
(PG), phosphatidylcholine (PC). The major
cellular fatty acid components were iso-C15:0, anteiso-C15:0,
iso-C16:0, and anteiso-C17:0, and the DNA G+C content was
40.5%. DNA-DNA relatedness of our novel strain and reference
strain O. locisalsi KCTC 13253T, O. oncorhynchi subsp.
incaldanensis DSM 16557T, O. oncorhynchi subsp. oncorhynchi
JCM 12661T was 45.7, 43.8, and 41.9%. From the
results
of phenotypic, chemotaxonomic, and phylogenetic analyses of strain TK1655T, we propose the novel species Oceanobacillus gochujangensis sp. nov. The type strain is TK1655T (=KCCM 101304T =KCTC 33014T =CIP 110582T =NBRC 109637T). -
Citations
Citations to this article as recorded by- Microbiota dynamics and volatile compounds in lupine based Moromi fermented at different salt concentrations
Rebekka H. Lülf, Rudi F. Vogel, Matthias A. Ehrmann
International Journal of Food Microbiology.2021; 354: 109316. CrossRef - Cell envelop is the key site for Cr(Ⅵ) reduction by Oceanobacillus oncorhynchi W4, a newly isolated Cr(Ⅵ) reducing bacterium
Qiang Zeng, Yuting Hu, Yiran Yang, Liang Hu, Hui Zhong, Zhiguo He
Journal of Hazardous Materials.2019; 368: 149. CrossRef - Microbial communities and their predicted metabolic functions in a desiccating acid salt lake
Elena Zaikova, Kathleen C. Benison, Melanie R. Mormile, Sarah Stewart Johnson
Extremophiles.2018; 22(3): 367. CrossRef - Oceanobacillus bengalensis sp. nov., a bacterium isolated from seawater of the Bay of Bengal
Ouyang Yongchang, Wenzhou Xiang, Guanghua Wang
Antonie van Leeuwenhoek.2015; 108(5): 1189. CrossRef
- Microbiota dynamics and volatile compounds in lupine based Moromi fermented at different salt concentrations
- Full Sequence Analysis and Characterization of a Human Astrovirus Type 1 Isolate from South Korea
- Sung-Geun Lee , Lae-Hyung Kang , Weon-Hwa Jheong , Mi-Hwa Oh , Gyu-Cheol Lee , Sujeong Park , Soon-Young Paik
- J. Microbiol. 2013;51(1):123-129. Published online March 2, 2013
- DOI: https://doi.org/10.1007/s12275-013-2505-2
- 319 View
- 0 Download
- 2 Crossref
-
Abstract
PDF
- Human astroviruses are recognized as an important cause of infantile gastroenteritis around the world. In South Korea, sporadic cases of HAstV infection have been reported since 2002. However, hitherto, there have been no studies reporting the whole genome sequence of an HAstV isolate from South Korea. Hence, we sequenced and analyzed the entire genome of an HAstV-1 strain (lhar) that was isolated in Seoul, South Korea. The whole-genome sequence analysis revealed 3 open reading frames comprising the whole genome: ORF1a (2,763 bp), ORF1b (1,548 bp), and ORF2 (2,364 bp). The lhar strain showed amino acid identities with 8 other reference strains of 87.6–98.7%, 94.2–98.8%, and 62.6–99.0% in the ORF1a, ORF1b, and ORF2 regions, respectively. The amino acid sequence of the capsid region encoded by ORF2 was compared with a total of 19 HAstV-1 strains and 8 HAstVs reference strains isolated in various countries. This revealed 1 amino acid substitution, at aa412 (Pro → Arg) in ORF2. This study, the first to report the fulllength sequence of an HAstV isolated in South Korea, is meaningful in that it can be used as a full-length HAstV sequence standard for future comparison studies. It may also prove useful to the field of public health field by facilitating the diagnosis and the prediction of new emerging variants.
