Journal of Microbiology

Resource

SimpleMicrobiome: An integrated web-based platform for streamlined microbiome data analysis and visualization: Seong-In Na, Juhee Kim, So-Yeon Kim, Jin Park, Yong-Joon Cho; Received June 11, 2026 Accepted August 4, 2026 Published online September 18, 2026; DOI: https://doi.org/10.71150/jm.2606011 [Epub ahead of print]

47 View
6 Download

Abstract PDF Supplementary Material: Microbiome studies require multiple analytical steps after initial sequence processing. These steps commonly include data harmonization, preprocessing, taxonomic profiling, diversity analysis, differential abundance testing, predictive modeling, network inference, and preparation of publication-ready outputs. Although robust packages are available for many of these tasks, routine use often depends on command-line workflows, repeated data reformatting, and method-specific scripting. These requirements can limit accessibility for experimental researchers and complicate consistent analysis across interdisciplinary teams. We developed SimpleMicrobiome, a web-based R Shiny platform that integrates established microbiome analysis methods into a single interactive downstream workflow. The application accepts standard abundance, taxonomy, and metadata tables, supports interactive preprocessing and sample filtering, and provides modules for taxa profile visualization, alpha and beta diversity analysis, ANCOM-BC2 and MaAsLin2 differential abundance testing, Random Forest modeling with SHAP-based interpretation, microbial association network inference using SparCC and SPIEC-EASI through NetCoMi, correlation heatmaps, and dbRDA/CAP-style association biplots. The platform is implemented as a modular Shiny application so that preprocessing choices are propagated across downstream analyses, results can be exported as figures and tables, and the same application can be run through the public server, source-code installation, or a Docker image.
SimpleMicrobiome consolidates major downstream microbiome analysis tasks in an accessible browser-based environment while retaining links to established analytical frameworks. The platform may reduce technical barriers for non-programming users, improve consistency across exploratory and reporting-oriented analyses, and support collaborative microbiome research. The public application is available at https://simplemicrobiome.mglab.org, the source code is available at https://github.com/yjcho2252/SimpleMicrobiome, and a Docker image for local deployment is available at https://hub.docker.com/r/mglab2252/simplemicrobiome.

Article

Development of an RT-LAMP−CRISPR/Cas12a assay for rapid and specific detection of Bandavirus dabieense: Bo Seung Song, Yun Hee Baek, Eun-Ha Kim, Hyeok-Il Kwon, Ah-Hyeon Kim, Si-Hyun Lee, Yu-Bin Son, Soo-Hyeon Kim, Min-Suk Song, Young Ki Choi, Su-Jin Park; J. Microbiol. 2025;63(11):e2506013. Published online November 30, 2025; DOI: https://doi.org/10.71150/jm.2506013

3,635 View
138 Download

Abstract PDF: Bandavirus dabieense, a single-stranded RNA virus, is the causative agent of severe fever with thrombocytopenia syndrome (SFTS), a disease associated with high fatality rates. Early and accurate diagnosis is essential for improving clinical outcomes, particularly given the limited therapeutic options and high mortality rates associated with SFTS. However, while highly sensitive, conventional diagnostic methods such as PCR and qRT-PCR require specialized laboratory facilities and trained personnel, making them impractical for rapid detection in resource-limited settings. To address these challenges, we developed a rapid and highly sensitive assay for Bandavirus dabieense detection by integrating reverse transcription loop-mediated isothermal amplification (RT-LAMP) with CRISPR/Cas12a technology. LAMP primers and guide RNA sequences were designed to target the L gene, ensuring broad detection across viral genotypes. The optimized assay demonstrated a detection limit of 5 RNA copies per reaction, showing more sensitivity than qRT-PCR, and exhibited 100% concordance with qRT-PCR results in clinical samples. Given its speed, accuracy, and field applicability, this LAMP-CRISPR/Cas12a-based assay represents a promising diagnostic tool for early SFTSV detection, particularly in resource-constrained environments where conventional molecular diagnostics are not readily available.

Erratum

Erratum: Unexpected Requirement of Small Amino Acids at Position 183 for DNA Binding in the Escherichia coli cAMP Receptor Protein: Marcus Carranza, Amanda Rea, Daisy Pacheco, Christian Montiel, Jin Park, Hwan Youn; J. Microbiol. 2024;62(12):1177-1177. Published online November 6, 2024; DOI: https://doi.org/10.1007/s12275-024-00189-y

536 View
13 Download

PDF

Article

Lipoteichoic Acid from Lacticaseibacillus rhamnosus GG as a Novel Intracanal Medicament Targeting Enterococcus faecalis Biofilm Formation: Ji-Young Yoon, Somin Park, Dongwook Lee, Ok-Jin Park, WooCheol Lee, Seung Hyun Han; J. Microbiol. 2024;62(10):897-905. Published online September 30, 2024; DOI: https://doi.org/10.1007/s12275-024-00165-6

894 View
15 Download
2 Web of Science
3 Crossref

Abstract PDF

The demand for safe and effective endodontic medicaments to control Enterococcus faecalis biofilms, a contributor to apical periodontitis, is increasing. Recently, lipoteichoic acid (LTA) of family Lactobacillaceae has been shown to have anti-biofilm effects against various oral pathogens. Preliminary experiments showed that LTA purified from Lacticaseibacillus rhamnosus GG (Lgg.LTA) was the most effective against E. faecalis biofilms among LTAs from three Lactobacillaceae including L. rhamnosus GG, Lacticaseibacillus casei, and Lactobacillus acidophilus. Therefore, in this study, we investigated the potential of Lgg.LTA as an intracanal medicament in human root canals infected with E. faecalis. Twenty eight dentinal cylinders were prepared from extracted human teeth, where two-week-old E. faecalis biofilms were formed followed by intracanal treatment with sterile distilled water (SDW), N-2 methyl pyrrolidone (NMP), calcium hydroxide (CH), or Lgg.LTA. Bacteria and biofilms that formed in the root canals were analyzed by scanning electron microscopy and confocal laser scanning microscopy. The remaining E. faecalis cells in the root canals after intracanal medicament treatment were enumerated by culturing and counting. When applied to intracanal biofilms, Lgg.LTA effectively inhibited E. faecalis biofilm formation as much as CH, while SDW and NMP had little effect. Furthermore, Lgg.LTA reduced both live and dead bacteria within the dentinal tubules, indicating the possibility of minimal re-infection in the root canals. Collectively, intracanal application of Lgg.LTA effectively inhibited E. faecalis biofilm formation, implying that Lgg.LTA can be used as a novel endodontic medicament.

Citations

Citations to this article as recorded by

The dual role of teichoic acids in gram-positive bacteria: Structural diversity dictates pathogenic and probiotic functions
Hao-Ran Zhang, Jun Meng, Yun-Peng Hao, Jun Xi, Chang-He Ding, Jing-Qian Song, Xiao-Yue Wang, Zai-Chen Li, Yue Meng, Jing-Yi Yang
International Journal of Biological Macromolecules.2026; 350: 150925. CrossRef
A critical review on innovative targets for signal disruption in Enterococcus faecalis infection management
Kayeen Vadakkan, Gajanan Sampatrao Ghodake, Chin Wei Lai, Selvaraj Vijayanand, Janarthanam Hemapriya
Microbial Pathogenesis.2025; 207: 107876. CrossRef
Assessing the Diagnostic Accuracy of Soluble Urokinase Plasminogen Activator Receptor and Lipoteichoic Acid Biomarkers in Gram-Positive Bacterial Pathogen for Timely Detection and Differentiation of Colonization versus Active Infection
Mohammed Sadeq Khalife, Sawsan M. Jabbar AL-Hasnawi, May Mohammed Ali
Journal of Bacteriology and Virology.2025; 55(3): 222. CrossRef

Article

Unexpected Requirement of Small Amino Acids at Position 183 for DNA Binding in the Escherichia coli cAMP Receptor Protein: Marcus Carranza, Amanda Rea, Daisy Pacheco, Christian Montiel, Jin Park, Hwan Youn; J. Microbiol. 2024;62(10):871-882. Published online September 6, 2024; DOI: https://doi.org/10.1007/s12275-024-00169-2

1,028 View
13 Download
5 Web of Science
2 Crossref

Abstract PDF

The Escherichia coli cAMP receptor protein (CRP) relies on the F-helix, the recognition helix of the helix-turn-helix motif, for DNA binding. The importance of the CRP F-helix in DNA binding is well-established, yet there is little information on the roles of its non-base-contacting residues. Here, we show that a CRP F-helix position occupied by a non-base-contacting residue Val183 bears an unexpected importance in DNA binding. Codon randomization and successive in vivo screening selected six amino acids (alanine, cysteine, glycine, serine, threonine, and valine) at CRP position 183 to be compatible with DNA binding. These amino acids are quite different in their amino acid properties (polar, non-polar, hydrophobicity), but one commonality is that they are all relatively small. Larger amino acid substitutions such as histidine, methionine, and tyrosine were made site-directedly and showed to have no detectable DNA binding, further supporting the requirement of small amino acids at CRP position 183. Bioinformatics analysis revealed that small amino acids (92.15% valine and 7.75% alanine) exclusively occupy the position analogous to CRP Val183 in 1,007 core CRP homologs, consistent with our mutant data. However, in extended CRP homologs comprising 3700 proteins, larger amino acids could also occupy the position analogous to CRP Val183 albeit with low occurrence. Another bioinformatics analysis suggested that large amino acids could be tolerated by compensatory small-sized amino acids at their neighboring positions. A full understanding of the unexpected requirement of small amino acids at CRP position 183 for DNA binding entails the verification of the hypothesized compensatory change(s) in CRP.

Citations

Citations to this article as recorded by

Adaptive evolution resulted in three subtypes of the Riemerella anatipestifer crpR1 gene
Jialing Wang, Xiaoli Du, Hui Yin, Xiaoying Zhang, Shiqi Wang, Hongyan Liao, Xingyu Zhang, Yuting Zheng, Qinghai Hu
Journal of Bacteriology.2026;[Epub] CrossRef
SPD_0410 negatively regulates capsule polysaccharide synthesis and virulence in Streptococcus pneumoniae D39
Ye Tao, Li Lei, Shuhui Wang, Xuemei Zhang, Yibing Yin, Yuqiang Zheng
Frontiers in Microbiology.2025;[Epub] CrossRef

Article

Lipocalin2 as a potential antibacterial drug against Acinetobacter baumannii infection: Daejin Lim , Su-Jin Park , Ha Young Kim , Minsang Shin , Miryoung Song; J. Microbiol. 2022;60(4):444-449. Published online March 28, 2022; DOI: https://doi.org/10.1007/s12275-022-2007-1

911 View
4 Download
4 Web of Science
4 Crossref

Abstract PDF

Available antibiotics to treat Acinetobacter baumannii infection is limited due to increasing resistance and the emergence of multiple drug-resistant strains. Hence, discovering effective agents against A. baumannii to reduce the number of infectionrelated deaths is imperative. In search of novel and alternative antibiotics, the antibacterial function of lipocalin2 (Lcn2) was investigated to treat systemic infections of A. baumannii using a mouse neutropenia model. We observed a significant increase in serum Lcn2 levels upon bacterial injection into the mouse, and the administration of recombinant Lcn2 (rmLcn2) extended their survival. Such protective effects were also observed in rmLcn2-pretreated macrophages, where rmLcn2 reduced the survival of the pathogen inside the macrophages. The underlying molecular mechanism of Lcn2 protection was also investigated. We observed that pretreatment of the Raw- 264.7 macrophages with rmLcn2 markedly altered the expression of tonB3, which encodes a component of the transporter for ferrisiderophores in A. baumannii. However, the expression of katG, the gene encoding catalase, remained unaffected. These indicate that Lcn2-mediated defense against the pathogen is related to nutritional immunity rather than reactive oxygen species (ROS) production. Furthermore, the addition of rmLcn2 in infected mice diminished bacterial burden in multiple organs and enhanced the expression of tonB3 in the liver, spleen, and lungs of the infected mice. Increased survival rate due to rmLcn2 treatment declined when the infection model was established using lcn2-defective (lcn2-/-) mice, which indicated the necessity of endogenous Lcn2. Therefore, the antibacterial function of Lcn2 can be exploited to develop an alternative therapeutic agent against A. baumannii.

Citations

Citations to this article as recorded by

Liver as a key organ for systemic antimicrobial defense
Tiantian Yao, Luca Maccioni, Yukun Guan, Robim M. Rodrigues, Bin Gao
Hepatology Communications.2025;[Epub] CrossRef
Antimicrobial peptide thanatin fused endolysin PA90 (Tha-PA90) for the control of Acinetobacter baumannii infection in mouse model
Jeonghyun Lim, Heejoon Myung, Daejin Lim, Miryoung Song
Journal of Biomedical Science.2024;[Epub] CrossRef
Dynamic changes and clinical value of lipocalin 2 in liver diseases caused by microbial infections
Feng Chen, Shan-Shan Wu, Chao Chen, Cheng Zhou
World Journal of Hepatology.2024; 16(2): 177. CrossRef
Lipocalin-2 is an essential component of the innate immune response to Acinetobacter baumannii infection
Jessica R. Sheldon, Lauren E. Himmel, Dillon E. Kunkle, Andrew J. Monteith, K. Nichole Maloney, Eric P. Skaar, David S. Weiss
PLOS Pathogens.2022; 18(9): e1010809. CrossRef

Article

Differences in seroprevalence between epicenter and non-epicenter areas of the COVID-19 outbreak in South Korea: Hye Won Jeong , Hyun-Ha Chang , Eun Ji Kim , Yu Kyung Kim , Se-Mi Kim , Eun-Ha Kim , Young-Il Kim , Mark Anthony B. Casel , Seong-Gyu Kim , Rare Rollon , Seung-Gyu Jang , Kwang-Min Yu , Hee-Sung Kim , Hee Sue Park , Su-Jin Park , Yong-Dae Kim , Eung-Gook Kim , Young Ki Choi; J. Microbiol. 2021;59(5):530-533. Published online April 28, 2021; DOI: https://doi.org/10.1007/s12275-021-1095-7

855 View
4 Download
3 Web of Science
3 Crossref

Abstract PDF

To compare the standardized severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) seroprevalence of high epicenter region with non-epicenter region, serological studies were performed with a total of 3,268 sera from Daegu City and 3,981 sera from Chungbuk Province. Indirect immunofluorescence assay (IFA) for SARS-CoV-2 IgG results showed a high seroprevalence rate in the Daegu City (epicenter) compared with a non-epicenter area (Chungbuk Province) (1.27% vs. 0.91%, P = 0.0358). It is noteworthy that the highest seroprevalence in Daegu City was found in elderly patients (70’s) whereas young adult patients (20’s) in Chungbuk Province showed the highest seroprevalence. Neutralizing antibody (NAb) titers were found in three samples from Daegu City (3/3, 268, 0.09%) while none of the samples from Chungbuk Province were NAb positive. These results demonstrated that even following the large outbreak, the seropositive rate of SARS-CoV-2 in the general population remained low in South Korea.

Citations

Citations to this article as recorded by

Integrated Clinical and Social Impacts of the COVID-19 Pandemic in Korea: A Combined Systematic and Narrative Review
Yumi Jang, Jaehun Jung, Kyong Ran Peck
Journal of Korean Medical Science.2026;[Epub] CrossRef
Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
Journal of Microbiology and Biotechnology.2023; 33(12): 1587. CrossRef
The Seroprevalence of SARS-CoV-2 in Children During Early COVID-19 Pandemic in Korea: A Nationwide, Population-Based Study
Jin Lee, Young June Choe, Dohsik Minn, Jong-Hyun Kim
Journal of Korean Medical Science.2022;[Epub] CrossRef

Article

Development of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) thermal inactivation method with preservation of diagnostic sensitivity: Young-Il Kim , Mark Anthony B. Casel , Se-Mi Kim , Seong-Gyu Kim , Su-Jin Park , Eun-Ha Kim , Hye Won Jeong , Haryoung Poo , Young Ki Choi; J. Microbiol. 2020;58(10):886-891. Published online September 29, 2020; DOI: https://doi.org/10.1007/s12275-020-0335-6

939 View
2 Download
28 Web of Science
29 Crossref

Abstract PDF

Various treatments and agents had been reported to inactivate RNA viruses. Of these, thermal inactivation is generally considered an effective and cheap method of sample preparation for downstream assays. The purpose of this study is to establish a safe inactivation method for SARS-CoV-2 without compromising the amount of amplifiable viral genome necessary for clinical diagnoses. In this study, we demonstrate the infectivity and genomic stability of SARSCoV- 2 by thermal inactivation at both 56°C and 65°C. The
results
substantiate that viable SARS-CoV-2 is readily inactivated when incubated at 56°C for 30 min or at 65°C for 10 min. qRT-PCR of specimens heat-inactivated at 56°C for 30 min or 65°C for 15 min revealed similar genomic RNA stability compared with non-heat inactivated specimens. Further, we demonstrate that 30 min of thermal inactivation at 56°C could inactivate viable viruses from clinical COVID-19 specimens without attenuating the qRT-PCR diagnostic sensitivity. Heat treatment of clinical specimens from COVID-19 patients at 56°C for 30 min or 65°C for 15 min could be a useful
method
for the inactivation of a highly contagious agent, SARS-CoV-2. Use of this method would reduce the potential for secondary infections in BSL2 conditions during diagnostic procedures. Importantly, infectious virus can be inactivated in clinical specimens without compromising the sensitivity of the diagnostic RT-PCR assay.

Citations

Citations to this article as recorded by

CRISPR/Cas13a-enhanced FRET-PAINT (CFP) platform for highly sensitive detection of schistosome-derived miRNA
Mengzhu Guo, Jiamei Zhong, Ziyue Xu, Tianyu Chen, Hongfeng Cui, Qi Wen, Shuying Xie, Yifei Yang, Xian Hao
Sensors and Actuators Reports.2026; 11: 100423. CrossRef
Evaluating Interlaboratory Variability in Wastewater-Based COVID-19 Surveillance
Arianna Azzellino, Laura Pellegrinelli, Ramon Pedrini, Andrea Turolla, Barbara Bertasi, Sandro Binda, Sara Castiglioni, Clementina E. Cocuzza, Fabio Ferrari, Andrea Franzetti, Maria Giovanna Guiso, Marina Nadia Losio, Marianna Martinelli, Antonino Martine
Microorganisms.2025; 13(3): 526. CrossRef
Electrochemical genomagnetic assay for detection of SARS-CoV-2 RNA using a disposable microfluidic platform
Daniel Júnior Almeida dos Santos, Tássia Regina de Oliveira, Henrique Pott-Junior, Matias Eliseo Melendez, Ester Cerdeira Sabino, Ronaldo Censi Faria
Talanta.2025; 294: 128186. CrossRef
Development of COPMAN-Air method for high-sensitivity detection of SARS-CoV-2 in air
Tomoyo Yoshinaga, Yoshinori Ando, Yumi Sato, Takeru Kishida, Masaaki Kitajima
Scientific Reports.2025;[Epub] CrossRef
Significant Reduction of Chenodeoxycholic Acid and Glycochenodeoxycholic Acid in the Elderly with Severe COVID-19
Shiyang Liu, Wen Xu, Bo Tu, Zhiqing Xiao, Xue Li, Lei Huang, Xin Yuan, Shengdong Luo, Juanjuan Zhou, Xinxin Yang, Junlian Yang, De Chang, Weiwei Chen, Fu-Sheng Wang
Biomolecules.2025; 15(7): 943. CrossRef
The impact of heat inactivation on RT-qPCR detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2): an experience from the University Clinical Centre of Vojvodina, Serbia
Jelena Stojčević Maletić, Iva Barjaktarović, Ljiljana Andrijević, Katarina Bačulov, Slobodanka Bogdanović Vasić, Diandra Pintać Šarac
Archives of Industrial Hygiene and Toxicology.2025; 76(4): 242. CrossRef
Establishment of national standards of SARS-CoV-2 variants in Taiwan
Ming-Sian Wu, Pu-Chieh Chang, Po-Lin Lin, Chun-Hsi Tso, Hsin-Mei Chen, Yi-Hsuan Peng, Po-Chih Wu, Jia-Chuan Hsu, Der-Yuan Wang
Heliyon.2024; 10(19): e38275. CrossRef
EU surveys insights: analytical tools, future directions, and the essential requirement for reference materials in wastewater monitoring of SARS-CoV-2, antimicrobial resistance and beyond
Valentina Paracchini, Mauro Petrillo, Anandasagari Arcot Rajashekar, Piotr Robuch, Ursula Vincent, Philippe Corbisier, Simona Tavazzi, Barbara Raffael, Elisabetta Suffredini, Giuseppina La Rosa, Bernd Manfred Gawlik, Antonio Marchini
Human Genomics.2024;[Epub] CrossRef
Silica-coated magnetic particles for efficient RNA extraction for SARS-CoV-2 detection
Natalia Capriotti, Leslie C. Amorós Morales, Elisa de Sousa, Luciana Juncal, Matias Luis Pidre, Lucila Traverso, Maria Florencia López, Maria Leticia Ferelli, Gabriel Lavorato, Cristian Lillo, Odin Vazquez Robaina, Nicolas Mele, Carolina Vericat, Patricia
Heliyon.2024; 10(3): e25377. CrossRef
Validating the inactivation of viral pathogens with a focus on SARS-CoV-2 to safely transfer samples from high-containment laboratories
Sankar Prasad Chaki, Melissa M. Kahl-McDonagh, Benjamin W. Neuman, Kurt A. Zuelke
Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef
COPMAN: A novel high-throughput and highly sensitive method to detect viral nucleic acids including SARS-CoV-2 RNA in wastewater
Yuka Adachi Katayama, Shin Hayase, Yoshinori Ando, Tomohiro Kuroita, Kazuya Okada, Ryo Iwamoto, Toru Yanagimoto, Masaaki Kitajima, Yusaku Masago
Science of The Total Environment.2023; 856: 158966. CrossRef
Sputum handling for rheology
Lydia Esteban Enjuto, Matthieu Robert de Saint Vincent, Max Maurin, Bruno Degano, Hugues Bodiguel
Scientific Reports.2023;[Epub] CrossRef
A novel strategy to avoid sensitivity loss in pooled testing for SARS-CoV-2 surveillance: validation using nasopharyngeal swab and saliva samples
Georgia G. Millward, Shane M. Popelka, Anthony G. Gutierrez, William J. Kowallis, Robert L. von Tersch, Subrahmanyam V. Yerramilli
Frontiers in Public Health.2023;[Epub] CrossRef
The Biosafety Research Road Map: The Search for Evidence to Support Practices in the Laboratory—SARS-CoV-2
Stuart D. Blacksell, Sandhya Dhawan, Marina Kusumoto, Kim Khanh Le, Kathrin Summermatter, Joseph O'Keefe, Joseph Kozlovac, Salama Suhail Almuhairi, Indrawati Sendow, Christina M. Scheel, Anthony Ahumibe, Zibusiso M. Masuku, Kazunobu Kojima, David R. Harpe
Applied Biosafety.2023; 28(2): 87. CrossRef
Comparative Performance of Serological (IgM/IgG) and Molecular Testing (RT-PCR) of COVID-19 in Three Private Universities in Cameroon during the Pandemic
Rodrigue Kamga Wouambo, Cecile Ingrid Djuikoué, Livo Forgu Esemu, Luc Aime Kagoue Simeni, Murielle Chantale Tchitchoua, Paule Dana Djouela Djoulako, Joseph Fokam, Madeleine Singwe-Ngandeu, Eitel Mpoudi Ngolé, Teke Apalata
Viruses.2023; 15(2): 407. CrossRef
Molecular test for COVID-19 diagnosis based on a colorimetric genomagnetic assay
Tássia Regina de Oliveira, Taíse Helena Oliveira Leite, Wyllian Neves Miranda, Erika Regina Manuli, Fábio Leal, Ester Sabino, Henrique Pott-Junior, Matias Melendez, Ronaldo Censi Faria
Analytica Chimica Acta.2023; 1257: 341167. CrossRef
Methods of Inactivation of Highly Pathogenic Viruses for Molecular, Serology or Vaccine Development Purposes
Simon Elveborg, Vanessa Monteil, Ali Mirazimi
Pathogens.2022; 11(2): 271. CrossRef
A collaborative study to establish the national standard for SARS-CoV-2 RNA nucleic acid amplification techniques (NAAT) in Taiwan
Po-Lin Lin, Ming-Sian Wu, Po-Chi Wu, Hsin-Mei Chen, Yi-Hsuan Peng, Jia-Chuan Hsu, Der-Yuan Wang
Biologicals.2022; 79: 31. CrossRef
COVID-19 diagnosis by SARS-CoV-2 Spike protein detection in saliva using an ultrasensitive magneto-assay based on disposable electrochemical sensor
Evair D. Nascimento, Wilson T. Fonseca, Tássia R. de Oliveira, Camila R.S.T.B. de Correia, Vitor M. Faça, Beatriz P. de Morais, Virginia C. Silvestrini, Henrique Pott-Junior, Felipe R. Teixeira, Ronaldo C. Faria
Sensors and Actuators B: Chemical.2022; 353: 131128. CrossRef
Use of MALDI-TOF mass spectrometry for virus identification: a review
Tomas Do, Roman Guran, Vojtech Adam, Ondrej Zitka
The Analyst.2022; 147(14): 3131. CrossRef
COPMAN: A Novel High-Throughput and Highly Sensitive Method to Detect Viral Nucleic Acids Including SARS-CoV-2 RNA in Wastewater
Yuka Adachi Katayama, Shin Hayase, Yoshinori Ando, Tomohiro Kuroita, Kazuya Okada, Ryo Iwamoto, Toru Yanagimoto, Masaaki Kitajima, Yusaku Masago
SSRN Electronic Journal .2022;[Epub] CrossRef
Effect of heat inactivation for the detection of severe acute respiratory syndrome-corona virus-2 (SARS-CoV-2) with reverse transcription real time polymerase chain reaction (rRT-PCR): evidence from Ethiopian study
Belete Woldesemayat, Gebremedihin Gebremicael, Kidist Zealiyas, Amelework Yilma, Sisay Adane, Mengistu Yimer, Gadissa Gutema, Altaye Feleke, Kassu Desta
BMC Infectious Diseases.2022;[Epub] CrossRef
Evaluation of the SARS-CoV-2 Inactivation Efficacy Associated With Buffers From Three Kits Used on High-Throughput RNA Extraction Platforms
Ruth E. Thom, Lin S. Eastaugh, Lyn M. O’Brien, David O. Ulaeto, James S. Findlay, Sophie J. Smither, Amanda L. Phelps, Helen L. Stapleton, Karleigh A. Hamblin, Simon A. Weller
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef
Viral Inactivation Impacts Microbiome Estimates in a Tissue-Specific Manner
Alba Boix-Amorós, Enrica Piras, Kevin Bu, David Wallach, Matthew Stapylton, Ana Fernández-Sesma, Dolores Malaspina, Jose C. Clemente, Ileana M. Cristea
mSystems.2021;[Epub] CrossRef
Alternative RNA extraction-free techniques for the real-time RT-PCR detection of SARS-CoV-2 in nasopharyngeal swab and sputum samples
Stephany D. Villota, Victoria E. Nipaz, Andrés Carrazco-Montalvo, Sarah Hernandez, Jesse J. Waggoner, Patricio Ponce, Josefina Coloma, Alberto Orlando, Varsovia Cevallos
Journal of Virological Methods.2021; 298: 114302. CrossRef
Comparison of the Modified Centers for Disease Control and Prevention 2019-Novel Coronavirus Real-Time RT-PCR Method for Detection of Infectious and Heat-Inactivated Virus on Stainless Steel
Sharon L Brunelle, Patrick M Bird, Jeremy Boone, Maria Nelson, Zerlinde Johnson, Scott Coates
Journal of AOAC INTERNATIONAL.2021; 104(4): 867. CrossRef
Heat-Treated Virus Inactivation Rate Depends Strongly on Treatment Procedure: Illustration with SARS-CoV-2
Amandine Gamble, Robert J. Fischer, Dylan H. Morris, Claude Kwe Yinda, Vincent J. Munster, James O. Lloyd-Smith, Christopher A. Elkins
Applied and Environmental Microbiology.2021;[Epub] CrossRef
Comparison of Seven Commercial Severe Acute Respiratory Syndrome Coronavirus 2 Nucleic Acid Detection Reagents with Pseudovirus as Quality Control Material
Ying Yan, Le Chang, Wenxin Luo, Junyi Liu, Fei Guo, Lunan Wang
The Journal of Molecular Diagnostics.2021; 23(3): 300. CrossRef
Evaluation of the persistence of SARS-CoV-2 (ATCC® VR-1986HK™) on two different food contact materials: flow pack polyethylene and polystyrene food trays
Marta Castrica, Claudia Balzaretti, Dino Miraglia, Patrizio Lorusso, Annamaria Pandiscia, Giuseppina Tantillo, Francesca Romana Massacci, Valentina Terio
LWT.2021; 146: 111606. CrossRef

Article

Propionate, together with triple antibiotics, inhibits the growth of Enterococci: Soyoung Jeong , Yunjae Lee , Cheol-Heui Yun , Ok-Jin Park , Seung Hyun Han; J. Microbiol. 2019;57(11):1019-1024. Published online October 28, 2019; DOI: https://doi.org/10.1007/s12275-019-9434-7

888 View
0 Download
17 Web of Science
17 Crossref

Abstract PDF

Enterococci are Gram-positive facultative anaerobic bacteria that colonize the oral cavity and gastrointestinal tract. Enterococcal infections, mainly caused by Enterococcus faecalis and Enterococcus faecium, include apical periodontitis, endocarditis, and bloodstream infections. Recently, vancomycinresistant Enterococci are considered major pathogens that are common but difficult to treat, especially in nosocomial settings. Moreover, E. faecalis is closely associated with recurrent endodontic infections and failed endodontic treatment. In this study, we investigated the effects of short-chain fatty acids (SCFAs), acetate, propionate, and butyrate, which are metabolites fermented by gut microbiota, on the growth of Enterococci. Enterococci were cultured in the presence or absence of acetate, propionate, or butyrate, and the optical density at 600 nm was measured to determine bacterial growth. The minimum inhibitory concentration/minimum bactericidal concentration test was conducted. Bacteria were treated with a SCFA, together with clinically used endodontic treatment methods such as triple antibiotics (metronidazole, minocycline, and ciprofloxacin) and chlorhexidine gluconate (CHX) to determine the effects of combination treatment. Of the SCFAs, propionate had a bacteriostatic effect, inhibiting the growth of E. faecalis in a dose-dependent manner and also that of clinical strains of E. faecalis isolated from dental plaques. Meanwhile, acetate and butyrate had minimal effects on E. faecalis growth. Moreover, propionate inhibited the growth of other Enterococci including E. faecium. In addition, combination treatment of propionate and triple antibiotics led to further growth inhibition, whereas no cooperative effect was observed at propionate plus CHX. These results indicate that propionate attenuates the growth of Enterococci, suggesting propionate as a potential agent to control Enterococcal infections, especially when combined with triple antibiotics.

