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Reviews
- Integrative perspectives on glycosylation networks in fungi and oomycetes
- Heeji Moon, Hokyoung Son
- J. Microbiol. 2025;63(12):e2510003. Published online December 31, 2025
- DOI: https://doi.org/10.71150/jm.2510003
- 653 View
- 19 Download
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Abstract
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Pathogenic fungi pose major threats to both global food security and human health, yet the molecular basis of their virulence remains only partially understood. Beyond genetic and transcriptional control, emerging evidence highlights protein glycosylation as a key post-translational modification that governs fungal development, stress adaptation, and host interactions. Glycosylation regulates protein folding, stability, trafficking, and immune evasion, thereby shaping infection processes across diverse pathogens. While extensively studied in model organisms, our understanding of glycosylation in pathogenic fungi remains fragmented and lacks a coherent framework linking glycosylation dynamics to fungal development and pathogenicity. This review synthesizes recent advances from proteomic, transcriptomic, and glycomic studies in pathogenic fungi, focusing on interspecific variation in glycogenes and enzymes, hierarchical regulatory networks, and glycoprotein-mediated mechanisms of virulence. Finally, we outline current challenges and highlight glycosylation-targeted strategies as promising avenues for antifungal intervention.
- Extracellular vesicles of Gram-negative and Gram-positive probiotics
- Yangyunqi Wang, Chongxu Duan, Xiaomin Yu
- J. Microbiol. 2025;63(7):e2506005. Published online July 31, 2025
- DOI: https://doi.org/10.71150/jm.2506005
- 4,586 View
- 148 Download
- 3 Web of Science
- 3 Crossref
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Abstract
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Extracellular vesicles derived from probiotics have received considerable attention for their pivotal role in bacterial‒host communication. These nanosized, bilayer-encapsulated vesicles carry diverse bioactive molecules, such as proteins, lipids, nucleic acids, and metabolites. Currently, ample evidence has emerged that probiotic extracellular vesicles may modulate several processes of host physiological hemostasis and offer therapeutic benefits. This review examines the biogenesis, composition, and immunomodulatory functions of probiotic-derived extracellular vesicles in probiotic–host interactions, highlighting the therapeutic potential of probiotic extracellular vesicles in the diagnosis and treatment of conditions such as cancer and inflammatory bowel disease. We further summarize the techniques for the separation and purification of extracellular vesicles, providing a methodological foundation for future research and applications. Although the field of probiotic extracellular vesicle research is still in its infancy, the prospects for their application in the biomedical field are broad, potentially emerging as a novel therapeutic approach.
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Citations
Citations to this article as recorded by
- Decoding bacterial extracellular vesicles: A review on isolation and characterization techniques
Malatesh S. Devati, Apoorva Jnana, Stephen P. Kidd, Slade O. Jensen, T. G. Satheesh Babu, Dinesh Upadhya, Thokur S. Murali
Archives of Microbiology.2026;[Epub] CrossRef - Standardizing Bacterial Extracellular Vesicle Purification: A Call for Consensus
Dongsic Choi, Eun-Young Lee
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef - Advances in Biological Functions and Applications of Feeding Microorganism-derived Extracellular Vesicles
Yuanyuan Zhu, Xiaofang Zhang, Xin Feng, Yanyan Huang, Langhong Wang, Huihua Zhang, Xinan Zeng, Zhonglin Tang, Qien Qi
Probiotics and Antimicrobial Proteins.2025;[Epub] CrossRef
- Decoding bacterial extracellular vesicles: A review on isolation and characterization techniques
Research Article
- Korean Red ginseng enhances ZBP1-mediated cell death to suppress viral protein expression in host defense against Influenza A virus
- Jueun Oh, Hayeon Kim, Jihye Lee, Suhyun Kim, Seyun Shin, Young-Eui Kim, Sehee Park, SangJoon Lee
- J. Microbiol. 2025;63(1):e.2409007. Published online January 24, 2025
- DOI: https://doi.org/10.71150/jm.2409007
- 2,001 View
- 124 Download
- 4 Web of Science
- 5 Crossref
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Abstract
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Supplementary Material -
Korean Red ginseng has emerged as a potent candidate in the fight against various viral infections, demonstrating significant efficacy both in vitro and in vivo, particularly against influenza A viruses. Despite substantial evidence of its antiviral properties, the detailed molecular mechanisms through which it reduces viral lethality remain insufficiently understood. Our investigations have highlighted the superior effectiveness of Korean Red ginseng against influenza viruses, outperforming its effects on numerous other viral strains. We aim to uncover the specific mechanisms by which Korean Red ginseng exerts its antiviral effects, focusing on influenza A viruses. Our prior studies have identified the role of Z-DNA-binding protein 1 (ZBP1), a signaling complex involved in inducing programmed cell death in response to influenza virus infection. Given the critical role of ZBP1 as a sensor for viral nucleic acid, we hypothesize that Korean Red ginseng may modulate the ZBP1-derived cell death pathway. This interaction is anticipated to enhance cell death while concurrently suppressing viral protein expression, offering novel insights into the antiviral mechanism of Korean Red ginseng against influenza A viruses.
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Citations
Citations to this article as recorded by- Pattern recognition receptors and inflammasome: Now and beyond
SuHyeon Oh, Young Ki Choi, SangJoon Lee
Molecules and Cells.2025; 48(8): 100239. CrossRef - Targeting innate immune sensors for therapeutic strategies in infectious diseases
Seyun Shin, Young Ki Choi, SangJoon Lee
Journal of Microbiology.2025; 63(6): e2503009. CrossRef - Formation and biological implications of Z-DNA
Yonghang Run, Mahmoud Tavakoli, Yuxuan Zhang, Karen M. Vasquez, Wenli Zhang
Trends in Genetics.2025;[Epub] CrossRef - mGem: Noncanonical nucleic acid structures—powerful but neglected antiviral targets
Václav Brázda, Richard P. Bowater, Petr Pečinka, Martin Bartas, Vinayaka R. Prasad
mBio.2025;[Epub] CrossRef - AIM2 drives inflammatory cell death and monkeypox pathogenesis
Jueun Oh, Yun-Ho Hwang, Jihye Lee, Cheong Seok, SuHyeon Oh, Hye Yoon Kim, Nabukenya Mariam, Jaeyoung Ahn, GyeongJu Yu, Jaewoo Park, Hayeon Kim, Suhyun Kim, Seyun Shin, Min-Chul Jung, Jinwoo Gil, Joo Sang Lee, Young Ki Choi, Dokeun Kim, Daesik Kim, You-Jin
Cellular & Molecular Immunology.2025; 22(12): 1615. CrossRef
- Pattern recognition receptors and inflammasome: Now and beyond
Reviews
- Microbiome-Mucosal Immunity Nexus: Driving Forces in Respiratory Disease Progression
- Young Chae Park, Soo Yeon Choi, Yunah Cha, Hyeong Won Yoon, Young Min Son
- J. Microbiol. 2024;62(9):709-725. Published online September 6, 2024
- DOI: https://doi.org/10.1007/s12275-024-00167-4
- 534 View
- 6 Download
- 4 Web of Science
- 5 Crossref
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Abstract
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- The importance of the complex interplay between the microbiome and mucosal immunity, particularly within the respiratory tract, has gained significant attention due to its potential implications for the severity and progression of lung diseases. Therefore, this review summarizes the specific interactions through which the respiratory tract-specific microbiome influences mucosal immunity and ultimately impacts respiratory health. Furthermore, we discuss how the microbiome affects mucosal immunity, considering tissue-specific variations, and its capacity in respiratory diseases containing asthma, chronic obstructive pulmonary disease, and lung cancer. Additionally, we investigate the external factors which affect the relationship between respiratory microbiome and mucosal immune responses. By exploring these intricate interactions, this review provides valuable insights into the potential for microbiome-based interventions to modulate mucosal immunity and alleviate the severity of respiratory diseases.
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Citations
Citations to this article as recorded by- The impact of environmental factors on respiratory tract microbiome and respiratory system diseases
Yutao Ge, Guo Tang, Yawen Fu, Peng Deng, Rong Yao
European Journal of Medical Research.2025;[Epub] CrossRef - Meta-transcriptomics Reveals Dysbiosis of the Respiratory Microbiome in Older Adults with Long COVID
Meng’en Liao, Jianpeng Cai, Feng Zhu, Yuanbo Lan, Tianqi Xu, Jingxin Guo, Quanlin Xue, Yilong Wen, Fan Zou, Yu Zhang, Shiliang Zhang, Yan Yan, Jingwen Ai, Jie Cui, Wenhong Zhang
Research.2025;[Epub] CrossRef - Lactobacillus salivarius HHuMin-U attenuates vulvovaginal candidiasis via vaginal epithelial immune enhancement mediated by NF-κB activation
Juwon Choi, Jay-Young Jo, Ji Su Lee, Joe Eun Son, Sun Young Kim, Hye Eun Lee, Yeong-Je Seong, Keon Heo, Yongbaek Kim, Myeong Soo Park, Sanguine Byun
New Biotechnology.2025; 90: 36. CrossRef - Immune system - can it be boosted/influenced?
Jiřina Bartůňková
Medicína pro praxi.2025; 22(5): 319. CrossRef - Bacteria and fungi of the lung: allies or enemies?
Enrico Garaci, Marilena Pariano, Emilia Nunzi, Claudio Costantini, Marina Maria Bellet, Cinzia Antognelli, Matteo Antonio Russo, Luigina Romani
Frontiers in Pharmacology.2024;[Epub] CrossRef
- The impact of environmental factors on respiratory tract microbiome and respiratory system diseases
- Role of Rab GTPases in Bacteria Escaping from Vesicle Trafficking of Host Cells
- Huiling Xu, Shengnan Wang, Xiaozhou Wang, Pu Zhang, Qi Zheng, ChangXi Qi, Xiaoting Liu, Muzi Li, Yongxia Liu, Jianzhu Liu
- J. Microbiol. 2024;62(8):581-590. Published online August 30, 2024
- DOI: https://doi.org/10.1007/s12275-024-00162-9
- 392 View
- 5 Download
- 1 Web of Science
- 1 Crossref
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Abstract
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- Most bacteria will use their toxins to interact with the host cell, causing damage to the cell and then escaping from it. When bacteria enter the cell, they will be transported via the endosomal pathway. Rab GTPases are involved in bacterial transport as major components of endosomes that bind to their downstream effector proteins. The bacteria manipulate some Rab GTPases, escape the cell, and get to survive. In this review, we will focus on summarizing the many processes of how bacteria manipulate Rab GTPases to control their escape.