-
Citations
Citations to this article as recorded by- Full Sequence Analysis and Characterization of Human Bocavirus Type 2 in South Korea
Bomina Paik, Sung-Geun Lee , Han-Gil Cho, Yu-Jung Won, Lae-Hyung Kang, Soon-Young Paik, Seung-Jin Hong
Jundishapur Journal of Microbiology.2019;[Epub] CrossRef - Complete genome sequencing of a recombinant strain between human astrovirus antigen types 2 and 8 isolated from South Korea
Hyun-Ju Ha, Sung-Geun Lee, Han-Gil Cho, Ji-Young Jin, Jae Woong Lee, Soon-Yong Paik
Infection, Genetics and Evolution.2016; 39: 127. CrossRef
- Full Sequence Analysis and Characterization of Human Bocavirus Type 2 in South Korea
- Characterization, Metabolites and Gas Formation of Fumarate Reducing Bacteria Isolated from Korean Native Goat (Capra hircus coreanae)
- Lovelia L. Mamuad , Seon Ho Kim , Sung Sil Lee , Kwang Keun Cho , Che Ok Jeon , Sang-Suk Lee
- J. Microbiol. 2012;50(6):925-931. Published online December 30, 2012
- DOI: https://doi.org/10.1007/s12275-012-2497-3
- 278 View
- 0 Download
- 12 Crossref
-
Abstract
PDF
- Fumarate reducing bacteria, able to convert fumarate to succinate, are possible to use for the methane reduction in rumen because they can compete for H2 with methanogens. In this, we isolated fumarate reducing bacteria from a rumen of Korean native goat and characterized their molecular properties [fumarate reductase A gene (frdA)], fumarate reductase activities, and productions of volatile fatty acids and gas. Eight fumarate reducing bacteria belonging to Firmicutes were isolated from rumen fluid samples of slaughtered Korean black goats and characterized their phylogenetic positions based on 16S rRNA gene sequences. PCR based analyses showed that only one strain, closely related to Mitsuokella jalaludinii, harbored frdA. The growths of M. jalaludinii and Veillonella parvula strains were tested for different media. Interestingly, M. jalaludinii grew very well in the presence of hydrogen alone, while V. parvula grew well in response of fumarate and fumarate plus hydrogen. M. jalaludinii produced higher levels of lactate (P≤0.05) than did V. parvula. Additionally, M. jalaludinii produced acetate, but not butyrate, whereas V. parvula produced butyrate, not acetate. The fumarate reductase activities of M. jalaludinii and V. parvula were 16.8 ± 0.34 and 16.9 ± 1.21 mmol NADH oxidized/min/mg of cellular N, respectively. In conclusion, this showed that M. jalaludinii can be used as an efficient methane reducing agent in rumen.
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Citations
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Jing Ma, Pei Zhong, Yuqi Li, Zhanying Sun, Xiaoni Sun, Min Aung, Lizhuang Hao, Yanfen Cheng, Weiyun Zhu
Journal of Fungi.2022; 8(4): 338. CrossRef - Dietary wheat and reduced methane yield are linked to rumen microbiome changes in dairy cows
Keith W. Savin, Peter J. Moate, S. R. O. Williams, Carolyn Bath, Joanne Hemsworth, Jianghui Wang, Doris Ram, Jody Zawadzki, Simone Rochfort, Benjamin G. Cocks, James E. Wells
PLOS ONE.2022; 17(5): e0268157. CrossRef - Reducing Enteric Methanogenesis through Alternate Hydrogen Sinks in the Rumen
Prasanta Kumar Choudhury, Rajashree Jena, Sudhir Kumar Tomar, Anil Kumar Puniya
Methane.2022; 1(4): 320. CrossRef - Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model
Limei Lin, Fei Xie, Daming Sun, Junhua Liu, Weiyun Zhu, Shengyong Mao
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Lovelia L. Mamuad, Sung Sill Lee, Sang Suk Lee