Citations

Citations to this article as recorded by

Modulation of gut microbiota and short-chain fatty acids by probiotics attenuates inflammation in endometriosis
Xiaoli Dong, Fang Xie, Ping Li
Frontiers in Microbiology.2026;[Epub] CrossRef
A phase 2 randomized, placebo-controlled trial of inulin for the prevention of gut pathogen colonization and infection among patients admitted to the intensive care unit for sepsis
Heekuk Park, Elissa Lynch, Alice Tillman, Kristen Lewis, Zhezhen Jin, Anne-Catrin Uhlemann, Julian A. Abrams, Daniel E. Freedberg
Critical Care.2025;[Epub] CrossRef
Repurposing astemizole to kill multidrug-resistant bacteria isolated in general surgery
Daxing Cao, Guihua Liu, Ying Wang, Xiaoxue Xia
Microbial Pathogenesis.2025; 200: 107369. CrossRef
Serotype-Dependent Inhibition of Streptococcus pneumoniae Growth by Short-Chain Fatty Acids
Suwon Lim, Dongwook Lee, Sungho Jeong, Jeong Woo Park, Jintaek Im, Bokeum Choi, Donghyun Gwak, Cheol-Heui Yun, Ho Seong Seo, Seung Hyun Han
Journal of Microbiology and Biotechnology.2024; 34(1): 47. CrossRef
Microbiota signatures associated with invasive Candida albicans infection in the gastrointestinal tract of immunodeficient mice
Jia-Ying Yan, Tsung-Han Lin, Yu-Tang Jong, Jun-Wei Hsueh, Sze-Hsien Wu, Hsiu-Jung Lo, Yee-Chun Chen, Chien-Hsiung Pan
Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef
Diet-induced changes in the jejunal microbiota of developing broilers reduce the abundance of Enterococcus hirae and Enterococcus faecium
Paul B. Stege, Dirkjan Schokker, Frank Harders, Soumya K. Kar, Norbert Stockhofe, Vera Perricone, Johanna M. J. Rebel, Ingrid C. de Jong, Alex Bossers
BMC Genomics.2024;[Epub] CrossRef
Enterococcus faecium: evolution, adaptation, pathogenesis and emerging therapeutics
Yahan Wei, Dennise Palacios Araya, Kelli L. Palmer
Nature Reviews Microbiology.2024; 22(11): 705. CrossRef
Mechanisms of probiotic Bacillus against enteric bacterial infections
Jiajia Zhu, Yunsheng Chen, Kálmán Imre, Damla Arslan-Acaroz, Fatih Ramazan Istanbullugil, Yuwen Fang, Gaspar Ros, Kui Zhu, Ulas Acaroz
One Health Advances.2023;[Epub] CrossRef
Structural features and anticancer mechanisms of pectic polysaccharides: A review
Fangfang Yue, Jiaxin Xu, Sitan Zhang, Xinyu Hu, Xin Wang, Xin Lü
International Journal of Biological Macromolecules.2022; 209: 825. CrossRef
Dual role of microbiota-derived short-chain fatty acids on host and pathogen
Rasoul Mirzaei, Elahe Dehkhodaie, Behnaz Bouzari, Mandana Rahimi, Abolfazl Gholestani, Seyed Reza Hosseini-Fard, Hossein Keyvani, Ali Teimoori, Sajad Karampoor
Biomedicine & Pharmacotherapy.2022; 145: 112352. CrossRef
RNA-Seq-based transcriptome analysis of methicillin-resistant Staphylococcus aureus growth inhibition by propionate
Jintaek Im, Dongwook Lee, Ok-Jin Park, Sathishkumar Natarajan, Junhyung Park, Cheol-Heui Yun, Seung Hyun Han
Frontiers in Microbiology.2022;[Epub] CrossRef
Propionate Attenuates Growth of Oral Streptococci through Enhancing Methionine Biosynthesis
Taehwan Park, Jintaek Im, A Reum Kim, Dongwook Lee, Sungho Jeong, Cheol-Heui Yun, Seung Hyun Han
Journal of Microbiology and Biotechnology.2022; 32(10): 1234. CrossRef
Bacterial-Induced Blood Pressure Reduction: Mechanisms for the Treatment of Hypertension via the Gut
Tyler Alexander Cookson
Frontiers in Cardiovascular Medicine.2021;[Epub] CrossRef
Influence of operating conditions on the persistence of E. coli, enterococci, Clostridium perfringens and Clostridioides difficile in semi-continuous mesophilic anaerobic reactors
Derongs Lorine, Druilhe Céline, Le Maréchal Caroline, Barbut Frédéric, Heurtevent Lorette, Buffet Julie, Martin Laure, Ziebal Christine, Poezevara Typhaine, Rouxel Sandra, Houard Emmanuelle, Syed Zaidi Rabab, Couturier Jeanne, Pourcher Anne-Marie
Waste Management.2021; 134: 32. CrossRef
Short-Chain Fatty Acids as a Potential Treatment for Infections: a Closer Look at the Lungs
Marina Gomes Machado, Valentin Sencio, François Trottein, Andreas J. Bäumler
Infection and Immunity.2021;[Epub] CrossRef
The lung–gut axis during viral respiratory infections: the impact of gut dysbiosis on secondary disease outcomes
Valentin Sencio, Marina Gomes Machado, François Trottein
Mucosal Immunology.2021; 14(2): 296. CrossRef
Enhanced biofilm formation of Streptococcus gordonii with lipoprotein deficiency
Ok‐Jin Park, Solmin Jung, Taehwan Park, A Reum Kim, Dongwook Lee, Hyun Jung Ji, Ho Seong Seo, Cheol‐Heui Yun, Seung Hyun Han
Molecular Oral Microbiology.2020; 35(6): 271. CrossRef

Article

Efficacy of A/H1N1/2009 split inactivated influenza A vaccine (GC1115) in mice and ferrets: Hae Jung Han , Min-Suk Song , Su-Jin Park , Han Yeul Byun , Norbert John C. Robles , Suk-Hoon Ha , Young Ki Choi; J. Microbiol. 2019;57(2):163-169. Published online January 31, 2019; DOI: https://doi.org/10.1007/s12275-019-8504-1

823 View
3 Download
4 Web of Science
4 Crossref

Abstract PDF

To evaluate the efficacy of a non-adjuvant A/H1N1/2009 influenza A vaccine (GC1115), we demonstrated the immunogenicity and protective efficacy of GC1115 in mouse and ferret models. The immunogenicity of GC1115 was confirmed after intramuscular administration of 1.875, 3.75, 7.5, and 15 μg hemagglutinin antigen (HA) in mice and 7.5, 15, and 30 μg HA in ferrets at 3-week intervals. A single immunization with GC1115 at HA doses > 7.5 μg induced detectable seroconversion in most mice, and all mice given a second dose exhibited high antibody responses in a dose-dependent manner. The mice in the mock (PBS) and 1.875 μg HA immunized groups succumbed by 13 days following A/California/ 04/09 infection, while all mice in groups given more than 3.75 μg HA were protected from lethal challenge with the A/California/04/09 virus. In ferrets, although immunization with even a single dose of 15 or 30 μg of HA induced detectable HI antibodies, all ferrets given two doses of vaccine seroconverted and exhibited HI titers greater than 80 units. Following challenge with A/California/04/09, the mock (PBS) immunized ferrets showed influenza-like clinical symptoms, such as increased numbers of coughs, elevated body temperature, and body weight loss, for 7 days, while GC1115- immunized ferrets showed attenuated clinical symptoms only for short time period (3–4 days). Further, GC1115-immunized ferrets displayed significantly lower viral titers in the upper respiratory tract (nasal cavity) than the mock vaccinated group in a dose-dependent manner. Taken together, this study demonstrates the immunogenicity and protective efficacy of GC1115 as a non-adjuvanted vaccine.

Citations

Citations to this article as recorded by

Dose sparing enabled by immunization with influenza vaccine using orally dissolving film
Keon-Woong Yoon, Ki Back Chu, Gi-Deok Eom, Jie Mao, Su In Heo, Fu-Shi Quan
International Journal of Pharmaceutics.2024; 667: 124945. CrossRef
Ferrets as a model for tuberculosis transmission
Tuhina Gupta, Naveen Somanna, Thomas Rowe, Monica LaGatta, Shelly Helms, Simon Odera Owino, Tomislav Jelesijevic, Stephen Harvey, Wayne Jacobs, Thomas Voss, Kaori Sakamoto, Cheryl Day, Christopher Whalen, Russell Karls, Biao He, S. Mark Tompkins, Abhijeet
Frontiers in Cellular and Infection Microbiology.2022;[Epub] CrossRef
AddaVax Formulated with PolyI:C as a Potential Adjuvant of MDCK-based Influenza Vaccine Enhances Local, Cellular, and Antibody Protective Immune Response in Mice
Xuanxuan Nian, Jiayou Zhang, Tao Deng, Jing Liu, Zheng Gong, Chuanshuo Lv, Luyao Yao, Junying Li, Shihe Huang, Xiaoming Yang
AAPS PharmSciTech.2021;[Epub] CrossRef
The Intersection of Age and Influenza Severity: Utility of Ferrets for Dissecting the Age-Dependent Immune Responses and Relevance to Age-Specific Vaccine Development
Melissa Rioux, Magen E. Francis, Cynthia L. Swan, Anni Ge, Andrea Kroeker, Alyson A. Kelvin
Viruses.2021; 13(4): 678. CrossRef

Article

Lipoteichoic acids of lactobacilli inhibit Enterococcus faecalis biofilm formation and disrupt the preformed biofilm: Solmin Jung , Ok-Jin Park , A Reum Kim , Ki Bum Ahn , Dongwook Lee , Kee-Yeon Kum , Cheol-Heui Yun , Seung Hyun Han; J. Microbiol. 2019;57(4):310-315. Published online January 22, 2019; DOI: https://doi.org/10.1007/s12275-019-8538-4

963 View
2 Download
61 Web of Science
60 Crossref

Abstract PDF

Enterococcus faecalis, a Gram-positive bacterium commonly isolated in patients with refractory apical periodontitis, invades dentin tubules easily and forms biofilms. Bacteria in biofilms, which contribute to recurrent and/or chronic inflammatory diseases, are more resistant to antimicrobial agents than planktonic cells and easily avoid phagocytosis. Although Lactobacillus plantarum lipoteichoic acid (Lp.LTA) is associated with biofilm formation, the effect of Lp.LTA on biofilm formation by E. faecalis is not clearly understood. In this study, we investigated whether Lp.LTA inhibits E. faecalis biofilm formation. The degree of biofilm formation was determined by using crystal violet assay and LIVE/DEAD bacteria staining. The quantification of bacterial growth was determined by measuring the optical density at 600 nm with a spectrophotometer. Formation of biofilms on human dentin slices was observed under a scanning electron microscope. E. faecalis biofilm formation was reduced by Lp.LTA treatment in a dose-dependent manner. Lp.LTA inhibited biofilm development of E. faecalis at the early stage without affecting bacterial growth. LTA from other Lactobacillus species such as Lactobacillus acidophilus, Lactobacillus casei, or Lactobacillus rhamnosus GG also inhibited E. faecalis biofilm formation. In particular, among LTAs from various lactobacilli, Lp.LTA showed the highest inhibitory effect on biofilms formed by E. faecalis. Interestingly, LTAs from lactobacilli could remove the biofilm preformed by E. faecalis. These inhibitory effects were also observed on the surface of human dentin slices. In conclusion, Lactobacillus species LTA inhibits biofilm formation caused by E. faecalis and it could be used as an anti-biofilm agent for prevention or treatment against E. faecalis-associated diseases.

Citations

Citations to this article as recorded by

Magneto-catalytic bio-hybrid bacterial bots efficiently eradicate and remove biofilms in catheters
Sawna Roy, Siddhartha Sankar Ghosh, Arun Chattopadhyay
Nanoscale.2026; 18(14): 7530. CrossRef
Postbiotics: A promising frontier in improving periodontal disease
Congxin Dong, Tian Liu, Chun Li, Guofang Zhang, Libo Liu, Peng Du, Aili Li
Food Nutrition.2026; 2(1): 100041. CrossRef
Postbiotics at the interface of microbial biotechnology and therapeutics: industrial production, functional mechanisms, and clinical potentials
K. Balakrishna, G. Naveena, J. Joseph Kingston
Archives of Microbiology.2026;[Epub] CrossRef
Immunomodulatory Role of Milk on Gut Microbiota: Implications for Enhancing Oral Vaccine Efficacy
Nur Ain Mohd Asri, Solehah Mohd Rosdan Bushra, Amiratul Aifa Mohamad Asri, Rapeah Suppian, Mohd Nor Norazmi
Probiotics and Antimicrobial Proteins.2026; 18(3): 3648. CrossRef
Antibiofilm potential of Lactobacillus paraprobiotics and postbiotics: sustainable alternatives to antimicrobials
Humma Niaz Malik, Prasun Kumar, Subhasree Ray
Journal of Applied Microbiology.2026;[Epub] CrossRef
Postbiotics as natural antimicrobials: a novel biocontrol strategy for food safety
Ayse Nur Erdinc, Gizem Cufaoglu
Frontiers in Bacteriology.2026;[Epub] CrossRef
Lactic acid bacteria-derived biosurfactants: emerging strategies for biofilm control, virulence attenuation, and food safety
Nazia Tabassum, Taehyeong Kim, Fazlurrahman Khan
World Journal of Microbiology and Biotechnology.2026;[Epub] CrossRef
A preliminary antimicrobial investigation of lactobacillus bulgaricus probiotic supernatants as an intracanal medication against mature E. faecalis biofilm in an ex-vivo dentin blocks model
Sherif Heidar, Hayam Y. Hassan, Edgar Schäfer, Shehabeldin Saber
Clinical Oral Investigations.2026;[Epub] CrossRef
Inhibitory effect and mechanism of violacein on planktonic growth, spore germination, biofilm formation and toxin production of Bacillus cereus and its application in grass carp preservation
Xiangdi Lou, Qiang Zhou, Qiyue Jiang, Liping Lin, Wenwu Zhu, Xiaoyu Mei, Jianhua Xiong, Yanyan Gao
International Journal of Food Microbiology.2025; 426: 110917. CrossRef
Chemical structure of lipoteichoic acid in the probiotic strain Latilactobacillus curvatus CP2998
Tsukasa Shiraishi, Ryo Katsuki, Hiroyuki Kumeta, Shinji Sakata, Shin-ichi Yokota
FEMS Microbiology Letters.2025;[Epub] CrossRef
Lipoteichoic acid from a canine probiotic strain Lacticaseibacillus rhamnosus possesses anti-biofilm capacity against clinically isolated canine periodontopathic Porphyromonas species
Somin Park, Jeongmin Shin, Woohyung Jun, Dongwook Lee, San Kim, Dong Uk Ha, Jintaek Im, Seung Hyun Han
Microbial Pathogenesis.2025; 205: 107660. CrossRef
Optimization of the Purification Process for Lactiplantibacillus plantarum Lipoteichoic Acid with Anti-Biofilm Properties against Dental Pathogens
Jeongmin Shin, Dong Hyun Park, Woohyung Jun, Ok-Jin Park, Cheol-Heui Yun, Jintaek Im, Seung Hyun Han
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef
A Novel Enterococcus Phage Endolysin Lys22 with a Wide Host Range Against Mixed Biofilm of Enterococcus faecalis, Staphylococcus aureus, and Acinetobacter baumannii
Ziqin Yang, Xue Du, Nannan Hu, Meng-Ai Feng, Jiaoyang Xu, Hailin Jiang, Na Zhang, Honglan Huang, Jinghua Li, Hongyan Shi
Pathogens.2025; 14(10): 1060. CrossRef
A critical review on innovative targets for signal disruption in Enterococcus faecalis infection management
Kayeen Vadakkan, Gajanan Sampatrao Ghodake, Chin Wei Lai, Selvaraj Vijayanand, Janarthanam Hemapriya
Microbial Pathogenesis.2025; 207: 107876. CrossRef
The effects of Lactiplantibacillus plantarum 3-19 and Pediococcus pentosaceus 18-1 on preventing the accumulation of biogenic amines and promoting the production of volatile organic compounds during sour meat fermentation
Hao Shang, Ying Yue, Bingrui Guo, Chaofan Ji, Sufang Zhang, Liang Dong, Ilario Ferrocino, Luca Simone Cocolin, Xinping Lin
International Journal of Food Microbiology.2024; 421: 110806. CrossRef
Small cyclic dipeptide produced by Lactobacillus rhamnosus with anti-biofilm properties against Streptococcus mutans biofilm
Rashmi Niranjan, Sachin Patil, Amrita Dubey, Bimlesh Lochab, Richa Priyadarshini
Biofilm.2024; 8: 100237. CrossRef
Enterococcus Phage vB_EfaS_HEf13 as an Anti-Biofilm Agent Against Enterococcus faecalis
Dongwook Lee, Jintaek Im, A Reum Kim, Woohyung Jun, Cheol-Heui Yun, Seung Hyun Han
Journal of Microbiology.2024; 62(8): 683. CrossRef
Extracellular Proteins Isolated from L. acidophilus as an Osteomicrobiological Therapeutic Agent to Reduce Pathogenic Biofilm Formation, Regulate Chronic Inflammation, and Augment Bone Formation In Vitro
Abinaya Sindu Pugazhendhi, Anouska Seal, Megan Hughes, Udit Kumar, Elayaraja Kolanthai, Fei Wei, Jonathan D. Schwartzman, Melanie J. Coathup
Advanced Healthcare Materials.2024;[Epub] CrossRef
Strategies and mechanisms targeting Enterococcus faecalis biofilms associated with endodontic infections: a comprehensive review
Shipeng Yang, Xiuping Meng, Yuqi Zhen, Quzhen Baima, Yu Wang, Xinmiao Jiang, Zhibo Xu
Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef
Lipoteichoic Acid from Lacticaseibacillus rhamnosus GG as a Novel Intracanal Medicament Targeting Enterococcus faecalis Biofilm Formation
Ji-Young Yoon, Somin Park, Dongwook Lee, Ok-Jin Park, WooCheol Lee, Seung Hyun Han
Journal of Microbiology.2024; 62(10): 897. CrossRef
Isolation, Identification and Antibacterial Characteristics of Lacticaseibacillus rhamnosus YT
Chengran Guan, Feng Li, Peng Yu, Xuan Chen, Yongqi Yin, Dawei Chen, Ruixia Gu, Chenchen Zhang, Bo Pang
Foods.2024; 13(17): 2706. CrossRef
Lactobacillus-derived components for inhibiting biofilm formation in the food industry
Jiaxun Li, Qiuxiang Zhang, Jianxin Zhao, Hao Zhang, Wei Chen
World Journal of Microbiology and Biotechnology.2024;[Epub] CrossRef
Natural aggregation of Lactobacillus: Mechanisms and influencing factors
Shunhe Wang, Lulu Li, Leilei Yu, Fengwei Tian, Jianxin Zhao, Qixiao Zhai, Wei Chen
Food Bioscience.2024; 62: 105007. CrossRef
Hypericum perforatum L. (St. John's Wort) in broilers diet improve growth performance, intestinal microflora and immunity
Ziya İlhan, Muhittin Zengin, Oğuz Koray Bacaksız, Ergün Demir, İsmail Hakkı Ekin, Mehmet Ali Azman
Poultry Science.2024; 103(12): 104419. CrossRef
The role of Lactobacillus plantarum in oral health: a review of current studies
Xinyan Huang, Jianhang Bao, Mingzhen Yang, Yingying Li, Youwen Liu, Yuankun Zhai
Journal of Oral Microbiology.2024;[Epub] CrossRef
Antibacterial effectiveness of multi-strain probiotics supernatants intracanal medication on Enterococcus faecalis biofilm in a tooth model
Shymaa Shaaban, Salma Genena, Alaaeldin Elraggal, Gamal M. Hamad, Marwa A. Meheissen, Sybel Moussa
BMC Oral Health.2023;[Epub] CrossRef
Antioxidant Effects and Probiotic Properties of Latilactobacillus sakei MS103 Isolated from Sweet Pickled Garlic
Heng Li, Changlin Chen, Yuanxin Li, Zhengqiang Li, Chen Li, Chang Luan
Foods.2023; 12(23): 4276. CrossRef
Postbiotics in Human Health: A Narrative Review
Linxi Ma, Huaijun Tu, Tingtao Chen
Nutrients.2023; 15(2): 291. CrossRef
Influence of dietary supplementation with new Lactobacillus strains on hematology, serum biochemistry, nutritional status, digestibility, enzyme activities, and immunity in dogs
Kamonporn Panja, Sathita Areerat, Pipatpong Chundang, Pornsucha Palaseweenun, Nattaphong Akrimajirachoote, Jaruwan Sitdhipo, Punnathorn Thaveethaptaikul, Pennapa Chonpathompikunlert, Kanidta Niwasabutra, Pongsathon Phapugrangkul, Attawit Kovitvadhi
Veterinary World.2023; : 834. CrossRef
Antibacterial and antibiofilm potential of Lacticaseibacillus rhamnosus YT and its cell-surface extract
Chengran Guan, Wenjuan Zhang, Jianbo Su, Feng Li, Dawei Chen, Xia Chen, Yujun Huang, Ruixia Gu, Chenchen Zhang
BMC Microbiology.2023;[Epub] CrossRef
Mechanisms of microbial interactions between probiotic microorganisms and Helicobacter pylori
Guzel Sh. Isaeva, R.A. Isaeva
Clinical Microbiology and Antimicrobial Chemotherapy.2023; 25(3): 225. CrossRef
Preparation of branched RG-I-rich pectin from red dragon fruit peel and the characterization of its probiotic properties
Meng-yuan Zhang, Jun Cai
Carbohydrate Polymers.2023; 299: 120144. CrossRef
The potential of paraprobiotics and postbiotics to modulate the immune system: A Review
Jeet P. Mehta, Sonal Ayakar, Rekha S. Singhal
Microbiological Research.2023; 275: 127449. CrossRef
Identification of soybean peptides and their effect on the growth and metabolism of Limosilactobacillus reuteri LR08
Chi Zhang, Shaoqi Xia, Yinxiao Zhang, Shuya Zhu, He Li, Xinqi Liu
Food Chemistry.2022; 369: 130923. CrossRef
Acquisition of Daptomycin Resistance by Enterococcus faecium Confers Collateral Sensitivity to Glycopeptides
Weiliang Zeng, Luozhu Feng, Changrui Qian, Tao Chen, Sipei Wang, Ying Zhang, Xiangkuo Zheng, Lingbo Wang, Shixing Liu, Tieli Zhou, Yao Sun
Frontiers in Microbiology.2022;[Epub] CrossRef
Regulator of RNase E activity modulates the pathogenicity of Salmonella Typhimurium
Jaejin Lee, Eunkyoung Shin, Ji-Hyun Yeom, Jaeyoung Park, Sunwoo Kim, Minho Lee, Kangseok Lee
Microbial Pathogenesis.2022; 165: 105460. CrossRef
Subgingival microbiome in periodontitis and type 2 diabetes mellitus: an exploratory study using metagenomic sequencing
Xianjun Lu, Tingjun Liu, Jiani Zhou, Jia Liu, Zijian Yuan, Lihong Guo
Journal of Periodontal & Implant Science.2022; 52(4): 282. CrossRef
Hidden Agenda of Enterococcus Faecalis Lifestyle Transition: Planktonic To Sessile State
Parvathy Venkateswaran, Priya M Lakshmanan, Sudhiksha Muthukrishnan, Hema Bhagavathi, Sahana Vasudevan, Prasanna Neelakantan, Adline P Solomon
Future Microbiology.2022; 17(13): 1051. CrossRef
Probiotics in the treatment of Helicobacter pylori infection: reality and perspective
Guzel ISAEVA, Regina ISAEVA
Minerva Gastroenterology.2022;[Epub] CrossRef
Algal polysaccharide’s potential to combat respiratory infections caused by Klebsiella pneumoniae and Serratia marcescens biofilms
Jyoti Vishwakarma, Bhumika Waghela, Berness Falcao, Sirisha L. Vavilala
Applied Biochemistry and Biotechnology.2022; 194(2): 671. CrossRef
Phage therapy for refractory periapical periodontitis caused by Enterococcus faecalis in vitro and in vivo
Yingying Xiang, Chunlan Ma, Shuang Yin, Fei Song, Kunhao Qin, Yafang Ding, Xianghong Yang, Pengfei Song, Xiuling Ji, Yunlin Wei
Applied Microbiology and Biotechnology.2022; 106(5-6): 2121. CrossRef
Gram Positive Bacterial Lipoteichoic Acid Role in a Root Canal Infection – A Literature Review
Vinoo Subramaniam Ramachandran, Mensudar Rathakrishnan, Malathy Balaraman Ravindrran, Alargarsamy Venkatesh, Vidhya Shankari Shanmugasundaram, Karpagavinayagam Kumaraguru
Journal of Pure and Applied Microbiology.2021; 15(2): 534. CrossRef
In Vitro Effects of Lactobacillus plantarum LN66 and Antibiotics Used Alone or in Combination on Helicobacter pylori Mature Biofilm
Jianfu Ji, Hong Yang
Microorganisms.2021; 9(2): 424. CrossRef
Effects of Rose Bengal‐ and Methylene Blue‐Mediated Potassium Iodide‐Potentiated Photodynamic Therapy on Enterococcus faecalis: A Comparative Study
Ruijie Li, Lintian Yuan, Weiqian Jia, Man Qin, Yuguang Wang
Lasers in Surgery and Medicine.2021; 53(3): 400. CrossRef
HEMA-induced oxidative stress inhibits NF-κB nuclear translocation and TNF release from LTA- and LPS-stimulated immunocompetent cells
Helmut Schweikl, Margaritha Birke, Marialucia Gallorini, Christine Petzel, Carola Bolay, Claudia Waha, Karl-Anton Hiller, Wolfgang Buchalla
Dental Materials.2021; 37(1): 175. CrossRef
Lactobacillus rhamnosus and Lactobacillus casei Affect Various Stages of Gardnerella Species Biofilm Formation
Yuanhui He, Risu Na, Xiaoxi Niu, Bingbing Xiao, Huixia Yang
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef
Cell-Free Lactobacillus sp Supernatants Modulate Staphylococcus aureus Growth, Adhesion and Invasion to Human Osteoblast (HOB) Cells
Fatma Kalaycı Yüksek, Defne Gümüş, Gül İpek Gündoğan, Mine Anğ Küçüker
Current Microbiology.2021; 78(1): 125. CrossRef
Comparison of solithromycin with erythromycin in Enterococcus faecalis and Enterococcus faecium from China: antibacterial activity, clonality, resistance mechanism, and inhibition of biofilm formation
Yu Wang, Yanpeng Xiong, Zhanwen Wang, Jinxin Zheng, Guangjian Xu, Qiwen Deng, Zewen Wen, Zhijian Yu
The Journal of Antibiotics.2021; 74(2): 143. CrossRef
Regulator of ribonuclease activity modulates the pathogenicity of Vibrio vulnificus
Jaejin Lee, Eunkyoung Shin, Jaeyeong Park, Minho Lee, Kangseok Lee
Journal of Microbiology.2021; 59(12): 1133. CrossRef
Lactobacillus plantarum Lipoteichoic Acids Possess Strain-Specific Regulatory Effects on the Biofilm Formation of Dental Pathogenic Bacteria
Dongwook Lee, Jintaek Im, Dong Hyun Park, Sungho Jeong, Miri Park, Seokmin Yoon, Jaewoong Park, Seung Hyun Han
Frontiers in Microbiology.2021;[Epub] CrossRef
Can Probiotics Emerge as Effective Therapeutic Agents in Apical Periodontitis? A Review
Gaurav Kumar, Sanjay Tewari, John Tagg, Michael Leonidas Chikindas, Igor V Popov, Santosh Kumar Tiwari
Probiotics and Antimicrobial Proteins.2021; 13(2): 299. CrossRef
Lactobacilli as Anti-biofilm Strategy in Oral Infectious Diseases: A Mini-Review
Barbara Giordani, Carola Parolin, Beatrice Vitali
Frontiers in Medical Technology.2021;[Epub] CrossRef
Interplay between Candida albicans and Lactic Acid Bacteria in the Gastrointestinal Tract: Impact on Colonization Resistance, Microbial Carriage, Opportunistic Infection, and Host Immunity
Karen D. Zeise, Robert J. Woods, Gary B. Huffnagle
Clinical Microbiology Reviews.2021;[Epub] CrossRef
Postbiotics-parabiotics: the new horizons in microbial biotherapy and functional foods
Basavaprabhu H. Nataraj, Syed Azmal Ali, Pradip V. Behare, Hariom Yadav
Microbial Cell Factories.2020;[Epub] CrossRef
Vaginal microbiota and the potential of Lactobacillus derivatives in maintaining vaginal health
Wallace Jeng Yang Chee, Shu Yih Chew, Leslie Thian Lung Than
Microbial Cell Factories.2020;[Epub] CrossRef
Enhanced biofilm formation of Streptococcus gordonii with lipoprotein deficiency
Ok‐Jin Park, Solmin Jung, Taehwan Park, A Reum Kim, Dongwook Lee, Hyun Jung Ji, Ho Seong Seo, Cheol‐Heui Yun, Seung Hyun Han
Molecular Oral Microbiology.2020; 35(6): 271. CrossRef
Lactobacillus plantarum lipoteichoic acid disrupts mature Enterococcus faecalis biofilm
A. Reum Kim, Minji Kang, Yeon-Jee Yoo, Cheol-Heui Yun, Hiran Perinpanayagam, Kee-Yeon Kum, Seung Hyun Han
Journal of Microbiology.2020; 58(4): 314. CrossRef
Streptococcus gordonii: Pathogenesis and Host Response to Its Cell Wall Components
Ok-Jin Park, Yeongkag Kwon, Chaeyeon Park, Yoon Ju So, Tae Hwan Park, Sungho Jeong, Jintaek Im, Cheol-Heui Yun, Seung Hyun Han
Microorganisms.2020; 8(12): 1852. CrossRef
Using Probiotics as Supplementation for Helicobacter pylori Antibiotic Therapy
Jianfu Ji, Hong Yang
International Journal of Molecular Sciences.2020; 21(3): 1136. CrossRef
In-vitro effect of vaginal lactobacilli against group B Streptococcus
Giacomo Marziali, Claudio Foschi, Carola Parolin, Beatrice Vitali, Antonella Marangoni
Microbial Pathogenesis.2019; 136: 103692. CrossRef

Article

Larkinella roseus sp. nov., a species of the family Cytophagaceae isolated from beach soil: Jae-Bong Lee , Sumin Hong , Seung-Yeol Lee , Su-Jin Park , Kyeung Il Park , Seok-Gwan Choi , Myung Kyum Kim , Leonid N. Ten , Hee-Young Jung; J. Microbiol. 2018;56(1):30-35. Published online January 4, 2018; DOI: https://doi.org/10.1007/s12275-018-7476-x

853 View
0 Download
4 Crossref

Abstract PDF

The taxonomic position of bacterial strain, designated 15J16- 1T3AT, recovered from a soil sample was established using a polyphasic approach. Phylogenic analysis based on the 16S rRNA gene sequence showed that strain 15J16-1T3AT belonged to the family Cytophagaceae, phylum Bacteroidetes, and was most closely related to ‘Larkinella harenae’ 15J9-9 (95.9% similarity), Larkinella ripae 15J11-11T (95.6%), Larkinella bovis M2TB15T (94.7%), Larkinella arboricola Z0532T (93.9%), and Larkinella insperata LMG 22510T (93.5%). Cells were rod-shaped, Gram-stain-negative, aerobic, and nonmotile. The isolate grew on NA, R2A, TSA, but not on LB agar. The strain was able to grow at temperature range from 10°C to 30°C with an optimum at 25°C and pH 6–8. Menaquinone MK-7 was the predominant respiratory quinone. The major cellular fatty acids comprised C16:1 ω5c (48.6%) and C15:0 iso (24.1%). Phosphatidylethanolamine, phosphatidylserine, and an unidentified lipid were the major polar lipids. The G + C content of the genomic DNA was 49.5 mol%. Strain 15J16-1T3AT could be distinguished from its closest phylogenetic neighbors based on its phenotypic, genotypic, and chemotaxonomic features. Therefore, the isolate is considered to represent a novel species in the genus Larkinella, for which the name Larkinella roseus sp. nov. is proposed. The type strain is 15J16-1T3AT (= KCTC 52004T = JCM 31991T).