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Citations
Citations to this article as recorded by- Rab5-mediated phagocytosis restricts Spiroplasma eriocheiris infection in crabs through a ubiquitination-dependent mechanism
Yubo Ma, Yu Yao, Xin Yin, Zhenyu Yu, Jing Yan, Yaqin Wang, Wei Gu, Xuguang Li, Jun Zhou, Qingguo Meng
Aquaculture.2025; 607: 742635. CrossRef
- Rab5-mediated phagocytosis restricts Spiroplasma eriocheiris infection in crabs through a ubiquitination-dependent mechanism
Meta-Analysis
- Exploring COVID-19 Pandemic Disparities with Transcriptomic Meta-analysis from the Perspective of Personalized Medicine
- Medi Kori, Ceyda Kasavi, Kazim Yalcin Arga
- J. Microbiol. 2024;62(9):785-798. Published online July 9, 2024
- DOI: https://doi.org/10.1007/s12275-024-00154-9
- 482 View
- 11 Download
- 2 Web of Science
- 2 Crossref
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Abstract
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- Infection with SARS-CoV2, which is responsible for COVID-19, can lead to differences in disease development, severity and mortality rates depending on gender, age or the presence of certain diseases. Considering that existing studies ignore these differences, this study aims to uncover potential differences attributable to gender, age and source of sampling as well as viral load using bioinformatics and multi-omics approaches. Differential gene expression analyses were used to analyse the phenotypic differences between SARS-CoV-2 patients and controls at the mRNA level. Pathway enrichment analyses were performed at the gene set level to identify the activated pathways corresponding to the differences in the samples. Drug repurposing analysis was performed at the protein level, focusing on host-mediated drug candidates to uncover potential therapeutic differences. Significant differences (i.e. the number of differentially expressed genes and their characteristics) were observed for COVID-19 at the mRNA level depending on the sample source, gender and age of the samples. The results of the pathway enrichment show that SARS-CoV-2 can be combated more effectively in the respiratory tract than in the blood samples. Taking into account the different sample sources and their characteristics, different drug candidates were identified. Evaluating disease prediction, prevention and/or treatment strategies from a personalised perspective is crucial. In this study, we not only evaluated the differences in COVID-19 from a personalised perspective, but also provided valuable data for further experimental and clinical efforts. Our findings could shed light on potential pandemics.
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Citations
Citations to this article as recorded by- Integrated multi-sample transcriptomic analysis of COVID-19 patients against controls using a bioinformatics pipeline
Li Ying Khoo, Sarinder Kaur Dhillon
Scientific Reports.2025;[Epub] CrossRef - Differential Impact of Spike Protein Mutations on SARS-CoV-2 Infectivity and Immune Evasion: Insights from Delta and Kappa Variants
Tae-Hun Kim, Sojung Bae, Jinjong Myoung
Journal of Microbiology and Biotechnology.2024; 34(12): 2506. CrossRef
- Integrated multi-sample transcriptomic analysis of COVID-19 patients against controls using a bioinformatics pipeline
Reviews
- Metabolic Interaction between Host and the Gut Microbiota during High-Fat Diet-Induced Colorectal Cancer
- Chaeeun Lee, Seungrin Lee, Woongjae Yoo
- J. Microbiol. 2024;62(3):153-165. Published online April 16, 2024
- DOI: https://doi.org/10.1007/s12275-024-00123-2
- 668 View
- 19 Download
- 11 Web of Science
- 10 Crossref
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Abstract
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- Colorectal cancer (CRC) is the second-highest cause of cancer-associated mortality among both men and women worldwide. One of the risk factors for CRC is obesity, which is correlated with a high-fat diet prevalent in Western dietary habits. The association between an obesogenic high-fat diet and CRC has been established for several decades; however, the mechanisms by which a high-fat diet increases the risk of CRC remain unclear. Recent studies indicate that gut microbiota strongly infuence the pathogenesis of both high-fat diet-induced obesity and CRC. The gut microbiota is composed of hundreds of bacterial species, some of which are implicated in CRC. In particular, the expansion of facultative anaerobic Enterobacteriaceae, which is considered a microbial signature of intestinal microbiota functional imbalance (dysbiosis), is associated with both high-fat diet-induced obesity and CRC. Here, we review the interaction between the gut microbiome and its metabolic byproducts in the context of colorectal cancer (CRC) during high-fat diet-induced obesity. In addition, we will cover how a high-fat diet can drive the expansion of genotoxin-producing Escherichia coli by altering intestinal epithelial cell metabolism during gut infammation conditions.
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Citations
Citations to this article as recorded by- Wheat β-glucan reduces obesity and hyperlipidemia in mice with high-fat and high-salt diet by regulating intestinal flora
Min Li, Qingshan Wang, Xiuwei Zhang, Kaikai Li, Meng Niu, Siming Zhao
International Journal of Biological Macromolecules.2025; 288: 138754. CrossRef - Microbial Metabolites-induced Epigenetic Modifications for Inhibition of Colorectal Cancer: Current Status and Future Perspectives
Vaibhav Singh, Ekta Shirbhate, Rakesh Kore, Subham Vishwakarma, Shadiya Parveen, Ravichandran Veerasamy, Amit K Tiwari, Harish Rajak
Mini-Reviews in Medicinal Chemistry.2025; 25(1): 76. CrossRef - Deciphering the impact of dietary habits and behavioral patterns on colorectal cancer
Qihang Yuan, Jiahua Liu, Xinyu Wang, Chunchun Du, Yao Zhang, Lin Lin, Chengfang Wang, Zhijun Hong
International Journal of Surgery.2025; 111(3): 2603. CrossRef - Integrating single-cell with transcriptome-proteome Mendelian randomization reveals colorectal cancer targets
Song Wang, Xin Yao, Shenshen Li, Shanshan Wang, Xuyu Huang, Jing Zhou, Xiao Li, Jieying Wen, Weixuan Lan, Yunsi Huang, Hao Li, Yunlong Sun, Xiaoqian Zhao, Qiaoling Chen, Xuedong Han, Ziming Zhu, Xinyue Zhang, Tao Zhang
Discover Oncology.2025;[Epub] CrossRef - Parabacteroides johnsonii inhibits the onset and progression of colorectal cancer by modulating the gut microbiota
Jing Liu, Yong Zhang, Linxiang Xu, Guoli Gu, Zhiwei Dong
Journal of Translational Medicine.2025;[Epub] CrossRef - Differences in the faecal microbiome of obese and non-obese pregnant women: a matched cohort study in Sweden
Evangelos Patavoukas, Bangzhuo Tong, Unnur Guðnadóttir, Kyriakos Charalampous, Nele Brusselaers, Ina Schuppe-Koistinen, Lars Engstrand, Emma Fransson, Eva Wiberg-Itzel, Luisa Hugerth
BMC Microbiology.2025;[Epub] CrossRef - High-Fat Diet: A Paradoxical Factor in the Setting of Type 1 Diabetes
Wan-Ying Lu, Shan-Jie Rong, Shi-Wei Liu, Chun-Liang Yang, Yue-Chen Liu, Heba H Al-Siddiqi, Fei Sun, Cong-Yi Wang
Nutrition Reviews.2025;[Epub] CrossRef - Molecular Mechanisms of Skatole-Induced Inflammatory Responses in Intestinal Epithelial Caco-2 Cells: Implications for Colorectal Cancer and Inflammatory Bowel Disease
Katsunori Ishii, Kazuma Naito, Dai Tanaka, Yoshihito Koto, Koichi Kurata, Hidehisa Shimizu
Cells.2024; 13(20): 1730. CrossRef - Research Progress on the Relationship between Intestinal Flora and Gastrointestinal Malignancy
军 陈
Advances in Clinical Medicine.2024; 14(11): 262. CrossRef - Host-Associated Microbiome
Woo Jun Sul
Journal of Microbiology.2024; 62(3): 135. CrossRef
- Wheat β-glucan reduces obesity and hyperlipidemia in mice with high-fat and high-salt diet by regulating intestinal flora
- COVID-19 vaccine development based on recombinant viral and bacterial vector systems: combinatorial effect of adaptive and trained immunity
- Mi-Hyun Lee , Bum-Joon Kim
- J. Microbiol. 2022;60(3):321-334. Published online February 14, 2022
- DOI: https://doi.org/10.1007/s12275-022-1621-2
- 416 View
- 0 Download
- 12 Web of Science
- 14 Crossref
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Abstract
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- Severe acute respiratory syndrome coronavirus 2 virus (SARSCoV- 2) infection, which causes coronavirus disease 2019 (COVID-19), has led to many cases and deaths worldwide. Therefore, a number of vaccine candidates have been developed to control the COVID-19 pandemic. Of these, to date, 21 vaccines have received emergency approval for human use in at least one country. However, the recent global emergence of SARS-CoV-2 variants has compromised the efficacy of the currently available vaccines. To protect against these variants, the use of vaccines that modulate T cell-mediated immune responses or innate immune cell memory function, termed trained immunity, is needed. The major advantage of a vaccine that uses bacteria or viral systems for the delivery of COVID-19 antigens is the ability to induce both T cell-mediated and humoral immune responses. In addition, such vaccine systems can also exert off-target effects via the vector itself, mediated partly through trained immunity; compared to other vaccine platforms, suggesting that this approach can provide better protection against even vaccine escape variants. This review presents the current status of the development of COVID-19 vaccines based on recombinant viral and bacterial delivery systems. We also discuss the current status of the use of licensed live vaccines for other infections, including BCG, oral polio and MMR vaccines, to prevent COVID-19 infections.
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Citations
Citations to this article as recorded by- Enhancement of immunogenicity of SARS-CoV-2 spike protein expressed in Escherichia coli by fusion of the CRM197 functional domain
Xibing Yu, Yinmeng Yang, Miao Zhang, Qiantong Shen, Yun Zhu, Tong An, Siqi Li, Kexin Zhang, Shuaiyao Lu, Shaohong Lu, Fangcheng Zhuang, Meng Gao
Frontiers in Microbiology.2025;[Epub] CrossRef - Real-time infectious disease endurance indicator system for scientific decisions using machine learning and rapid data processing
Shivendra Dubey, Dinesh Kumar Verma, Mahesh Kumar
PeerJ Computer Science.2024; 10: e2062. CrossRef - What is the role of microbial biotechnology and genetic engineering in medicine?
Fernando Santos‐Beneit
MicrobiologyOpen.2024;[Epub] CrossRef - Previous BCG vaccination is associated with less severe clinical progression of COVID-19
Susan Martins Pereira, Florisneide Rodrigues Barreto, Ramon Andrade de Souza, Carlos Antonio de Souza Teles Santos, Marcos Pereira, Enny Santos da Paixão, Carla Cristina Oliveira de Jesus Lima, Marcio Santos da Natividade, Ana Angélica Bulcão Portela Lind
BMC Medicine.2023;[Epub] CrossRef - COVID-19 Incidence Proportion as a Function of Regional Testing Strategy, Vaccination Coverage, and Vaccine Type
Areg A. Totolian, Viacheslav S. Smirnov, Alexei A. Krasnov, Edward S. Ramsay, Vladimir G. Dedkov, Anna Y. Popova
Viruses.2023; 15(11): 2181. CrossRef - The Cellular and Epigenetic Aspects of Trained Immunity and Prospects for Creation of Universal Vaccines on the Eve of More Frequent Pandemics
I. V. Alekseenko, R. G. Vasilov, L. G. Kondratyeva, S. V. Kostrov, I. P. Chernov, E. D. Sverdlov
Russian Journal of Genetics.2023; 59(9): 851. CrossRef - Coronavirus XBB.1.5 as an Indicator of the Long-Term Continuation of the Covid-19 pandemic. What Next for Vaccination?