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Lovelia Mamuad, Seon Ho Kim, Chang Dae Jeong, Yeon Jae Choi, Che Ok Jeon, Sang-Suk Lee
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Sílvia Cristina de Aguiar, Lucia Maria Zeoula, Odimari Pricila Pires do Prado, Pedro Braga Arcuri, Evelyne Forano
World Journal of Microbiology and Biotechnology.2014; 30(11): 2917. CrossRef
- High-solid anaerobic acidification of cassava pulp in leach-bed reactors-inoculated with Clostridium butyricum-rich microbial consortiums and its prospective for biogas
- NOTE] Molecular Characterization of Two Strains of Porcine Group C Rotavirus
- Sung-Geun Lee , Soo-Hyun Youn , Mi-Hwa Oh , Ok-Jae Rhee , Sangsuk Oh , Soon-Young Paik
- J. Microbiol. 2011;49(6):1058-1062. Published online December 28, 2011
- DOI: https://doi.org/10.1007/s12275-011-1088-z
- 175 View
- 0 Download
- 7 Scopus
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Abstract
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- Group C rotaviruses are an important cause of acute gastroenteritis in humans and animals. Fecal samples were collected from a porcine herd in July, 2009. Group C rotavirus RNA was detected using RT-PCR for the VP6 gene. The identified strain was further characterized by sequencing and phylogenetic analysis of the partial VP4, and complete VP6 and VP7 gene sequences. The partial VP4 and complete VP6 gene sequences of the CUK-5 strain were most closely related to those of the CUK-6 strain of group C rotaviruses. Phylogenetic analysis of the VP7 gene of the 2 strains (CUK-5 and CUK-6) and reference strains of group G rotavirus by the neighbor-joining method also confirmed that CUK-5 and CUK-6 belonged to type G5 and G1 strains, respectively. This study provides useful data for the prediction of newly appearing variants of porcine group C rotaviruses in neighboring countries through comparisons with GCRVs and fundamental research for vaccine development.
- Antimicrobial Effect of Korean Propolis Against the Mutans Streptococci Isolated from Korean
- Min Jung Kim , Chun Sung Kim , Byung-Hoon Kim , Sang-Bok Ro , Yun Kyong Lim , Soon-Nang Park , Engene Cho , Jang-Hyuk Ko , Soon-Sung Kwon , Yeong-Mu Ko , Joong-Ki Kook
- J. Microbiol. 2011;49(1):161-164. Published online March 3, 2011
- DOI: https://doi.org/10.1007/s12275-011-1002-8
- 297 View
- 0 Download
- 22 Crossref
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Abstract
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- The aim of this study was to determine the optimal concentration of Korean propolis against clinical isolates of mutans streptococci (MS) from Koreans. The antimicrobial activity was evaluated using the minimum inhibitory concentration (MIC) and time-kill curves against mutans streptococci. The MIC90 values of propolis for MS were 35 μg/ml. Propolis had a bacteriostatic effect on Streptococcus mutans ATCC 25175T and bactericidal effects on Streptococcus sobrinus ATCC 33478T at > 2×MIC (70 μg/ml). These results suggest that the propolis can be used in the development of oral hygiene products for the prevention of dental caries.
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Citations
Citations to this article as recorded by- Chemical composition, antimicrobial activities, and molecular docking studies of Turkish propolis ethanol extract
Gokben Ozbey, Mustafa Necati Muz, Elif Seren Tanriverdi, Sultan Erkan, Niyazi Bulut, Baris Otlu, František Zigo