Citations

Citations to this article as recorded by

Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
Yuna Park, Leonid N. Ten, Young Koung Lee, Hee‑Young Jung, Myung Kyum Kim
Archives of Microbiology.2022;[Epub] CrossRef
Larkinella punicea sp. nov., isolated from manganese mine soil
Zijie Zhou, Lin Zhu, Yixuan Dong, Xian Xia, Shijuan Wu, Gejiao Wang
Archives of Microbiology.2020; 202(9): 2517. CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1411. CrossRef
Hymenobacter segetis sp. nov., isolated from soil
Leonid N. Ten, Soo Jeong Lim, Byung-Oh Kim, In-Kyu Kang, Hee-Young Jung
Archives of Microbiology.2018; 200(8): 1167. CrossRef

Article

Spirosoma migulaei sp. nov., isolated from soil: Joseph Okiria , Leonid N. Ten , Su-Jin Park , Seung-Yeol Lee , Dong Hoon Lee , In-Kyu Kang , Dae Sung Lee , Hee-Young Jung; J. Microbiol. 2017;55(12):927-932. Published online December 7, 2017; DOI: https://doi.org/10.1007/s12275-017-7377-4

861 View
0 Download
8 Crossref

Abstract PDF

A Gram-stain-negative, non-motile, non-spore-forming, rodshaped, aerobic bacterium, designated 15J9-8T, was isolated from soil on Jeju Island, Republic of Korea. The isolate was able to grow between 10 and 30°C, pH 6.5–8.5, and in presence of 0–1% (w/v) NaCl. The results of comparative 16S rRNA gene sequence analysis indicated that strain 15J9-8T represented a member of the family Cytophagaceae, phylum Bacteroidetes, and was most closely related to Spirosoma aerophilum 5516J-17T (96.1% similarity), Spirosoma pulveris JSH5-14T (95.6%), and Spirosoma linguale DSM 74T (95.2%). The G + C content of the genomic DNA of the isolate was 47.0 mol%. Strain 15J9-8T contained summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, and iso-C15:0 as the major fatty acids, phosphatidylethanolamine and an unidentified aminophospholipid as the main polar lipids, and menaquinone MK-7 as the predominant respiratory quinone. On the basis of its phenotypic and genotypic properties, and phylogenetic distinctiveness, strain 15J9-8T should be classified as a representative of a novel species of the genus Spirosoma, for which the name Spirosoma migulaei sp. nov. is proposed. The type strain is 15J9-8T (=KCTC 52028T =JCM 31996T).

Citations

Citations to this article as recorded by

Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
Scientific Reports.2023;[Epub] CrossRef
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Fibrivirga algicola gen. nov., sp. nov., an algicidal bacterium isolated from a freshwater river
Sanghwa Park, Ja Young Cho, Dong-Hyun Jung, Seok Won Jang, Jung Hye Eom, Seung Won Nam, Dae Ryul Kwon, Jaewon Ryu, Keug Tae Kim
Antonie van Leeuwenhoek.2022; 115(7): 899. CrossRef
Spirosoma telluris sp. nov. and Spirosoma arboris sp. nov. isolated from soil and tree bark, respectively
Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5355. CrossRef
Complete Genome Sequence of Spirosoma sp. Strain KCTC 42546, Isolated from a Reservoir in South Korea
Pokchut Kusolkumbot, Song-Gun Kim, Chatrudee Suwannachart, Kenneth M. Stedman
Microbiology Resource Announcements.2020;[Epub] CrossRef
Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
Antonie van Leeuwenhoek.2019; 112(10): 1523. CrossRef
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology .2019;[Epub] CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1411. CrossRef

Article

Gly184 of the Escherichia coli cAMP receptor protein provides optimal context for both DNA binding and RNA polymerase interaction: Matt N. Hicks , Sanjiva Gunasekara , Jose Serate , Jin Park , Pegah Mosharaf , Yue Zhou , Jin-Won Lee , Hwan Youn; J. Microbiol. 2017;55(10):816-822. Published online September 28, 2017; DOI: https://doi.org/10.1007/s12275-017-7266-x

857 View
0 Download
3 Crossref

Abstract PDF

The Escherichia coli cAMP receptor protein (CRP) utilizes the helix-turn-helix motif for DNA binding. The CRP’s recognition helix, termed F-helix, includes a stretch of six amino acids (Arg180, Glu181, Thr182, Val183, Gly184, and Arg185) for direct DNA contacts. Arg180, Glu181 and Arg185 are known as important residues for DNA binding and specificity, but little has been studied for the other residues. Here we show that Gly184 is another F-helix residue critical for the transcriptional activation function of CRP. First, glycine was repeatedly selected at CRP position 184 for its unique ability to provide wild type-level transcriptional activation activity. To dissect the glycine requirement, wild type CRP and mutants G184A, G184F, G184S, and G184Y were purified and their in vitro DNA-binding activity was measured. G184A and G184F displayed reduced DNA binding, which may explain their low transcriptional activation activity. However, G184S and G184Y displayed apparently normal DNA affinity. Therefore, an additional factor is needed to account for the diminished transcriptional activation function in G184S and G184Y, and the best explanation is perturbations in their interaction with RNA polymerase. The fact that glycine is the smallest amino acid could not fully warrant its suitability, as shown in this study. We hypothesize that Gly184 fulfills the dual functions of DNA binding and RNA polymerase interaction by conferring conformational flexibility to the F-helix.

Citations

Citations to this article as recorded by

cAMP-independent DNA binding of the CRP family protein DdrI from Deinococcus radiodurans
Yudong Wang, Jing Hu, Xufan Gao, Yuchen Cao, Shumai Ye, Cheng Chen, Liangyan Wang, Hong Xu, Miao Guo, Dong Zhang, Ruhong Zhou, Yuejin Hua, Ye Zhao, Paul Babitzke
mBio.2024;[Epub] CrossRef
Unexpected Requirement of Small Amino Acids at Position 183 for DNA Binding in the Escherichia coli cAMP Receptor Protein
Marcus Carranza, Amanda Rea, Daisy Pacheco, Christian Montiel, Jin Park, Hwan Youn
Journal of Microbiology.2024; 62(10): 871. CrossRef
cAMP Activation of the cAMP Receptor Protein, a Model Bacterial Transcription Factor
Hwan Youn, Marcus Carranza
Journal of Microbiology.2023; 61(3): 277. CrossRef

Article

Spirosoma luteolum sp. nov. isolated from water: Jae-Jin Lee , Su-Jin Park , Yeon-Hee Lee , Seung-Yeol Lee , Sangkyu Park , Young-Je Cho , Myung Kyum Kim , Leonid N. Ten , Hee-Young Jung; J. Microbiol. 2017;55(4):247-252. Published online March 13, 2017; DOI: https://doi.org/10.1007/s12275-017-6455-y

909 View
0 Download
18 Crossref

Abstract PDF

A novel Gram-negative and rod-shaped bacterial strain, de-signated as 16F6ET, was isolated from a water sample. Cells were yellowish in color and catalase- and oxidase-positive. The strain grew at 10–37°C (optimum at 25°C) but not at 4 and 42°C, and pH 5–7 (optimum at pH 7). It showed mod-erate resistance to gamma-ray irradiation. Comparative phy-logenetic analysis showed that strain 16F6ET belonged to the family Cytophagaceae of the class Cytophagia. Furthermore, this isolate showed relatively low 16S rRNA gene sequence similarities (90.7–93.1%) to the members of the genus Spiro-soma. The major fatty acids were summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, C16:0 N alcohol, and C16:0. The polar lipid profile indicated presence of phosphatidylethanolamine, unknown aminophospholipids, an unknown amino lipid, unknown phospholipids, and unknown polar lipids. The pre-dominant isoprenoid quinone was MK-7. The genomic DNA G+C content of strain 16F6ET was 56.5 mol%. Phenotypic, phylogenetic, and chemotaxonomic properties indicated that isolate 16F6ET represents a novel species within the genus Spirosoma, for which the name Spirosoma luteolum sp. nov. is proposed. The type strain is 16F6ET (=KCTC 52199T =JCM 31411T).

Citations

Citations to this article as recorded by

Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
Scientific Reports.2023;[Epub] CrossRef
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Theoretical design of new organic compounds based on diketopyrrolopyrrole and phenyl for organic bulk heterojunction solar cell applications: DFT and TD-DFT study
M. Raftani, T. Abram, A. Azaid, R. Kacimi, M.N. Bennani, M. Bouachrine
Materials Today: Proceedings.2021; 45: 7334. CrossRef
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology .2019;[Epub] CrossRef
Spirosoma terrae sp. nov., Isolated from Soil from Jeju Island, Korea
Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, In-Kyu Kang, Myung Kyum Kim, Hee-Young Jung
Current Microbiology.2018; 75(4): 492. CrossRef
Spirosoma harenae sp. nov., a Bacterium Isolated from a Sandy Beach
Leonid N. Ten, Nabil Elderiny, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, Myung Kyum Kim, Hee-Young Jung
Current Microbiology.2018; 75(2): 179. CrossRef
Spirosoma jeollabukense sp. nov., isolated from soil
Weilan Li, Leonid N. Ten, Seung-Yeol Lee, Dong Hoon Lee, Hee-Young Jung
Archives of Microbiology.2018; 200(3): 431. CrossRef
Spirosoma humi sp. nov., Isolated from Soil in South Korea
Li Weilan, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Leonid N. Ten, Hee-Young Jung
Current Microbiology.2018; 75(3): 328. CrossRef
Spirosoma horti sp. nov., isolated from apple orchard soil
Weilan Li, Leonid N. Ten, Seung-Yeol Lee, In-Kyu Kang, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology.2018; 68(3): 930. CrossRef
Spirosoma agri sp. nov., Isolated from Apple Orchard Soil
Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
Current Microbiology.2018; 75(6): 694. CrossRef
Spirosoma pomorum sp. nov., isolated from apple orchard soil
Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
Journal of Microbiology.2018; 56(2): 90. CrossRef
Spirosoma metallilatum sp. nov., isolated from an automotive air conditioning system
Dong-Uk Kim, Hyosun Lee, Suyeon Lee, Sooyeon Park, Jung-Hoon Yoon, Jong-Ok Ka
International Journal of Systematic and Evolutionary Microbiology .2018; 68(2): 523. CrossRef
Spirosoma migulaei sp. nov., isolated from soil
Joseph Okiria, Leonid N. Ten, Su-Jin Park, Seung-Yeol Lee, Dong Hoon Lee, In-Kyu Kang, Dae Sung Lee, Hee-Young Jung
Journal of Microbiology.2017; 55(12): 927. CrossRef
Spirosoma litoris sp. nov., a bacterium isolated from beach soil
Joseph Okiria, Leonid N. Ten, Jae-Jin Lee, Seung-Yeol Lee, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 4986. CrossRef
Spirosoma flavus sp. nov., a novel bacterium from soil of Jeju Island
Nabil Elderiny, Seung-Yeol Lee, Sangkyu Park, In-Kyu Kang, Myung Kyum Kim, Dae Sung Lee, Leonid N. Ten, Hee-Young Jung
Journal of Microbiology.2017; 55(11): 850. CrossRef
Spirosoma koreense sp. nov., a species of the family Cytophagaceae isolated from beach soil
Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, In-Kyu Kang, Dae Sung Lee, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 5198. CrossRef
Spirosoma daeguensis sp. nov., isolated from beach soil
Nabil Elderiny, Leonid N. Ten, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
Journal of Microbiology.2017; 55(9): 678. CrossRef
List of novel names and novel combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2017; 67(7): 2075. CrossRef

Article

Hymenobacter daeguensis sp. nov. isolated from river water: Leonid N. Ten , Yeon-Hee Lee , Jae-Jin Lee , Su-Jin Park , Seung-Yeol Lee , Sangkyu Park , Dae Sung Lee , In-Kyu Kang , Hee-Young Jung; J. Microbiol. 2017;55(4):253-259. Published online January 26, 2017; DOI: https://doi.org/10.1007/s12275-017-6524-2

799 View
1 Download
11 Crossref

Abstract PDF

A Gram-stain-negative, non-motile, non-spore-forming, rod- shaped, aerobic bacterial strain, designated 16F3Y-2T, was isolated from the Han River, South Korea, and was charac-terized taxonomically using a polyphasic approach. Compa-rative 16S rRNA gene sequence analysis showed that strain 16F3Y-2T belonged to the family Cytophagaceae in the phy-lum Bacteroidetes and was most closely related to ‘Hymeno-bacter terrae’ DG7A (98.01%), H. soli PB17T (97.26%), H. glaciei VUG-A130T (96.78%), H. antarcticus VUG-A42aaT (96.72%), H. ruber PB156T (96.61%), and H. saemangeumensis GSR0100T (95.77%). The G+C content of the genomic DNA of strain 16F3Y-2T was 62.9 mol%. The isolate contained MK-7 as the predominant respiratory quinone, and summed fea-ture 3 (C16:1 ω7c/C16:1 ω6c; 35.5%), C15:0 iso (16.9%), C16:1 ω5c (10.9%), and C15:0 anteiso (9.9%) as major fatty acids. The ma-jor polar lipid was phosphatidylethanolamine. Phenotypic and chemotaxonomic data supported the affiliation of strain 16F3Y-2T with the genus Hymenobacter. However, strain 16F3Y-2T exhibited relatively low levels of DNA-DNA related-ness with 'H. terrae' KCTC 32554 (44.1%) and H. soli KCTC 12607T (24.3%), clearly indicating that the isolate constitutes a new genospecies. Strain 16F3Y-2T could be differentiated from its phylogenetic neighbors on the basis of several phe-notypic, genotypic, and chemotaxonomic features. Therefore, strain 16F3Y-2T represents a novel species in the genus Hy-menobacter, for which the name Hymenobacter daeguensis sp. nov. is proposed. The type strain is 16F3Y-2T (=KCTC 52537T =JCM 31654T).

Citations

Citations to this article as recorded by

Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Description of Hymenobacter sediminicola sp. nov., isolated from contaminated sediment
Tingting Ren, Chengxiao Zhang, Chun-Zhi Jin, Feng-Jie Jin, Taihua Li, Hee-Mock Oh, Hyung-Gwan Lee, Long Jin
Antonie van Leeuwenhoek.2023; 116(8): 817. CrossRef
Hymenobacter pomorum sp. nov., Isolated from Apple Orchard Soil
Leonid N. Ten, Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
Current Microbiology.2019; 76(1): 117. CrossRef
Hymenobacter jeollabukensis sp. nov., isolated from soil
Leonid N. Ten, Young Eun Han, Kyeung Il Park, In-Kyu Kang, Jeung-Sul Han, Hee-Young Jung
Journal of Microbiology.2018; 56(7): 500. CrossRef
Hymenobacter pedocola sp. nov., a novel bacterium isolated from soil
Soo-Jeong Lim, Leonid N. Ten, Byung-Oh Kim, In-Kyu Kang, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology .2018; 68(7): 2242. CrossRef
Hymenobacter rufus sp. nov., a bacterium isolated from soil
Jeong-Eun Ohn, Leonid N. Ten, Byung-Oh Kim, Young-Je Cho, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology.2018; 68(9): 2983. CrossRef
Description of Hymenobacter daejeonensis sp. nov., isolated from grass soil, based on multilocus sequence analysis of the 16S rRNA gene, gyrB and tuf genes
Long Jin, Xuewen Wu, So-Ra Ko, Feng-Jie Jin, Taihua Li, Chi-Yong Ahn, Hee-Mock Oh, Hyung-Gwan Lee
Antonie van Leeuwenhoek.2018; 111(12): 2283. CrossRef
Hymenobacter segetis sp. nov., isolated from soil
Leonid N. Ten, Soo Jeong Lim, Byung-Oh Kim, In-Kyu Kang, Hee-Young Jung
Archives of Microbiology.2018; 200(8): 1167. CrossRef
Hymenobacter agri sp. nov., a novel bacterium isolated from soil
Jigon Han, Leonid N. Ten, Dong Hoon Lee, In-Kyu Kang, Hee-Young Jung
Antonie van Leeuwenhoek.2018; 111(10): 1815. CrossRef
Hymenobacter terrigena sp. nov., isolated from soil
Jeong-Eun Ohn, Leonid N. Ten, Kyeung Il Park, Byung-Oh Kim, Jeung-Sul Han, Hee-Young Jung
Journal of Microbiology.2018; 56(4): 231. CrossRef
List of novel names and novel combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2017; 67(7): 2075. CrossRef

Article

Deinococcus sedimenti sp. nov. isolated from river sediment: Jae-Jin Lee , Yeon-Hee Lee , Su-Jin Park , Sangyong Lim , Sun-Wook Jeong , Seung-Yeol Lee , Sangkyu Park , Hyo-Won Choi , Myung Kyum Kim , Hee-Young Jung; J. Microbiol. 2016;54(12):802-808. Published online November 26, 2016; DOI: https://doi.org/10.1007/s12275-016-6361-8

808 View
0 Download
6 Crossref

Abstract PDF

A novel Gram-positive, oval-shaped, non-motile bacterium designated strain 16F1LT was isolated from sediment collected from the Han River in Seoul, Republic of Korea. Based on the 16S rRNA gene sequence (1,448 bp), this strain was identified as a member of the genus Deinococcus that belongs to the class Deinococci. Similarities in the 16S rRNA gene sequence were shown with Deinococcus daejeonensis MJ27T (99.0%), D. grandis DSM 3963T (98.1%), D. radiotolerans C1T (97.5%), and D. caeni Ho-08T (97.2%). Strain 16F1LT was classified as a different genomic species from closely related Deinococcus members, based on less than 70% DNA-DNA relatedness. Genomic DNA G+C content of strain 16F1LT was 67.2 mol%. Strain 16F1LT was found to grow at temperatures of 10–37°C (optimum 25°C) and pH 7–8 (optimum pH 7) on R2A medium, and was catalase-positive and oxidase-negative. Strain 16F1LT showed resistance to gamma radiation (D10 > 2 kGy). In addition, this strain had the following chemotaxonomic characteristics: the major fatty acids were C15:1 ω6c and C16:1 ω7c; the polar lipid profile contained phosphoglycolipids, unknown aminophospholipids, an unknown aminoglycolipid, unknown aminolipids, an unknown glycolipid, an unknown phospholipid, and an unknown polar lipid; the major quinone was MK-8. Phylogenetic, genotypic, phenotypic, and chemotaxonomic characteristics indicated that strain 16F1LT represents a novel species within the genus Deinococcus, for which the name Deinococcus sedimenti sp. nov. is proposed. The type strain is 16F1LT (=KCTC 33796T =JCM 31405T).

Citations

Citations to this article as recorded by

Draft genome sequence of Deinococcus sp. ME38 isolated from sediment of the Esmeralda Lake of the Parque Nacional Lagunas De Montebello
Alejandra Osorio-González, Betsy Anaid Peña-Ocaña, Nancy Abril Martínez-López, José Humberto Castañón-González, Roberto Marín-Paredes, Ricardo Jasso-Chávez, Víctor Manuel Ruíz-Valdiviezo, Vanja Klepac-Ceraj
Microbiology Resource Announcements.2025;[Epub] CrossRef
Insights into the radiation and oxidative stress mechanisms in genus Deinococcus
Nirjara Singhvi, Chandni Talwar, Shekhar Nagar, Helianthous Verma, Jasvinder Kaur, Nitish Kumar Mahato, Nabeel Ahmad, Krishnendu Mondal, Vipin Gupta, Rup Lal
Computational Biology and Chemistry.2024; 112: 108161. CrossRef
Deinococcus fonticola sp. nov., isolated from a radioactive thermal spring in Hungary
Judit Makk, Nóra Tünde Enyedi, Erika Tóth, Dóra Anda, Attila Szabó, Tamás Felföldi, Peter Schumann, Judit Mádl-Szőnyi, Andrea K. Borsodi
International Journal of Systematic and Evolutionary Microbiology.2019; 69(6): 1724. CrossRef
Deinococcus arcticus sp. nov., isolated from Silene acaulis rhizosphere soil of the Arctic tundra
Xin-Peng Wang, Chang-Ming Li, Yong Yu, Hui-Rong Li, Zong-Jun Du, Da-shuai Mu
International Journal of Systematic and Evolutionary Microbiology .2019; 69(11): 3437. CrossRef
Removal of Pb(II) by Pellicle-Like Biofilm-Producing Methylobacterium hispanicum EM2 Strain from Aqueous Media
Sun-Wook Jeong, Hyo Kim, Jung Yang, Yong Choi
Water.2019; 11(10): 2081. CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M Garrity
International Journal of Systematic and Evolutionary Microbiology .2017; 67(5): 1095. CrossRef

Article

Deinococcus seoulensis sp. nov., a bacterium isolated from sediment at Han River in Seoul, Republic of Korea: Jae-Jin Lee , Yeon-Hee Lee , Su-Jin Park , Sangyong Lim , Sun-Wook Jeong , Seung-Yeol Lee , Young-Je Cho , Myung Kyum Kim , Hee-Young Jung; J. Microbiol. 2016;54(8):537-542. Published online August 2, 2016; DOI: https://doi.org/10.1007/s12275-016-6253-y

880 View
0 Download
11 Crossref

Abstract PDF

Strain 16F1ET was isolated from a 3-kGy-irradiated sediment sample collected at Han River in Seoul, Republic of Korea. Cells of this strain were observed to be Gram-positive, pililike structure, and short rod shape, and colonies were red in color. The strain showed the highest degree of 16S rRNA gene sequence similarity to Deinococcus aquaticus PB314T (98.8%), Deinococcus depolymerans TDMA-24T (98.1%), Deinococcus caeni Ho-08T (98.0%), and Deinococcus grandis DSM 3963T (97.0%). 16S rRNA gene sequence analysis identified this strain as a member of the genus Deinococcus (Family: Deinococcaceae). The genomic DNA G+C content of strain 16F1ET was 66.9 mol%. The low levels of DNA-DNA hybridization (< 56.2%) with the species mentioned above identified strain 16F1ET as a novel Deinococcus species. Its oxidase and catalase activities as well as the production of acid from glucose were positive. Growth of the strain was observed at 10–37°C (optimum: 20–30°C) and pH 4–10 (optimum: pH 7–8). The cells tolerated less than 5% NaCl and had low resistance to gamma radiation (D10 < 4 kGy). Strain 16F1ET possessed the following chemotaxonomic characteristics: C16:0, C15:1 ω6c, and C16:1 ω7c as the major fatty acids; phosphoglycolipid as the predominant polar lipid; and menaquinone-8 as the predominant respiratory isoprenoid quinone. Based on the polyphasic evidence, as well as the phylogenetic, genotypic, phenotypic, and chemotaxonomic characterization results, strain 16F1ET (=KCTC 33793T =JCM 31404T) is proposed to represent the type strain of a novel species, Deinococcus seoulensis sp. nov.

Citations

Citations to this article as recorded by

Comprehensive phylogenomic analyses support the reclassification of several species belonging to the Deinococcus genus
Khaoula Bouznada, Rafika Saker, Hadj Ahmed Belaouni, Atika Meklat
Biologia.2026;[Epub] CrossRef
Insights into the radiation and oxidative stress mechanisms in genus Deinococcus
Nirjara Singhvi, Chandni Talwar, Shekhar Nagar, Helianthous Verma, Jasvinder Kaur, Nitish Kumar Mahato, Nabeel Ahmad, Krishnendu Mondal, Vipin Gupta, Rup Lal
Computational Biology and Chemistry.2024; 112: 108161. CrossRef
Complete Genome Sequence of Deinococcus aquaticus Type Strain PB314, a Non-Extremophile Representative of the Genus Deinococcus
Chad Albert, Jonathan Hill, Leilani Boren, Stacy Scholz-Ng, Nahid Fatema, Ryan Grosso, Erica Soboslay, James Tuohy, David A. Baltrus
Microbiology Resource Announcements.2023;[Epub] CrossRef
Deinococcus betulae sp. nov. and Deinococcus arboris sp. nov., novel bacteria isolated from bark of birch tree (Betula platyphylla)
Seokhyeon Bae, Heeyoung Kang, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune
Ji Hee Lee, Jong-Hyun Jung, Min-Kyu Kim, Sangyong Lim
Current Microbiology.2022;[Epub] CrossRef
Microbial Monitoring in the EDEN ISS Greenhouse, a Mobile Test Facility in Antarctica
Jana Fahrion, Carina Fink, Paul Zabel, Daniel Schubert, Mohamed Mysara, Rob Van Houdt, Bernhard Eikmanns, Kristina Beblo-Vranesevic, Petra Rettberg
Frontiers in Microbiology.2020;[Epub] CrossRef
Deinococcus arcticus sp. nov., isolated from Silene acaulis rhizosphere soil of the Arctic tundra
Xin-Peng Wang, Chang-Ming Li, Yong Yu, Hui-Rong Li, Zong-Jun Du, Da-shuai Mu
International Journal of Systematic and Evolutionary Microbiology .2019; 69(11): 3437. CrossRef
Specific Members of the Gut Microbiota are Reliable Biomarkers of Irradiation Intensity and Lethality in Large Animal Models of Human Health
Franck Carbonero, Alba Mayta, Mathilde Bolea, Jiang-Zhou Yu, Matt Lindeblad, Alex Lyubimov, Flavia Neri, Erzsebet Szilagyi, Brett Smith, Lisa Halliday, Amelia Bartholomew
Radiation Research.2018; 191(1): 107. CrossRef
Deinococcus rufus sp. nov., isolated from soil near an iron factory
Qian Wang, Yali Song, Lina Choi, Hongyu Liu, Gejiao Wang, Mingshun Li
International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1622. CrossRef
Deinococcus knuensis sp. nov., a bacterium isolated from river water
Jae-Jin Lee, Yeon-Hee Lee, Su-Jin Park, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
Antonie van Leeuwenhoek.2017; 110(3): 407. CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2016; 66(11): 4299. CrossRef

Research Support, Non-U.S. Gov't

Molecular characterization of mammalian-adapted Korean-type avian H9N2 virus and evaluation of its virulence in mice: Kuk Jin Park , Min-Suk Song , Eun-Ha Kim , Hyeok-il Kwon , Yun Hee Baek , Eun-hye Choi , Su-Jin Park , Se Mi Kim , Young-il Kim , Won-Suk Choi , Dae-Won Yoo , Chul-Joong Kim , Young Ki Choi; J. Microbiol. 2015;53(8):570-577. Published online July 31, 2015; DOI: https://doi.org/10.1007/s12275-015-5329-4

905 View
0 Download
15 Crossref

Abstract PDF

Avian influenza A virus (AIV) is commonly isolated from domestic poultry and wild migratory birds, and the H9N2 subtype is the most prevalent and the major cause of severe disease in poultry in Korea. In addition to the veterinary concerns regarding the H9N2 subtype, it is also considered to be the next potential human pandemic strain due to its rapid evolution and interspecies transmission. In this study, we utilize serial lung-to-lung passage of a low pathogenic avian influenza virus (LPAI) H9N2 (A/Ck/Korea/163/04, WT163) (Y439-lineage) in mice to increase pathogenicity and investigate the potential virulence marker. Mouse-adapted H9N2 virus obtained high virulence (100% mortality) in mice after 98 serial passages. Sequence results show that the mouse adaptation (ma163) possesses several mutations within seven gene segments (PB2, PA, HA, NP, NA, M, and NS) relative to the wild-type strain. The HA gene showed the most mutations (at least 11) with one resulting in the loss of an N-glycosylation site (at amino acid 166). Moreover, reverse genetic studies established that an E627K substitution in PB2 and the loss of the N-glycosylation site in the HA protein (aa166) are critical virulence markers in the mouse-adapted H9N2 virus. Thus, these results add to the increasing body of mutational analysis data defining the function of the viral polymerase and HA genes and their roles in mammalian host adaptation. To our knowledge, this is first report of the generation of a mammalian-adapted Korea H9N2 virus (Y493-lineages). Therefore, this study offers valuable insights into the molecular evolution of the LPAI Korean H9N2 in a new host and adds to the current knowledge of the molecular markers associated with increased virulence.