E. P. Kharchenko
Epidemiology and Vaccinal Prevention.2023; 22(2): 12. CrossRef - Extracellular Vesicle-Based SARS-CoV-2 Vaccine
Yasunari Matsuzaka, Ryu Yashiro
Vaccines.2023; 11(3): 539. CrossRef - Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
Journal of Microbiology and Biotechnology.2023; 33(12): 1587. CrossRef - Leishmania tarentolae: a vaccine platform to target dendritic cells and a surrogate pathogen for next generation vaccine research in leishmaniases and viral infections
Claudio Bandi, Jairo Alfonso Mendoza-Roldan, Domenico Otranto, Alessandro Alvaro, Viviane Noll Louzada-Flores, Massimo Pajoro, Ilaria Varotto-Boccazzi, Matteo Brilli, Alessandro Manenti, Emanuele Montomoli, Gianvincenzo Zuccotti, Sara Epis
Parasites & Vectors.2023;[Epub] CrossRef - Cellular and Epigenetic Aspects of Trained Immunity and Prospects for Creation of Universal Vaccines in the Face of Increasingly Frequent Pandemics
I. V. Alekseenko, R. G. Vasilov, L. G. Kondratyeva, S. V. Kostrov, I. P. Chernov, E. D. Sverdlov
Генетика.2023; 59(9): 981. CrossRef - BNT162b2 COVID-19 vaccination in children alters cytokine responses to heterologous pathogens and Toll-like receptor agonists
Andrés Noé, Thanh D. Dang, Christine Axelrad, Emma Burrell, Susie Germano, Sonja Elia, David Burgner, Kirsten P. Perrett, Nigel Curtis, Nicole L. Messina
Frontiers in Immunology.2023;[Epub] CrossRef - The Natural Effect of BCG Vaccination on COVID-19: The Debate Continues
Wenping Gong, Huiru An, Jie Wang, Peng Cheng, Yong Qi
Frontiers in Immunology.2022;[Epub] CrossRef - Two years of COVID-19 pandemic: where are we now?
Jinjong Myoung
Journal of Microbiology.2022; 60(3): 235. CrossRef
- Enhancement of immunogenicity of SARS-CoV-2 spike protein expressed in Escherichia coli by fusion of the CRM197 functional domain
Journal Article
- Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
- Young Joon Oh , Joon Yong Kim , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
- J. Microbiol. 2021;59(5):460-466. Published online April 28, 2021
- DOI: https://doi.org/10.1007/s12275-021-0513-1
- 414 View
- 0 Download
- 1 Web of Science
- 2 Crossref
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Abstract
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- To date, all species in the genus Salicibibacter have been isolated in Korean commercial kimchi. We aimed to describe the taxonomic characteristics of two strains, NKC5-3T and NKC21-4T, isolated from commercial kimchi collected from various regions in the Republic of Korea. Cells of these strains were rod-shaped, Gram-positive, aerobic, oxidase- and catalase- positive, non-motile, halophilic, and alkalitolerant. Both strains, unlike other species of the genus Salicibibacter, could not grow without NaCl. Strains NKC5-3T and NKC21-4T could tolerate up to 25.0% (w/v) NaCl (optimum 10%) and grow at pH 7.0–10.0 (optimum 8.5) and 8.0–9.0 (optimum 8.5), respectively; they showed 97.1% 16S rRNA gene sequence similarity to each other and were most closely related to S. kimchii NKC1-1T (97.0% and 96.8% similarity, respectively). The genome of strain NKC5-3T was nearly 4.6 Mb in size, with 4,456 protein-coding sequences (CDSs), whereas NKC21-4T genome was nearly 3.9 Mb in size, with 3,717 CDSs. OrthoANI values between the novel strains and S. kimchii NKC1-1T were far lower than the species demarcation threshold. NKC5-3T and NKC21-4T clustered together to form branches that were distinct from the other Salicibibacter species. The major fatty acids in these strains were anteiso-C15:0 and anteiso-C17:0, and the predominant menaquinone was menaquinone-7. The polar lipids of NKC5-3T included diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), and five unidentified phospholipids (PL), and those of NKC21-4T included DPG, PG, seven unidentified PLs, and an unidentified lipid. Both isolates had DPG, which is the first case in the genus Salicibibacter. The genomic G + C content of strains NKC5-3T and NKC21-4T was 44.7 and 44.9 mol%, respectively. Based on phenotypic, genomic, phylogenetic, and chemotaxonomic analyses, strains NKC5-3T (= KACC 22040T = DSM 111417T) and NKC21-4T (= KACC 22041T = DSM 111418T) represent two novel species of the genus Salicibibacter, for which the names Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov. are proposed.
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Citations
Citations to this article as recorded by-
In-silico study of molecular adaptations in halophilic Cas9
Anisha Debnath, Aveepsa Sengupta, Sujata Rudrapal, Ashutosh Kumar, Mamta Rani
Letters in Applied Microbiology.2025;[Epub] CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
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In-silico study of molecular adaptations in halophilic Cas9
Review
- Rediscovery of antimicrobial peptides as therapeutic agents
- Minkyung Ryu , Jaeyeong Park , Ji-Hyun Yeom , Minju Joo , Kangseok Lee
- J. Microbiol. 2021;59(2):113-123. Published online February 1, 2021
- DOI: https://doi.org/10.1007/s12275-021-0649-z
- 531 View
- 1 Download
- 31 Web of Science
- 28 Crossref
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Abstract
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- In recent years, the occurrence of antibiotic-resistant pathogens is increasing rapidly. There is growing concern as the development of antibiotics is slower than the increase in the resistance of pathogenic bacteria. Antimicrobial peptides (AMPs) are promising alternatives to antibiotics. Despite their name, which implies their antimicrobial activity, AMPs have recently been rediscovered as compounds having antifungal, antiviral, anticancer, antioxidant, and insecticidal effects. Moreover, many AMPs are relatively safe from toxic side effects and the generation of resistant microorganisms due to their target specificity and complexity of the mechanisms underlying their action. In this review, we summarize the history, classification, and mechanisms of action of AMPs, and provide descriptions of AMPs undergoing clinical trials. We also discuss the obstacles associated with the development of AMPs as therapeutic agents and recent strategies formulated to circumvent these obstacles.
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Citations
Citations to this article as recorded by- A stitch in time: Sustainable and eco-friendly solutions for kiwifruit bacterial canker
Muhammad Asif, Shuang Liang, Hu RenJian, Xin Xie, Zhibo Zhao
Physiological and Molecular Plant Pathology.2025; 136: 102506. CrossRef - Mechanistic insights on the antibacterial action of the kyotorphin peptide derivatives revealed by in vitro studies and Galleria mellonella proteomic analysis
Vitor M. de Andrade, Vitor D.M. de Oliveira, Uilla Barcick, Vasanthakumar G. Ramu, Montserrat Heras, Eduard R. Bardají, Miguel A.R.B. Castanho, André Zelanis, Aline Capella, Juliana C. Junqueira, Katia Conceição
Microbial Pathogenesis.2024; 189: 106607. CrossRef - Antimicrobial Peptides Derived from Bacteria: Classification, Sources, and Mechanism of Action against Multidrug-Resistant Bacteria
Raynichka Mihaylova-Garnizova, Slavena Davidova, Yordan Hodzhev, Galina Satchanska
International Journal of Molecular Sciences.2024; 25(19): 10788. CrossRef - A Zeolitic Imidazolate Framework-Based Antimicrobial Peptide Delivery System with Enhanced Anticancer Activity and Low Systemic Toxicity
Jingwen Jiang, Kaderya Kaysar, Yanzhu Pan, Lijie Xia, Jinyao Li
Pharmaceutics.2024; 16(12): 1591. CrossRef - Enhancing Antimicrobial Peptide Activity through Modifications of Charge, Hydrophobicity, and Structure
Przemysław Gagat, Michał Ostrówka, Anna Duda-Madej, Paweł Mackiewicz
International Journal of Molecular Sciences.2024; 25(19): 10821. CrossRef - Studies of antibacterial activity (in vitro and in vivo) and mode of action for des-acyl tridecaptins (DATs)
Cédric Couturier, Quentin Ronzon, Giulia Lattanzi, Iain Lingard, Sebastien Coyne, Veronique Cazals, Nelly Dubarry, Stephane Yvon, Corinne Leroi-Geissler, Obdulia Rabal Gracia, Joanne Teague, Sylvie Sordello, David Corbett, Caroline Bauch, Chantal Monlong,
European Journal of Medicinal Chemistry.2024; 265: 116097. CrossRef - Antimicrobial Peptides: The Game-Changer in the Epic Battle Against Multidrug-Resistant Bacteria
Helal F. Hetta, Nizar Sirag, Shumukh M. Alsharif, Ahmad A. Alharbi, Tala T. Alkindy, Alanoud Alkhamali, Abdullah S. Albalawi, Yasmin N. Ramadan, Zainab I. Rashed, Fawaz E. Alanazi
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Journal Articles
- Characterization of a novel dsRNA mycovirus of Trichoderma atroviride NFCF377 reveals a member of “Fusagraviridae” with changes in antifungal activity of the host fungus
- Jeesun Chun , Byeonghak Na , Dae-Hyuk Kim
- J. Microbiol. 2020;58(12):1046-1053. Published online October 23, 2020
- DOI: https://doi.org/10.1007/s12275-020-0380-1
- 390 View
- 2 Download
- 12 Web of Science
- 11 Crossref
-
Abstract
PDF
- Trichoderma atroviride is a common fungus found in various ecosystems that shows mycoparasitic ability on other fungi. A novel dsRNA virus was isolated from T. atroviride NFCF377 strain and its molecular features were analyzed. The viral genome consists of a single segmented double-stranded RNA and is 9,584 bp in length, with two discontinuous open reading frames (ORF1 and ORF2). A mycoviral structural protein and an RNA-dependent RNA polymerase (RdRp) are encoded by ORF1 and ORF2, respectively, between which is found a canonical shifty heptameric signal motif (AAAAAAC) followed by an RNA pseudoknot. Analysis of sequence similarity and phylogeny showed that it is closely related to members of the proposed family “Fusagraviridae”, with a highest similarity to the Trichoderma atroviride mycovirus 1 (TaMV1). Although the sequence similarity of deduced amino acid to TaMV1 was evident, sequence deviations were distinctive at untranslated regions (UTRs) due to the extended size. Thus, we inferred this dsRNA to be a different strain of Trichoderma atroviride mycovirus 1 (TaMV1-NFCF377). Electron microscopy image exhibited an icosahedral viral particle of 40 nm diameter. Virus-cured isogenic isolates were generated and no differences in growth rate, colony morphology, or conidia production were observed between virus-infected and virus-cured strains. However, culture filtrates of TaMV1- NFCF377-infected strain showed enhanced antifungal activity against the plant pathogen Rhizoctonia solani but not to edible mushroom Pleurotus ostreatus. These results suggested that TaMV1-NFCF377 affected the metabolism of the fungal host to potentiate antifungal compounds against a plant pathogen, but this enhanced antifungal activity appeared to be species-specific.