Czech Journal of Food Sciences.2023; 41(2): 144. CrossRef - Use of Plant Extracts, Bee-Derived Products, and Probiotic-Related Applications to Fight Multidrug-Resistant Pathogens in the Post-Antibiotic Era
António Machado, Lizbeth Zamora-Mendoza, Frank Alexis, José Miguel Álvarez-Suarez
Future Pharmacology.2023; 3(3): 535. CrossRef - Propolis as Natural Product in the Oral Cavity Bacterial Infections Treatment: A Systematic Review
Michał Otręba, Łukasz Marek, Natalia Tyczyńska, Jerzy Stojko, Anna Kurek-Górecka, Michał Górecki, Paweł Olczyk, Anna Rzepecka-Stojko
Applied Sciences.2022; 12(19): 10123. CrossRef - Towards Advances in Medicinal Plant Antimicrobial Activity: A Review Study on Challenges and Future Perspectives
Natalia Vaou, Elisavet Stavropoulou, Chrysa Voidarou, Christina Tsigalou, Eugenia Bezirtzoglou
Microorganisms.2021; 9(10): 2041. CrossRef - Antimicrobial activity of a novel Spanish propolis against planktonic and sessile oral Streptococcus spp
M. Luisa Navarro-Pérez, Virginia Vadillo-Rodríguez, Irene Fernández-Babiano, Ciro Pérez-Giraldo, M. Coronada Fernández-Calderón
Scientific Reports.2021;[Epub] CrossRef - Antifungal and Antibacterial Effect of Propolis: A Comparative Hit for Food-Borne Pseudomonas, Enterobacteriaceae and Fungi
Leonardo Petruzzi, Maria Rosaria Corbo, Daniela Campaniello, Barbara Speranza, Milena Sinigaglia, Antonio Bevilacqua
Foods.2020; 9(5): 559. CrossRef - The beneficial effect of Indonesian propolis wax from Tetragonula sp. as a therapy in limited vaginal candidiasis patients
Siti Farida, Muhamad Sahlan, Etin Rohmatin, Robiatul Adawiyah
Saudi Journal of Biological Sciences.2020; 27(1): 142. CrossRef - Effectiveness of chitosan-propolis nanoparticle against Enterococcus faecalis biofilms in the root canal
Abhishek Parolia, Haresh Kumar, Srinivasan Ramamurthy, Fabian Davamani, Allan Pau
BMC Oral Health.2020;[Epub] CrossRef - Antibacterial Properties of Propolis
Izabela Przybyłek, Tomasz M. Karpiński
Molecules.2019; 24(11): 2047. CrossRef - Antimicrobial Effect of Polyphenon 60 against Streptococcus mutans and Streptococcus sobrinus
Tae-Young Park, Yun Kyong Lim, Joong-Ki Kook
International Journal of Oral Biology.2018; 43(3): 123. CrossRef - Effect of Brazilian green propolis on oral pathogens and human periodontal fibroblasts
Hirotake Oda, Taneaki Nakagawa, Kosuke Maruyama, Yuzuru Dono, Hiroaki Katsuragi, Soh Sato
Journal of Oral Biosciences.2016; 58(2): 50. CrossRef - Effects of fluoride and Aloe vera tooh gel in artificial white spot lesions in vitro
Tânia Mara da SILVA, Beatriz Maria da FONSECA, Ana Luísa Leme Simões SALES, Priscila HOLLEBEN, Márcia Carneiro VALERA, Maria Amélia Máximo de ARAÚJO
RGO - Revista Gaúcha de Odontologia.2016; 64(1): 56. CrossRef - The in Vitro Antimicrobial Efficacy of Propolis against Four Oral Pathogens: A Review
Nadine Waldner-Tomic, Rosmarie Vanni, Georgios Belibasakis, Thomas Thurnheer, Thomas Attin, Patrick Schmidlin
Dentistry Journal.2014; 2(3): 85. CrossRef - Determination of optimal concentration of deglycyrrhizinated licorice root extract for preventing dental caries using a bacterial model system
Sug-Joon Ahn, Young-Doo Song, Su-Jung Mah, Eun-Jung Cho, Joong-Ki Kook
Journal of Dental Sciences.2014; 9(3): 214. CrossRef - Antimicrobial Effect of Honey on Streptococcus Mutans of Dental Plaque
NR Yadav, BK Garla, VK Reddy, S Tandon, S Prasad
Journal of Oral Health and Community Dentistry.2014; 8(2): 72. CrossRef - Antioxidant action of propolis on mouse lungs exposed to short-term cigarette smoke