Citations

Citations to this article as recorded by

Genetic Characterization of Kazakhstan Isolates: Avian Influenza H9N2 Viruses Demonstrate Their Potential to Infect Mammals
Barshagul Baikara, Kobey Karamendin, Yermukhammet Kassymbekov, Klara Daulbayeva, Temirlan Sabyrzhan, Sardor Nuralibekov, Yelizaveta Khan, Nurlan Sandybayev, Sasan Fereidouni, Aidyn Kydyrmanov
Viruses.2025; 17(5): 685. CrossRef
An Influenza A virus can evolve to use human ANP32E through altering polymerase dimerization
Carol M. Sheppard, Daniel H. Goldhill, Olivia C. Swann, Ecco Staller, Rebecca Penn, Olivia K. Platt, Ksenia Sukhova, Laury Baillon, Rebecca Frise, Thomas P. Peacock, Ervin Fodor, Wendy S. Barclay
Nature Communications.2023;[Epub] CrossRef
Current situation and control strategies of H9N2 avian influenza in South Korea
Mingeun Sagong, Kwang-Nyeong Lee, Eun-Kyoung Lee, Hyunmi Kang, Young Ki Choi, Youn-Jeong Lee
Journal of Veterinary Science.2023;[Epub] CrossRef
Antigenic Evolution Characteristics and Immunological Evaluation of H9N2 Avian Influenza Viruses from 1994–2019 in China
Qingzheng Liu, Lingcai Zhao, Yanna Guo, Yongzhen Zhao, Yingfei Li, Na Chen, Yuanlu Lu, Mengqi Yu, Lulu Deng, Jihui Ping
Viruses.2022; 14(4): 726. CrossRef
Molecular epidemiology and pathogenicity of H5N1 and H9N2 avian influenza viruses in clinically affected chickens on farms in Bangladesh
Ripatun Nahar Ripa, Joshua E. Sealy, Jayna Raghwani, Tridip Das, Himel Barua, Md. Masuduzzaman, A. K. M. Saifuddin, Md. Reajul Huq, Mohammad Inkeyas Uddin, Munir Iqbal, Ian Brown, Nicola S. Lewis, Dirk Pfeiffer, Guillaume Fournie, Paritosh Kumar Biswas
Emerging Microbes & Infections.2021; 10(1): 2223. CrossRef
Mouse adaptation of the H9N2 avian influenza virus causes the downregulation of genes related to innate immune responses and ubiquitin-mediated proteolysis in mice
Jing Guo, Xinxin Gao, Baotao Liu, Yubao Li, Wenqiang Liu, Jianbiao Lu, Cheng Liu, Rui Xue, Xuyong Li
Medical Microbiology and Immunology.2020; 209(2): 151. CrossRef
H9 Influenza Viruses: An Emerging Challenge
Silvia Carnaccini, Daniel R. Perez
Cold Spring Harbor Perspectives in Medicine.2020; 10(6): a038588. CrossRef
Adaptive amino acid substitutions enable transmission of an H9N2 avian influenza virus in guinea pigs
Liu Lina, Chen Saijuan, Wang Chengyu, Lu Yuefeng, Dong Shishan, Chen Ligong, Guo Kangkang, Guo Zhendong, Li Jiakai, Zhang Jianhui, Luo Qingping, Zhang Wenting, Shang Yu, Wang Honglin, Zhang Tengfei, Wen Guoyuan, Zhu Jiping, Zhang Chunmao, Jin Meilin, Gao
Scientific Reports.2019;[Epub] CrossRef
A PB1-K577E Mutation in H9N2 Influenza Virus Increases Polymerase Activity and Pathogenicity in Mice
Haruhiko Kamiki, Hiromichi Matsugo, Tomoya Kobayashi, Hiroho Ishida, Akiko Takenaka-Uema, Shin Murakami, Taisuke Horimoto
Viruses.2018; 10(11): 653. CrossRef
Genetics and biological property analysis of Korea lineage of influenza A H9N2 viruses
Min Kang, Hyung-Kwan Jang
Veterinary Microbiology.2017; 204: 96. CrossRef
The significance of avian influenza virus mouse-adaptation and its application in characterizing the efficacy of new vaccines and therapeutic agents
Won-Suk Choi, Khristine Kaith S. Lloren, Yun Hee Baek, Min-Suk Song
Clinical and Experimental Vaccine Research.2017; 6(2): 83. CrossRef
Rapid acquisition of polymorphic virulence markers during adaptation of highly pathogenic avian influenza H5N8 virus in the mouse
Won-Suk Choi, Yun Hee Baek, Jin Jung Kwon, Ju Hwan Jeong, Su-Jin Park, Young-il Kim, Sun-Woo Yoon, Jungwon Hwang, Myung Hee Kim, Chul-Joong Kim, Richard J. Webby, Young Ki Choi, Min-Suk Song
Scientific Reports.2017;[Epub] CrossRef
Vaccine Efficacy of Inactivated, Chimeric Hemagglutinin H9/H5N2 Avian Influenza Virus and Its Suitability for the Marker Vaccine Strategy
Se Mi Kim, Young-Il Kim, Su-Jin Park, Eun-Ha Kim, Hyeok-il Kwon, Young-Jae Si, In-Won Lee, Min-Suk Song, Young Ki Choi, Jae U. Jung
Journal of Virology.2017;[Epub] CrossRef
Prevalence and diversity of H9N2 avian influenza in chickens of Northern Vietnam, 2014
Duong Mai Thuy, Thomas P. Peacock, Vu Thi Ngoc Bich, Thomas Fabrizio, Dang Nguyen Hoang, Nguyen Dang Tho, Nguyen Thi Diep, Minh Nguyen, Le Nguyen Minh Hoa, Hau Thi Thu Trang, Marc Choisy, Ken Inui, Scott Newman, Nguyen vu Trung, Rogier van Doorn, Thanh Lo
Infection, Genetics and Evolution.2016; 44: 530. CrossRef
PB2 subunit of avian influenza virus subtype H9N2: a pandemic risk factor
Hanna Sediri, Swantje Thiele, Folker Schwalm, Gülsah Gabriel, Hans-Dieter Klenk
Journal of General Virology.2016; 97(1): 39. CrossRef

Research Support, Non-U.S. Gov't

Anti-influenza Effect of Cordyceps militaris through Immunomodulation in a DBA/2 Mouse Model: Hwan Hee Lee , Heejin Park , Gi-Ho Sung , Kanghyo Lee , Taeho Lee , Ilseob Lee , Man-seong Park , Yong Woo Jung , Yu Su Shin , Hyojeung Kang , Hyosun Cho; J. Microbiol. 2014;52(8):696-701. Published online July 18, 2014; DOI: https://doi.org/10.1007/s12275-014-4300-0

959 View
1 Download
27 Crossref

Abstract PDF

The immune-modulatory as well as anti-influenza effects of Cordyceps extract were investigated using a DBA/2 mouse model. Three different concentrations of Cordyceps extract, red ginseng extract, or drinking water were orally administered to mice for seven days, and then the mice were intranasally infected with 2009 pandemic influenza H1N1 virus. Body weight changes and survival rate were measured daily post-infection. Plasma IL-12, TNF-α, and the frequency of natural killer (NK) cells were measured on day 4 post-infection. The DBA/2 strain was highly susceptible to H1N1 virus infection. We also found that Cordyceps extract had an antiinfluenza effect that was associated with stable body weight and reduced mortality. The anti-viral effect of Cordyceps extract on influenza infection was mediated presumably by increased IL-12 expression and greater number of NK cells. However, high TNF-α expression after infection of H1N1 virus in mice not receiving treatment with Cordyceps extract suggested a two-sided effect of the extract on host immune regulation.

Citations

Citations to this article as recorded by

Quest for Anti-SARS-CoV-2 antiviral therapeutics: in-silico and in-vitro analysis of edible mushroom- Cordyceps militaris
Pradeep Gandhale, Rupesh Chikhale, Pukar Khanal, Vashkar Biswa, Raju Ali, Mohd Shahnawaz Khan, Nilambari Gurav, Muniappan Ayyanar, Sandeep Das, Shailendra Gurav
Journal of Ayurveda and Integrative Medicine.2024; 15(3): 100979. CrossRef
Chitin Synthases in Cordyceps militaris: Genome-Wide Gene Identification, Evolutionary Insights, and Life Cycle Transcript Profiling
Shoumian Li, Huihui Ren, Jie Zhang, Shangpai Gao, Zixuan Chen, Guojie Li, Jinghua Tian, Junling Wang, Ming Li, Xiao Li, Caihong Dong
Horticulturae.2024; 10(5): 494. CrossRef
Early Trends to Show the Efficacy of Cordyceps militaris in Mild to Moderate COVID Inflammation
Siddharth Dubhashi, Sagar Sinha, Sankalp Dwivedi, Jaishree Ghanekar, Sameer Kadam, Parineeta Samant, Vibha Datta, Sarman Singh, Irshad H Chaudry, Padma Gurmet, Harshawardhan Kelkar, Rakesh Mishra, Sagar Galwankar, Amit Agrawal
Cureus.2023;[Epub] CrossRef
Chitinase Is Involved in the Fruiting Body Development of Medicinal Fungus Cordyceps militaris
Zi-Juan Zhang, Yuan-Yuan Yin, Yao Cui, Yue-Xuan Zhang, Bi-Yang Liu, You-Chu Ma, Yong-Nan Liu, Gao-Qiang Liu
Life.2023; 13(3): 764. CrossRef
Boosting cordycepin production through plant-based oils for vegetarian consumption
Watcharin Yuttavanichakul, Nipaporn Kanthong, Nuntaporn Pungsungvorn
Journal of Applied Research on Science and Technology (JARST).2023;[Epub] CrossRef
A Possible Synergistic Herbal Solution for COVID-19
Ephraim Shmaya Lansky
Frontiers in Bioscience-Scholar.2022;[Epub] CrossRef
Un caso di COVID-19 curato con la micoterapia
Michel G. MALLARD
Gazzetta Medica Italiana Archivio per le Scienze Mediche.2022;[Epub] CrossRef
Cordyceps militaris as a Bio Functional Food Source: Pharmacological Potential, Anti-Inflammatory Actions and Related Molecular Mechanisms
Abdul-Rehman Phull, Madiha Ahmed, Hye-Jin Park
Microorganisms.2022; 10(2): 405. CrossRef
Medicinal Fungi with Antiviral Effect
Yu Zhang, Guoying Zhang, Jianya Ling
Molecules.2022; 27(14): 4457. CrossRef
Antioxidant Activity of Mushroom Extracts/Polysaccharides—Their Antiviral Properties and Plausible AntiCOVID-19 Properties
Sechul Chun, Judy Gopal, Manikandan Muthu
Antioxidants.2021; 10(12): 1899. CrossRef
Novel Fatty Acid in Cordyceps Suppresses Influenza A (H1N1) Virus-Induced Proinflammatory Response Through Regulating Innate Signaling Pathways
Run-Feng Li, Xiao-Bo Zhou, Hong-Xia Zhou, Zi-Feng Yang, Hai-Ming Jiang, Xiao Wu, Wen-Jia Li, Jian-Jian Qiu, Jia-Ning Mi, Ming Chen, Nan-Shan Zhong, Guo-Yuan Zhu, Zhi-Hong Jiang
ACS Omega.2021; 6(2): 1505. CrossRef
Cysteine-Rich Hydrophobin Gene Family: Genome Wide Analysis, Phylogeny and Transcript Profiling in Cordyceps militaris
Xiao Li, Fen Wang, Yanyan Xu, Guijun Liu, Caihong Dong
International Journal of Molecular Sciences.2021; 22(2): 643. CrossRef
Repurposing potential of Ayurvedic medicinal plants derived active principles against SARS-CoV-2 associated target proteins revealed by molecular docking, molecular dynamics and MM-PBSA studies
Akalesh Kumar Verma, Vikas Kumar, Sweta Singh, Bhabesh Ch. Goswami, Ihosvany Camps, Aishwarya Sekar, Sanghwa Yoon, Keun Woo Lee
Biomedicine & Pharmacotherapy.2021; 137: 111356. CrossRef
A new nucleoside and two new pyrrole alkaloid derivatives from Cordyceps militaris
Yafu Xue, Leilei Wu, Yulian Ding, Xinming Cui, Zhuzhen Han, Hong Xu
Natural Product Research.2020; 34(3): 341. CrossRef
CmVVD is involved in fruiting body development and carotenoid production and the transcriptional linkage among three blue‐light receptors in edible fungus Cordyceps militaris
Jiaojiao Zhang, Fen Wang, Ying Yang, Ying Wang, Caihong Dong
Environmental Microbiology.2020; 22(1): 466. CrossRef
Effects of nanobubble water supplementation on biomass accumulation during mycelium cultivation of Cordyceps militaris and the antioxidant activities of extracted polysaccharides
Long Xiao, Shuang Sun, Kejuan Li, Zhongfang Lei, Kazuya Shimizu, Zhenya Zhang, Yasuhisa Adachi
Bioresource Technology Reports.2020; 12: 100600. CrossRef
Analysis of reference genes stability and histidine kinase expression under cold stress in Cordyceps militaris
Yong-Nan Liu, Bi-Yang Liu, You-Chu Ma, Hai-Long Yang, Gao-Qiang Liu, Shwet Kamal
PLOS ONE.2020; 15(8): e0236898. CrossRef
Trends in the Immunomodulatory Effects of Cordyceps militaris: Total Extracts, Polysaccharides and Cordycepin
Chun-Ting Lee, Keng-Shiang Huang, Jei-Fu Shaw, Jung-Ren Chen, Wen-Shuo Kuo, Gangxu Shen, Alexandru Mihai Grumezescu, Alina Maria Holban, Yi-Ting Wang, Jun-Sheng Wang, Yi-Ping Hsiang, Yu-Mei Lin, Hsiao-Han Hsu, Chih-Hui Yang
Frontiers in Pharmacology.2020;[Epub] CrossRef
Effects ofCordyceps militarissupplementation on the immune response and upper respiratory infection in healthy adults: a randomized, double-blind, placebo-controlled study
Su Jin Jung, Ji Hyun Hwang, Mi Ra Oh, Soo Wan Chae
Journal of Nutrition and Health.2019; 52(3): 258. CrossRef
Advance in Cordyceps militaris (Linn) Link polysaccharides: Isolation, structure, and bioactivities: A review
Jixian Zhang, Chaoting Wen, Yuqing Duan, Haihui Zhang, Haile Ma
International Journal of Biological Macromolecules.2019; 132: 906. CrossRef
The blue-light receptor CmWC-1 mediates fruit body development and secondary metabolism in Cordyceps militaris
Tao Yang, Mingmin Guo, Huaijun Yang, Suping Guo, Caihong Dong
Applied Microbiology and Biotechnology.2016; 100(2): 743. CrossRef
Cordyceps militaris (L.) Link: Chemical Bioactive Compounds and Pharmacological Activities
Do Hai Lan, Nguyen Thi Kim Thu, Pham Thi Lan, Pham Van Nha , Bui Thanh Tung
Journal of Pharmacy and Nutrition Sciences .2016; 6(4): 153. CrossRef
Partial structural characterization, as well as immunomodulatory and anti-aging activities of CP2-c2-s2 polysaccharide from Cordyceps militaris
Xiaojuan Liu, Yicheng Huang, Yunjiao Chen, Yong Cao
RSC Adv..2016; 6(106): 104094. CrossRef
Cultured Mycelium Cordyceps sinensis allevi¬ates CCl4-induced liver inflammation and fibrosis in mice by activating hepatic natural killer cells
Yuan Peng, Kai Huang, Li Shen, Yan-yan Tao, Cheng-hai Liu
Acta Pharmacologica Sinica.2016; 37(2): 204. CrossRef
Cordyceps industry in China
Caihong Dong, Suping Guo, Wenfeng Wang, Xingzhong Liu
Mycology.2015; 6(2): 121. CrossRef
Anti-cancer effect of Cordyceps militaris in human colorectal carcinoma RKO cells via cell cycle arrest and mitochondrial apoptosis
Hwan Hee Lee, Seulki Lee, Kanghyo Lee, Yu Su Shin, Hyojeung Kang, Hyosun Cho
DARU Journal of Pharmaceutical Sciences.2015;[Epub] CrossRef
Anti-tumor effect of Cordyceps militaris in HCV-infected human hepatocarcinoma 7.5 cells
Seulki Lee, Hwan Hee Lee, Jisung Kim, Joohee Jung, Aree Moon, Choon-Sik Jeong, Hyojeung Kang, Hyosun Cho
Journal of Microbiology.2015; 53(7): 468. CrossRef

Research Support, Non-U.S. Gov't

Alicyclobacillus tengchongensis sp. nov., a Thermo-Acidophilic Bacterium Isolated from Hot Spring Soil: Min Goo Kim , Jae-Chan Lee , Dong-Jin Park , Wen-Jun Li , Chang-Jin Kim Kim; J. Microbiol. 2014;52(10):884-889. Published online July 18, 2014; DOI: https://doi.org/10.1007/s12275-014-3625-z

818 View
0 Download
20 Crossref

Abstract PDF

A thermo-acidophilic bacterium, designated strain ACK006T, was isolated from the soil of a hot spring at Tengchong in China. Cells were Gram-staining-positive, motile, catalasepositive and oxidase-negative, spore-forming rods. The isolate grew aerobically at 30–50°C (optimum at 45°C), pH 2.0–6.0 (optimum pH 3.2) and 0–5.0% (w/v) NaCl (optimum 1% NaCl). Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain ACK006T belongs to the genus Alicyclobacillus with the sequence similarity of 92.3, 92.4, 92.5, and 92.8% to Alicyclobacillus cycloheptanicus SCHT, Alicyclobacillus ferrooxydans TC-34T, Alicyclobacillus contaminans 3-A191T and Alicyclobacillus disulfidooxidans SD-11T, respectively. Similarity to other species of the genus Alicyclobacillus was 90.3–92.8% and similarity to species of the genus Tumebacillus was 85.9–87.8%. The genomic DNA G+C content was 53.7 mol%. The predominant menaquinone was MK-7. Major fatty acids were ω-cycloheptane C18:0, iso-C17:0 and anteiso-C17:0. The cell-wall peptidoglycan was the A1γ type; containing meso-diaminopimelic acid as the diagnostic diamino acid. On the basis of polyphasic analysis from this study, strain ACK006T represents a novel species of the genus Alicyclobacillus for which the name Alicyclobacillus tengchongensis sp. nov. is proposed. The type strain is ACK006T (=KCTC 33022T =DSM 25924T).

Citations

Citations to this article as recorded by

Draft genome sequences of Alicyclobacillus strains isolated from the Chinoike-Jigoku hot spring, Oita, Japan
Yu Sato, Eriko Miyamoto, Yuna Sato, Shintaro Maeno, Simon Roux
Microbiology Resource Announcements.2026;[Epub] CrossRef
A chemotaxonomic and phylogenomic re-evaluation of the genus Alicyclobacillus: A proposal for reclassification of about half of the species into the new genus, Paenalicyclobacillus gen. nov., with an emended description of the genus Alicyclobacillus, and
Jaap S. Sinninghe Damsté, Laura Villanueva, Rüdiger Pukall
Systematic and Applied Microbiology.2025; 48(6): 126651. CrossRef
Taxonomic Diversity and Functional Traits of Soil Bacterial Communities under Radioactive Contamination: A Review
Elena Belykh, Tatiana Maystrenko, Ilya Velegzhaninov, Marina Tavleeva, Elena Rasova, Anna Rybak
Microorganisms.2024; 12(4): 733. CrossRef
Genomic insight and physiological characterization of thermoacidophilic Alicyclobacillus isolated from Yellowstone National Park
Hye Won Kim, Na Kyung Kim, Alex P. R. Phillips, David A. Parker, Ping Liu, Rachel J. Whitaker, Christopher V. Rao, Roderick I. Mackie
Frontiers in Microbiology.2023;[Epub] CrossRef
Proposal of a novel subspecies: Alicyclobacillus hesperidum subspecies aegles
Keiichi Goto, Taichi Fujii, Kazuki Yasui, Kaoru Mochida, Yuko Kato-Tanaka, Sho Morohoshi, Sun-Young An, Hiroaki Kasai, Akira Yokota
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Fruit Juice Spoilage by Alicyclobacillus: Detection and Control Methods—A Comprehensive Review
Patra Sourri, Chrysoula C. Tassou, George-John E. Nychas, Efstathios Z. Panagou
Foods.2022; 11(5): 747. CrossRef
Comprehensive assessment of bacterial communities and their functional profiles in the Huang Gang Creek in the Tatun Volcano Group basin, Taiwan using 16S rRNA amplicon sequencing
Jung-Sheng Chen, Hsin-Chi Tsai, Yu-Ling Hsu, Viji Nagarajan, Hung-Yuan Su, Bashir Hussain, Bing-Mu Hsu
Ecotoxicology and Environmental Safety.2022; 234: 113375. CrossRef
Co-inoculation with beneficial microorganisms enhances tannery sludge bioleaching with Acidithiobacillus thiooxidans
Jian Yao, Miaoxiao Wang, Lu Wang, Min Gou, Jing Zeng, Yue-Qin Tang
Environmental Science and Pollution Research.2022; 29(32): 48509. CrossRef
Alicyclobacillus curvatus sp. nov. and Alicyclobacillus mengziensis sp. nov., two acidophilic bacteria isolated from acid mine drainage
Zhen Jiang, Dildar Wu, Zong-Lin Liang, Xiu-Tong Li, Ye Huang, Nan Zhou, Zheng-Hua Liu, Guang-Ji Zhang, Yan Jia, Hua-Qun Yin, Shuang-Jiang Liu, Cheng-Ying Jiang
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Prokaryotic and eukaryotic diversity in hydrothermal continental systems
Bruna Silva, Catarina Antunes, Filipa Andrade, Eduardo Ferreira da Silva, Jose Antonio Grande, Ana T. Luís
Archives of Microbiology.2021; 203(7): 3751. CrossRef
Metagenomic Approach to Bacterial Diversity and Lipolytic Enzymes’ Genes from a Steam Soil of Los Humeros Geothermal Field (Puebla, México)
Paola Carolina Mora-González, Graciela Espinosa-Luna, Abril Ramírez-Higuera, Carolina Peña-Montes, Gerardo Valerio-Alfaro, Alejandro Sánchez-Flores, Rodolfo Quintana-Castro, María-Guadalupe Sánchez-Otero, Rosa María Oliart-Ros
Geomicrobiology Journal.2021; 38(4): 304. CrossRef
Heat resistance and genomics of spoilage Alicyclobacillus spp. Isolated from fruit juice and fruit-based beverages
Thi Song Van Luong, Catherine Moir, John P. Bowman, P. Scott Chandry
Food Microbiology.2021; 94: 103662. CrossRef
Alicyclobacillusspoilage and control - a review
Soisuda Pornpukdeewattana, Aphacha Jindaprasert, Salvatore Massa
Critical Reviews in Food Science and Nutrition.2020; 60(1): 108. CrossRef
Alicyclobacillus– bacteria still not understood
Justyna Dąbrowska, Alina Kunicka-Styczyńska
Postępy Mikrobiologii - Advancements of Microbiology.2018; 57(2): 117. CrossRef
Microbial communities and their predicted metabolic functions in a desiccating acid salt lake
Elena Zaikova, Kathleen C. Benison, Melanie R. Mormile, Sarah Stewart Johnson
Extremophiles.2018; 22(3): 367. CrossRef
Recent progress in biohydrometallurgy and microbial characterisation
Anna H. Kaksonen, Naomi J. Boxall, Yosephine Gumulya, Himel N. Khaleque, Christina Morris, Tsing Bohu, Ka Yu Cheng, Kayley M. Usher, Aino-Maija Lakaniemi
Hydrometallurgy.2018; 180: 7. CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2016; 66(7): 2463. CrossRef
Chemical and bacterial leaching of metals from a smelter slag in acid solutions
Anna H. Kaksonen, Silja Särkijärvi, Jaakko A. Puhakka, Esa Peuraniemi, Saku Junnikkala, Olli H. Tuovinen
Hydrometallurgy.2016; 159: 46. CrossRef
Alicyclobacillus spp.: New Insights on Ecology and Preserving Food Quality through New Approaches
Emanuela Ciuffreda, Antonio Bevilacqua, Milena Sinigaglia, Maria Corbo
Microorganisms.2015; 3(4): 625. CrossRef
Genotypic and Phenotypic Heterogeneity in Alicyclobacillus acidoterrestris: A Contribution to Species Characterization
Antonio Bevilacqua, Monica Mischitelli, Valeria Pietropaolo, Emanuela Ciuffreda, Milena Sinigaglia, Maria Rosaria Corbo, Anderson de Souza Sant'Ana
PLOS ONE.2015; 10(10): e0141228. CrossRef

Research Support, Non-U.S. Gov't

Dyella jejuensis sp. nov., Isolated from Soil of Hallasan Mountain in Jeju Island: Min-Soo Kim , Dong-Wook Hyun , Joon Yong Kim , Soyeon Kim , Jin-Woo Bae , Eun-Jin Park; J. Microbiol. 2014;52(5):373-377. Published online May 9, 2014; DOI: https://doi.org/10.1007/s12275-014-3670-7

973 View
0 Download
20 Crossref

Abstract PDF

A novel bacterium, designated JP1T, was isolated from soil of Hallasan Mountain in Jeju Island. The isolate was a Gram- negative, aerobic, motile and rod-shaped (0.2–0.4 × 1.2–2.0 μm) bacterium. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strain JP1T was closely related to Dyella koreensis with 97.6% similarity. Growth of strain JP1T occurred at 10–37°C, pH 5–7 and 0–1% (w/v) NaCl. The genomic DNA G+C content of strain JP1T was 62.1 mol%. The major fatty acids were iso-C16:0, iso-C17:1 ω9c, and iso- C15:0. The predominant quinone was ubiquinone-8. The major polar lipids of strain JP1T were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, uniden-tified aminolipids and unidentified aminophospholipids. The DNA-DNA relatedness values between strain JP1T and pre-viously reported Dyella species were <10%. Based on pheno-typic, genotypic, and phylogenetic distinctness, strain JP1T represents a novel species in the genus Dyella, for which the name Dyella jejuensis sp. nov. is proposed. The type strain is JP1T (=KACC 17701T =JCM 19615T).

Citations

Citations to this article as recorded by

Dyella stictolepturae sp. nov., isolated from the larva gut of red-brown longhorn beetle (Stictoleptura succedanea)
Bora Kim, Ah-In Yang, Sung-Hong Joe, Hae-In Joe, Na-Ri Shin
Antonie van Leeuwenhoek.2026;[Epub] CrossRef
Effects of different cultivation media on root bacterial community characteristics of greenhouse tomatoes
Xinjian Zhang, Qiang Li, Fangyuan Zhou, Susu Fan, Xiaoyan Zhao, Chi Zhang, Kun Yan, Xiaoqing Wu
Frontiers in Microbiology.2023;[Epub] CrossRef
Soil pH and aridity influence distributions of branched tetraether lipids in grassland soils along an aridity transect
Jingjing Guo, Tian Ma, Nana Liu, Xinying Zhang, Huifeng Hu, Wenhong Ma, Zhiheng Wang, Xiaojuan Feng, Francien Peterse
Organic Geochemistry.2022; 164: 104347. CrossRef
Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
Su-Won Jeong, Jeong Eun Han, June-Young Lee, Ji-Ho Yoo, Do-Yeon Kim, In Chul Jeong, Jee-Won Choi, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Euon Jung Tak, Hojun Sung, Hyun Sik Kim, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
Journal of Microbiology.2022; 60(6): 576. CrossRef
Actinoplanes solisilvae sp. nov., Isolated from Birch Forest Soil
Qingyun Ma, Qi Zhang, Xu Jiang, Delong Kong, Xiaoyan Han, Huiying Xue, Yiqing Zhou, Yuqin Zhang, Wei Zhang, Zhiyong Ruan
Current Microbiology.2020; 77(11): 3799. CrossRef
Aerosticca soli gen. nov., sp. nov., an aerobic gammaproteobacterium isolated from crude oil-contaminated soil
Miho Watanabe, Hisaya Kojima, Manabu Fukui
Archives of Microbiology.2020; 202(5): 1069. CrossRef
The complex interactions between novel DEHP-metabolising bacteria and the microbes in agricultural soils
Mengke Song, Yujie Wang, Longfei Jiang, Ke Peng, Zikai Wei, Dayi Zhang, Yongtao Li, Gan Zhang, Chunling Luo
Science of The Total Environment.2019; 660: 733. CrossRef
Dyella monticola sp. nov. and Dyella psychrodurans sp. nov., isolated from monsoon evergreen broad-leaved forest soil of Dinghu Mountain, China
Xiang-yue Zhou, Zeng-hong Gao, Mei-hong Chen, Mei-qi Jian, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology .2019; 69(4): 1016. CrossRef
Dyella dinghuensis sp. nov. and Dyella choica sp. nov., isolated from forest soil
Fang-hong Ou, Zeng-hong Gao, Mei-hong Chen, Jie-yi Bi, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology .2019; 69(5): 1496. CrossRef
Dyella halodurans sp. nov., isolated from lower subtropical forest soil
Yu-min Cai, Zeng-hong Gao, Mei-hong Chen, Yi-xian Huang, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology.2018; 68(10): 3237. CrossRef
Dyella acidisoli sp. nov., D. flagellata sp. nov. and D. nitratireducens sp. nov., isolated from forest soil
Mei-hong Chen, Fan Xia, Ying-ying Lv, Xiang-yue Zhou, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology.2017; 67(3): 736. CrossRef
Dyella lipolytica sp. nov., a lipolytic bacterium isolated from lower subtropical forest soil
Liang Tang, Mei-hong Chen, Xi-chen Nie, Meng-ran Ma, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology .2017; 67(5): 1235. CrossRef
First case of neonatal bacteremia due to Dyella genus
Nesrine Hakima, Philippe Bidet, Maureen Lopez, Stéphane Rioualen, Agnès Carol, Stéphane Bonacorsi
Diagnostic Microbiology and Infectious Disease.2017; 87(2): 199. CrossRef
Dyella caseinilytica sp. nov., Dyella flava sp. nov. and Dyella mobilis sp. nov., isolated from forest soil
Fan Xia, Mei-hong Chen, Ying-ying Lv, Han-yun Zhang, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology.2017; 67(9): 3237. CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2016; 66(1): 1. CrossRef
Dyella humi sp. nov., isolated from forest soil
Mei-Hong Chen, Ying-Ying Lv, Jia Wang, Liang Tang, Li-Hong Qiu
International Journal of Systematic and Evolutionary Microbiology.2016; 66(11): 4372. CrossRef
Effect of lactic acid bacteria isolated from fermented mustard on immunopotentiating activity
Chen-Kai Chang, Shu-Chen Wang, Chih-Kwang Chiu, Shih-Ying Chen, Zong-Tsi Chen, Pin-Der Duh
Asian Pacific Journal of Tropical Biomedicine.2015; 5(4): 281. CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_11): 3763. CrossRef
In vitro study of the effect of a probiotic bacterium Lactobacillus rhamnosus against herpes simplex virus type 1
Soghra Khani, Mohammad Motamedifar, Hossein Golmoghaddam, Hamideh Mahmoodzadeh Hosseini, Zahra Hashemizadeh
The Brazilian Journal of Infectious Diseases.2012; 16(2): 129. CrossRef
Probiotics and Lung Diseases
Paul Forsythe
Chest.2011; 139(4): 901. CrossRef

Research Support, Non-U.S. Gov't

Sequential Immunosuppressive Activities of Bacterial Secondary Metabolites from the Entomopahogenic Bacterium Xenorhabdus nematophila: Seonghyeon Eom , Youngjin Park , Yonggyun Kim; J. Microbiol. 2014;52(2):161-168. Published online February 1, 2014; DOI: https://doi.org/10.1007/s12275-014-3251-9

935 View
0 Download
40 Crossref

Abstract PDF

The entomopathogenic bacterium Xenorhabdus nematophila secretes at least eight bacterial metabolites that play crucial roles suppressing target insect immune responses by inhibiting eicosanoid biosynthesis. We analyzed sequential changes in bacterial metabolite production during bacterial growth and analyzed their individual immunosuppressive activities against the insect host, Spodoptera exigua. X. nematophila exhibited a typical bacterial growth pattern in both insect host and culture medium, and eight metabolites were secreted at different time points. At the early growth phase (6–12 h), Ac-FGV and PHPP were detected in significant amounts in the culture broth. At this early phase, both Ac-FGV (18 μg/ml) and oxindole (110 μg/ml) levels significantly inhibited phenoloxidase and phospholipase A2 activities in S. exigua hemolymph. At the late growth phase (12–36 h), all eight metabolites were detected at significant levels (10–140 μg/ml) in the culture broth and were sufficient to induce hemocyte toxicity. These results suggest that X. nematophila sequentially produces immunosuppressive metabolites that might sequentially and cooperatively inhibit different steps of insect immune responses.