-
Citations
Citations to this article as recorded by- Molecular characteristics of a novel alternavirus from Trichoderma harzianum
Jeesun Chun, Yo-Han Ko, Dae-Hyuk Kim
Archives of Virology.2026;[Epub] CrossRef - Complete genome sequence of a novel endornavirus from Rhizoctonia solani AG-1 IA isolate MY-JK-1
Shanshan Xu, Zhenmeng Zhou, Chengmeng Shen, Li Luo, Genhua Yang
Archives of Virology.2025;[Epub] CrossRef - Mycoviruses in Entomopathogenic Fungi
Matheus da Silva Camargo, Sam Edwards, Maressa O. Henrique, Urja Solanki, Tae Young Shin, Bo Huang, Henrik H. De Fine Licht, Marcio C. Silva-Filho, Augusto Schrank, Robert H. A. Coutts, Ioly Kotta-Loizou
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Biological Control.2024; 188: 105440. CrossRef -
An Outstandingly Rare Occurrence of Mycoviruses in Soil Strains of the Plant-Beneficial Fungi from the Genus
Trichoderma
and a Novel
Polymycoviridae
Isolate
Chenchen Liu, Xiliang Jiang, Zhaoyan Tan, Rongqun Wang, Qiaoxia Shang, Hongrui Li, Shujin Xu, Miguel A. Aranda, Beilei Wu, Lea Atanasova
Microbiology Spectrum.2023;[Epub] CrossRef - Sixteen Novel Mycoviruses Containing Positive Single-Stranded RNA, Double-Stranded RNA, and Negative Single-Stranded RNA Genomes Co-Infect a Single Strain of Rhizoctonia zeae
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- [PROTOCOL]A Signature-Tagged Mutagenesis (STM)-based murine-infectivity assay for Cryptococcus neoformans
- Kwang-Woo Jung , Kyung-Tae Lee , Yong-Sun Bahn
- J. Microbiol. 2020;58(10):823-831. Published online September 29, 2020
- DOI: https://doi.org/10.1007/s12275-020-0341-8
- 398 View
- 0 Download
- 2 Web of Science
- 2 Crossref
-
Abstract
PDF
-
Signature-tagged mutagenesis (STM) is a high-throughput
genetic technique that can be used to investigate the function
of genes by constructing a large number of mutant strains
with unique DNA identification tags, pooling them, and screening
them for a particular phenotypic trait. STM was first designed
for the identification of genes that contribute to the
virulence or infectivity of a pathogen in its host. Recently, this
method
has also been applied for the identification of mutants with specific phenotypes, such as antifungal drug resistance and proliferation. In the present study, we describe an STM
method
for the identification of genes contributing to the infectivity of Cryptococcus neoformans using a mutant library, in which each strain was tagged with a unique DNA sequence. -
Citations
Citations to this article as recorded by- Genome-wide phenotypic profiling of transcription factors and identification of novel targets to control the virulence of Vibrio vulnificus
Dayoung Sung, Garam Choi, Minji Ahn, Hokyung Byun, Tae Young Kim, Hojun Lee, Zee-Won Lee, Ji Yong Park, Young Hyun Jung, Ho Jae Han, Sang Ho Choi
Nucleic Acids Research.2025;[Epub] CrossRef - Zinc-binding domain mediates pleiotropic functions of Yvh1 in Cryptococcus neoformans
Jae-Hyung Jin, Myung Kyung Choi, Hyun-Soo Cho, Yong-Sun Bahn
Journal of Microbiology.2021; 59(7): 658. CrossRef
- Genome-wide phenotypic profiling of transcription factors and identification of novel targets to control the virulence of Vibrio vulnificus
- In vitro disinfection efficacy and clinical protective effects of common disinfectants against acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio isolates in Pacific white shrimp Penaeus vannamei
- Peizhuo Zou , Qian Yang , Hailiang Wang , Guosi Xie , Zhi Cao , Xing Chen , Wen Gao , Jie Huang
- J. Microbiol. 2020;58(8):675-686. Published online July 27, 2020
- DOI: https://doi.org/10.1007/s12275-020-9537-1
- 449 View
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- 4 Web of Science
- 4 Crossref
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Abstract
PDF
- Acute hepatopancreatic necrosis disease (AHPND) is one of the most significant bacterial diseases in global shrimp culture, causing severe economic losses. In the present study, we carried out in vitro antimicrobial tests to investigate the disinfection efficacy of 14 common disinfectants toward different AHPND-causing Vibrio spp., including eight isolates of V. parahaemolyticus, four isolates of V. campbellii, and one isolate of V. owensii. Polyhexamethylene biguanidine hydrochloride (PHMB) was revealed to possess the strongest inhibitory activity. Through analyzing and evaluating the results of antimicrobial tests and acute toxicity test, we selected PHMB and hydrogen peroxide (H2O2) for further clinical protection test. Clinical manifestations indicated that both PHMB (2 mg/L and 4 mg/L) and H2O2 (12 mg/L) could effectively protect juvenile Penaeus vannamei from the infection of V. parahaemolyticus isolate Vp362 at 106 CFU/ml, and the survival rate was over 80%. When the bacterial concentration was reduced to 105 CFU/ml, 104 CFU/ml, and 103 CFU/ml, the survival rate after treated by 1 mg/L PHMB was 64.44%, 93.33%, and 100%, respectively. According to the results, PHMB and H2O2 showed a lower toxicity while a better protection activity, particularly against a lower concentration of the pathogens. Therefore, these two disinfectants are proved to be promising disinfectants that can be applied to prevent and control AHPND in shrimp culture. Moreover, the methods of this study also provided valuable information for the prevention of other important bacterial diseases and suggested a reliable means for screening potential drugs in aquaculture.
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Citations
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Lanting Wu, Chunyuan Wang, Yingeng Wang, Yongxiang Yu, Zheng Zhang, Cuiping Ma, Xiaojun Rong, Ling Chen, Meijie Liao, Yapeng Yang
Biology.2025; 14(5): 470. CrossRef - Comparative disinfection efficacy in aquaculture: novel methylene bis(thiocyanate) vs. conventional trichloroisocyanuric acid against Aeromonas hydrophila
Guang Yang, Ying Huang, Ning Ma, Kai Li, Xiao-mei Wang, Lian-bo Zhang, Wen-bo Yang, Wan-li Zhang, Lei Xia, Hong-Yu Zhang, Li-lai Yuan
Frontiers in Microbiology.2025;[Epub] CrossRef - Basigin binds bacteria and activates Dorsal signaling to promote antibacterial defense in Penaeus vannamei
Linwei Yang, Zi-ang Wang, Yushi Gan, Hongliang Zuo, Hengwei Deng, Shaoping Weng, Jianguo He, Xiaopeng Xu
Fish & Shellfish Immunology.2023; 142: 109123. CrossRef - Clinical protective effects of polyhexamethylene biguanide hydrochloride (PHMB) against Vibrio parahaemolyticus causing translucent post-larvae disease (VTPD) in Penaeus vannamei
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- Burkholderia thailandensis outer membrane vesicles exert antimicrobial activity against drug-resistant and competitor microbial species
- Yihui Wang , Joseph P. Hoffmann , Chau-Wen Chou , Kerstin Höner zu Bentrup , Joseph A. Fuselier , Jacob P. Bitoun , William C. Wimley , Lisa A. Morici
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- 439 View
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Abstract
PDF
- Gram-negative bacteria secrete outer membrane vesicles (OMVs) that play critical roles in intraspecies, interspecies, and bacteria-environment interactions. Some OMVs, such as those produced by Pseudomonas aeruginosa, have previously been shown to possess antimicrobial activity against competitor species. In the current study, we demonstrate that OMVs from Burkholderia thailandensis inhibit the growth of drug-sensitive and drug-resistant bacteria and fungi. We show that a number of antimicrobial compounds, including peptidoglycan hydrolases, 4-hydroxy-3-methyl-2-(2-nonenyl)- quinoline (HMNQ) and long-chain rhamnolipid are present in or tightly associate with B. thailandensis OMVs. Furthermore, we demonstrate that HMNQ and rhamnolipid possess antimicrobial and antibiofilm properties against methicillin- resistant Staphylococcus aureus (MRSA). These findings indicate that B. thailandensis secretes antimicrobial OMVs that may impart a survival advantage by eliminating competition. In addition, bacterial OMVs may represent an untapped resource of novel therapeutics effective against biofilm- forming and multidrug-resistant organisms.
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- Role of putative virulence traits of Campylobacter jejuni in regulating differential host immune responses
- Ankita Singh , Amirul Islam Mallick
- J. Microbiol. 2019;57(4):298-309. Published online February 22, 2019
- DOI: https://doi.org/10.1007/s12275-019-8165-0
- 342 View
- 0 Download
- 15 Web of Science
- 12 Crossref
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Abstract
PDF
- Among the major enteric pathogens, Campylobacter jejuni is considered an important source of diarrheal illness in humans. In contrast to the acute gastroenteritis in humans, C. jejuni exhibits prolonged cecal colonization at a high level with little or no pathology in chickens. Although several known virulence determinants of C. jejuni have been found to be associated with a higher degree of pathogenesis in humans, to date, little is known about their functions in the persistent colonization of chickens. The present study was undertaken to assess the role of C. jejuni in imparting differential host immune responses in human and chicken cells. Based on the abundance of major genes encoding virulence factors (GEVFs), we used a particular isolate that harbors the cadF, flaA, peb1, racR, ciaB, cdtB, and hcp genes. This study showed that hypervirulent C. jejuni isolate that encodes a functional type VI secretion system (T6SS) has a greater ability to invade and create characteristic “attaching and effacing” lesions in human INT407 compared to primary chicken embryo intestinal cells (CEICs). Furthermore, we demonstrated that the higher bacterial invasion in human INT407 triggered higher levels of expression of major proinflammatory cytokines, such as IL- 1β and IL-6, and significant downregulation of IL-17A gene expression (P ≤ 0.05). The findings of the present study suggest that the enhanced ability of C. jejuni to invade human cells is tightly regulated by proinflammatory cytokines in the gut and possibly holds the keys to the observed differences in pathogenesis between human and chicken cells.