Alan Aguiar Lopes, Thiago Santos Ferreira, Renata Tiscoski Nesi, Manuella Lanzetti, Karla Maria Pereira Pires, Ari Miranda Silva, Ricardo Moreira Borges, Antonio Jorge Ribeiro Silva, Samuel Santos Valença, Luís Cristóvão Porto
Bioorganic & Medicinal Chemistry.2013; 21(24): 7570. CrossRef - Antibacterial substances from Albizia myriophylla wood against cariogenic Streptococcus mutans
Nantiya Joycharat, Sonesay Thammavong, Surasak Limsuwan, Sirilux Homlaead, Supayang Piyawan Voravuthikunchai, Boon-ek Yingyongnarongkul, Sukanya Dej-adisai, Sanan Subhadhirasakul
Archives of Pharmacal Research.2013; 36(6): 723. CrossRef - Recent Progress of Propolis for Its Biological and Chemical Compositions and Its Botanical Origin
Viviane Cristina Toreti, Helia Harumi Sato, Glaucia Maria Pastore, Yong Kun Park
Evidence-Based Complementary and Alternative Medicine.2013; 2013: 1. CrossRef - The Antibacterial Effect of Ethanol Extract of Polish Propolis on Mutans Streptococci and Lactobacilli Isolated from Saliva
Arkadiusz Dziedzic, Robert Kubina, Robert D. Wojtyczka, Agata Kabała-Dzik, Marta Tanasiewicz, Tadeusz Morawiec
Evidence-Based Complementary and Alternative Medicine.2013; 2013: 1. CrossRef - Antimicrobial Effect of Carvacrol against Cariogenic and Periodontopathic Bacteria
Soon-Nang Park, Dong-Kyun Lee, Yun-Kyong Lim, Hwa-Sook Kim, Eu-Gene Cho, Dongchun Jin, Saeng-Gon Kim, Joong-Ki Kook
The Korean Journal of Microbiology.2012; 48(1): 52. CrossRef - Plant-Derived Antimicrobial Compounds: Alternatives to Antibiotics
Dianella Savoia
Future Microbiology.2012; 7(8): 979. CrossRef - Antimicrobial effect of linalool and α-terpineol against periodontopathic and cariogenic bacteria
Soon-Nang Park, Yun Kyong Lim, Marcelo Oliveira Freire, Eugene Cho, Dongchun Jin, Joong-Ki Kook
Anaerobe.2012; 18(3): 369. CrossRef
- Chemical composition, antimicrobial activities, and molecular docking studies of Turkish propolis ethanol extract
- Timing and Evolution of the Most Recent Common Ancestor of the Korean Clade HIV Subtype B Based on Nef and Vif Sequences
- Mi-Suk Kim , So-Young Jang , Chan-Seung Park , Keon-Myung Lee , Dong-Hun Lee , Chan-Hee Lee
- J. Microbiol. 2009;47(1):85-90. Published online February 20, 2009
- DOI: https://doi.org/10.1007/s12275-008-0240-x
- 322 View
- 0 Download
- 5 Crossref
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Abstract
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- Molecular phylogenetic studies of the HIV-1 isolated from Koreans have suggested the presence of the so- called “Korean clade”, which can be defined as a cluster free of foreign isolates. The Korean clade accounts for more than 60% of Korean isolates and exerts characteristic amino acid sequences. Thus, it is merited to estimate when this Korean clade first emerged in order to understand the evolutionary pattern of the Korean clade. We analyzed and reconstructed the most recent common ancestor (MRCA) sequences from nef (n=229) and vif (n=179) Korean clade sequences. Linear regression analyses of sequence divergence estimates were plotted against sampling years to infer the year in which there was zero divergence from the MRCA sequences. MRCA sequences suggested the Korean clade was first emerged around 1984, before the first detection of HIV-1 in Korea in 1985. Further studies on synonymous and nonsynonymous substitution rates suggested positive selection event for the Korean clade, while other subtype B had undergone negative to neutral evolution.