Citations

Citations to this article as recorded by

Innate Immunity in Insects: The Lights and Shadows of Phenoloxidase System Activation
Agnieszka Zdybicka-Barabas, Sylwia Stączek, Magdalena Kunat-Budzyńska, Małgorzata Cytryńska
International Journal of Molecular Sciences.2025; 26(3): 1320. CrossRef
Evaluation of the mosquitocidal activity of Photorhabdus and Xenorhabdus extracts against the larvae of Aedes aegypti (Diptera: Culicidae)
Supawan Pansri, Chanakan Subkrasae, Jiranun Ardpairin, Abdulhakam Dumidae, Wipanee Meesil, Wandee Wattanachaiyingcharoen, Sarunporn Tandhavanant, Helge B Bode, Aunchalee Thanwisai, Apichat Vitta
Journal of Entomological and Acarological Research.2025;[Epub] CrossRef
Entomopathogenic Nematodes and Bioactive Compounds of Their Bacterial Endosymbionts Act Synergistically in Combination with Spinosad to Kill Phthorimaea operculella (Zeller, 1873) (Lepidoptera: Gelechiidae), a Serious Threat to Food Security
Ebubekir Yüksel, Rachid Lahlali, Aydemir Barış, Muhammad Sameeullah, Furkan Ulaş, Abdurrahman Sami Koca, Essaid Ait Barka, Mustafa İmren, Abdelfattah Dababat
Microorganisms.2025; 13(10): 2368. CrossRef
Exploring Xenorhabdus and Photorhabdus Nematode Symbionts in Search of Novel Therapeutics
Ewa Sajnaga, Waldemar Kazimierczak, Magdalena Anna Karaś, Monika Elżbieta Jach
Molecules.2024; 29(21): 5151. CrossRef
From soil to host: Discovering the tripartite interactions between entomopathogenic nematodes, symbiotic bacteria and insect pests and related challenges
Najwa Seddiqi Kallali, Abderrahman Ouijja, Khadija Goura, Salah-Eddine Laasli, Jihane Kenfaoui, Youssef Benseddik, Abdelali Blenzar, Abdelmalek Boutaleb Joutei, Moussa El Jarroudi, Fouad Mokrini, Rachid Lahlali
Journal of Natural Pesticide Research.2024; 7: 100065. CrossRef
Effects of TmTak1 silencing on AMP production as an Imd pathway component in Tenebrio molitor
Su Hyeon Hwang, Ho Am Jang, Maryam Ali Mohammadie Kojour, Keunho Yun, Yong Seok Lee, Yeon Soo Han, Yong Hun Jo
Scientific Reports.2023;[Epub] CrossRef
Assessment of biocontrol potential of different Steinernema species and their bacterial symbionts, Xenorhabdus species against larvae of almond moth, Ephestia cautella (Walker)
Ebubekir Yüksel, Nesrin Ormanoğlu, Mustafa İmren, Ramazan Canhilal
Journal of Stored Products Research.2023; 101: 102082. CrossRef
Association of Midgut Bacteria and Their Metabolic Pathways with Zika Infection and Insecticide Resistance in Colombian Aedes aegypti Populations
Andrea Arévalo-Cortés, Ashish Damania, Yurany Granada, Sara Zuluaga, Rojelio Mejia, Omar Triana-Chavez
Viruses.2022; 14(10): 2197. CrossRef
The Entomopathogenic Nematodes H. bacteriophora and S. carpocapsae Inhibit the Activation of proPO System of the Nipa Palm Hispid Octodonta nipae (Coleoptera: Chrysomelidae)
Nafiu Sanda, Bofeng Hou, Youming Hou
Life.2022; 12(7): 1019. CrossRef
Larvicidal activity of Photorhabdus and Xenorhabdus bacteria isolated from insect parasitic nematodes against Aedes aegypti and Aedes albopictus
Chanakan Subkrasae, Jiranun Ardpairin, Abdulhakam Dumidae, Pichamon Janthu, Paramaporn Muangpat, Raxsina Polseela, Sarunporn Tandhavanant, Aunchalee Thanwisai, Apichat Vitta
Acta Tropica.2022; 235: 106668. CrossRef
Entomopathogenic nematodes as potential and effective biocontrol agents against cutworms, Agrotis spp.: present and future scenario
Deepak Kumar, Pritam Kumari, Rubal Kamboj, Anil Kumar, Prakash Banakar, Vinod Kumar
Egyptian Journal of Biological Pest Control.2022;[Epub] CrossRef
Integrated Biological Control Using a Mixture of Two Entomopathogenic Bacteria, Bacillus thuringiensis and Xenorhabdus hominickii, against Spodoptera exigua and Other Congeners
Md Tafim Hossain Hrithik, Youngjin Park, Hyemi Park, Yonggyun Kim
Insects.2022; 13(10): 860. CrossRef
Photorhabdus and Xenorhabdus as Symbiotic Bacteria for Bio-Control Housefly (Musca domestica L.)
Ahmed Mohamed Abd El-Rah, Amr Mohamed Abdelazeem, Hanaa Elbrense, Santiago Vergara-Pi
Pakistan Journal of Biological Sciences.2022; 25(7): 586. CrossRef
Control Potentials of Three Entomopathogenic Bacterial Isolates for the Carob Moth, Ectomyelois ceratoniae (Lepidoptera: Pyralidae) in Pomegranates
Saqer S. Alotaibi, Hadeer Darwish, Sarah Alharthi, Akram Alghamdi, Ahmed Noureldeen, Ahmed M. Fallatah, András Fodor, Amal Al-Barty, Bander Albogami, Alaa Baazeem
Agriculture.2021; 11(12): 1256. CrossRef
Functional interaction of bacterial virulence factors of Xenorhabdus nematophila with a calcium-independent cytosolic PLA2 of Spodoptera exigua
Vatanparast Mohammad, Yonggyun Kim
Journal of Invertebrate Pathology.2020; 169: 107309. CrossRef
Immunosuppressive Activities of Novel PLA2 Inhibitors from Xenorhabdus hominickii, an Entomopathogenic Bacterium
Md. Mahi Imam Mollah, Aman Dekebo, Yonggyun Kim
Insects.2020; 11(8): 505. CrossRef
The great potential of entomopathogenic bacteria Xenorhabdus and Photorhabdus for mosquito control: a review
Wellington Junior da Silva, Harry Luiz Pilz-Júnior, Ralf Heermann, Onilda Santos da Silva
Parasites & Vectors.2020;[Epub] CrossRef
Benzylideneacetone and other phenylethylamide bacterial metabolites induce apoptosis to kill insects
Md. Mahi Imam Mollah, Fatema Yeasmin, Yonggyun Kim
Journal of Asia-Pacific Entomology.2020; 23(2): 449. CrossRef
Partner-specific induction of Spodoptera frugiperda immune genes in response to the entomopathogenic nematobacterial complex Steinernema carpocapsae-Xenorhabdus nematophila
Louise Huot, Audrey Bigourdan, Sylvie Pagès, Jean-Claude Ogier, Pierre-Alain Girard, Nicolas Nègre, Bernard Duvic
Developmental & Comparative Immunology.2020; 108: 103676. CrossRef
The prophenoloxidase system in Drosophila participates in the anti-nematode immune response
Dustin Cooper, Caitlin Wuebbolt, Christa Heryanto, Ioannis Eleftherianos
Molecular Immunology.2019; 109: 88. CrossRef
Variation in pathogenicity of different strains of Xenorhabdus nematophila; Differential immunosuppressive activities and secondary metabolite production
Md. Ariful Hasan, Shabbir Ahmed, Md. Mahi Imam Mollah, Dongwoon Lee, Yonggyun Kim
Journal of Invertebrate Pathology.2019; 166: 107221. CrossRef
Prostaglandins and Other Eicosanoids in Insects: Biosynthesis and Biological Actions
David Stanley, Yonggyun Kim
Frontiers in Physiology.2019;[Epub] CrossRef
Identification of entomopathogenic nematodes and symbiotic bacteria from Nam Nao National Park in Thailand and larvicidal activity of symbiotic bacteria against Aedes aegypti and Aedes albopictus
Temsiri Yooyangket, Paramaporn Muangpat, Raxsina Polseela, Sarunporn Tandhavanant, Aunchalee Thanwisai, Apichat Vitta, Guido Favia
PLOS ONE.2018; 13(4): e0195681. CrossRef
Differential immunosuppression by inhibiting PLA2 affects virulence of Xenorhabdus hominickii and Photorhabdus temperata temperata
Shabbir Ahmed, Yonggyun Kim
Journal of Invertebrate Pathology.2018; 157: 136. CrossRef
Challenging the larvae of Helicoverpa armigera and assessing the immune responses to nematode-bacterium complex
Istkhar, Ashok Kumar Chaubey
Phytoparasitica.2018; 46(1): 75. CrossRef
Refining the Natural Product Repertoire in Entomopathogenic Bacteria
Nicholas Jay Tobias, Yi-Ming Shi, Helge B. Bode
Trends in Microbiology.2018; 26(10): 833. CrossRef
Role of Endosymbionts in Insect–Parasitic Nematode Interactions
Ioannis Eleftherianos, Shruti Yadav, Eric Kenney, Dustin Cooper, Yaprak Ozakman, Jelena Patrnogic
Trends in Parasitology.2018; 34(5): 430. CrossRef
Eicosanoid mediation of immune responses at early bacterial infection stage and its inhibition by Photorhabdus temperata subsp. temperata, an entomopathogenic bacterium
Hyoil Kim, Duyeol Choi, Jihyeon Jung, Yonggyun Kim
Archives of Insect Biochemistry and Physiology.2018;[Epub] CrossRef
Identification and bacterial characteristics of Xenorhabdus hominickii ANU101 from an entomopathogenic nematode, Steinernema monticolum
Youngjin Park, Sangjin Kang, Md. Sadekuzzaman, Hyeonghwan Kim, Jin-Kyo Jung, Yonggyun Kim
Journal of Invertebrate Pathology.2017; 144: 74. CrossRef
The Global Transcription Factor Lrp Is both Essential for and Inhibitory to Xenorhabdus nematophila Insecticidal Activity
Ángel M. Casanova-Torres, Upasana Shokal, Neta Morag, Ioannis Eleftherianos, Heidi Goodrich-Blair, Harold L. Drake
Applied and Environmental Microbiology.2017;[Epub] CrossRef
Effects of an entomopathogen nematode on the immune response of the insect pest red palm weevil: Focus on the host antimicrobial response
Simona Binda-Rossetti, Maristella Mastore, Marina Protasoni, Maurizio F. Brivio
Journal of Invertebrate Pathology.2016; 133: 110. CrossRef
A Mixture ofBacillus thuringiensissubsp.israelensisWithXenorhabdus nematophila-Cultured Broth Enhances Toxicity Against MosquitoesAedes albopictusandCulex pipiens pallens(Diptera: Culicidae)
Youngjin Park, Jin Kyo Jung, Yonggyun Kim
Journal of Economic Entomology.2016; 109(3): 1086. CrossRef
Microbiology of sugar‐rich environments: diversity, ecology and system constraints
Bart Lievens, John E. Hallsworth, Maria I. Pozo, Zouhaier Ben Belgacem, Andrew Stevenson, Kris A. Willems, Hans Jacquemyn
Environmental Microbiology.2015; 17(2): 278. CrossRef
Comparison of Xenorhabdus bovienii bacterial strain genomes reveals diversity in symbiotic functions
Kristen E. Murfin, Amy C. Whooley, Jonathan L. Klassen, Heidi Goodrich-Blair
BMC Genomics.2015;[Epub] CrossRef
Entomopathogenic bacterium, Xenorhabdus nematophila and Photorhabdus luminescens, enhances Bacillus thuringiensis Cry4Ba toxicity against yellow fever mosquito, Aedes aegypti (Diptera: Culicidae)
Youngjin Park
Journal of Asia-Pacific Entomology.2015; 18(3): 459. CrossRef
A Technique to Enhance Insecticidal Efficacy Using Bt Cry Toxin Mixture and Eicosanoid Biosynthesis Inhibitor
Seonghyeon Eom, Youngjin Park, Yonggyun Kim
The Korean Journal of Pesticide Science.2015; 19(3): 301. CrossRef
Anopheles gambiae eicosanoids modulate Plasmodium berghei survival from oocyst to salivary gland invasion
Susana Ramos, Ana Custódio, Henrique Silveira
Memórias do Instituto Oswaldo Cruz.2014; 109(5): 668. CrossRef
Integrin β subunit and its RNA interference in immune and developmental processes of the Oriental tobacco budworm, Helicoverpa assulta
Youngjin Park, Seung-Joon Ahn, Heiko Vogel, Yonggyun Kim
Developmental & Comparative Immunology.2014; 47(1): 59. CrossRef
A Technique to Enhance Bacillus thuringiensis Spectrum and Control Efficacy Using Cry Toxin Mixture and Immunosuppressant
Seonghyeon Eom, Youngjin Park, Yonggyun Kim
The Korean Journal of Pesticide Science.2014; 18(3): 181. CrossRef
Effect of Cellular Phospholipase A2Inhibition on Enhancement of Bt Insecticidal Activity
Seonghyeon Eom, Jiyeong Park, Kunwoo Kim, Yonggyun Kim
Korean journal of applied entomology.2014; 53(3): 271. CrossRef

Research Support, Non-U.S. Gov't

Next-Generation Sequencing-Based Transcriptome Analysis of L-Lysine-Producing Corynebacterium glutamicum ATCC 21300 Strain: Hong-Il Kim , Jae-Young Nam , Jae-Yong Cho , Chang-Soo Lee , Young-Jin Park; J. Microbiol. 2013;51(6):877-880. Published online December 19, 2013; DOI: https://doi.org/10.1007/s12275-013-3236-0

758 View
0 Download
4 Crossref

Abstract PDF

In the present study, 151 genes showed a significant change in their expression levels in Corynebacterium glutamicum ATCC 21300 compared with those of C. glutamicum ATCC 13032. Of these 151 genes, 56 genes (2%) were up-regulated and 95 genes (3%) were down-regulated. RNA sequencing analysis also revealed that 11 genes, involved in the L-lysine biosynthetic pathway of C. glutamicum, were up- or downregulated compared with those of C. glutamicum ATCC 13032. Of the 151 genes, 10 genes were identified to have mutations including SNP (9 genes) and InDel (1 gene). This information will be useful for genome breeding of C. glutamicum to develop an industrial amino acid-producing strain with minimal mutation.

Citations

Citations to this article as recorded by

Review of the Proteomics and Metabolic Properties of Corynebacterium glutamicum
Juhwan Park, Sooa Lim
Microorganisms.2024; 12(8): 1681. CrossRef
Transcriptome analysis of l-leucine-producing Corynebacterium glutamicum under the addition of trimethylglycine
Jian Wang, Xuesong Wang, Qing Liang, Deheng Li, Dawei Li, Qunqun Guo
Amino Acids.2022; 54(2): 229. CrossRef
RETRACTED ARTICLE: Comparative analysis of the Corynebacterium glutamicum transcriptome in response to changes in dissolved oxygen levels
Xiuxia Liu, Sun Yang, Fen Wang, Xiaofeng Dai, Yankun Yang, Zhonghu Bai
Journal of Industrial Microbiology and Biotechnology.2017; 44(2): 181. CrossRef
Transcriptome and Gene Ontology (GO) Enrichment Analysis Reveals Genes Involved in Biotin Metabolism That Affect l-Lysine Production in Corynebacterium glutamicum
Hong-Il Kim, Jong-Hyeon Kim, Young-Jin Park
International Journal of Molecular Sciences.2016; 17(3): 353. CrossRef

Research Support, Non-U.S. Gov't

Adjuvant Efficacy of mOMV against Avian Influenza Virus Infection in Mice: Byeong-Jae Lee , Sang-Ho Lee , Min-Suk Song , Philippe Noriel Q. Pascua , Hyeok-il Kwon , Su-Jin Park , Eun-Ha Kim , Arun Decano , Se Mi Kim , Gyo Jin Lim , Doo-Jin Kim , Kyu-Tae Chang , Sang-Hyun Kim , Young Ki Choi; J. Microbiol. 2013;51(5):682-688. Published online October 31, 2013; DOI: https://doi.org/10.1007/s12275-013-3411-3

610 View
0 Download
2 Crossref

Abstract PDF

Highly pathogenic avian influenza H5N1 viruses are found chiefly in birds and have caused severe disease and death in infected humans. Development of influenza vaccines capable of inducing heterosubtypic immunity against a broad range of influenza viruses is the best option for the preparedness, since vaccination remains the principal method in controlling influenza viral infections. Here, a mOMV-adjuvanted recombinant H5N2 (rH5N2) whole virus antigen vaccine with A/Environment/Korea/W149/06(H5N1)-derived H5 HA and A/Chicken/Korea/ma116/04(H9N2)-derived N2 NA in the backbone of A/Puerto Rico/8/34(H1N1) was prepared and generated by reverse genetics. Groups of mice were vaccinated by a prime-boost regime with the rH5N2 vaccine (1.75 μg of HA with/without 10 μg mOMV or aluminum hydroxide adjuvant for comparison). At two weeks post-immunizations, vaccinated mice were challenged with lethal doses of 103.5 EID50/ml of H5N1 or H9N2 avian influenza viruses, and were monitored for 15 days. Both mOMV- and alum-adjuvant vaccine groups had high survival rates after H5N1 infection and low levels of body weight changes compared to control groups. Interestingly, the mOMV-adjuvanted group induced better cross-reactive antibody responses serologically and promoted cross-protectivity against H5N1 and H9N2 virus challenges. Our results suggest that mOMV could be used as a vaccine adjuvant in the development of effective vaccines used to control influenza A virus transmission.

Citations

Citations to this article as recorded by

Evaluation of heterosubtypic cross-protection against highly pathogenic H5N1 by active infection with human seasonal influenza A virus or trivalent inactivated vaccine immunization in ferret models
Su-Jin Park, Eun-Ha Kim, Philippe Noriel Q. Pascua, Hyeok-Il Kwon, Gyo-Jin Lim, Arun Decano, Se Mi Kim, Man Ki Song, Eui-Cheol Shin, Young-Ki Choi
Journal of General Virology .2014; 95(4): 793. CrossRef
Assessment of mOMV adjuvant efficacy in the pathogenic H1N1 influenza virus vaccine
Byeong-Jae Lee, Hyeok-il Kwon, Eun-Ha Kim, Su-Jin Park, Sang-Ho Lee, Young Ki Choi, Sang-Hyun Kim
Clinical and Experimental Vaccine Research.2014; 3(2): 194. CrossRef

Research Support, Non-U.S. Gov't

The Anti-influenza Virus Effect of Phellinus igniarius Extract: Sangmoo Lee , Jin Il Kim , Jun Heo , Ilseob Lee , Sehee Park , Min-Woong Hwang , Joon-Yong Bae , Mee Sook Park , Hyoung Jin Park , Man-Seong Park; J. Microbiol. 2013;51(5):676-681. Published online October 31, 2013; DOI: https://doi.org/10.1007/s12275-013-3384-2

1,062 View
0 Download
31 Crossref

Abstract PDF

Herbal medicine has been used in the orient for thousands of years to treat large and small ailments, including microbial infections. Although there are treatments for influenza virus infection, there is no treatment for drug-resistant viruses. It is time that we explored and exploited the multicomponent nature of herbal extracts as multi-drug combination therapies. Here, we present data on the anti-influenza virus effect of a medicinal mushroom, Phellinus igniarius. The P. igniarius water extract was effective against influenza A and B viruses, including 2009 pandemic H1N1, human H3N2, avian H9N2, and oseltamivir-resistant H1N1 viruses. Virological assays revealed that the extract may interfere with one or more early events in the influenza virus replication cycle, including viral attachment to the target cell. Therefore, our results provide new insights into the use of P. igniarius as an anti-influenza medicine.

Citations

Citations to this article as recorded by

Drug Repurposing Approaches for Lassa Virus from Secondary Metabolites of Medicinal Fungi: An Insight from Multifaceted Drug Designing Approaches
Surya Samiya, Singamoorthy Amalraj, Srinivasan Prabhu, Muniappan Ayyanar, Shine Kadaikunnan, Stanislaus Antony Ceasar, Naiyf S Alharbi, Muthu Thiruvengadam, Mohan G. Kalaskar, Shailendra Gurav, Rekha Thiruvengadam
Journal of Computational Biophysics and Chemistry.2026; 25(03): 347. CrossRef
Phellinus igniarius targets HIF1A to regulate HK2 and inhibit metabolic reprogramming in acute myeloid leukemia
Zhongyu Li, Yuanyuan Tan, Zhibin Xie, Guizhen Su, Wei Yao, Guiling Liu, Jiajia Li
Molecular and Cellular Probes.2026; 88: 102072. CrossRef
Research on Sesquiterpenoids from a Marine-Derived Fungus Phellinus sp. HN-22 and Their Anti-inflammatory Activities
Hong Xiao, Yuyue Qin, Shuo Chen, Fuling Cen, Zhuansheng Gao, Wanshan Li, Guangying Chen
Chinese Journal of Organic Chemistry.2025; 45(8): 3033. CrossRef
Phellinus linteus Mycelia Extracts Show Potent Antiviral and Immunomodulatory Effects in H1N1 Influenza Virus-Infected Mice
I-Chen Li, Yi-Lin Chan, Wen-Ting Lu, Lynn-Huey Chiang, Tsung-Ju Li, Tsung-Lin Li, Chin-Chu Chen, Chang-Jer Wu
Foods.2025; 14(23): 4047. CrossRef
Antiviral Activity of Some Compounds of Gasteroid Mushrooms from Western Siberia
Elena V. Makarevich, Tamara V. Teplyakova, Oleg Yu. Mazurkov, Ekaterina I. Filippova, Natalia A. Mazurkova
International Journal of Medicinal Mushrooms.2024; 26(1): 45. CrossRef
Comparative genomics and stable isotope analysis reveal the saprotrophic-pathogenic lifestyle of a neotropical fungus
Luiz Marcelo Ribeiro Tomé, Gabriel Quintanilha-Peixoto, Diogo Henrique Costa-Rezende, Carlos A. Salvador-Montoya, Domingos Cardoso, Daniel S. Araújo, Jorge Marcelo Freitas, Gabriela Bielefeld Nardoto, Genivaldo Alves-Silva, Elisandro Ricardo Drechsler-San
mBio.2024;[Epub] CrossRef
Antiviral properties of lignicolous fungi of Serbia
Zlatan Radulović, Dragan Karadžić, Ivan Milenković, Katarina Mladenović, Jelena Božović
Sustainable Forestry: Collection.2023; (87-88): 197. CrossRef
Medicinal mushrooms: a comprehensive study on their antiviral potential
Mustafa Sevindik, Celal Bal, Emre Cem Eraslan, İmran Uysal, Falah Saleh Mohammed
Prospects in Pharmaceutical Sciences.2023; 21(2): 42. CrossRef
Identification of potential edible mushroom as SARS-CoV-2 main protease inhibitor using rational drug designing approach
Debanjan Sen, Bimal Debnath, Pradip Debnath, Sudhan Debnath, Magdi E. A. Zaki, Vijay H. Masand
Scientific Reports.2022;[Epub] CrossRef
Anti-Gout Effects of the Medicinal Fungus Phellinus igniarius in Hyperuricaemia and Acute Gouty Arthritis Rat Models
Hongxing Li, Xinyue Zhang, Lili Gu, Qín Li, Yue Ju, Xuebin Zhou, Min Hu, Qīn Li
Frontiers in Pharmacology.2022;[Epub] CrossRef
Phenolic compounds of Phellinus spp. with antibacterial and antiviral activities
Francisco Javier Vazquez-Armenta, Juan Manuel Leyva, Veronica Mata-Haro, Gustavo A. Gonzalez-Aguilar, Manuel R. Cruz-Valenzuela, Martin Esqueda, Aldo Gutierrez, Filomena Nazzaro, Florinda Fratianni, Rigoberto Gaitán-Hernández, J. Fernando Ayala-Zavala
Brazilian Journal of Microbiology.2022; 53(3): 1187. CrossRef
Medicinal Fungi with Antiviral Effect
Yu Zhang, Guoying Zhang, Jianya Ling
Molecules.2022; 27(14): 4457. CrossRef
Selected Species of the Genus Phellinus – Chemical Composition, Biological Activity, and Medicinal Applications
Katarzyna Sułkowska‐Ziaja, Monika Balik, Bożena Muszyńska
Chemistry & Biodiversity.2021;[Epub] CrossRef
Preparation and characterization of selenium-rich polysaccharide from Phellinus igniarius and its effects on wound healing
Lujun Luo, Yuxia Wang, Sai Zhang, Li Guo, Guangtao Jia, Weiping Lin, Zhiqin Gao, Yuanyuan Gao, Tongyi Sun
Carbohydrate Polymers.2021; 264: 117982. CrossRef
Prospects for the Development of Anti-Influenza Drugs Based on Medicinal Mushrooms (Review)
T. V. Teplyakova, T. N. Ilyicheva, N. A. Markovich
Applied Biochemistry and Microbiology.2020; 56(5): 489. CrossRef
Laser Mutagenesis of Phellinus igniarius Protoplasts for the Selective Breeding of Strains with High Laccase Activity
Ziping Zhu, Na Li, Wen Li, Junmin Li, Zhengpeng Li, Jinbin Wang, Xueming Tang
Applied Biochemistry and Biotechnology.2020; 190(2): 584. CrossRef
Anti-feline immunodeficiency virus reverse transcriptase properties of some medicinal and edible mushrooms
Supaphorn Seetaha, Siriluk Ratanabunyong, Lueacha Tabtimmai, Kiattawee Choowongkomon, Jatuporn Rattanasrisomporn, Khuanjarat Choengpanya
Veterinary World.2020; 13(9): 1798. CrossRef
Polysaccharide from Phellinus Igniarius activates TLR4-mediated signaling pathways in macrophages and shows immune adjuvant activity in mice
Yi-qi Wang, Jin-bo Mao, Ming-qian Zhou, Ya-wei Jin, Cheng-hua Lou, Yu Dong, Dan Shou, Ying Hu, Bo Yang, Chao-ying Jin, Han-cheng Shi, Hua-jun Zhao, Cheng-ping Wen
International Journal of Biological Macromolecules.2019; 123: 157. CrossRef
Nitrous Acid and Diethyl Sulfate, as Chemical Mutagenic Agents, to Improve the Biomass, Metabolites, Enzyme Activity, and Antioxidant Activity of Wild Phellinus igniarius
Jinjing Guo, Cheng Liu, Caifang Zhang, Jing Wang, Sa Wang, Xiaoxi Liu, Xiaojuan Gao, Xiuli Wu
Food Science and Technology Research.2019; 25(3): 459. CrossRef
Isoquercetin enzymatic production: A true story
Vladimír Křen, Kateřina Valentová
Molecular Catalysis.2018; 458: 112. CrossRef
Medicinal mushroom Phellinus igniarius induced cell apoptosis in gastric cancer SGC-7901 through a mitochondria-dependent pathway
Fei-Fei Wang, Chao Shi, Yue Yang, Yong Fang, Li Sheng, Ning Li
Biomedicine & Pharmacotherapy.2018; 102: 18. CrossRef
Herbal Medicines with Antiviral Activity Against the Influenza Virus, a Systematic Review
Ju-Young Lee, Michael Edward C. Abundo, Chang-Won Lee
The American Journal of Chinese Medicine.2018; 46(08): 1663. CrossRef
Simultaneous Quantification of Antioxidant Compounds in Phellinus igniarius Using Ultra Performance Liquid Chromatography-Photodiode Array Detection-Electrospray Ionization Tandem Mass Spectrometry
Dan Shou, Yu Dong, Nani Wang, Hongyu Li, Yang Zhang, Yan Zhu, Andrew C. Gill
PLOS ONE.2016; 11(9): e0163797. CrossRef
Enhanced biocatalysis mechanism under microwave irradiation in isoquercitrin production revealed by circular dichroism and surface plasmon resonance spectroscopy
An Gong, Dan Zhu, Yi-Yuan Mei, Xiao-Hui Xu, Fu-An Wu, Jun Wang
Bioresource Technology.2016; 205: 48. CrossRef
Isoquercitrin production from rutin catalyzed by naringinase under ultrasound irradiation
Dan Zhu, An Gong, Yan Xu, D’assise Kinfack Tsabing, Fuan Wu, Jun Wang
Journal of Molecular Catalysis B: Enzymatic.2016; 134: 186. CrossRef
Phellinus igniarius: A Pharmacologically Active Polypore Mushroom
Ewa Zapora, Marek Wolkowycki, Slawomir Bakier, Jordan K. Zjawiony
Natural Product Communications.2016;[Epub] CrossRef
Neuraminidase Inhibitors from the Fruiting Body of Phellinus igniarius
Ji-Yul Kim, Dae-Won Kim, Byung Soon Hwang, E-Eum Woo, Yoon-Ju Lee, Kyeong-Woon Jeong, In-Kyoung Lee, Bong-Sik Yun
Mycobiology.2016; 44(2): 117. CrossRef
Purification, characterization and antitumor activity of polysaccharides extracted from Phellinus igniarius mycelia
Shi-Chao Li, Xiao-Ming Yang, Hai-Le Ma, Jing-Kun Yan, Dan-Zhao Guo
Carbohydrate Polymers.2015; 133: 24. CrossRef
Evaluation of the Antioxidant Activities and Tyrosinase Inhibitory Property from Mycelium Culture Extracts
Ki Moon Park, Kyung Min Kwon, Seung Ho Lee
Evidence-Based Complementary and Alternative Medicine.2015; 2015: 1. CrossRef
Antiviral effect of flavonol glycosides isolated from the leaf of Zanthoxylum piperitum on influenza virus
Song-Yi Ha, Hana Youn, Chang-Seon Song, Se Chan Kang, Jong Jin Bae, Hee Tae Kim, Kwang Min Lee, Tae Hoon Eom, In Su Kim, Jong Hwan Kwak
Journal of Microbiology.2014; 52(4): 340. CrossRef
Combination Effects of Peramivir and Favipiravir against Oseltamivir-Resistant 2009 Pandemic Influenza A(H1N1) Infection in Mice
Sehee Park, Jin Il Kim, Ilseob Lee, Sangmoo Lee, Min-Woong Hwang, Joon-Yong Bae, Jun Heo, Donghwan Kim, Seok-Il Jang, Hyejin Kim, Hee Jin Cheong, Jin-Won Song, Ki-Joon Song, Luck Ju Baek, Man-Seong Park, Balaji Manicassamy
PLoS ONE.2014; 9(7): e101325. CrossRef

Research Support, Non-U.S. Gov't

The N3 Subdomain in A Domain of Fibronectin-Binding Protein B Isotype I Is an Independent Risk Determinant Predictive for Biofilm Formation of Staphylococcus aureus Clinical Isolates: An Sung Kwon , Dong Hoon Lim , Hyo Jung Shin , Geon Park , Jong H. Reu , Hyo Jin Park , Jungmin Kim , Yong Lim; J. Microbiol. 2013;51(4):499-505. Published online August 30, 2013; DOI: https://doi.org/10.1007/s12275-013-3319-y

605 View
0 Download
5 Crossref

Abstract PDF

Fibronectin-binding proteins (FnBP), FnBPA and FnBPB, are purported to be involved in biofilm formation of Staphylococcus aureus. This study was performed to find which of three consecutive N subdomains of the A domain in the FnBP is the key domain in FnBP. A total of 465 clinical isolates of S. aureus were examined for the biofilm forming capacity and the presence of N subdomains of FnBP. In the biofilm-positive strains, N2 and N3 subdomains of FnBPA, and N1 and N3 subdomains of FnBPB were significantly more prevalent. Multivariate logistic regression analysis of 246 biofilm-positive and 123 biofilm-negative strains identified only the FnBPB-N3 subdomain as an independent risk determinant predictive for biofilm-positive strains of S. aureus (Odds ratio [OR], 13.174; P<0.001). We also attempted to delete each of the fnbA-N2 and -N3 and fnbB-N1 and -N3 from S. aureus strain 8325-4 and examined the biofilm forming capacity in the derivative mutants. In agreement with the results of the multivariate regression analysis, deletion of either the fnbA-N2 or -N3, or fnbB-N1 did not significantly diminish the capacity of strain 8325-4 to develop a biofilm, while deletion of the fnbB-N3 did. Therefore, it is suggested that the FnBPB-N3 subdomain of isotype I may be a key domain in FnBP which is responsible for the causing biofilm formation in S. aureus clinical isolates.