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Citations
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- [PROTOCOL] Drosophila melanogaster as a polymicrobial infection model for Pseudomonas aeruginosa and Staphylococcus aureus
- Young-Joon Lee , Hye-Jeong Jang , In-Young Chung , You-Hee Cho
- J. Microbiol. 2018;56(8):534-541. Published online July 25, 2018
- DOI: https://doi.org/10.1007/s12275-018-8331-9
- 471 View
- 1 Download
- 17 Crossref
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Abstract
PDF
- Non-mammalian infection models have been developed over the last two decades, which is a historic milestone to understand the molecular basis of bacterial pathogenesis. They also provide small-scale research platforms for identification of virulence factors, screening for antibacterial hits, and evaluation of antibacterial efficacy. The fruit fly, Drosophila melanogaster is one of the model hosts for a variety of bacterial pathogens, in that the innate immunity pathways and tissue physiology are highly similar to those in mammals. We here present a relatively simple protocol to assess the key aspects of the polymicrobial interaction in vivo between the human opportunistic pathogens, Pseudomonas aeruginosa and Staphylococcus aureus, which is based on the systemic infection by needle pricking at the dorsal thorax of the flies. After infection, fly survival and bacteremia over time for both P. aeruginosa and S. aureus within the infected flies can be monitored as a measure of polymicrobial virulence potential. The infection takes ~24 h including bacterial cultivation. Fly survival and bacteremia are assessed using the infected flies that are monitored up to ~60 h post-infection. These methods can be used to identify presumable as well as unexpected phenotypes during polymicrobial interaction between P. aeruginosa and S. aureus mutants, regarding bacterial pathogenesis and host immunity.
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Review
- REVIEW] The Ruminococci: key symbionts of the gut ecosystem
- Alex J. La Reau , Garret Suen
- J. Microbiol. 2018;56(3):199-208. Published online February 28, 2018
- DOI: https://doi.org/10.1007/s12275-018-8024-4
- 661 View
- 0 Download
- 260 Crossref
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Abstract
PDF
- Mammalian gut microbial communities form intricate mutualisms with their hosts, which have profound implications on overall health. One group of important gut microbial mutualists are bacteria in the genus Ruminococcus, which serve to degrade and convert complex polysaccharides into a variety of nutrients for their hosts. Isolated decades ago from the bovine rumen, ruminococci have since been cultured from other ruminant and non-ruminant sources, and next-generation sequencing has further shown their distribution to be widespread in a diversity of animal hosts. While most ruminococci that have been studied are those capable of degrading cellulose, much less is known about non-cellulolytic, nonruminant- associated species, such as those found in humans. Furthermore, a mechanistic understanding of the role of Ruminococcus spp. in their respective hosts is still a work in progress. This review highlights the broad work done on species within the genus Ruminococcus with respect to their physiology, phylogenetic relatedness, and their potential impact on host health.
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Yajun Qiao, Lin Rong, Hanxi Chen, Juan Guo, Guoqiang Li, Qiannan Wang, Hongtao Bi, Lixin Wei, Tingting Gao
Frontiers in Nutrition.2025;[Epub] CrossRef - Ruminococcus bromii alleviates constipation by pullulanase-driven resistant starch degradation and microbiota modulation
Rong Li, Qianqian Yang, Junqing He, Min Li, Qiang Ding, Kun Tian, Wei Yang, Guoxing Zhang, Aihua Guo, Man Gu, Qin Yu, Haidong Jia, Dezheng Xu, Hongju Yang, Huaping Xie, Weihua Chen, Zhi Liu
npj Biofilms and Microbiomes.2025;[Epub] CrossRef - Genetic insights into the gut microbiota, herpes zoster, and postherpetic neuralgia: a bidirectional two-sample Mendelian randomization study
Zhimin Deng, Yali Liu, Haiying Wang, Tianyuan Luo
Frontiers in Genetics.2024;[Epub] CrossRef - Effects of dietary addition of ellagic acid on rumen metabolism, nutrient apparent digestibility, and growth performance in Kazakh sheep
Wenjie Zhang, Feier Ren, Changjiang Zang, Fan Yang, Xuanyue Li, Xinxin Huang, Kaixu Chen, Xiaobin Li
Frontiers in Veterinary Science.2024;[Epub] CrossRef - WITHDRAWN: Isolation and Functional Study of Efficient Cellulose Degrading Bacteria from Horse Cecum Contents
Xiaoyue Li, Hui Li, Xiaoli Fang, Cunyuan Li, Jinming Yu, Jihong Dai, Xia Liu, Kaiping Liu, Ruyue He, Zhuang Liu, Wei Ni, Shengwei Hu
Heliyon.2024; : e28437. CrossRef - Crosstalk between innate immunity and rumen-fecal microbiota under the cold stress in goats
Tao Luo, Jiangjiang Zhu, Kerui Li, Yongtao Li, Jun Li, Yu Chen, Hengbo Shi
Frontiers in Immunology.2024;[Epub] CrossRef - Development and evaluation of an ensemble model to identify host-related metadata from fecal microbiota of zoo-housed mammals
Franziska Zoelzer, Daniel dos Santos Monteiro, Paul Wilhelm Dierkes
Frontiers in Mammal Science.2024;[Epub] CrossRef - Evaluating the potential prebiotic effects of umbu-cajá (Spondias spp.) fruit processing by-product flour on the human intestinal microbiota
Jordana Nunes de Oliveira, Thatyane Mariano Rodrigues de Albuquerque, Marcos dos Santos Lima, Elma Regina Silva de Andrade Wartha, Mariana Monteiro, Yuri Mangueira do Nascimento, Josean Fechine Tavares, Marcelo Sobral da Silva, Evandro Leite de Souza, Jan
LWT.2024; 210: 116764. CrossRef - Traditional Chinese medicine improved diabetic kidney disease through targeting gut microbiota
Xia-Qing Wu, Lei Zhao, Yan-Long Zhao, Xin-Yao He, Liang Zou, Ying-Yong Zhao, Xia Li
Pharmaceutical Biology.2024; 62(1): 423. CrossRef - Natural Foraging Selection and Gut Microecology of Two Subterranean Rodents from the Eurasian Steppe in China
Zhenghaoni Shang, Kai Chen, Tingting Han, Fan Bu, Shanshan Sun, Na Zhu, Duhu Man, Ke Yang, Shuai Yuan, Heping Fu
Animals.2024; 14(16): 2334. CrossRef - Differential immunological responses in lamb rumen and colon to alfalfa hay and wheat straw in a concentrate-rich diet: insights into microbe-host interactions
Kefyalew Gebeyew, Hui Mi, Yong Liu, Yongbin Liu, Biao Wang, Teka Feyera, Tan Zhiliang, Zhixiong He, Tricia A. Van Laar
mSystems.2024;[Epub] CrossRef - Deciphering the influence of gut and oral microbiomes on menopause for healthy aging
Shuting Yu, Feiling Huang, Yixuan Huang, Fangxu Yan, Yi Li, Shenglong Xu, Yao Zhao, Xinlei Zhang, Rong Chen, Xingming Chen, Peng Zhang
Journal of Genetics and Genomics.2024;[Epub] CrossRef - Multi-omics analyses reveal rumen microbes and secondary metabolites that are unique to livestock species
Victor O. Omondi, Geoffrey O. Bosire, John M. Onyari, Caleb Kibet, Samuel Mwasya, Vanessa N. Onyonyi, Merid N. Getahun, James R. Brown
mSystems.2024;[Epub] CrossRef - Liberated bioactive bound phenolics during in vitro gastrointestinal digestion and colonic fermentation boost the prebiotic effects of triticale insoluble dietary fiber
Chunyan Hou, Lianjia Zhao, Muhua Ji, Jingjing Yu, Yan Di, Qian Liu, Zhengmao Zhang, Lijun Sun, Xuebo Liu, Yutang Wang
Food Chemistry.2024; 457: 140124. CrossRef - Mechanistic insights into inositol-mediated rumen function promotion and metabolic alteration using in vitro and in vivo models
Guopei Yin, Zhe Sun, Zhanqing Wang, Yuanhong Xia, Long Cheng, Guixin Qin, Natnael D. Aschalew, Hongyun Liu, Xuefeng Zhang, Qilu Wu, Weigang Zhang, Wei Zhao, Tao Wang, Yuguo Zhen
Frontiers in Veterinary Science.2024;[Epub] CrossRef - Gut Microbial Dysbiosis Differs in Two Distinct Cachectic Tumor-Bearing Models Consuming the Same Diet
Lauri O. Byerley, Brittany Lorenzen, Hsiao-Man Chang, William G. Hartman, Michael J. Keenan, Ryan Page, Meng Luo, Scot E. Dowd, Christopher M. Taylor
Nutrients.2024; 16(7): 1076. CrossRef - In Silico Analysis of Probiotic Bacteria Changes Across COVID-19 Severity Stages
Clarissa Reginato Taufer, Juliana da Silva, Pabulo Henrique Rampelotto
Microorganisms.2024; 12(11): 2353. CrossRef - Assessing the impact of hatching system and body weight on the growth performance, caecal short-chain fatty acids, and microbiota composition and functionality in broilers
Muhammad Zeeshan Akram, Ester Arévalo Sureda, Luke Comer, Matthias Corion, Nadia Everaert
Animal Microbiome.2024;[Epub] CrossRef - Effect of Raw and Cooked Green Bananas on Cecal Fermentation Characteristics in Rats
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Xitan Lin, Xiaoyan Hu, Jing Zhang, Jing Luo, Gang Qin, Liang Jiang
Brazilian Journal of Otorhinolaryngology.2024; 90(6): 101491. CrossRef -
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Manas Ranjan Saha, Priyankar Dey
Archives of Physiology and Biochemistry.2024; 130(1): 70. CrossRef - Alteration of the gut microbial composition of critically endangered Malayan tigers (Panthera tigris jacksoni) in captivity during enrichment phase
Mohamad Khairulmunir, Millawati Gani, Abd Rahman Mohd-Ridwan, Kayal Vizi Karuppannan, Muhammad Abu Bakar Abdul-Latiff, Badrul Munir Md-Zain
Molecular Biology Reports.2024;[Epub] CrossRef - Influence of Cuticular Waxes from Triticale on Rumen Fermentation: A Metabolomic and Microbiome Profiling Study
Jiahao Huang, Jiawei Xu, Ruixin Wu, Jinjing Wang, Jianfeng Yang, Yuan Li, Bo Wang, Wangdan Xiong, Yanjun Guo
Journal of Agricultural and Food Chemistry.2024; 72(3): 1592. CrossRef - Metabolic and inflammatory perturbation of diabetes associated gut dysbiosis in people living with and without HIV infection
Kai Luo, Brandilyn A. Peters, Jee-Young Moon, Xiaonan Xue, Zheng Wang, Mykhaylo Usyk, David B. Hanna, Alan L. Landay, Michael F. Schneider, Deborah Gustafson, Kathleen M. Weber, Audrey French, Anjali Sharma, Kathryn Anastos, Tao Wang, Todd Brown, Clary B.