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Citations
Citations to this article as recorded by- Sequence Length of HIV-1 Subtype B Increases over Time: Analysis of a Cohort of Patients with Hemophilia over 30 Years
Young-Keol Cho, Jung-Eun Kim, Brian T. Foley
Viruses.2021; 13(5): 806. CrossRef - Genetic Analysis of the Full-Length gag Gene from the Earliest Korean Subclade B of HIV-1: An Outbreak among Korean Hemophiliacs
Young-Keol Cho, Jung-Eun Kim, Brian T. Foley
Viruses.2019; 11(6): 545. CrossRef - Phylogenetic and Temporal Dynamics of Human Immunodeficiency Virus Type 1B in China: Four Types of B Strains Circulate in China
Jingrong Ye, Hongyan Lu, Xueli Su, Ruolei Xin, Lishi Bai, Ke Xu, Shuangqing Yu, Xia Feng, Hong Yan, Xiong He, Yi Zeng
AIDS Research and Human Retroviruses.2014; 30(9): 920. CrossRef - The origin and diversity of the HIV-1 pandemic
Joris Hemelaar
Trends in Molecular Medicine.2012; 18(3): 182. CrossRef - Full Genome Analysis of an Emerging Cluster of Human Immunodeficiency Virus Type 1 Subtype B Infection in Hong Kong
Stephen K.W. Tsui, Nga-Yin Fong, Sai-Kam Li, Ka-Kit Leung, Denise P.C. Chan, Paul K.S. Chan, Ka-Hing Wong, Shui-Shan Lee
AIDS Research and Human Retroviruses.2010; 26(1): 117. CrossRef
- Sequence Length of HIV-1 Subtype B Increases over Time: Analysis of a Cohort of Patients with Hemophilia over 30 Years
- Generation of Infectious Transcripts from Korean Strain and Mild Mottle Strain of Potato Virus X
- Sun Hee Choi , Ki Hyun Ryu
- J. Microbiol. 2008;46(5):502-507. Published online October 31, 2008
- DOI: https://doi.org/10.1007/s12275-008-0078-2
- 298 View
- 0 Download
- 2 Crossref
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Abstract
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- Full-length cDNAs of two different strains of Potato virus X (PVX-Kr and PVX-Mo) have been directly amplified by long template reverse transcription polymerase chain reaction (RT-PCR) using the 5’-end primer containing a SP6 or T7 RNA promoter sequence and the virus-specific 3’-end primer, and then constructed in plasmid vectors. Capped in vitro transcripts from cloned full-length cDNAs as well as those RTPCR amplicons proved to be infectious systemically on tobacco plants. Symptom expression on tobacco plants from PVX-Mo transcripts was faster and severer than that from PVX-Kr. In replication stability test of transcripts derived from PVX clones, progeny viruses showed stable replication according to sequencing through passages. This highly infectious transcript system from the full-length cDNA clones for PVX can be useful for recombinant molecules for functional analysis of viral proteins in plant-virus interaction study as well as for expression of foreign protein in planta.
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Citations
Citations to this article as recorded by- Validation of reference genes for quantifying changes in gene expression in virus-infected tobacco
Eseul Baek, Ju-Yeon Yoon, Peter Palukaitis
Virology.2017; 510: 29. CrossRef - Strategies to facilitate the development of uncloned or cloned infectious full-length viral cDNAs: Apple chlorotic leaf spot virus as a case study
Fater Youssef, Armelle Marais, Chantal Faure, Pascal Gentit, Thierry Candresse
Virology Journal.2011;[Epub] CrossRef
- Validation of reference genes for quantifying changes in gene expression in virus-infected tobacco
Journal Article
- Prevalence of Antibodies in Response to Legionella Species, Analysis of a Healthy Population from Jeollanam-do Province, Korea
- Hae Kyung Lee , Mi Kyeong Woo , Yong In Ju , Soo Jin Baek , Hyeon Je Song , Jin Su Choi , Sun Seog Kweon , Doo Young Jeon , Yeon Ho Kang
- J. Microbiol. 2008;46(2):160-164. Published online June 11, 2008
- DOI: https://doi.org/10.1007/s12275-007-0181-9
- 292 View
- 0 Download
- 8 Crossref
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Abstract
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- Seroepidemological investigation of antibodies to Legionella species in 500 healthy individuals from a single geographical location in Korea was conducted by indirect fluorescent antibody assay (IFA). Considering an antibody titer of ≥1:128 as positive reaction, 15.2% of total sera were positive. In males and females older than 40 years old, levels of IgM and IgG were 1.2% and 14%, respectively. The sera with antibody titers of ≥1:128 to Legionella species accounted for 85 sera, and 9 sera of these were reacted to more than one Legionella species. Reactivity to L. bozemanii, L. micdadei, L. longbeachae, L. pneumophila sg 6, and L. gormanii were 32.9%, 20%, 15%, 10.6%, and 8%, respectively. However, L. pneumophila sg 1, sg 2, and sg 3 did not react to any sera. Serological analysis revealed that the level of antibody in response to L. bozemanii was more prevalent than L. pneumophila. Our results suggest that the antibodies of non-L. pneumophila species, such as L. bozemanii, may be highly prevalent in healthy population within Korea. Although conclusions based on the findings of this study must be cautiously considered given that the population sampled were sourced from a single province, we have added to the knowledge base of serodiagnosis of infections due to non-L. pneumophila species in Korea.