Citations

Citations to this article as recorded by

Antibiotic susceptibility of Staphylococcus aureus with different degrees of biofilm formation
Hyo-Jung Shin, Sungtae Yang, Yong Lim
Journal of Analytical Science and Technology.2021;[Epub] CrossRef
Reductive evolution of virulence repertoire to drive the divergence between community- and hospital-associated methicillin-resistant Staphylococcus aureus of the ST1 lineage
Marina Farrel Côrtes, Ana Maria N. Botelho, Paula Terra Bandeira, William Mouton, Cedric Badiou, Michèle Bes, Nicholas C. B. Lima, André Elias R. Soares, Rangel C. Souza, Luiz G. P. Almeida, Patricia Martins-Simoes, Ana T. R. Vasconcelos, Marisa F. Nicolá
Virulence.2021; 12(1): 951. CrossRef
Biofilm Formation and Its Relationship with the Molecular Characteristics of Food‐Related Methicillin‐Resistant Staphylococcus aureus (MRSA)
Alberto Vergara, Giovanni Normanno, Pierluigi Di Ciccio, Francesca Pedonese, Roberta Nuvoloni, Antonio Parisi, Gianfranco Santagada, Angelo Colagiorgi, Emanuela Zanardi, Sergio Ghidini, Adriana Ianieri
Journal of Food Science.2017; 82(10): 2364. CrossRef
The role of biofilms in persistent infections and factors involved inica-independent biofilm development and gene regulation inStaphylococcus aureus
Agnes Marie Sá Figueiredo, Fabienne Antunes Ferreira, Cristiana Ossaille Beltrame, Marina Farrel Côrtes
Critical Reviews in Microbiology.2017; 43(5): 602. CrossRef
Protective role of gut commensal microbes against intestinal infections
My Young Yoon, Keehoon Lee, Sang Sun Yoon
Journal of Microbiology.2014; 52(12): 983. CrossRef

Research Support, Non-U.S. Gov't

The Microbial Population in the Air of Cultivation Facility of Oyster Mushrooms: Se Chul Chun , Yu Na Ahn , Sajid Mohamad Khan , Il Min Chung , Hyang Yoen Won , Chang Sung Jhune , Yool Jin Park; J. Microbiol. 2012;50(6):1053-1057. Published online December 30, 2012; DOI: https://doi.org/10.1007/s12275-012-2195-1

605 View
0 Download
11 Crossref

Abstract PDF

The microbial population in the air of mushroom cultivation facility was studied to understand the population structure and size depending on the cultivation methods and regions. The air contents of ten farmers’ oyster mushroom cultivation facilities in Kyunggi province were sampled. The results indicated that there was no difference in population size depending on the regions of mushroom cultivation. In addition, the population size of bacteria in the growth room was bigger than that of the cooling room and outside of the mushroom house, but the fungal population was similar in size between cultivation stages. With regard to population structure, Pseudomonas and Penicillium species were most frequently isolated from the air of oyster mushroom cultivation facility.

Citations

Citations to this article as recorded by

Cold plasma maintains post-harvest quality of oyster mushroom by affecting fungal community and energy metabolism
Yan Wang, Minghao Zhang, Jie Shang, Xueying Gao, Shaimaa Hatab, Ming Cai, Kai Yang
Postharvest Biology and Technology.2026; 231: 113919. CrossRef
Seasonal discrepancy of airborne fungal diversity and community structure in Lentinula edodes factory
Wenbing Gong, Kaixiao Qiu, Zhen Zhuang, Lujun Zhang, Xueqing Liu, Xiao Yu, Yinbing Bian, Yang Xiao
Mycology.2025; 16(1): 344. CrossRef
Effects of Different Bactericides on Yellow Spot Disease of Pleurotus ostreatus
Yazhen Yuan, Haoran Fu, Yufei Lan, Qiqi Chen, Xinrong Li, Hongyan Wang
Agriculture.2024; 14(12): 2352. CrossRef
Exploring the Influence of Culture Environment on the Yield of Volvariella volvacea Based on Microbiomics
Zhu Liu, Jianhao Wang, Linzhi Kang, Yangyang Peng, Luyao Ye, Hui Zhou, Ming Liu
Horticulturae.2024; 10(3): 204. CrossRef
Caffeic acid-grafted chitosan/polylactic acid packaging affects bacterial infestation and volatile flavor of postharvest Agaricus bisporus
Shiqi Bai, Ping Han, Zhicheng Zhou, Ning Ma, Donglu Fang, Wenjian Yang, Qiuhui Hu, Fei Pei
Journal of Food Composition and Analysis.2023; 122: 105504. CrossRef
Bacterial microbiota profiling of oyster mushrooms (Pleurotus ostreatus) based on cultivation methods and distribution channels using high-throughput sequencing
Ga-Hee Ban, Bo-Kyeong Kim, Se-Ri Kim, Min Suk Rhee, Sun Ae Kim
International Journal of Food Microbiology.2022; 382: 109917. CrossRef
Fresh Mushroom Preservation Techniques
Katy Castellanos-Reyes, Ricardo Villalobos-Carvajal, Tatiana Beldarrain-Iznaga
Foods.2021; 10(9): 2126. CrossRef
Waterlogging reduces soil colonization by antagonistic fungi and restores production in Ganoderma lucidum continuous cultivation
Xiaoqing Tong, Hong Jiang, Yue Liang, Yuxin Rao, Li Mei, Yongjun Wang
Crop Protection.2020; 137: 105314. CrossRef
Effects of Oudemansiella radicata polysaccharide on postharvest quality of oyster mushroom (Pleurotus ostreatus) and its antifungal activity against Penicillium digitatum
Qin Liu, Weili Kong, Sujuan Hu, Yuanchun Kang, Yuting Zhang, Tzi Bun Ng
Postharvest Biology and Technology.2020; 166: 111207. CrossRef
Microflora of fresh white button mushrooms (Agaricus bisporus) during cold storage revealed by high‐throughput sequencing and MALDI‐TOF mass spectrometry fingerprinting
Wanwei Qiu, Ying Huang, Chao Zhao, Zhenshan Lin, Wenxing Lin, Zejin Wang
Journal of the Science of Food and Agriculture.2019; 99(9): 4498. CrossRef
Challenges and Opportunities of Airborne Metagenomics
H. Behzad, T. Gojobori, K. Mineta
Genome Biology and Evolution.2015; 7(5): 1216. CrossRef

Research Support, Non-U.S. Gov't

Next-Generation Sequencing-Based Genome-Wide Mutation Analysis of L-Lysine-Producing Corynebacterium glutamicum ATCC 21300 Strain: Chang-Soo Lee , Jae-Young Nam , Eun-Suk Son , O-chul Kwon , Woorijarang Han , Jae-Yong Cho , Young-Jin Park; J. Microbiol. 2012;50(5):860-863. Published online November 4, 2012; DOI: https://doi.org/10.1007/s12275-012-2109-2

672 View
0 Download
9 Crossref

Abstract PDF

In order to identify single nucleotide polymorphism and insertion/deletion mutations, we performed whole-genome re-sequencing of the enhanced L-lysine-producing Corynebacterium glutamicum ATCC 21300 strain. In total, 142 single nucleotide polymorphisms and 477 insertion/deletion mutations were identified in the ATCC 21300 strain when compared to 3,434 predicted genes of the wild-type C. glutamicum ATCC 13032 strain. Among them, 110 transitions and 29 transversions of single nucleotide polymorphisms were found from genes of the ATCC 21300 strain. In addition, 11 genes, involved in the L-lysine biosynthetic pathway and central carbohydrate metabolism, contained mutations including single nucleotide polymorphisms and insertions/deletions. Interestingly, RT-PCR analysis of these 11 genes indicated that they were normally expressed in the ATCC 21300 strain. This information of genome-wide gene-associated variations will be useful for genome breeding of C. glutamicum in order to develop an industrial amino acidproducing strain with minimal mutation.

Citations

Citations to this article as recorded by

Review of the Proteomics and Metabolic Properties of Corynebacterium glutamicum
Juhwan Park, Sooa Lim
Microorganisms.2024; 12(8): 1681. CrossRef
Recent advances in the metabolic engineering and physiological opportunities for microbial synthesis of L-aspartic acid family amino acids: A review
Yusheng Wang, Yunlong Bai, Qi Zeng, Zeyuan Jiang, Yuzhe Liu, Xiyan Wang, Xiaoting Liu, Chunlei Liu, Weihong Min
International Journal of Biological Macromolecules.2023; 253: 126916. CrossRef
Obtaining a series of native gradient promoter-5′-UTR sequences in Corynebacterium glutamicum ATCC 13032
Ning Li, Weizhu Zeng, Sha Xu, Jingwen Zhou
Microbial Cell Factories.2020;[Epub] CrossRef
The BFK20 phage replication origin confers a phage-encoded resistance phenotype to the industrial strain Brevibacterium flavum
Gabriela Bukovska, Jana Ugorcakova, Nora Halgasova, Lucia Bocanova, Adela Tkacova
FEMS Microbiology Letters.2019;[Epub] CrossRef
L-lysine production improvement: a review of the state of the art and patent landscape focusing on strain development and fermentation technologies
Fernanda Karine do Carmo Félix, Luiz Alberto Junior Letti, Gilberto Vinícius de Melo Pereira, Pedro Gabriel Borges Bonfim, Vanete Thomaz Soccol, Carlos Ricardo Soccol
Critical Reviews in Biotechnology.2019; 39(8): 1031. CrossRef
Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids
Junjie Yang, Sheng Yang
BMC Genomics.2017;[Epub] CrossRef
White biotechnology: State of the art strategies for the development of biocatalysts for biorefining
S. Heux, I. Meynial-Salles, M.J. O'Donohue, C. Dumon
Biotechnology Advances.2015; 33(8): 1653. CrossRef
Characterization of a Corynebacterium glutamicum dnaB mutant that shows temperature-sensitive growth and mini-cell formation
Makoto Uchida, Takashi Hirasawa, Masaaki Wachi
Archives of Microbiology.2014; 196(12): 871. CrossRef
Next-generation sequencing-based transcriptome analysis of l-lysine-producing Corynebacterium glutamicum ATCC 21300 strain
Hong-Il Kim, Jae-Young Nam, Jae-Yong Cho, Chang-Soo Lee, Young-Jin Park
Journal of Microbiology.2013; 51(6): 877. CrossRef

Research Support, Non-U.S. Gov't

Biological Control and Plant Growth Promoting Capacity of Rhizobacteria on Pepper under Greenhouse and Field Conditions: Mi-Seon Hahm , Marilyn Sumayo , Ye-Ji Hwang , Seon-Ae Jeon , Sung-Jin Park , Jai Youl Lee , Joon-Hyung Ahn , Byung-Soo Kim , Choong-Min Ryu , Sa-Youl Ghim; J. Microbiol. 2012;50(3):380-385. Published online June 30, 2012; DOI: https://doi.org/10.1007/s12275-012-1477-y

788 View
2 Download
52 Crossref

Abstract PDF

Plant growth promoting rhizobacteria Ochrobactrum lupini KUDC1013 and Novosphingobium pentaromativorans KUDC1065 isolated from Dokdo Island, S. Korea are capable of eliciting induced systemic resistance (ISR) in pepper against bacterial spot disease. The present study aimed to determine whether plant growth-promoting rhizobacteria (PGPR) strains including strain KUDC1013, strain KUDC1065, and Paenibacillus polymyxa E681 either singly or in combinations were evaluated to have the capacity for potential biological control and plant growth promotion effect in the field trials. Under greenhouse conditions, the induced systemic resistance (ISR) effect of treatment with strains KUDC1013 and KUDC1065 differed according to pepper growth stages. Drenching of 3-week-old pepper seedlings with the KUDC-1013 strain significantly reduced the disease symptoms. In contrast, treatment with the KUDC1065 strain significantly protected 5-week-old pepper seedlings. Under field conditions, peppers treated with PGPR mixtures containing E681 and KUDC1013, either in a two-way combination, were showed greater effect on plant growth than those treated with an individual treatment. Collectively, the application of mixtures of PGPR strains on pepper might be considered as a potential biological control under greenhouse and field conditions.

Citations

Citations to this article as recorded by

Tomato seed biopriming: Unveiling molecular mechanisms for enhanced biotic stress management
Mohammed Mennani, Abdelhak Khallou, Mounir EL Ghallouch, Mohamed Kouighat, Said Amiri, Rachid Lahlali
CABI Reviews.2026;[Epub] CrossRef
Comparative Economic Evaluation of Greenhouse Pepper Cultivation Under Conventional and Organic Management
Begoña García Castellanos, Pedro Enrique Fuster Villa, José García García, Felipe Egea Clemente
Agriculture.2026; 16(8): 889. CrossRef
Effect of alfalfa varieties with different resistance to alfalfa Verticillium wilt on microbial communities in rhizosphere soil and plants
Li-Li Zhang, Yan-Zhong Li
Frontiers in Microbiology.2026;[Epub] CrossRef
Deterministic assembly of rhizosphere bacterial community enables predictable and stable suppression of Verticillium wilt via microbial homeostasis
Jiamin Ai, Jiangying Huang, Chenyuan Wang, Xinrui Wang, Yiduo Zhao, Gehong Wei, Zhefei Li
Microbiome.2026;[Epub] CrossRef
Biocontrol potential of indigenous pepper seed Bacillus strains against Xanthomonas euvesicatoria
Tatjana Popović Milovanović, Aleksandra Jelušić, Renata Iličić, Nenad Trkulja, Jelena Damnjanović, Slađan Adžić, Ivana Živković
Pest Management Science.2025; 81(8): 4875. CrossRef
Exploring soil microbial and plant parasitic nematode communities involved in the apple replant disease complex in Nova Scotia
Shawkat Ali, Keith D. Fuller, Svetlana N. Yurgel, Tom Forge, Vicky Lévesque, Mark Mazzola
Scientific Reports.2025;[Epub] CrossRef
Effect of Pseudomonas spp. and Funneliformis mosseae on bacterial spot disease and growth response of pepper
Kamuran Çakar, Ahmet Akköprü, Ceylan Pınar Uçar
Journal of Plant Pathology.2024; 106(4): 1733. CrossRef
Influence of phenotypic variation of Paenibacillus polymyxa E681 on growth promotion in cucumbers
Younmi Lee, Sungmoon Kwon, Kotnala Balaraju, Yongho Jeon
Frontiers in Microbiology.2024;[Epub] CrossRef
The Roles of Plant-Growth-Promoting Rhizobacteria (PGPR)-Based Biostimulants for Agricultural Production Systems
Wenli Sun, Mohamad Hesam Shahrajabian, Ali Soleymani
Plants.2024; 13(5): 613. CrossRef
Influence of growth conditions on an antioxidative system in two bell pepper genotypes differing in susceptibility to phytopathogen bacteria Xanthomonas euvesicatoria
Aleksandra Mesaroš, Marija Nedeljković, Dario Danojević, Sladjana Medić-Pap, Slaviša Stanković, Svetlana Radović, Jelena Lozo
Plant Growth Regulation.2023; 100(3): 609. CrossRef
An Insight into Plant Growth-Promoting Rhizobacteria-Mediated Mitigation of Stresses in Plant
Palakshi Borah, Nirmali Gogoi, Saeed Ahmad Asad, Aparna Jyoti Rabha, Muhammad Farooq
Journal of Plant Growth Regulation.2023; 42(5): 3229. CrossRef
Impact of the endophytic and rhizospheric bacteria on crop development: prospects for advancing climate-smart agriculture
Amzad Hossain, Zahid Hassan, Mehadi Hasan Sohag, Mursalin Khan
Journal of Crop Science and Biotechnology.2023;[Epub] CrossRef
Using Bacteria and Fungi as Plant Biostimulants for Sustainable Agricultural Production Systems
Mohamad Hesam Shahrajabian, Qi Cheng, Wenli Sun
Recent Patents on Biotechnology.2023; 17(3): 206. CrossRef
Microbacterium elymi sp. nov., Isolated from the Rhizospheric Soil of Elymus tsukushiensis, a Plant Native to the Dokdo Islands, Republic of Korea
Ye-Ji Hwang, Soo-Yeong Lee, Jin-Soo Son, Jin-suk Youn, Woong Lee, Jae-Ho Shin, Mi-Hwa Lee, Sa-Youl Ghim
Journal of Microbiology and Biotechnology.2023; 33(2): 188. CrossRef
Rewiring yeast metabolism for producing 2,3-butanediol and two downstream applications: Techno-economic analysis and life cycle assessment of methyl ethyl ketone (MEK) and agricultural biostimulant production
Jae Won Lee, Sarang S. Bhagwat, Nurzhan Kuanyshev, Young B. Cho, Liang Sun, Ye-Gi Lee, Yoel R. Cortés-Peña, Yalin Li, Christopher V. Rao, Jeremy S. Guest, Yong-Su Jin
Chemical Engineering Journal.2023; 451: 138886. CrossRef
Sustainable Management of Diseases in Horticulture: Conventional and New Options
Marco Scortichini
Horticulturae.2022; 8(6): 517. CrossRef
Polymyxin B1 and E2 From Paenibacillus polymyxa Y-1 for Controlling Rice Bacterial Disease
Wenshi Yi, Chao Chen, Xiuhai Gan
Frontiers in Cellular and Infection Microbiology.2022;[Epub] CrossRef
Using fermentation waste of ethanol-producing yeast for bacterial riboflavin production and recycling of spent bacterial mass for enhancing the growth of oily plants
Shymaa Ryhan Bashandy, Mohamed Hemida Abd-Alla, Ghada Abd-Elmonsef Mahmoud
Journal of Applied Microbiology.2022; 132(3): 2020. CrossRef
Plant Associated Rhizobacteria for Biocontrol and Plant Growth Enhancement
Xiurong Jiao, Yoko Takishita, Guisheng Zhou, Donald L. Smith
Frontiers in Plant Science.2021;[Epub] CrossRef
Serratia rhizosphaerae sp. nov., a novel plant resistance inducer against soft rot disease in tobacco
Jin-Soo Son, Ye-Ji Hwang, Soo-Yeong Lee, Sa-Youl Ghim
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
Interactions Between Bacillus Spp., Pseudomonas Spp. and Cannabis sativa Promote Plant Growth
Dominique Comeau, Carole Balthazar, Amy Novinscak, Nadia Bouhamdani, David L. Joly, Martin Filion
Frontiers in Microbiology.2021;[Epub] CrossRef
The long-term colonization dynamics of endophytic bacteria in cucumber plants, and their effects on yield, fruit quality and Angular Leaf Spot Disease
Ahmet Akköprü, Şahika Akat, Hatice Özaktan, Ayşe Gül, Mustafa Akbaba
Scientia Horticulturae.2021; 282: 110005. CrossRef
Paenibacillus polymyxa, a Jack of all trades
Sarah Langendries, Sofie Goormachtig
Environmental Microbiology.2021; 23(10): 5659. CrossRef
Seed biopriming with antagonistic microbes and ascorbic acid induce resistance in tomato against Fusarium wilt
Prachi Singh, Jyoti Singh, Shatrupa Ray, Rahul Singh Rajput, Anukool Vaishnav, Rakesh Kumar Singh, Harikesh Bahadur Singh
Microbiological Research.2020; 237: 126482. CrossRef
Exploring microbial determinants of apple replant disease (ARD): a microhabitat approach under split-root design
Alicia Balbín-Suárez, Maik Lucas, Doris Vetterlein, Søren J Sørensen, Traud Winkelmann, Kornelia Smalla, Samuel Jacquiod
FEMS Microbiology Ecology.2020;[Epub] CrossRef
Biological function of Klebsiella variicola and its effect on the rhizosphere soil of maize seedlings
Lijuan Yang, Kejun Yang
PeerJ.2020; 8: e9894. CrossRef
Secretion dynamics of soyasaponins in soybean roots and effects to modify the bacterial composition
Teruhisa Fujimatsu, Keiji Endo, Kazufumi Yazaki, Akifumi Sugiyama
Plant Direct.2020;[Epub] CrossRef
Exploration of microbial stimulants for induction of systemic resistance in plant disease management
Olumayowa Mary Olowe, Akinlolu Olalekan Akanmu, Michael Dare Asemoloye
Annals of Applied Biology.2020; 177(3): 282. CrossRef
Temporal Dynamics of the Sap Microbiome of Grapevine Under High Pierce’s Disease Pressure
Elizabeth Deyett, Philippe E. Rolshausen
Frontiers in Plant Science.2019;[Epub] CrossRef
Engineering root microbiomes for healthier crops and soils using beneficial, environmentally safe bacteria
Pilar Martínez-Hidalgo, Maskit Maymon, Flora Pule-Meulenberg, Ann M. Hirsch
Canadian Journal of Microbiology.2019; 65(2): 91. CrossRef
Full Issue PDF

Phytobiomes Journal.2019; 3(2): 82. CrossRef
Microbiota Associated with Sclerotia of Soilborne Fungal Pathogens – A Novel Source of Biocontrol Agents Producing Bioactive Volatiles
Pascal Mülner, Alessandro Bergna, Philipp Wagner, Dženana Sarajlić, Barbara Gstöttenmayr, Kristin Dietel, Rita Grosch, Tomislav Cernava, Gabriele Berg
Phytobiomes Journal.2019; 3(2): 125. CrossRef
Plant growth promoting bacteria increases biomass, effective constituent, and modifies rhizosphere bacterial communities of Panax ginseng
Wenxiu Ji, Xue Leng, Zhengxun Jin, Hulin Li
Acta Agriculturae Scandinavica, Section B — Soil & Plant Science.2019; 69(2): 135. CrossRef
Ochrobactrum ciceri mediated induction of defence genes and antifungal metabolites enhance the biocontrol efficacy for the management of Botrytis leaf blight of Lilium under protected conditions
Rajendran Priyanka, Sevugapperumal Nakkeeran
Journal of Plant Pathology.2019; 101(2): 323. CrossRef
Chronicle of a Soil Bacterium: Paenibacillus polymyxa E681 as a Tiny Guardian of Plant and Human Health
Haeyoung Jeong, Soo-Keun Choi, Choong-Min Ryu, Seung-Hwan Park
Frontiers in Microbiology.2019;[Epub] CrossRef
Complexity of bacterial communities within the rhizospheres of legumes drives phenanthrene degradation
Shuo Jiao, Qiaoping Li, Xiaoyu Zai, Xuee Gao, Gehong Wei, Weimin Chen
Geoderma.2019; 353: 1. CrossRef
Effects of Endophytic Bacteria on Disease and Growth in Plants under Biotic Stress
Ahmet AKKÖPRÜ, Kamuran ÇAKAR, Ahmad HUSSEINI
Yüzüncü Yıl Üniversitesi Tarım Bilimleri Dergisi.2018; 28(2): 200. CrossRef
Investigating the Role of Endophytic Fungi in Gentiana scabra bge. by Cross-Growth Period Inoculation
Dongmei Wang, Huan Wang, Jing Li, Wei Zhang, Yingni Pan, Xiaoqiu Liu
Indian Journal of Microbiology.2018; 58(3): 319. CrossRef
A strategy for securing unique microbial resources – focusing on Dokdo islands-derived microbial resources
Jong Myong Park, Ji Won Hong, Jin-Soo Son, Ye-Ji Hwang, Hyun-Min Cho, Young-Hyun You, Sa-Youl Ghim
Israel Journal of Ecology and Evolution.2018; 64(1-4): 1. CrossRef
Foliar application of the leaf-colonizing yeast Pseudozyma churashimaensis elicits systemic defense of pepper against bacterial and viral pathogens
Gahyung Lee, Sang-Heon Lee, Kyung Mo Kim, Choong-Min Ryu
Scientific Reports.2017;[Epub] CrossRef
Bottlenecks in commercialisation and future prospects of PGPR
Bushra Tabassum, Anwar Khan, Muhammad Tariq, Memoona Ramzan, Muhammad Saleem Iqbal Khan, Naila Shahid, Khadija Aaliya
Applied Soil Ecology.2017; 121: 102. CrossRef
Comparative study of rhizobacterial communities in pepper greenhouses and examination of the effects of salt accumulation under different cropping systems
Mi-Seon Hahm, Jin-Soo Son, Byung-Soo Kim, Sa-Youl Ghim
Archives of Microbiology.2017; 199(2): 303. CrossRef
Multifaceted Rhizobacteria-Mediated Growth Augmentation in Chickpea
Poonam Kumari, Veena Khanna, Prafull Kumar
Agricultural Research.2017; 6(4): 368. CrossRef
Interactions of plant growth-promoting rhizobacteria and soil factors in two leguminous plants
Xiao Xiao, Miaochun Fan, Entao Wang, Weimin Chen, Gehong Wei
Applied Microbiology and Biotechnology.2017; 101(23-24): 8485. CrossRef
Sweet scents from good bacteria: Case studies on bacterial volatile compounds for plant growth and immunity
Joon-hui Chung, Geun Cheol Song, Choong-Min Ryu
Plant Molecular Biology.2016; 90(6): 677. CrossRef
Impact of a Bacterial Volatile 2,3-Butanediol on Bacillus subtilis Rhizosphere Robustness
Hwe-Su Yi, Yeo-Rim Ahn, Geun C. Song, Sa-Youl Ghim, Soohyun Lee, Gahyung Lee, Choong-Min Ryu
Frontiers in Microbiology.2016;[Epub] CrossRef
Rhizospheric changes of fungal and bacterial communities in relation to soil health of multi-generation apple orchards
F. Caputo, F. Nicoletti, F. De Luca Picione, L.M. Manici
Biological Control.2015; 88: 8. CrossRef
Paenibacillus dongdonensis sp. nov., isolated from rhizospheric soil of Elymus tsukushiensis
Jin-Soo Son, Hyun-Uk Kang, Sa-Youl Ghim
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_8): 2865. CrossRef
Biological control of bacterial spot disease and plant growth-promoting effects of lactic acid bacteria on pepper
Anupama Shrestha, Beom Seok Kim, Duck Hwan Park
Biocontrol Science and Technology.2014; 24(7): 763. CrossRef
Biological control of bacterial wilt of common bean by plant growth-promoting rhizobacteria
Samuel Julio Martins, Flavio Henrique Vasconcelos de Medeiros, Ricardo Magela de Souza, Mário Lúcio Vilela de Resende, Pedro Martins Ribeiro
Biological Control.2013; 66(1): 65. CrossRef
Controlling crop diseases using induced resistance: challenges for the future
Dale R. Walters, Jaan Ratsep, Neil D. Havis
Journal of Experimental Botany.2013; 64(5): 1263. CrossRef
Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1
Ben Niu, Joachim Vater, Christian Rueckert, Jochen Blom, Maik Lehmann, Jin-Jiang Ru, Xiao-Hua Chen, Qi Wang, Rainer Borriss
BMC Microbiology.2013;[Epub] CrossRef

Research Support, Non-U.S. Gov't

Oceanobacillus kimchii sp. nov. Isolated from a Traditional Korean Fermented Food: Tae Woong Whon , Mi-Ja Jung , Seong Woon Roh , Young-Do Nam , Eun-Jin Park , Kee-Sun Shin , Jin-Woo Bae; J. Microbiol. 2010;48(6):862-866. Published online January 9, 2011; DOI: https://doi.org/10.1007/s12275-010-0214-7

805 View
0 Download
33 Crossref

Abstract PDF

A moderate halophile, strain X50T, was isolated from mustard kimchi, a traditional Korean fermented food. The organism grew under conditions ranging from 0-15.0% (w/v) NaCl (optimum: 3.0%), pH 7.0-10.0 (optimum: pH 9.0) and 15-45°C (optimum: 37°C). The morphological, physiological, and biochemical features and the 16S rRNA gene sequences of strain X50T were characterized. Colonies of the isolate were creamcolored and the cells were rod-shaped. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain X50T belongs to the genus Oceanobacillus and is closely related phylogenetically to the type strain O. iheyensis HTE831T (98.9%) and O. oncorhynchi subsp. oncorhynchi R-2T (97.0%). The cellular fatty acid profiles predominately included anteiso-C15:0 and iso-C15:0. The G+C content of the genomic DNA of the isolate was 37.9 mol% and the major isoprenoid quinone was MK-7. Analysis of the 16S rRNA gene sequences, DNA-DNA relatedness and physiological and biochemical tests indicated genotypic and phenotypic differences among strain X50T and reference species in the genus Oceanobacillus. Therefore, strain X50T was proposed as a novel species and named Oceanobacillus kimchii. The type strain of the new species is X50T (=JCM 16803T =KACC 14914T =DSM 23341T).