Genome Medicine.2024;[Epub] CrossRef - Oregano Essential Oil as a Natural Plant Additive Affects Growth Performance and Serum Antibody Levels by Regulating the Rumen Microbiota of Calves
Zhihao Luo, Ting Liu, Dongzhu Cairang, Shuru Cheng, Jiang Hu, Bingang Shi, Hui Zhu, Huan Chen, Tao Zhang, Xuejiao Yi
Animals.2024; 14(6): 820. CrossRef - Gut Microbial Communities Are Seasonally Variable in Warm-Climate Lizards Hibernating in the Winter Months
Xiaming Zhu, Neng Jiang, Tingye Mai, Shulin Wu, Yuntao Yao, Yu Du, Chixian Lin, Longhui Lin, Xiang Ji
Microorganisms.2024; 12(10): 1974. CrossRef - Beneficial effects of American ginseng (Panax quinquefolius L.) extract residue as a feed additive on production, health status, and gastrointestinal bacteria in sika deer (Cervus nippon)
Yan Wu, Shuting Zhao, Peihe Zheng, Hanlu Liu, Zhengyi Qu, Wei Hou, Weitao Yuan, Tao Feng, Xiaofeng Zhan, Jinlong Shen, Kaiying Wang
Frontiers in Microbiology.2024;[Epub] CrossRef - The Influence of Increasing Roughage Content in the Diet on the Growth Performance and Intestinal Flora of Jinwu and Duroc × Landrace × Yorkshire Pigs
Gaili Xu, Jing Huang, Wenduo Chen, Ayong Zhao, Jianzhi Pan, Fuxian Yu
Animals.2024; 14(13): 1913. CrossRef - Higher temperatures exacerbate effects of antibiotics on methanogenesis in freshwater sediment
E. Bollinger, P. Schwilden, F. Y. Lai, R. Schulz, M. Bundschuh, S. Filker
Communications Earth & Environment.2024;[Epub] CrossRef - Negative energy balance affects perinatal ewe performance, rumen morphology, rumen flora structure, and placental function
Zhibo Wang, Peiyong Chen, Yaxu Liang, Feng Wang, Yanli Zhang
Journal of Animal Physiology and Animal Nutrition.2024; 108(6): 1747. CrossRef - Gut Microbiota and Biomarkers of Intestinal Barrier Damage in Cirrhosis
Irina Efremova, Roman Maslennikov, Oleg Medvedev, Anna Kudryavtseva, Anastasia Avdeeva, George Krasnov, Filipp Romanikhin, Mikhail Diatroptov, Maria Fedorova, Elena Poluektova, Anna Levshina, Vladimir Ivashkin
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Phytomedicine.2024; 132: 155861. CrossRef - Effects of protein concentration and beta-adrenergic agonists on ruminal bacterial communities in finishing beef heifers
Alison P. Pfau, Madison T. Henniger, Kendall L. Samuelson, Kristin E. Hales, Clint A. Löest, Mike E. Hubbert, Amanda K. Lindholm-Perry, Amanda M. Egert-McLean, Katie M. Mason, Elizabeth A. Shepherd, Brynn H. Voy, Phillip R. Myer, Juan J Loor
PLOS ONE.2024; 19(2): e0296407. CrossRef - Exploring the modulatory effects of brown seaweed meal and extracts on intestinal microbiota and morphology of broiler chickens challenged with heat stress
Fisayo Oretomiloye, Deborah Adewole
Poultry Science.2024; 103(4): 103562. CrossRef - Intestinal microbiota and high-risk antibiotic resistance genes in wild birds with varied ecological traits: Insights from opportunistic direct sampling in Tianjin, China
Tong Liu, Yetong Shao, Xiaoke Pang, Yufei Liu, Xunqiang Mo, Zeyou Chen, Xueqiang Lu
Environmental Research.2024; 263: 120040. CrossRef - A Systematic Review of the Effect of Polyphenols on Alterations of the Intestinal Microbiota and Shared Bacterial Profiles Between Metabolic Syndrome and Acne
Sara Ilari, Saverio Nucera, Lucrezia Morabito, Rosamaria Caminiti, Valeria Mazza, Giovanna Ritorto, Sara Ussia, Lucia Carmela Passacatini, Roberta Macrì, Federica Scarano, Maria Serra, Elisabetta Scali, Jessica Maiuolo, Francesca Oppedisano, Ernesto Palma
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The Journal of Headache and Pain.2024;[Epub] CrossRef - Integrated microbiota–host–metabolome approaches reveal adaptive ruminal changes to prolonged high-grain feeding and phytogenic supplementation in cattle
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Nutrients.2024; 16(6): 891. CrossRef - Causal relationship between gut microbiota and gastric cancer: A two‑sample Mendelian randomization analysis
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Molecular and Clinical Oncology.2024;[Epub] CrossRef - Metabolism of quercitrin in the colon and its beneficial regulatory effects on gut microbiota
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Journal of the Science of Food and Agriculture.2024; 104(15): 9255. CrossRef - Diverse mechanisms by which chemical pollutant exposure alters gut microbiota metabolism and inflammation
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Environment International.2024; 190: 108805. CrossRef - Eimeria infections of plateau pika altered the patterns of temporal alterations in gut bacterial communities
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Journal of Hazardous Materials.2024; 480: 135999. CrossRef - Association of gut microbiome and oral cavity cancer: A two sample mendelian randomization and case-control study
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Journal of Applied Physiology.2024; 137(5): 1374. CrossRef - The Ruminal Microbiome Alterations Associated with Diet-Induced Milk Fat Depression and Milk Fat Globule Size Reduction in Dairy Goats
Menglu Zhang, Zhentao Liu, Kuixian Wu, Chuankai Zhang, Tong Fu, Yu Sun, Tengyun Gao, Liqiang Han
Animals.2024; 14(17): 2614. CrossRef - Oral administration of lysozyme protects against injury of ileum via modulating gut microbiota dysbiosis after severe traumatic brain injury
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Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef - Survey of the fecal microbiota of indigenous small ruminants living in different areas of Guizhou
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Frontiers in Microbiology.2024;[Epub] CrossRef -
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Nilmara de Oliveira Alves, Guillaume Dalmasso, Darja Nikitina, Amaury Vaysse, Richard Ruez, Lea Ledoux, Thierry Pedron, Emma Bergsten, Olivier Boulard, Lora Autier, Sofian Allam, Laurence Motreff, Pierre Sauvanet, Diane Letourneur, Pragya Kashyap, Johan G
Gut Microbes.2024;[Epub] CrossRef - Firmicutes and Bacteroidetes contribute to mass gain variation in female obligate hibernators
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Journal of Mammalogy.2024; 105(1): 2. CrossRef - Changes in the Human Gut Microbiome Caused by the Short-Term Impact of Lactic Acid Bacteria Consumption in Healthy People
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Probiotics and Antimicrobial Proteins.2024; 16(4): 1240. CrossRef - Characterization of the Effects of a Novel Probiotic on Salmonella Colonization of a Piglet-Derived Intestinal Microbiota Using Improved Bioreactor
Amely Grandmont, Mohamed Rhouma, Marie-Pierre Létourneau-Montminy, William Thériault, Isabelle Mainville, Yves Arcand, Roland Leduc, Bruno Demers, Alexandre Thibodeau
Animals.2024; 14(5): 787. CrossRef - INDICATORS OF THE QUALITATIVE AND QUANTITATIVE COMPOSITION OF THE GUT COMMENSAL MICROBIOTA AS BIOMARKERS OF HOMEOSTASIS (Part 1)
M.M. Ananieva, G.A. Loban, M.O. Faustova, Y.V. Chumak, S.M. Losev
Актуальні проблеми сучасної медицини: Вісник Української медичної стоматологічної академії.2024; 24(1): 239. CrossRef -
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M.M. Ananieva, G.A. Loban, M.O. Faustova, Y.V. Chumak, S.M. Losev
Актуальні проблеми сучасної медицини: Вісник Української медичної стоматологічної академії.2024; 24(2): 277. CrossRef - Enteromorpha prolifera Polysaccharide Alleviates Acute Alcoholic Liver Injury in C57 BL/6 Mice through the Gut–Liver Axis and NF-κB Pathway
Tingting Yan, Jinghe Sun, Yuying Zhang, Chengrong Wen, Jingfeng Yang
Journal of Agricultural and Food Chemistry.2024; 72(42): 23258. CrossRef - Chlorella and vegetable oil inclusion in diets for growing rabbits: effects on growth, digestibility, plasma metabolites, and caecal fermentations and microbiota
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animal.2024; 18(12): 101365. CrossRef - Hawthorn pectin plays a protective role in myocardial ischaemia by regulating intestinal flora and short chain fatty acids
Jiayue Lou, Baojie Zhang, Yu Zheng, Meiqi Liu, Yang Qu
Current Research in Food Science.2024; 9: 100863. CrossRef - Blackcurrants shape gut microbiota profile and reduce risk of postmenopausal osteoporosis via the gut-bone axis: Evidence from a pilot randomized controlled trial
Briana M. Nosal, Staci N. Thornton, Manije Darooghegi Mofrad, Junichi R. Sakaki, Kyle J. Mahoney, Zachary Macdonald, Lauren Daddi, Thi Dong Binh Tran, George Weinstock, Yanjiao Zhou, Elaine Choung-Hee Lee, Ock K. Chun
The Journal of Nutritional Biochemistry.2024; 133: 109701. CrossRef - Characterization of the follicular fluid microbiota based on culturomics and sequencing analysis
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Journal of Medical Microbiology .2023;[Epub] CrossRef - Oral intake of Lactiplantibacillus pentosus LPG1 Produces a Beneficial Regulation of Gut Microbiota in Healthy Persons: A Randomised, Placebo-Controlled, Single-Blind Trial
Elio López-García, Antonio Benítez-Cabello, Antonio Pablo Arenas-de Larriva, Francisco Miguel Gutierrez-Mariscal, Pablo Pérez-Martínez, Elena María Yubero-Serrano, Antonio Garrido-Fernández, Francisco Noé Arroyo-López