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Citations
Citations to this article as recorded by- Legionnaires’ Disease Surveillance and Public Health Policies in Italy: A Mathematical Model for Assessing Prevention Strategies
Vincenzo Romano Spica, Paola Borella, Agnese Bruno, Cristian Carboni, Martin Exner, Philippe Hartemann, Gianluca Gianfranceschi, Pasqualina Laganà, Antonella Mansi, Maria Teresa Montagna, Osvalda De Giglio, Serena Platania, Caterina Rizzo, Alberto Spotti,
Water.2024; 16(15): 2167. CrossRef - Legionellosis Caused by Non-Legionella pneumophila Species, with a Focus on Legionella longbeachae
Stephen T. Chambers, Sandy Slow, Amy Scott-Thomas, David R. Murdoch
Microorganisms.2021; 9(2): 291. CrossRef - Review Global seroprevalence of legionellosis - a systematic review and meta-analysis
Frances F. Graham, Simon Hales, Paul S. White, Michael G. Baker
Scientific Reports.2020;[Epub] CrossRef - Legionella and legionellosis in touristic-recreational facilities: Influence of climate factors and geostatistical analysis in Southern Italy (2001–2017)
Osvalda De Giglio, Fabrizio Fasano, Giusy Diella, Marco Lopuzzo, Christian Napoli, Francesca Apollonio, Silvia Brigida, Carla Calia, Carmen Campanale, Angelo Marzella, Chrysovalentinos Pousis, Serafina Rutigliano, Francesco Triggiano, Giuseppina Caggiano,
Environmental Research.2019; 178: 108721. CrossRef - Evaluation of the prevalence of Legionella pneumophila in Iranian clinical samples: A systematic review and meta-analysis
Azad Khaledi, Seyed-Alireza Esmaeili, Hossein Vazini, Pezhman Karami, Afsane Bahrami, Amirhossein Sahebkar
Microbial Pathogenesis.2019; 129: 93. CrossRef - Current and Emerging Legionella Diagnostics for Laboratory and Outbreak Investigations
Jeffrey W. Mercante, Jonas M. Winchell
Clinical Microbiology Reviews.2015; 28(1): 95. CrossRef - Quantitative Microbial Risk Assessment on Legionella Infection in Children Playing in Interactive Fountains
In-Sup Lee, Young-Gun Zo
The Korean Journal of Microbiology.2013; 49(4): 360. CrossRef - An Epidemiological Survey on Serological Diagnosis ofLegionnellaInfection in Seoul, Korea
Yong-Tae Yoon, Chang-Ho Han, Sung-Sun Choi, Jung-Mi Lee, Chang-Kyu Kim, Sung-Min Choi
Journal of Bacteriology and Virology.2013; 43(2): 140. CrossRef
- Legionnaires’ Disease Surveillance and Public Health Policies in Italy: A Mathematical Model for Assessing Prevention Strategies
Research Support, Non-U.S. Gov'ts
- Analysis of Substitution Events in HIV-1 vif Gene of the Korean Clade
- Chan Seung Park , Mi Sook Kim , Hyun Ah Yi , Dong Hun Lee , Keon Myung Lee , Chan Hee Lee
- J. Microbiol. 2007;45(1):75-78.