Citations

Citations to this article as recorded by

Rational design of fermented mustard tuber quality: Transitioning from empirical processing to precision control via texture-flavor synergy and targeted fermentation strategies
Wenxin Chen, Xiaoli Qin, Pingping Shi, Jinfeng Zhong
Trends in Food Science & Technology.2026; 169: 105570. CrossRef
Oceanobacillus in high-temperature Daqu: Taxonomic diversity, metabolic characteristics and biofortification effect
Xu Liu, Jun-Jie Fu, Han-Jun Shen, Li-Juan Chai, Xiao-Juan Zhang, Hong-Yu Xu, Song-Tao Wang, Su-Yi Zhang, Cai-Hong Shen, Jin-Song Shi, Zhen-Ming Lu, Zheng-Hong Xu
Process Biochemistry.2025; 150: 68. CrossRef
Integrated 16S rDNA, UPLC-MS, and GC-MS analyses to investigate the effects of roasted-rice leachate fermentation on flavor formation in cigar tobacco leaves
Mengjuan Ren, Yuanyuan Zhao, Tian Zhou, Ruina Zhang, Jiayi Li, Lanyue Zhang, Yanqing Qin, Hongzhi Shi
Food Bioscience.2025; 73: 107723. CrossRef
Unveiling the microbiome during post-partum uterine infection: a deep shotgun sequencing approach to characterize the dairy cow uterine microbiome
Carl Basbas, Adriana Garzon, Cory Schlesener, Machteld van Heule, Rodrigo Profeta, Bart C. Weimer, Noelia Silva-del-Rio, Barbara A. Byrne, Betsy Karle, Sharif S. Aly, Fabio S. Lima, Richard V. Pereira
Animal Microbiome.2023;[Epub] CrossRef
Phenotypic characteristics, phylogenetic analysis and characterization of alkaline proteases of marine bacteria Geomicrobium halophilum, Oceanobacillus oncorhynchi, and Oceanobacillus khimchii
Vikram H. Raval, Rupal H. Joshi, Hitarth B. Bhatt, Satya P. Singh
Biologia.2022; 77(8): 2405. CrossRef
Draft Genome Sequence of Oceanobacillus jordanicus Strain GSFE11, a Halotolerant Plant Growth-Promoting Bacterial Endophyte Isolated From the Jordan Valley
Tareq Alhindi, Randa Albdaiwi
Evolutionary Bioinformatics.2022;[Epub] CrossRef
First Case of Bacteremia and Epididymo-orchitis Caused by Oceanobacillus oncorhynchi subspecies incaldanensis in an Immunocompetent Patient
Mutbyul Kim, Jae Hwi Choi, Hyoshim Shin, Woo Kon Lee, Jung-Hyun Byun
Annals of Laboratory Medicine.2022; 42(2): 290. CrossRef
Oceanobacillus alkalisoli sp. nov., an alkaliphilic bacterium isolated from saline-alkaline soil
Pin-Jiao Jin, Lei Sun, Manik Prabhu Narsing Rao, Jian-Yu Jiao, Xiu-Jun Sun, Wen-Jun Li, Shuang Wang
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
ODFM, an omics data resource from microorganisms associated with fermented foods
Tae Woong Whon, Seung Woo Ahn, Sungjin Yang, Joon Yong Kim, Yeon Bee Kim, Yujin Kim, Ji-Man Hong, Hojin Jung, Yoon-E Choi, Se Hee Lee, Seong Woon Roh
Scientific Data.2021;[Epub] CrossRef
Actinomyces wuliandei sp. nov., Corynebacterium liangguodongii sp. nov., Corynebacterium yudongzhengii sp. nov. and Oceanobacillus zhaokaii sp. nov., isolated from faeces of Tibetan antelope in the Qinghai-Tibet plateau of China
Wentao Zhu, Junqin Li, Xiaoxia Wang, Jing Yang, Shan Lu, Xin-He Lai, Dong Jin, Yuyuan Huang, Sihui Zhang, Ji Pu, Juan Zhou, Zhihong Ren, Ying Huang, Xiaomin Wu, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology .2020; 70(6): 3763. CrossRef
Two novel species of the family Bacillaceae: Oceanobacillus piezotolerans sp. nov. and Bacillus piezotolerans sp. nov., from deep-sea sediment samples of Yap Trench
Libo Yu, Xixiang Tang, Shiping Wei, Yinkun Qiu, Xiashutong Xu, Guangxin Xu, Qilin Wang, Qian Yang
International Journal of Systematic and Evolutionary Microbiology.2019; 69(10): 3022. CrossRef
Oceanobacillus timonensis sp. nov. and Oceanobacillus senegalensis sp. nov., two new moderately halophilic, Gram-stain positive bacteria isolated from stools sample of healthy young Senegalese
Bruno Senghor, Hubert Bassène, Saber Khelaifia, Catherine Robert, Pierre-Edouard Fournier, Raymond Ruimy, Cheikh Sokhna, Didier Raoult, Jean-Christophe Lagier
Antonie van Leeuwenhoek.2019; 112(5): 785. CrossRef
Characterizing the metabolites and the microbial communities of the soy sauce mash affected by temperature and hydrostatic pressure
Ru Liang, Jun Huang, Xueming Wu, Yi Xu, Jun Fan, Chongde Wu, Yao Jin, Rongqing Zhou
Food Research International.2019; 123: 801. CrossRef
Microbial communities and their predicted metabolic functions in a desiccating acid salt lake
Elena Zaikova, Kathleen C. Benison, Melanie R. Mormile, Sarah Stewart Johnson
Extremophiles.2018; 22(3): 367. CrossRef
Microbial Culturomics to Map Halophilic Bacterium in Human Gut: Genome Sequence and Description of Oceanobacillus jeddahense sp. nov.
Saber Khelaifia, Jean-Christophe Lagier, Fehmida Bibi, Esam Ibraheem Azhar, Olivier Croce, Roshan Padmanabhan, Asif Ahmad Jiman-Fatani, Muhammad Yasir, Catherine Robert, Claudia Andrieu, Pierre-Edouard Fournier, Didier Raoult
OMICS: A Journal of Integrative Biology.2016; 20(4): 248. CrossRef
Draft Genome Sequence of an Oceanobacillus sp. Strain Isolated from Soil in a Burial Crypt
Ilargi Martínez-Ballesteros, Ylenia Arizaga, Joseba Bikandi, Javier Garaizar, Giulia Ganau, Bianca Paglietti, Manuela Murgia, Massimo Deligios, Salvatore Rubino
Genome Announcements.2016;[Epub] CrossRef
Oceanobacillus halophilus sp. nov., a novel moderately halophilic bacterium from a hypersaline lake
Mohammad Ali Amoozegar, Maryam Bagheri, Ali Makhdoumi, Mahdi Moshtaghi Nikou, Seyed Abolhassan Shahzadeh Fazeli, Peter Schumann, Cathrin Spröer, Cristina Sánchez-Porro, Antonio Ventosa
International Journal of Systematic and Evolutionary Microbiology .2016; 66(3): 1317. CrossRef
Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut
Jean-Christophe Lagier, Saber Khelaifia, Esam Ibraheem Azhar, Olivier Croce, Fehmida Bibi, Asif Ahmad Jiman-Fatani, Muhammad Yasir, Huda Ben Helaby, Catherine Robert, Pierre-Edouard Fournier, Didier Raoult
Standards in Genomic Sciences.2015;[Epub] CrossRef
Oceanobacillus arenosus sp. nov., a moderately halophilic bacterium isolated from marine sand
Wonyong Kim, Chatuphon Siamphan, Jong-Hwa Kim, Ampaitip Sukhoom
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_9): 2943. CrossRef
Oceanobacillus bengalensis sp. nov., a bacterium isolated from seawater of the Bay of Bengal
Ouyang Yongchang, Wenzhou Xiang, Guanghua Wang
Antonie van Leeuwenhoek.2015; 108(5): 1189. CrossRef
Oceanobacillus damuensis sp. nov. and Oceanobacillus rekensis sp. nov., isolated from saline alkali soil samples
Xiufeng Long, Renyuan Ye, Shuai Zhang, Bo Liu, Yuqin Zhang, Zhigang Zeng, Yongqiang Tian
Antonie van Leeuwenhoek.2015; 108(3): 731. CrossRef
Oceanobacillus limi sp. nov., a moderately halophilic bacterium from a salt lake
Mohammad Ali Amoozegar, Maryam Bagheri, Ali Makhdoumi-Kakhki, Maryam Didari, Peter Schumann, Cathrin Spröer, Cristina Sánchez-Porro, Antonio Ventosa
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_4): 1284. CrossRef
Oceanobacillus-like bacterium isolated from Vyhna travertine spring
P. Pristas, M. Cunderlikova, J. Judova
Folia Microbiologica.2014; 59(2): 141. CrossRef
Oceanobacillus gochujangensis sp. nov., isolated from gochujang a traditional Korean fermented food
Seo-Jung Jang, Yu-Jin Kim, Sul-Hee Lee, Young-Seo Park, Jung-Min Park, Dong-Hoon Bai
Journal of Microbiology.2014; 52(12): 1050. CrossRef
Oceanobacillus pacificus sp. nov., isolated from a deep-sea sediment
Cong Yu, Shaolan Yu, Zenghu Zhang, Zhao Li, Xiao-Hua Zhang
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_4): 1278. CrossRef
Oceanobacillus luteolus sp. nov., isolated from soil
Min Wu, Guiqin Yang, Zhen Yu, Li Zhuang, Yingqiang Jin, Shungui Zhou
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_5): 1495. CrossRef
Evolution in the Bacillaceae
Patricia Fajardo-Cavazos, Heather Maughan, Wayne L. Nicholson, Patrick Eichenberger, Adam Driks
Microbiology Spectrum.2014;[Epub] CrossRef
Oceanobacillus polygoni sp. nov., a facultatively alkaliphile isolated from indigo fermentation fluid
Kikue Hirota, Yoshiko Hanaoka, Yoshinobu Nodasaka, Isao Yumoto
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_9): 3307. CrossRef
Oceanobacillus indicireducens sp. nov., a facultative alkaliphile that reduces an indigo dye
Kikue Hirota, Kenichi Aino, Yoshinobu Nodasaka, Isao Yumoto
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_4): 1437. CrossRef
Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov.
Véronique Roux, Matthieu Million, Catherine Robert, Alix Magne, Didier Raoult
Standards in Genomic Sciences.2013; 9(2): 370. CrossRef
Oceanobacillus chungangensis sp. nov., isolated from a sand dune
Dong Chae Lee, Hyeonji Kang, Veeraya Weerawongwiwat, Beomjoon Kim, Young-Wan Choi, Wonyong Kim
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_10): 3666. CrossRef
Naturally Occurring Culturable Aerobic Gut Flora of Adult Phlebotomus papatasi, Vector of Leishmania major in the Old World
Jaba Mukhopadhyay, Henk R. Braig, Edgar D. Rowton, Kashinath Ghosh, Markus M. Heimesaat
PLoS ONE.2012; 7(5): e35748. CrossRef
List of new names and new combinations previously effectively, but not validly, published

International Journal of Systematic and Evolutionary Microbiology .2011; 61(5): 1011. CrossRef

Research Support, Non-U.S. Gov't

Inhibitory Effect of the Essential Oil from Chamaecyparis obtusa on the Growth of Food-Borne Pathogens: Mi-Jin Park , Won-Sil Choi , Ha-Young Kang , Ki-Seob Gwak , Geun-Shik Lee , Eui-Bae Jeung , In-Gyu Choi; J. Microbiol. 2010;48(4):496-501. Published online August 20, 2010; DOI: https://doi.org/10.1007/s12275-010-9327-2

892 View
0 Download
17 Crossref

Abstract PDF

In this study, the antibacterial activity of essential oil from Chamaecyparis obtusa (Sieb. et Zucc) leaves and twigs was investigated. The test strains were Klebsiella pneumoniae, Listeria monocytogenes, Salmonella typhimurium, Staphylococcus aureus, Escherichia coli, Legionella pneumophila, and Methicilline-resistant Staphylococcus aureus. Antibacterial activity was estimated by measuring bacterial growth inhibition. Histopathological examination was also performed. C. obtusa oil distinctly inhibited the growth of all test strains and exhibited the strongest antibacterial activity against L. monocytogenes. It was chromatographically divided into several fractions. The fractions were further tested against antibacterial activity and their chemical compositions were analyzed. The fraction containing terpinen-4-ol (TA) showed high antibacterial activity toward all strains tested. Tests with authentic samples showed that TA played a major role in the antibacterial activity of C. obtusa oil, and in a mice test, the oil actively minimized inflammation by S. aureus.

Citations

Citations to this article as recorded by

Elucidating the antibacterial effect of terpinen-4-ol against Listeria monocytogenes and evaluating its efficacy in lettuce preservation via fumigation
Xingsai Liu, Cunjian Tu, Kun Kang, Di Chen, Yang Lei, Yaolei Zhang, Kashif Iqbal Sahibzada, Shan Wei, Yangyong Lv, Yuansen Hu, Liang Huang
International Journal of Food Microbiology.2026; 446: 111544. CrossRef
The Precious Potential of the Sacred Tree Chamaecyparis obtusa (Siebold & Zucc.) Endl. as a Source of Secondary Metabolites with Broad Biological Applications
Karol Maksymilian Górski, Tomasz Kowalczyk, Laurent Picot, Patricia Rijo, Mansour Ghorbanpour, Przemysław Sitarek
International Journal of Molecular Sciences.2024; 25(5): 2723. CrossRef
Phytochemical-Based Nanoantioxidants Stabilized with Polyvinylpyrrolidone for Enhanced Antibacterial, Antioxidant, and Anti-Inflammatory Activities
Hyeryeon Oh, Jin Sil Lee, Hyojung Park, Panmo Son, Byoung Seung Jeon, Sang Soo Lee, Daekyung Sung, Jong-Min Lim, Won Il Choi
Antioxidants.2024; 13(9): 1056. CrossRef
Cell Extracts Derived from Cypress and Cedar Show Antiviral Activity against Enveloped Viruses
Takashi Furukawa, Ayumu Inagaki, Takeshi Hatta, Suzuha Moroishi, Katsuki Kawanishi, Yuki Itoh, Shotaro Maehana, Mohan Amarasiri, Kazunari Sei
Microorganisms.2024; 12(9): 1813. CrossRef
Antibacterial and virucidal activity of 28 extracts from plants endemic to Korea against Bacillus cereus, Staphylococcus aureus, and murine norovirus
Hyun-Joo Chang, Ji Hye Han, Nari Lee, Sung-Wook Choi
Journal of Applied Biological Chemistry.2023;[Epub] CrossRef
Preparation of Green Anti-Staphylococcus aureus Inclusion Complexes Containing Hinoki Essential Oil
Peifu Kong, Kotchaporn Thangunpai, Ainun Zulfikar, Shunsuke Masuo, Junichi Peter Abe, Toshiharu Enomae
Foods.2023; 12(16): 3104. CrossRef
Terpinen-4-ol, the Main Bioactive Component of Tea Tree Oil, as an Innovative Antimicrobial Agent against Legionella pneumophila
Francesca Mondello, Stefano Fontana, Maria Scaturro, Antonietta Girolamo, Marisa Colone, Annarita Stringaro, Maura Di Vito, Maria Luisa Ricci
Pathogens.2022; 11(6): 682. CrossRef
Impact of Hinoki Cypress Wood on Diversity of Microflora: A Case Study from Owase City Hall
Daisuke Tanaka, Daisuke Uei, Jun Matsui, Masahiro Matsunaga, Masaaki Morimoto, Fumito Maruyama
Diversity.2021; 13(10): 473. CrossRef
Potential Role of Plant Extracts and Phytochemicals Against Foodborne Pathogens
Farhat Ullah, Muhammad Ayaz, Abdul Sadiq, Farman Ullah, Ishtiaq Hussain, Muhammad Shahid, Zhanibek Yessimbekov, Anjana Adhikari-Devkota, Hari Prasad Devkota
Applied Sciences.2020; 10(13): 4597. CrossRef
In Vivo and In Vitro Study on the Efficacy of Terpinen-4-ol in Dextran Sulfate Sodium-Induced Mice Experimental Colitis
Zecai Zhang, Peng Shen, Xiaojie Lu, Yanxin Li, Jiuxi Liu, Bo Liu, Yunhe Fu, Yongguo Cao, Naisheng Zhang
Frontiers in Immunology.2017;[Epub] CrossRef
In Vivo Study of the Efficacy of the Essential Oil of Zanthoxylum bungeanum Pericarp in Dextran Sulfate Sodium-Induced Murine Experimental Colitis
Zecai Zhang, Peng Shen, Jiuxi Liu, Cong Gu, Xiaojie Lu, Yanxin Li, Yongguo Cao, Bo Liu, Yunhe Fu, Naisheng Zhang
Journal of Agricultural and Food Chemistry.2017; 65(16): 3311. CrossRef
Inhibition of litter decomposition of two emergent macrophytes by addition of aromatic plant powder
Ya-jun Xie, Yong-hong Xie, Hua-yun Xiao, Zheng-miao Deng, Ying Pan, Bai-han Pan, Jia-yu Hu
Scientific Reports.2017;[Epub] CrossRef
Activity of Six Essential Oils Extracted from Tunisian Plants against Legionella pneumophila
Naouel Chaftar, Marion Girardot, Nathalie Quellard, Jérôme Labanowski, Tawfik Ghrairi, Khaled Hani, Jacques Frère, Christine Imbert
Chemistry & Biodiversity.2015; 12(10): 1565. CrossRef
Physiological effect of olfactory stimulation by Hinoki cypress (Chamaecyparis obtusa) leaf oil
Harumi Ikei, Chorong Song, Yoshifumi Miyazaki
Journal of Physiological Anthropology.2015;[Epub] CrossRef
Melaleuca alternifolia Concentrate Inhibits in Vitro Entry of Influenza Virus into Host Cells
Xinghua Li, Songwei Duan, Cordia Chu, Jun Xu, Gucheng Zeng, Alfred Lam, Junmei Zhou, Yue Yin, Danyun Fang, Maxwell Reynolds, Huaiyu Gu, Lifang Jiang
Molecules.2013; 18(8): 9550. CrossRef
Antifungal and Antibacterial Activity of the Essential Oil of Chamaecyparis Lawsoniana from Spain
Jesús Palá-Paúl, Jaime Usano-Alemany, Elena Granda, Ana-Cristina Soria
Natural Product Communications.2012;[Epub] CrossRef
Antimicrobial Effect of Various Chopping Boards against Food-borne Bacteria
Ji-Young Kim, Hyoung-Jae Lee, Jeong-Yong Cho, Hyun-Cheol Lim, Gyeong-Cheol Choi, Du-Woon Kim, Keun-Hyung Park, Jae-Hak Moon
Korean Journal of Food Science and Technology.2012; 44(1): 114. CrossRef

Research Support, Non-U.S. Gov't

Application of Quantitative Real-Time PCR for Enumeration of Total Bacterial, Archaeal, and Yeast Populations in Kimchi: Eun-Jin Park , Ho-Won Chang , Kyoung-Ho Kim , Young-Do Nam , Seong Woon Roh , Jin-Woo Bae; J. Microbiol. 2009;47(6):682-685. Published online February 4, 2010; DOI: https://doi.org/10.1007/s12275-009-0297-1

626 View
1 Download
33 Crossref

Abstract PDF

Kimchi is a Korean traditional fermented food made of brined vegetables, with a variety of spices. Various microorganisms are associated with the kimchi fermentation process. This study was undertaken in order to apply quantitative real-time PCR targeting the 16S and 26S rRNA genes for the investigation of dynamics of bacterial, archaeal, and yeast communities during fermentation of various types of kimchi. Although the total bacterial and archaeal rRNA gene copy numbers increased during kimchi fermentation, the number of yeasts was not significantly altered. In 1 ng of bulk DNA, the mean number of rRNA gene copies for all strains of bacteria was 5.45×106 which was 360 and 50 times greater than those for archaea and yeast, respectively. The total gene copy number for each group of microorganisms differed among the different types of kimchi, although the relative ratios among them were similar. The common dominance of bacteria in the whole microbial communities of various types of kimchi suggests that bacteria play a principal role in the kimchi fermentation process.

Citations

Citations to this article as recorded by

Characterization of Microbes Involved in Anaerobic Fermentation of Various Jiaosu
Ying Wang, Shuo Feng, Shi-min Liu, Zhi-sheng Zheng, Ling-xiao Wang, Xiu-fang Hu, Mattia Spano
International Journal of Food Science.2025;[Epub] CrossRef
Linking the edible plant microbiome and human gut microbiome
Gabriele Berg, Gerardo V. Toledo, Jasper Schierstaedt, Heikki Hyöty, Wisnu Adi Wicaksono
Gut Microbes.2025;[Epub] CrossRef
Effects of pretreated garlic on bacterial composition and metabolite profiles during kimchi fermentation
Yun-Jeong Choi, Ju Young Lim, Da-Yeong Ko, Kang-Mo Ku, Min Jung Lee, Sung Jin Park, Ji-Hee Yang, Young Bae Chung, Sung Hee Park, Sung Gi Min, Mi-Ai Lee
LWT.2024; 193: 115772. CrossRef
The future is fermented: Microbial biodiversity of fermented foods is a critical resource for food innovation and human health
Rodrigo Hernández-Velázquez, Lena Flörl, Anton Lavrinienko, Zuzana Sebechlebská, Liana Merk, Anna Greppi, Nicholas A. Bokulich
Trends in Food Science & Technology.2024; 150: 104569. CrossRef
Microbial communities of a variety of 75 homemade fermented vegetables
Anne Thierry, Marie-Noelle Madec, Victoria Chuat, Anne-Sophie Bage, Olivier Picard, Cécile Grondin, Olivier Rué, Mahendra Mariadassou, Laurent Marché, Florence Valence
Frontiers in Microbiology.2023;[Epub] CrossRef
Long-term population dynamics of viable microbes in a closed ecosystem of fermented vegetables
Joon Yong Kim, Seong-Eun Park, Eun-Ju Kim, Seung-Ho Seo, Tae Woong Whon, Kwang-Moon Cho, Sun Jae Kwon, Seong Woon Roh, Hong-Seok Son
Food Research International.2022; 154: 111044. CrossRef
Fermentation dynamics of spontaneously fermented Ethiopian honey wine, Tej
Eskindir Getachew Fentie, Minsoo Jeong, Shimelis Admassu Emire, Hundessa Dessalegn Demsash, Min A. Kim, Jae-Ho Shin
LWT.2022; 155: 112927. CrossRef
Real-time PCR assays for the quantitative detection of Kazachstania servazzii and Candida sake related to undesirable white colony on kimchi
Mi-Ju Kim, Sung-gi Min, So Won Shin, Jiyong Shin, Hae-Yeong Kim
Food Control.2021; 125: 107984. CrossRef
Microbiota profiles and dynamics in fermented plant‐based products and preliminary assessment of their in vitro gut microbiota modulation
Laura Lavefve, Natacha Cureau, Lindsey Rodhouse, Daya Marasini, Laura M. Walker, Danielle Ashley, Sun‐Ok Lee, Pascale Gadonna‐Widehem, Pauline M. Anton, Franck Carbonero
Food Frontiers.2021; 2(3): 268. CrossRef
Toward a Global Ecology of Fermented Foods
Robert R. Dunn, John Wilson, Lauren M. Nichols, Michael C. Gavin
Current Anthropology.2021; 62(S24): S220. CrossRef
Development of Leuconostoc lactis–Specific Quantitative PCR and its Application for Identification and Enumeration in Fermented Foods
Seul-Ah Kim, Jae-Han Bae, Hyunbin Seong, Nam Soo Han
Food Analytical Methods.2020; 13(4): 992. CrossRef
Comparison of Six Commercial Meat Starter Cultures for the Fermentation of Yellow Mealworm (Tenebrio molitor) Paste
Borremans An, Crauwels Sam, Vandeweyer Dries, Smets Ruben, Verreth Christel, Van Mik, Lievens Bart, Van Leen
Microorganisms.2019; 7(11): 540. CrossRef
Kombucha fermentation enhances the health-promoting properties of soymilk beverage
Xiudong Xia, Yiqiang Dai, Han Wu, Xiaoli Liu, Ying Wang, Liqing Yin, Zhe Wang, Xiaonan Li, Jianzhong Zhou
Journal of Functional Foods.2019; 62: 103549. CrossRef
Viral community predicts the geographical origin of fermented vegetable foods more precisely than bacterial community
Mi-Ja Jung, Min-Soo Kim, Ji-Hyun Yun, June-Young Lee, Pil Soo Kim, Hae-Won Lee, Ji-Hyoung Ha, Seong Woon Roh, Jin-Woo Bae
Food Microbiology.2018; 76: 319. CrossRef
Diversity of Extremely Halophilic Archaeal and Bacterial Communities from Commercial Salts
Ashagrie Gibtan, Kyounghee Park, Mingyeong Woo, Jung-Kue Shin, Dong-Woo Lee, Jae Hak Sohn, Minjung Song, Seong Woon Roh, Sang-Jae Lee, Han-Seung Lee
Frontiers in Microbiology.2017;[Epub] CrossRef
Exploring flavour-producing core microbiota in multispecies solid-state fermentation of traditional Chinese vinegar
Zong-Min Wang, Zhen-Ming Lu, Jin-Song Shi, Zheng-Hong Xu
Scientific Reports.2016;[Epub] CrossRef
Identification and Enumeration Method of Both Eukaryotic and Prokaryotic Microorganisms in Food Sample
Katsuji Watanabe, Naoto Horinishi, Kunimasa Matsumoto, Yuji Sogabe
Food and Nutrition Sciences.2016; 07(05): 345. CrossRef
Evolution of sourdough microbiota in spontaneous sourdoughs started with different plant materials
Valery Ripari, Michael G. Gänzle, Enrico Berardi
International Journal of Food Microbiology.2016; 232: 35. CrossRef
Quantitative analysis of predominant yeasts and volatile compounds in the process of pickled wax gourd
Zu-Fang Wu, Li Sun, Xin Zhang, Xi-Quan Shen, Pei-Fang Weng
CyTA - Journal of Food.2016; 14(1): 92. CrossRef
A Novel Method to Assess the Aerobic Gasoline Degradation by Indigenous Soil Microbial Community using Microbial Diversity Information
Seoyun Hwang, Nari Lee, Hyeji Kwon, Joonhong Park
Journal of The Korean Society of Civil Engineers.2016; 36(5): 839. CrossRef
Review: Diversity of Microorganisms in Global Fermented Foods and Beverages
Jyoti P. Tamang, Koichi Watanabe, Wilhelm H. Holzapfel
Frontiers in Microbiology.2016;[Epub] CrossRef
Detection and Enumeration of Lactic Acid Bacteria, Acetic Acid Bacteria and Yeast in Kefir Grain and Milk Using Quantitative Real‐Time PCR
Dong‐Hyeon Kim, Jung‐Whan Chon, Hyunsook Kim, Hong‐Seok Kim, Dasom Choi, Dae‐Geun Hwang, Kun‐Ho Seo
Journal of Food Safety.2015; 35(1): 102. CrossRef
Rapid Detection of Lactobacillus kefiranofaciens in Kefir Grain and Kefir Milk Using Newly Developed Real-Time PCR
Dong-Hyeon Kim, Jung-Whan Chon, Hong-Seok Kim, Jin-Hyeok Yim, Hyunsook Kim, Kun-Ho Seo
Journal of Food Protection.2015; 78(4): 855. CrossRef
Performance of ELISAs for detection of antibodies against porcine respiratory and reproductive syndrome virus in serum of pigs after PRRSV type 2 live vaccination and challenge
Tatjana Sattler, Jutta Pikalo, Eveline Wodak, Friedrich Schmoll
Porcine Health Management.2015;[Epub] CrossRef
Microbial Ecology of Watery Kimchi
Kyu Hang Kyung, Eduardo Medina Pradas, Song Gun Kim, Yong Jae Lee, Kyong Ho Kim, Jin Joo Choi, Joo Hyong Cho, Chang Ho Chung, Rodolphe Barrangou, Frederick Breidt
Journal of Food Science.2015;[Epub] CrossRef
A competitive quantitative polymerase chain reaction method for characterizing the population dynamics during kimchi fermentation
Gee-Hyun Ahn, Jin Seok Moon, So-Yeon Shin, Won Ki Min, Nam Soo Han, Jin-Ho Seo
Journal of Industrial Microbiology & Biotechnology.2015; 42(1): 49. CrossRef
Fine Structure of Tibetan Kefir Grains and Their Yeast Distribution, Diversity, and Shift
Man Lu, Xingxing Wang, Guowei Sun, Bing Qin, Jinzhou Xiao, Shuling Yan, Yingjie Pan, Yongjie Wang, Cecile Fairhead
PLoS ONE.2014; 9(6): e101387. CrossRef
Microbiota analysis on fermented foods using next generation sequencer
Hiroshi Ono, Jiro Nakayama
Japanese Journal of Lactic Acid Bacteria.2014; 25(1): 3. CrossRef
A systematic strain selection approach for halotolerant and halophilic bioprocess development: a review
Joao M. Uratani, Rajkumari Kumaraswamy, Jorge Rodríguez
Extremophiles.2014; 18(4): 629. CrossRef
Bacterial community analysis during fermentation of ten representative kinds of kimchi with barcoded pyrosequencing
Eun-Jin Park, Jongsik Chun, Chang-Jun Cha, Wan-Soo Park, Che Ok Jeon, Jin-Woo Bae
Food Microbiology.2012; 30(1): 197. CrossRef
Effects of Leuconostoc mesenteroides starter cultures on microbial communities and metabolites during kimchi fermentation
Ji Young Jung, Se Hee Lee, Hyo Jung Lee, Hye-Young Seo, Wan-Soo Park, Che Ok Jeon
International Journal of Food Microbiology.2012; 153(3): 378. CrossRef
Identification and characterization of lactic acid bacteria isolated from traditional pickles in Sichuan, China
Jie Yu, Wa Gao, Manjun Qing, Zhihong Sun, Weihong Wang, Wenjun Liu, Lei Pan, Ting Sun, Hongmei Wang, Na Bai, Heping Zhang
The Journal of General and Applied Microbiology.2012; 58(3): 163. CrossRef
Metagenomic Analysis of Kimchi, a Traditional Korean Fermented Food
Ji Young Jung, Se Hee Lee, Jeong Myeong Kim, Moon Su Park, Jin-Woo Bae, Yoonsoo Hahn, Eugene L. Madsen, Che Ok Jeon
Applied and Environmental Microbiology.2011; 77(7): 2264. CrossRef

Research Support, Non-U.S. Gov't

Virgibacillus xinjiangensis sp. nov., Isolated from a Salt Lake of Xin-jiang Province in China: Che Ok Jeon , Jeong Myeong Kim , Dong-Jin Park , Li-Hua Xu , Cheng-Lin Jiang , Chang-Jin Kim; J. Microbiol. 2009;47(6):705-709. Published online February 4, 2010; DOI: https://doi.org/10.1007/s12275-009-0107-9

672 View
0 Download
8 Crossref

Abstract PDF

A strictly aerobic Gram-positive, moderately halophilic spore forming bacterium, designated strain SL6-1T, was isolated from a salt lake in Xin-jiang province, China. Growth of strain SL6-1T was observed at NaCl concentrations of 0~20% (w/v) (the optimum being 5~7%, w/v). The peptidoglycan type of strain SL6-1T was A1γ-meso-diaminopimelic acid and its major cellular fatty acids were iso-C14:0 and iso-C16:0 and anteiso-C15:0. The major respiratory isoprenoid quinone was MK-7 and the G+C content of the genomic DNA was 44.5 mol%. The major cellular phospholipids were phosphatidylglycerol and diphosphatidylglycerol. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain SL6-1T formed a phylogenetic lineage within the genus Virgibacillus. Based on 16S rRNA gene sequence similarity, the strain was most closely related to Virgibacillus olivae E308T, Virgibacillus kekensis YIM kkny16T, Virgibacillus marismortui DSM 12325T with 97.1%, 97.1%, and 97.0% gene sequence similarities, respectively and the sequence similarities to other related taxa were less than 96.7%. The DNA relatedness values between strain SL6-1T and V. olivae E308T, V. kekensis YIM kkny16T, V. marismortui DSM 12325T were 16.7%, 51.0%, and 22.8%, respectively. On the basis of physiological, biochemical and phylogenetic properties, strain SL6-1T represents a novel species, for which the name Virgibacillus xinjiangensis sp. nov. is proposed. The type strain is SL6-1T (=KCTC 13128T =DSM 19031T).