Nutrients.2023; 15(8): 1931. CrossRef - Polysaccharides from small black soybean alleviating type 2 diabetes via modulation of gut microbiota and serum metabolism
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Food Hydrocolloids.2023; 141: 108670. CrossRef - Metatranscriptome analysis of blood in healthy individuals and irritable bowel syndrome patients
Lauma Jagare, Maija Rozenberga, Ivars Silamikelis, Laura Ansone, Ilze Elbere, Monta Briviba, Kaspars Megnis, Ilze Konrade, Ilze Birka, Zane Straume, Janis Klovins
Journal of Medical Microbiology .2023;[Epub] CrossRef - Gut bacteria of adult and larval Cotinis nitida Linnaeus (Coleoptera: Scarabaeidae) demonstrate community differences according to respective life stage and gut region
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Frontiers in Microbiology.2023;[Epub] CrossRef - Definition of a microbial signature as a predictor of endoscopic post-surgical recurrence in patients with Crohn’s disease
Lia Oliver, Blau Camps, David Julià-Bergkvist, Joan Amoedo, Sara Ramió-Pujol, Marta Malagón, Anna Bahí, Paola Torres, Eugeni Domènech, Jordi Guardiola, Mariona Serra-Pagès, Jesus Garcia-Gil, Xavier Aldeguer
Frontiers in Molecular Medicine.2023;[Epub] CrossRef - Integrated Analysis of the Effects of Cecal Microbiota and Serum Metabolome on Market Weights of Chinese Native Chickens
Shenghong Yang, Yongxian Yang, Xiaoxia Long, Hui Li, Fuping Zhang, Zhong Wang
Animals.2023; 13(19): 3034. CrossRef - Effects of different manganese sources on nutrient digestibility, fecal bacterial community, and mineral excretion of weaning dairy calves
Huimin Ji, Dejin Tan, Yuhua Chen, Zhiqiang Cheng, Jingwen Zhao, Miao Lin
Frontiers in Microbiology.2023;[Epub] CrossRef - Effects of an inulin fiber diet on the gut microbiome, colon, and inflammatory biomarkers in aged mice
Noah T. Hutchinson, Selena S. Wang, Laurie A. Rund, Maria Elisa Caetano-Silva, Jacob M. Allen, Rodney W. Johnson, Jeffrey A. Woods
Experimental Gerontology.2023; 176: 112164. CrossRef - Gut Site and Gut Morphology Predict Microbiome Structure and Function in Ecologically Diverse Lemurs
Lydia K. Greene, Erin A. McKenney, William Gasper, Claudia Wrampelmeier, Shivdeep Hayer, Erin E. Ehmke, Jonathan B. Clayton
Microbial Ecology.2023; 85(4): 1608. CrossRef - Metaproteomic Analysis of Gut Resistome in the Cecal Microbiota of Fattening Pigs Raised without Antibiotics
Pamornya Buthasane, Sittiruk Roytrakul, Narumon Phaonakrop, Paiboon Tunsagool, Wannapol Buthasane, Nutthee Am-in, Gunnaporn Suriyaphol, Montarop Yamabhai
Microbiology Spectrum.2023;[Epub] CrossRef - Captivity restructures the gut microbiota of François' langurs (Trachypithecus francoisi)
Fengxiang Mo, Yuhui Li, Zheng Liu, Jingjin Zheng, Zhonghao Huang
Frontiers in Microbiology.2023;[Epub] CrossRef - Effects of dietary Chinese herbal mixtures on productive performance, egg quality, immune status, caecal and offspring meconial microbiota of Wenchang breeder hens
Mengjie Liu, Jieyi Huang, Ming Ma, Gengxiong Huang, Yingwen Zhang, Yiqing Ding, Qian Qu, Weijie Lv, Shining Guo
Frontiers in Veterinary Science.2023;[Epub] CrossRef - Associations of the gut microbiome with psychoneurological symptom cluster in women with gynecologic cancers: a longitudinal study
Zahra Amirkhanzadeh Barandouzi, Tony Eng, Joseph Shelton, Namita Khanna, Isabelle Scott, Rebecca Meador, Deborah Watkins Bruner
Supportive Care in Cancer.2023;[Epub] CrossRef - Homemade blenderized tube feeding improves gut microbiome communities in children with enteral nutrition
Sayaka Katagiri, Yujin Ohsugi, Takahiko Shiba, Kanako Yoshimi, Kazuharu Nakagawa, Yuki Nagasawa, Aritoshi Uchida, Anhao Liu, Peiya Lin, Yuta Tsukahara, Takanori Iwata, Haruka Tohara
Frontiers in Microbiology.2023;[Epub] CrossRef - Drinking Warm Water Promotes Performance by Regulating Ruminal Microbial Composition and Serum Metabolites in Yak Calves
Tianxu Liu, Qianqian Wang, Chenxi Gao, Shenfei Long, Tengfei He, Zhenlong Wu, Zhaohui Chen
Microorganisms.2023; 11(8): 2092. CrossRef - Effect of Clindamycin on Intestinal Microbiome and Miltefosine Pharmacology in Hamsters Infected with Leishmania infantum
Ana Isabel Olías-Molero, Pedro Botías, Montserrat Cuquerella, Jesús García-Cantalejo, Emilia Barcia, Susana Torrado, Juan José Torrado, José María Alunda
Antibiotics.2023; 12(2): 362. CrossRef - Gut Microbiome Profiling of the Endangered Southern Greater Glider (Petauroides volans) after the 2019–2020 Australian Megafire
Jordyn Clough, Sibylle Schwab, Katarina Mikac
Animals.2023; 13(22): 3583. CrossRef - Orally Administrated Lactiplantibacillus plantarum BGAN8-Derived EPS-AN8 Ameliorates Cd Hazards in Rats
Emilija Brdarić, Dušanka Popović, Svetlana Soković Bajić, Dina Tucović, Jelena Mutić, Maja Čakić-Milošević, Slađana Đurđić, Maja Tolinački, Aleksandra Popov Aleksandrov, Nataša Golić, Ivana Mirkov, Milica Živković
International Journal of Molecular Sciences.2023; 24(3): 2845. CrossRef - Ligularia virgaurea improved nutrient digestion, ruminal fermentation, and bacterial composition in Tibetan sheep grazing on the Qinghai–Tibetan plateau in winter
Xiongxiong Cui, Zhaofeng Wang, Qingshan Fan, Shenghua Chang, Tianhai Yan, Fujiang Hou
Animal Feed Science and Technology.2023; 299: 115628. CrossRef - Characterization of the Gut Microbiota in Urban Thai Individuals Reveals Enterotype-Specific Signature
Jiramaetha Sinsuebchuea, Prasobsook Paenkaew, Montree Wutthiin, Thatchawanon Nantanaranon, Kiattiyot Laeman, Weerayuth Kittichotirat, Songsak Wattanachaisaereekul, Sudarat Dulsawat, Montira Nopharatana, Namol Vorapreeda, Sakarindr Bhumiratana, Supapon Che
Microorganisms.2023; 11(1): 136. CrossRef - Lignocellulose degradation by rumen bacterial communities: New insights from metagenome analyses
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Environmental Research.2023; 229: 115925. CrossRef - Associations between the Gut Microbiome and Migraines in Children Aged 7-18 Years: An Analysis of the American Gut Project Cohort
Jinbing Bai, Natalie Shen, Yanqun Liu
Pain Management Nursing.2023; 24(1): 35. CrossRef - Invited review: Rumen modifiers in today's dairy rations
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Frontiers in Microbiology.2022;[Epub] CrossRef - Analysis of Faecal Microbiota and Small ncRNAs in Autism: Detection of miRNAs and piRNAs with Possible Implications in Host–Gut Microbiota Cross-Talk
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Frontiers in Microbiology.2022;[Epub] CrossRef - The primate gut mycobiome-bacteriome interface is impacted by environmental and subsistence factors
Ashok K. Sharma, Sam Davison, Barbora Pafco, Jonathan B. Clayton, Jessica M. Rothman, Matthew R. McLennan, Marie Cibot, Terence Fuh, Roman Vodicka, Carolyn Jost Robinson, Klara Petrzelkova, Andres Gomez
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Frontiers in Marine Science.2022;[Epub] CrossRef - Bacterial communities in the gastrointestinal tract segments of helminth-resistant and helminth-susceptible sheep
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Frontiers in Pharmacology.2021;[Epub] CrossRef - The Impact of Enriched Resistant Starch Type‐2 Cookies on the Gut Microbiome in Hemodialysis Patients: A Randomized Controlled Trial
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Journal Article
- Phenotypic and genotypic correlates of daptomycin-resistant methicillin-susceptible Staphylococcus aureus clinical isolates
- Kyoung-Mi Kang , Nagendra N. Mishra , Kun Taek Park , Gi-Yong Lee , Yong Ho Park , Arnold S. Bayer , Soo-Jin Yang
- J. Microbiol. 2017;55(2):153-159. Published online January 26, 2017
- DOI: https://doi.org/10.1007/s12275-017-6509-1
- 362 View
- 0 Download
- 25 Crossref
-
Abstract
PDF
- Daptomycin (DAP) has potent activity in vitro and in vivo against both methicillin-susceptible Staphylococcus aureus (MSSA) and methicillin-resistant S. aureus (MRSA) strains. DAP-resistance (DAP-R) in S. aureus has been mainly observed in MRSA strains, and has been linked to single nucleotide polymorphisms (SNPs) within the mprF gene leading to altered cell membrane (CM) phospholipid (PL) profiles, enhanced positive surface charge, and changes in CM fluidity. The current study was designed to delineate whether these same genotypic and phenotypic perturbations are demonstrated in clinically-derived DAP-R MSSA strains. We used three isogenic DAP-susceptible (DAP-S)/DAP-R strainpairs and compared: (i) presence of mprF SNPs, (ii) temporal expression profiles of the two key determinants (mprF and dltABCD) of net positive surface charge, (iii) increased production of mprF-dependent lysinylated-phosphatidylglycerol (L-PG), (iv) positive surface charge assays, and (v) susceptibility to cationic host defense peptides (HDPs) of neutrophil and platelet origins. Similar to prior data in MRSA, DAP-R (vs DAP-S) MSSA strains exhibited hallmark hot-spot SNPs in mprF, enhanced and dysregulated expression of both mprF and dltA, L-PG overproduction, HDP resistance and enhanced positive surface charge profiles. However, in contrast to most DAP-R MRSA strains, there were no changes in CM fluidity seen. Thus, charge repulsion via mprF- and dlt-mediated enhancement of positive surface charge may be the main mechanism to explain DAP-R in MSSA strains.