- DOI: https://doi.org/2487 [pii]
- 208 View
- 0 Download
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Abstract
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- Nucleotide and amino acid substitution pattern in vif gene of the Korean clade of HIV-1 isolated from Koreans were analyzed using consensus sequences. At nucleotide level, transition/transversion substitution ratio was 1.88, and nonsynonymous/synonymous substitution ratio was 2.67, suggesting a divergent <br>evolution in the Korean clade. At amino acid level, there were 17 substitutions and G→E substitution at position 37 may be responsible for change in predicted secondary structure.
- Molecular Phylogenetic Analysis of HIV-1 vif Gene from Korean Isolates
- Chan Seung Park , Mi Sook Kim , Sung Duk Lee , Sung Soo Kim , Keon Myung Lee , Chan-Hee Lee
- J. Microbiol. 2006;44(6):655-659.
- DOI: https://doi.org/2461 [pii]
- 245 View
- 0 Download
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Abstract
PDF
- Phylogenetic studies of nef, pol, and env gene sequences of HIV-1 isolated from Koreans suggested the presence of a Korean clade in which Korean sequences are clustered to the exclusion of foreign sequences. We attempted to identify and characterize the Korean clade using all vif gene sequences isolated from Koreans registered in the NCBI GenBank database (n = 233). Most (77%) of the Korean isolates belonged to the Korean clade as a large subcluster in subtype B, designated the Korean clade subtype B (KCB). KCB sequences were relatively homogenous compared to Korean subtype B sequences that did not belong to the KCB (non-Korean clade subtype B; NKCB). Comparison of amino acid frequencies of KCB and NKCB sequences revealed several positions where the amino acid frequencies were significantly different. These amino acid residues were critical in separating KCB from NKCB or from foreign sequences, since substitution of these amino acids in KCB with the NKCB amino acids relocated the KCB sequences to NKCB, and vice versa. Further analyses of KCB will help us to understand the origin and evolutionary history of KCB.
- Comparative Analysis of Cyanobacterial Communities from Polluted Reservoirs in Korea
- Jin-Book Kim , Mi-Sook Moon , Dong-Hun Lee , Sung-Taik Lee , Marco Bazzicalupo , Chi-Kyung Kim
- J. Microbiol. 2004;42(3):181-187.
- DOI: https://doi.org/2092 [pii]
- 209 View
- 0 Download
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Abstract
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- Cyanobacteria are the dominant phototrophic bacteria in water environments. Here, the diversity of cyanobacteria in seven Korean reservoir waters where different levels of algal blooms were observed during the summer of 2002, was examined by T-RFLP analysis. The number of T-RF bands in the HaeIII T-RFLP profiles analyzed from those water samples ranged from 20 to 44. Of these, cyanobacteria accounted for 6.1 to 27.2% of the total bacteria. The water samples could be clustered into 2 groups according to the Dice coefficient of the T-RF profiles. The eutrophic Dunpo and oligotrophic Chungju reservoirs were selected, and several representative clones from both reservoir waters analyzed for the nucleotide sequences of their 16S rDNA. The major clones were found to belong to the Microcystis and Anabaena species in the waters from the Dunpo and Chungju reservoirs, respectively, which was in agreement with the T-RFLP result. That is, the Microcystis and Anabaena species were dominant in the eutrophic and polluted Dunpo and oligotrophic Chungju reservoir waters, respectively. These results indicated that there is a correlation between prevalence of cyanobacterial species and levels of pollution in reservoir waters.
- Diversity of Yeasts Associated with Natural Environments in Korea
- Soon Gyu Hong , Kang Hyun Lee , Kyung Sook Bae
- J. Microbiol. 2002;40(1):55-62.
- 298 View
- 1 Download
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Abstract
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- Biodiversity of yeasts in various natural environments including soils, swamps and plants was investigated. By molecular identification methods based on the partial sequences of 26S rDNA, 69 isolates were assigned to 44 taxa including 27 known species. The remaining 17 taxa could potentially form new species. All of them were classified into Ascomycota, Hymenomycetes, Urediniomycetes and Ustilaginomycetes. Ascomycetous and ustilaginomycetous yeasts were generally isolated from flower samples, and hymenomycetous and urediniomycetous yeasts were generally isolated from soil samples. Distribution of yeast groups exhibited geographical variation. Yeast biodiversity of root soil also varied according to the associated plant species.
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