Citations

Citations to this article as recorded by

Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi
Young Joon Oh, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Jieun Lee, NamHee Kim, Mi-Young Shin, Hyo Kyeong Park, Myung-Ji Seo, Hak-Jong Choi
Journal of Microbiology.2017; 55(12): 933. CrossRef
Virgibacillus oceani sp. nov. isolated from ocean sediment
Xijie Yin, Yanliu Yang, Shuang Wang, Gaiyun Zhang
International Journal of Systematic and Evolutionary Microbiology.2015; 65(Pt_1): 159. CrossRef
Evolution in the Bacillaceae
Patricia Fajardo-Cavazos, Heather Maughan, Wayne L. Nicholson, Patrick Eichenberger, Adam Driks
Microbiology Spectrum.2014;[Epub] CrossRef
Virgibacillus natechei sp. nov., A Moderately Halophilic Bacterium Isolated from Sediment of a Saline Lake in Southwest of Algeria
Meriam Amziane, Farida Metiaz, Amel Darenfed-Bouanane, Zahia Djenane, Okba Selama, Ahmed Abderrahmani, Jean-Luc Cayol, Marie-Laure Fardeau
Current Microbiology.2013; 66(5): 462. CrossRef
Virgibacillus campisalis sp. nov., from a marine solar saltern
Soo-Young Lee, Chul-Hyung Kang, Tae-Kwang Oh, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology .2012; 62(2): 347. CrossRef
Virgibacillus alimentarius sp. nov., isolated from a traditional Korean food
Jandi Kim, Mi-Ja Jung, Seong Woon Roh, Young-Do Nam, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2011; 61(12): 2851. CrossRef
Impact of ionic liquids on extreme microbial biotypes from soil
Francisco J. Deive, Ana Rodríguez, Adélia Varela, Cátia Rodrígues, Maria C. Leitão, Jos A. M. P. Houbraken, Ana B. Pereiro, María A. Longo, M. Ángeles Sanromán, Robert A. Samson, Luís Paulo N. Rebelo, Cristina Silva Pereira
Green Chemistry.2011; 13(3): 687. CrossRef
List of new names and new combinations previously effectively, but not validly, published

International Journal of Systematic and Evolutionary Microbiology .2010; 60(5): 1009. CrossRef

Research Support, Non-U.S. Gov't

Analysis of a Novel Class 1 Integron Containing Metallo-β-Lactamase Gene VIM-2 in Pseudomonas aeruginosa: Jae Hoon Jeong , Kyeong Seob Shin , Jang Won Lee , Eun Jin Park , Seung-Yeol Son; J. Microbiol. 2009;47(6):753-759. Published online February 4, 2010; DOI: https://doi.org/10.1007/s12275-008-0272-2

599 View
0 Download
34 Crossref

Abstract PDF

Carbapenems such as imipenem are stable to most β-lactamases. Recently, increased numbers of carbapenemase producing Gram-negative bacterial strains have been isolated because of the increased use of cabapenems. In this respect, control of these infectious carbapenemase producing Gram-negative bacteria and understanding their resistance mechanism are becoming more important. These carbapenem-hydrolyzing β-lactamase genes have been reported to exist mostly as gene cassettes in an integron. This implies that antibiotic resistance genes may be transferred to other bacteria via the integron. In the present study, we identified and analyzed an integron containing VIM-2 type metallo-β-lactamase gene in a carbapenemase producing Pseudomonas aeruginosa. In addition, the possibility of resistance spread by integron located in a plasmid was tested. Among glucose non-fermenting Gram-negative bacilli with reduced imipenem susceptibility (MIC≥8 μg/ml) isolated from Korean patients, P. aeruginosa 1082 showed resistance to most β-lactams, cephalosporin, and aminoglycoside. We found that P. aeruginosa 1082 was inhibited by EDTA in EDTA double disk synergy test which means that this strain produces metallo-β-lactamase. Class 1 integron containing blaVIM-2 (carbapenem resistance gene), qacF (quaternary ammonium compound resistance gene), aacA4 (aminoglycoside resistance gene), catB3 (chloramphenicol resistance gene), blaOXA-30 (extended-spectrum β-lactam resistance gene), and aadA1 (aminoglycoside resistance gene) gene cassettes was detected in P. aeruginosa 1082. The size of the integron was 5,246 bp and the structure and arrangement of the integron was a novel one in comparison with other integrons found in other P. aeruginosa. The integron could be transferred to Escherichia coli JM109 from P. aeruginosa 1082 possibly via self-transferable plasmid DNA. The integron and a blaVIM-2 gene were detected in the plasmid DNA of the transconjugants whose imipenem resistance was slightly increased as a result of accepting the integron from the donor strain.

Citations

Citations to this article as recorded by

An improved algorithm to screen for carbapenemase production in Pseudomonas aeruginosa
Justin A Ellem, Mitchell J Brown, Indy Sandaradura, Brian P McSharry, Thiru Vanniasinkam
JAC-Antimicrobial Resistance.2026;[Epub] CrossRef
Association between disinfectant resistance genes in exoU and exoS Pseudomonas aeruginosa with sensitivity to multipurpose disinfecting solutions and antibiotics
Tanzina Akter, Fiona Stapleton, Matthew Green, Mark Willcox
Contact Lens and Anterior Eye.2025; 48(5): 102436. CrossRef
Difficult-to-treat (DTR) Pseudomonas aeruginosa harboring Verona-Integron metallo-β-lactamase ( bla VIM ): infection management and molecular analysis
Ana D. Vega, Kailynn DeRonde, Adriana Jimenez, Michael Piazza, Christine Vu, Octavio Martinez, Laura J. Rojas, Steven Marshall, Mohamad Yasmin, Robert A. Bonomo, Lilian M. Abbo, Pranita D. Tamma
Antimicrobial Agents and Chemotherapy.2024;[Epub] CrossRef
Prioritization of Critical Factors for Surveillance of the Dissemination of Antibiotic Resistance in Pseudomonas aeruginosa: A Systematic Review
Jung Hun Lee, Nam-Hoon Kim, Kyung-Min Jang, Hyeonku Jin, Kyoungmin Shin, Byeong Chul Jeong, Dae-Wi Kim, Sang Hee Lee
International Journal of Molecular Sciences.2023; 24(20): 15209. CrossRef
Facile Synthesis of chitosan-g-PVP/f-MWCNTs for application in Cu(II) ions removal and for bacterial growth inhibition in aqueous solutions
Samira T. Rabie, Yasser Mahmoud A. Mohamed, Reham A. Abdel-Monem, Hossam A. El Nazer
Scientific Reports.2022;[Epub] CrossRef
Genetic Diversity, Distribution, and Genomic Characterization of Antibiotic Resistance and Virulence of Clinical Pseudomonas aeruginosa Strains in Kenya
Shahiid Kiyaga, Cecilia Kyany'a, Angela W. Muraya, Hunter J. Smith, Emma G. Mills, Caleb Kibet, Gerald Mboowa, Lillian Musila
Frontiers in Microbiology.2022;[Epub] CrossRef
Pseudomonas aeruginosa efflux pump superfamily (review of literature)
Mikhail Eduardovich Ivanov, N. K. Fursova, V. D. Potapov
Russian Clinical Laboratory Diagnostics.2022; 67(1): 53. CrossRef
Mechanical, thermal and antibacterial performances of acrylonitrile butadiene rubber/polyvinyl chloride loaded with Moringa oleifera leaves powder
Ahmed M. Khalil, Samira T. Rabie
Journal of Thermal Analysis and Calorimetry.2021; 143(4): 2973. CrossRef
Promising features for poly(vinyl chloride) enriched with Moringa oleifera: Photostability, rheological, mechanical, thermal and antibacterial properties
Ahmed M. Khalil, Reham A. Abdel‐Monem, Samira T. Rabie
Journal of Vinyl and Additive Technology.2021; 27(1): 28. CrossRef
Pseudomonas putida group species as reservoirs of mobilizable Tn402-like class 1 integrons carrying blaVIM-2 metallo-β-lactamase genes
Marco A. Brovedan, Patricia M. Marchiaro, María S. Díaz, Diego Faccone, Alejandra Corso, Fernando Pasteran, Alejandro M. Viale, Adriana S. Limansky
Infection, Genetics and Evolution.2021; 96: 105131. CrossRef
Comparative Evaluation of the Effects of Binzalkonium Chloride, Iodine, Gluteraldehyde and Hydrogen Peroxide Disinfectants against Avian Salmonellae Focusing on Genotypic Resistance Pattern of the Salmonellae Serotypes toward Benzalkonium Chloride
A Aksoy, KEM El Kahlout, H Yardimci
Brazilian Journal of Poultry Science.2020;[Epub] CrossRef
Thiazole derivatives‐functionalized polyvinyl chloride nanocomposites with photostability and antimicrobial properties
Samir T. Gaballah, Ahmed M. Khalil, Samira T. Rabie
Journal of Vinyl and Additive Technology.2019;[Epub] CrossRef
Antimicrobial Resistance Profiles and Clonal Relatedness of <i>Pseudomonas aeruginosa</i> Strains Recovered from Wounds Infections of Outpatient Population Presenting in a Rural Hospital in Kenya
Thomas Gachuki Thuo, Ciira Kiyuukia, John Maina, Terry Judah, Susan Kiiru, John Kiiru
Advances in Microbiology.2019; 09(02): 119. CrossRef
Molecular Analysis of Carbapenem-Resistant Pseudomonas aeruginosa Isolated from Patients Hospitalized in Daejeon between 2008 and 2014 Years
Hye Hyun Cho
The Korean Journal of Clinical Laboratory Science.2018; 50(4): 406. CrossRef
Antimicrobial activity of PVC-pyrazolone-silver nanocomposites
Ahmed A. El-Sayed, Ahmed M. Khalil, Mahmoud El-Shahat, Nahid Y. Khaireldin, Samira T. Rabie
Journal of Macromolecular Science, Part A.2016; 53(6): 346. CrossRef
Antibiotic Resistant Bacteria Found in Municipal Drinking Water
Sadia Khan, Charles W. Knapp, Tara K. Beattie
Environmental Processes.2016; 3(3): 541. CrossRef
Pseudomonas aeruginosa and Achromobacter sp. Clonal Selection Leads to Successive Waves of Contamination of Water in Dental Care Units
Fatima Abdouchakour, Chloé Dupont, Delphine Grau, Fabien Aujoulat, Patricia Mournetas, Hélène Marchandin, Sylvie Parer, Philippe Gibert, Jean Valcarcel, Estelle Jumas-Bilak, J. L. Schottel
Applied and Environmental Microbiology.2015; 81(21): 7509. CrossRef
A fully sealed plastic chip for multiplex PCR and its application in bacteria identification
Youchun Xu, He Yan, Yan Zhang, Kewei Jiang, Ying Lu, Yonghong Ren, Hui Wang, Shan Wang, Wanli Xing
Lab on a Chip.2015; 15(13): 2826. CrossRef
Oral Gram-negative anaerobic bacilli as a reservoir of β-lactam resistance genes facilitating infections with multiresistant bacteria
Clarisse Dupin, Zohreh Tamanai-Shacoori, Elodie Ehrmann, Anais Dupont, Frédérique Barloy-Hubler, Latifa Bousarghin, Martine Bonnaure-Mallet, Anne Jolivet-Gougeon
International Journal of Antimicrobial Agents.2015; 45(2): 99. CrossRef
Detection and characterization of class 1 integron-associated gene cassettes from Pseudomonas aeruginosa isolates in southern Taiwan
Ke-Yu Hsiao, Mei-Feng Lee, Chien-Fang Peng
Biomarkers and Genomic Medicine.2014; 6(2): 74. CrossRef
Dissemination of IMP-6-producing Pseudomonas aeruginosa ST244 in multiple cities in China
Y. Chen, M. Sun, M. Wang, Y. Lu, Z. Yan
European Journal of Clinical Microbiology & Infectious Diseases.2014; 33(7): 1181. CrossRef
Characterization of Carbapenem Nonsusceptible Pseudomonas aeruginosa in Denmark: A Nationwide, Prospective Study
Frank Hansen, Helle Krogh Johansen, Claus Østergaard, Magnus Arpi, Dennis Schrøder Hansen, Pia Littauer, Anette Holm, Ole Heltberg, Helga Schumacher, Kurt Fuursted, Mari-Ann Domar Lykke, Birgitte Tønning, Anette M. Hammerum, Ulrik Stenz Justesen
Microbial Drug Resistance.2014; 20(1): 22. CrossRef
Molecular Characterization of Carbapenem-Resistant Strains of Klebsiella pneumoniae Isolated from Iranian Patients: First Identification of bla KPC Gene
Saman Nobari, Fereshteh Shahcheraghi, Fatemeh Rahmati Ghezelgeh, Babak Valizadeh
Microbial Drug Resistance.2014; 20(4): 285. CrossRef
Prevalence of bacteria resistant to antibiotics and/or biocides on meat processing plant surfaces throughout meat chain production
Leyre Lavilla Lerma, Nabil Benomar, Antonio Gálvez, Hikmate Abriouel
International Journal of Food Microbiology.2013; 161(2): 97. CrossRef
Carbapenemases: Partners in crime
Karen Bush
Journal of Global Antimicrobial Resistance.2013; 1(1): 7. CrossRef
New integron gene arrays from multiresistant clinical isolates of members of the Enterobacteriaceae and Pseudomonas aeruginosa from hospitals in Malaysia
Sue-Bee Kor, Quok-Cheong Choo, Choy-Hoong Chew
Journal of Medical Microbiology .2013; 62(3): 412. CrossRef
Analysis of integrons and associated gene cassettes in clinical isolates of multidrug resistant Pseudomonas aeruginosa from Southwest Nigeria
Bamidele T Odumosu, Bolanle A Adeniyi, Ram Chandra
Annals of Clinical Microbiology and Antimicrobials.2013; 12(1): 29. CrossRef
Emergence of resistance to antibacterial agents: the role of quaternary ammonium compounds—a critical review
Sylvie Buffet-Bataillon, Pierre Tattevin, Martine Bonnaure-Mallet, Anne Jolivet-Gougeon
International Journal of Antimicrobial Agents.2012; 39(5): 381. CrossRef
Genetic basis of resistance to quaternary ammonium compounds - the qac genes and their role: a review
Z. Jaglic, D. Cervinkova
Veterinární medicína.2012; 57(6): 275. CrossRef
Infrequent Finding of Metallo-β-Lactamase VIM-2 in Carbapenem-Resistant Pseudomonas aeruginosa Strains from Croatia
Sanda Sardelic, Branka Bedenic, Céline Colinon-Dupuich, Stjepan Orhanovic, Zrinka Bosnjak, Vanda Plecko, Benoit Cournoyer, Gian Maria Rossolini
Antimicrobial Agents and Chemotherapy.2012; 56(5): 2746. CrossRef
Analysis of integrons and associated gene cassettes of metallo-β-lactamase-positive Pseudomonas aeruginosa in Malaysia
Yalda Khosravi, Sun Tee Tay, Jamuna Vadivelu
Journal of Medical Microbiology.2011; 60(7): 988. CrossRef
Résistance aux carbapénèmes : vers une nouvelle impasse ?
N. Grall, A. Andremont, L. Armand-Lefèvre
Journal des Anti-infectieux.2011; 13(2): 87. CrossRef
Multidrug-resistant Organisms and Healthcare-associated Infections
Mi-Na Kim
Hanyang Medical Reviews.2011; 31(3): 141. CrossRef
The Accessory Genome of Pseudomonas aeruginosa
Vanderlene L. Kung, Egon A. Ozer, Alan R. Hauser
Microbiology and Molecular Biology Reviews.2010; 74(4): 621. CrossRef

Research Support, Non-U.S. Gov't

Functional Analysis of pilQ Gene in Xanthomanas oryzae pv. oryzae, Bacterial Blight Pathogen of Rice: Seon-Hwa Lim , Byoung-Ho So , Ji-Chun Wang , Eun-Seong Song , Young-Jin Park , Byoung-Moo Lee , Hee-Wan Kang; J. Microbiol. 2008;46(2):214-220. Published online June 11, 2008; DOI: https://doi.org/10.1007/s12275-007-0173-9

547 View
0 Download
26 Crossref

Abstract PDF

Bacterial blight (BB) of rice, caused by Xanthomonas oryzae pv. oryzae (Xoo), is the most devastating bacterial disease in rice. A virulence-attenuated mutant strain HNU89K9 of X. oryzae pv. oryzae (KACC10331), with a transposon insertion in the pilQ gene was used for this study. The pilQ was involved in the gene cluster pilMNOPQ of the Xoo genome. Growth rate of the pilQ mutant was similar to that of wild-type. At level of amino acids, PilQ of Xoo showed that a high sequence identities more than 94% and 70% to Xanthomonas species and to Xyllela fastidiosa, respectively but a low sequence homology less than 30% to other bacterial species. The twitching motility forming a marginal fringe on PSA media was observed on colony of the wild-type strain KACC10331, but not in mutant HNU89K9. Wild-type Xoo cells formed a biofilm on the surface of the PVC plastic test tube, while the mutant strain HNU89K9 did not form a biofilm. The results suggest that the pilQ gene of X. oryzae pv. oryzae plays a critical role in pathogenicity, twitching motility, and biofilm formation.

Citations

Citations to this article as recorded by

A Malectin‐Like Receptor Kinase and Bacterial Motility Shape Tissue‐Specific Maize–Xanthomonas vasicola Interactions
Alexander Mullens, Sarah Hind, Tiffany Jamann
Molecular Plant Pathology.2026;[Epub] CrossRef
Xanthomonas oryzae Orphan Response Regulator EmvR Is Involved in Virulence, Extracellular Polysaccharide Production and Cell Motility
Pei‐Dong Ren, Zeng‐Feng Ma, Qing‐Qing Liu, Xin‐Qi Xia, Gui‐Ning Zhu, Ji‐Liang Tang, Rui‐Fang Li, Guang‐Tao Lu
Molecular Plant Pathology.2025;[Epub] CrossRef
Contribution of the type IV pili secretin tapQ to motility, growth, adhesion, stress tolerance and virulence of Aeromonas hydrophila
Ziyi Liao, Rui Long, Wan'e Ding, Yongyao Yu, Adeeba Naseer, Liping Li, Hua Ye, Hao Xu, Yun Li, Xiaoyi Pan, Ronghua Wu
International Journal of Biological Macromolecules.2025; 307: 142203. CrossRef
Gene editing of non-coding regulatory DNA and its application in crop improvement
Yu-Hao Chen, Jun Lu, Xia Yang, Li-Chun Huang, Chang-Quan Zhang, Qiao-Quan Liu, Qian-Feng Li, Usha Vijayraghavan
Journal of Experimental Botany.2023; 74(19): 6158. CrossRef
Pathogen Adaptation to the Xylem Environment
Leonardo De La Fuente, Marcus V. Merfa, Paul A. Cobine, Jeffrey J. Coleman
Annual Review of Phytopathology.2022; 60(1): 163. CrossRef
Improvement of Bacterial Blight Resistance in Two Conventionally Cultivated Rice Varieties by Editing the Noncoding Region
Changyan Li, Lei Zhou, Bian Wu, Sanhe Li, Wenjun Zha, Wei Li, Zaihui Zhou, Linfeng Yang, Lei Shi, Yongjun Lin, Aiqing You
Cells.2022; 11(16): 2535. CrossRef
Comparative Pathogenomic Analysis of Two Banana Pathogenic Dickeya Strains Isolated from China and the Philippines
Chenxing Tan, Chuhao Li, Ming Hu, Anqun Hu, Yang Xue, Xiaofan Zhou, Jianuan Zhou
International Journal of Molecular Sciences.2022; 23(21): 12758. CrossRef
The RpoN2‐PilRX regulatory system governs type IV pilus gene transcription and is required for bacterial motility and virulence in Xanthomonas oryzae pv. oryzae
Chao Yu, Doan-Phuong Nguyen, Zhaoyu Ren, Jianan Liu, Fenghuan Yang, Fang Tian, Susu Fan, Huamin Chen
Molecular Plant Pathology.2020; 21(5): 652. CrossRef
Host–Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis
Michael Gétaz, Joanna Puławska, Theo H.M. Smits, Joël F. Pothier
Microorganisms.2020; 8(8): 1253. CrossRef
The Homologous Components of Flagellar Type III Protein Apparatus Have Acquired a Novel Function to Control Twitching Motility in a Non-Flagellated Biocontrol Bacterium
Alex M. Fulano, Danyu Shen, Miki Kinoshita, Shan-Ho Chou, Guoliang Qian
Biomolecules.2020; 10(5): 733. CrossRef
Association Between Loss of Type IV Pilus Synthesis Ability and Phenotypic Variation in the Cucurbit Pathogenic Bacterium Acidovorax citrulli
Tally Rosenberg, Bolaji Babajide Salam, Saul Burdman
Molecular Plant-Microbe Interactions®.2018; 31(5): 548. CrossRef
Flagella and Pili of Xanthomonas axonopodis pv. glycines are associated with motility, biofilm formation and virulence on soybean
Dusit Athinuwat, Siraprapa Brooks, Thomas J. Burr, Sutruedee Prathuangwong
Journal of Phytopathology.2018; 166(7-8): 590. CrossRef
Thyme Oil Reduces Biofilm Formation and Impairs Virulence of Xanthomonas oryzae
Akanksha Singh, Rupali Gupta, Sudeep Tandon, Rakesh Pandey
Frontiers in Microbiology.2017;[Epub] CrossRef
Toward a better understanding of the mechanisms of symbiosis: a comprehensive proteome map of a nascent insect symbiont
François Renoz, Antoine Champagne, Hervé Degand, Anne-Marie Faber, Pierre Morsomme, Vincent Foray, Thierry Hance
PeerJ.2017; 5: e3291. CrossRef
The Xanthomonas type IV pilus
German Dunger, Edgar Llontop, Cristiane R Guzzo, Chuck S Farah
Current Opinion in Microbiology.2016; 30: 88. CrossRef
New insights on molecular regulation of biofilm formation in plant‐associated bacteria
Luisa F. Castiblanco, George W. Sundin
Journal of Integrative Plant Biology.2016; 58(4): 362. CrossRef
Proteomic and functional analyses of a novel porin-like protein in Xanthomonas oryzae pv. oryzae
Hye-Jee Park, Sang-Won Lee, Sang-Wook Han
Journal of Microbiology.2014; 52(12): 1030. CrossRef
Characterization of Novel Virulent Broad-Host-Range Phages of Xylella fastidiosa and Xanthomonas
S. J. Ahern, M. Das, T. S. Bhowmick, R. Young, C. F. Gonzalez
Journal of Bacteriology.2014; 196(2): 459. CrossRef
Genome sequence of Xanthomonas fuscans subsp. fuscansstrain 4834-R reveals that flagellar motility is not a general feature of xanthomonads
Armelle Darrasse, Sébastien Carrère, Valérie Barbe, Tristan Boureau, Mario L Arrieta-Ortiz, Sophie Bonneau, Martial Briand, Chrystelle Brin, Stéphane Cociancich, Karine Durand, Stéphanie Fouteau, Lionel Gagnevin, Fabien Guérin, Endrick Guy, Arnaud Indiana
BMC Genomics.2013;[Epub] CrossRef
A pith necrosis caused by Xanthomonas perforans on tomato plants
Dalia Aiello, Giuseppe Scuderi, Alessandro Vitale, Giuseppe Firrao, Giancarlo Polizzi, Gabriella Cirvilleri
European Journal of Plant Pathology.2013; 137(1): 29. CrossRef
Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels
Isabelle Pieretti, Monique Royer, Valérie Barbe, Sébastien Carrere, Ralf Koebnik, Arnaud Couloux, Armelle Darrasse, Jérôme Gouzy, Marie-Agnès Jacques, Emmanuelle Lauber, Charles Manceau, Sophie Mangenot, Stéphane Poussier, Béatrice Segurens, Boris Szurek,
BMC Genomics.2012;[Epub] CrossRef
Involvement of Type IV Pili in Pathogenicity of Plant Pathogenic Bacteria
Saul Burdman, Ofir Bahar, Jennifer K. Parker, Leonardo De La Fuente
Genes.2011; 2(4): 706. CrossRef
Small Protein-Mediated Quorum Sensing in a Gram-Negative Bacterium
Sang-Wook Han, Malinee Sriariyanun, Sang-Won Lee, Manoj Sharma, Ofir Bahar, Zachary Bower, Pamela C. Ronald, Dipshikha Chakravortty
PLoS ONE.2011; 6(12): e29192. CrossRef
In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1
Mauricio Soto-Suárez, Diana Bernal, Carolina González, Boris Szurek, Romain Guyot, Joe Tohme, Valérie Verdier
BMC Microbiology.2010;[Epub] CrossRef
Regulation and secretion ofXanthomonasvirulence factors
Daniela Büttner, Ulla Bonas
FEMS Microbiology Reviews.2010; 34(2): 107. CrossRef
Multiple Adhesin-Like Functions of Xanthomonas oryzae pv. oryzae Are Involved in Promoting Leaf Attachment, Entry, and Virulence on Rice
Amit Das, Nandini Rangaraj, Ramesh V. Sonti
Molecular Plant-Microbe Interactions®.2009; 22(1): 73. CrossRef

Research Support, Non-U.S. Gov't

Antifungal Activities of the Essential Oils in Syzygium aromaticum (L.) Merr. Et Perry and Leptospermum petersonii Bailey and their Constituents against Various Dermatophytes: Mi-Jin Park , Ki-Seob Gwak , In Yang , Won-Sil Choi , Hyun-Jin Jo , Je-Won Chang , Eui-Bae Jeung , In-Gyu Choi; J. Microbiol. 2007;45(5):460-465.; DOI: https://doi.org/2589 [pii]

503 View
1 Download

Abstract PDF: This study was carried out in order to investigate the potential of using plant oils derived from Leptospermum petersonii Bailey and Syzygium aromaticum L. Merr. Et Perry as natural antifungal agents. The antifungal effects of essential oils at concentrations of 0.05, 0.1, 0.15, and 0.2 mg/ml on the dermatophytes Microsporum canis (KCTC 6591), Trichophyton mentagrophytes (KCTC 6077), Trichophyton rubrum (KCCM 60443), Epidermophyton floccosum (KCCM 11667), and Microsporum gypseum were evaluated using the agar diffusion method. The major constituents of the active fraction against the dermatophytes were identified by gas chromatography-mass spectrometry and high-performance liquid chromatography analysis. The antifungal activities of S. aromaticum oil (clove oil) against the dermatophytes tested were highest at a concentration of 0.2 mg/ml, with an effectiveness of more than 60%. Hyphal growth was completely inhibited in T. mentagrophytes, T. rubrum, and M. gypseum by treatment with clove oil at a concentration of 0.2 mg/ml. Eugenol was the most effective antifungal constituent of clove oil against the dermatophytes T. mentagrophytes and M. canis. Morphological changes in the hyphae of T. mentagrophytes, such as damage to the cell wall and cell membrane and the expansion of the endoplasmic reticulum, after treatment with 0.11 mg/ml eugenol were observed by transmission electron microscopy (TEM). At a concentration of 0.2 mg/ml, L. petersonii oil (LPO) was more than 90% effective against all of the dermatophytes tested, with the exception of T. rubrum. Geranial was determined to be the most active antifungal constituent of L. petersonii oil. Taken together, the results of this study demonstrate that clove and tea tree oils exhibited significant antifungal activities against the dermatophytes tested in this study.

Research Support, Non-U.S. Gov't

Application of Bovine Viral Diarrhoea Virus as an Internal Control in Nucleic Acid Amplification Tests for Hepatitis C Virus RNA in Plasma-Derived Products: Si Hyung Yoo , Seung Hee Hong , Sa Rah Jung , Su Jin Park , Nam Kyung Lee , Soon Nam Kim , Sang Mo Kang , Hong Ki Min , Sue Nie Park , Seung Hwa Hong; J. Microbiol. 2006;44(1):72-76.; DOI: https://doi.org/2334 [pii]

458 View
0 Download

Abstract PDF: Plasma-derived products are produced from plasma via fractionation and chromatography techniques, but can also be produced by other methods. In the performance of nucleic acid amplification tests (NAT) with plasma-derived products, it is necessary to include an internal control for the monitoring of all procedures. In order to avoid false negative results, we confirmed the usefulness of the bovine viral diarrhoea virus (BVDV) for use as an internal control in the detection of hepatitis C virus (HCV) RNA in plasma-derived products. These products, which were spiked with BVDV, were extracted and then NAT was performed. Specificity and sensitivity were determined via the adjustment of primer concentrations and annealing temperatures. BVDV detection allows for validation in the extraction, reverse transcription, and amplification techniques used for HCV detection in plasma-derived products.

First
Prev
Page of 1
Next
Last

Search