-
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Evaluating the Rapid Emergence of Daptomycin Resistance in
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: a Multicenter Study
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A narrative review of single-nucleotide polymorphism detection methods and their application in studies of
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Erica Lasek-Nesselquist, Jackson Lu, Ryan Schneider, Zhuo Ma, Vincenzo Russo, Smruti Mishra, Manjunath P. Pai, Janice D. Pata, Kathleen A. McDonough, Meenakshi Malik
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Artur J. Sabat, Marco Tinelli, Hajo Grundmann, Viktoria Akkerboom, Monica Monaco, Maria Del Grosso, Giulia Errico, Annalisa Pantosti, Alexander W. Friedrich
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Research Support, Non-U.S. Gov't
- A small hairpin RNA targeting myeloid cell leukemia-1 enhances apoptosis in host macrophages infected with Mycobacterium tuberculosis
- Fei-yu Wang , Yu-qing Zhang , Xin-min Wang , Chan Wang , Xiao-fang Wang , Jiang-dong Wu , Fang Wu , Wan-jiang Zhang , Le Zhang
- J. Microbiol. 2016;54(4):330-337. Published online April 1, 2016
- DOI: https://doi.org/10.1007/s12275-016-5627-5
- 435 View
- 0 Download
- 5 Crossref
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Abstract
PDF
- Myeloid cell leukemia-1 (Mcl-1) plays an important role in various cell survival pathways. Some studies indicated that the expression of Mcl-1 was upregulated in host cells during infection with the virulent Mycobacterium tuberculosis strain, H37Rv. The present study was designed to investigate the effect of inhibiting Mcl-1 expression both in vivo and in vitro on apoptosis of host macrophages infected with M. tuberculosis using a small hairpin (sh)RNA. Mcl-1 expression was detected by the real time-polymerase chain reaction, western blotting, and immunohistochemistry. Flow cytometry and transmission electron microscopy were used to measure host macrophage apoptosis. We found elevated Mcl-1 levels in host macrophages infected with M. tuberculosis H37Rv. The expression of Mcl-1 was downregulated efficiently in H37Rv-infected host macrophages using shRNA. Knockdown of Mcl-1 enhanced the extent of apoptosis in H37Rv-infected host macrophages significantly. The increased apoptosis correlated with a decrease in M. tuberculosis colony forming units recovered from H37Rv-infected cells that were treated with Mcl-1-shRNA. Reducing Mcl-1 accumulation by shRNA also reduced accumulation of the anti-apoptotic gene, Bcl-2, and increased expression of the pro-apoptotic gene, Bax, in H37Rv-infected host macrophages. Our results showed that specific knockdown of Mcl-1 expression increased apoptosis of host macrophages significantly and decreased the intracellular survival of a virulent strain of M. tuberculosis. These data indicate that interference with Mcl-1 expression may provide a new avenue for tuberculosis therapy.
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Reviews
- REVIEW] Innate host defenses against Cryptococcus neoformans
- Camaron Hole , Floyd L. Wormley Jr.
- J. Microbiol. 2016;54(3):202-211. Published online February 27, 2016
- DOI: https://doi.org/10.1007/s12275-016-5625-7
- 390 View
- 0 Download
- 18 Crossref
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Abstract
PDF
-
Cryptococcus neoformans, the predominant etiological agent
of cryptococcosis, can cause life-threatening infections of the
central nervous system in immunocompromised and immunocompetent
individuals. Cryptococcal meningoencephalitis
is the most common disseminated fungal infection in AIDS
patients, and remains the third most common invasive fungal
infection among organ transplant recipients. The administration
of highly active antiretroviral therapy (HAART) has
result
ed in a decrease in the number of cases of AIDS-related cryptococcosis in developed countries, but in developing countries where HAART is not readily available, Cryptococcus is still a major concern. Therefore, there is an urgent need for the development of novel therapies and/or vaccines to combat cryptococcosis. Understanding the protective immune responses against Cryptococcus is critical for development of vaccines and immunotherapies to combat cryptococcosis. Consequently, this review focuses on our current knowledge of protective immune responses to C. neoformans, with an emphasis on innate immune responses. -
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-
Lack of an atypical PDR transporter generates an immunogenic
Cryptococcus neoformans
strain that drives a dysregulated and lethal immune response in murine lungs
- REVIEW] Interaction of Candida albicans with host cells: virulence factors, host defense, escape strategies, and the microbiota
- Sarah Höfs , Selene Mogavero , Bernhard Hube
- J. Microbiol. 2016;54(3):149-169. Published online February 27, 2016
- DOI: https://doi.org/10.1007/s12275-016-5514-0
- 906 View
- 0 Download
- 163 Crossref
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Abstract
PDF
- The interaction between Candida albicans and its host cells is characterized by a complex interplay between the expression of fungal virulence factors, which results in adherence, invasion and cell damage, and the host immune system, which responds by secreting proinflammatory cytokines, activating antimicrobial activities and killing the fungal pathogen. In this review we describe this interplay by taking a closer look at how C. albicans pathogenicity is induced and executed, how the host responds in order to prevent and clear an infection, and which mechanisms C. albicans has evolved to bypass these immune responses to avoid clearance. Furthermore, we review studies that show how the presence of other microorganisms affects this interplay.
-
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Journal Article
- Molecular diversity and distribution of indigenous arbuscular mycorrhizal communities colonizing roots of two different winter cover crops in response to their root proliferation
- Masao Higo , Katsunori Isobe , Yusuke Miyazawa , Yukiya Matsuda , Rhae A. Drijber , Yoichi Torigoe
- J. Microbiol. 2016;54(2):86-97. Published online February 2, 2016
- DOI: https://doi.org/10.1007/s12275-016-5379-2
- 404 View
- 0 Download
- 22 Crossref
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Abstract
PDF
-
A clear understanding of how crop root proliferation affects
the distribution of the spore abundance of arbuscular mycorrhizal
fungi (AMF) and the composition of AMF communities
in agricultural fields is imperative to identify the potential
roles of AMF in winter cover crop rotational systems. Toward
this goal, we conducted a field trial using wheat (Triticum
aestivum L.) or red clover (Trifolium pratense L.) grown during
the winter season. We conducted a molecular analysis to
compare the diversity and distribution of AMF communities
in roots and spore abundance in soil cropped with wheat and
red clover. The AMF spore abundance, AMF root colonization,
and abundance of root length were investigated at three
different distances from winter crops (0 cm, 7.5 cm, and 15
cm), and differences in these variables were found between
the two crops. The distribution of specific AMF communities
and variables responded to the two winter cover crops. The
majority of Glomerales phylotypes were common to the
roots of both winter cover crops, but Gigaspora phylotypes
in Gigasporales were found only in red clover roots. These
results
also demonstrated that the diversity of the AMF colonizing the roots did not significantly change with the three distances from the crop within each rotation but was strongly influenced by the host crop identity. The distribution of specific AMF phylotypes responded to the presence of wheat and red clover roots, indicating that the host crop identity was much more important than the proliferation of crop roots in determining the diversity of the AMF communities. -
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Reviews
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- Cuong Thach Nguyen , Sang-Sang Park , Dong-Kwon Rhee
- J. Microbiol. 2015;53(11):741-749. Published online October 28, 2015
- DOI: https://doi.org/10.1007/s12275-015-5432-6
- 373 View
- 0 Download
- 31 Crossref
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Abstract
- Streptococci cause a variety of diseases, such as dental caries, pharyngitis, meningitis, pneumonia, bacteremia, endocarditis, erysipelas, and necrotizing fasciitis. The natural niche of this genus of bacteria ranges from the mouth and nasopharynx to the skin, indicating that the bacteria will inevitably be subjected to environmental changes during invasion into the host, where it is exposed to the host immune system. Thus, the Streptococcus-host interaction determines whether bacteria are cleared by the host’s defenses or whether they survive after invasion to cause serious diseases. If this interaction was to be deciphered, it could aid in the development of novel preventive and therapeutic agents. Streptococcus species possess many virulent factors, such as peroxidases and heat-shock proteins (HSPs), which play key roles in protecting the bacteria from hostile host environments. This review will discuss insights into the mechanism(s) by which streptococci adapt to host environments. Additionally, we will address how streptococcal infections trigger host stress responses; however, the mechanism by which bacterial components modulate host stress responses remains largely unknown.
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- Thomas C.G. Bosch , Juris A. Grasis , Tim Lachnit
- J. Microbiol. 2015;53(3):193-200. Published online March 3, 2015
- DOI: https://doi.org/10.1007/s12275-015-4695-2
- 435 View
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- 13 Crossref
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Abstract
PDF
- While largely studied because of their harmful effects on human health, there is growing appreciation that viruses are also important members of the animal holobiont. This review highlights recent findings on viruses associated with Hydra and related Cnidaria. These early evolutionary diverging animals not only select their bacterial communities but also select for viral communities in a species-specific manner. The majority of the viruses associating with these animals are bacteriophages. We demonstrate that the animal host and its virome have evolved into a homeostatic, symbiotic relationship and propose that viruses are an important part of the Hydra holobiont by controlling the species-specific microbiome. We conclude that beneficial virus-bacterial-host interactions should be considered as an integral part of animal development and evolution.
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Citations
Citations to this article as recorded by- Hydra for 21st Century—A Fine Model in Freshwater Research
Goran Kovačević, Petra Korać, Davor Želježić, Mirela Sertić Perić, Petra Peharec Štefanić, Damir Sirovina, Maja Novosel, Sanja Gottstein
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A. E. Vishnyakov, N. P. Karagodina, G. Lim-Fong, P. A. Ivanov, T. F. Schwaha, A. V. Letarov, A. N. Ostrovsky
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Heidi Goodrich‐Blair
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Juris A. Grasis
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Peter Deines, Thomas C. G. Bosch
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Research Support, Non-U.S. Gov'ts
- Comparative Phylogenetic Relationships and Genetic Structure of the Caterpillar Fungus Ophiocordyceps sinensis and Its Host Insects Inferred from Multiple Gene Sequences
- Qing-Mei Quan , Qing-Xia Wang , Xue-Li Zhou , Shan Li , Xiao-Ling Yang , Yun-Guo Zhu , Zhou Cheng
- J. Microbiol. 2014;52(2):99-105. Published online February 1, 2014
- DOI: https://doi.org/10.1007/s12275-014-3391-y
- 422 View
- 0 Download
- 22 Crossref
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Abstract
PDF
- Ophiocordyceps sinensis (Ascomycota: Ophiocordycipitaceae) is a native fungal parasite of Hepialidae caterpillars and one of the most economically important medicinal caterpillar fungi in China. However, little is known about the phylogenetic and evolutionary relationships between O. sinensis and its host insects. In this study, nuclear ITS and β-tubulin sequences from O. sinensis and mitochondrial COI, COII, and Cytb sequences from its hosts were analyzed across 33 populations sampled from five regions in China. Phylogenetically, both O. sinensis and its hosts were divided into three geographically correlated clades, and their phylogenies were congruent. Analysis of molecular variance and calculated coefficients of genetic differentiation revealed significant genetic divergence among the clades within both O. sinensis (FST=0.878, NST=0.842) and its hosts (FST=0.861, NST=0.816). Estimated gene flow was very low for O. sinensis (Nm=0.04) and the host insects (Nm=0.04) among these three clades. Mantel tests demonstrated a significant correlation (P<0.01) between the genetic distances for O. sinensis and its hosts, as well as a significant association (P<0.05) between geographic and genetic distances in both. The similar phylogenetic relationships, geographic distributions, and genetic structure and differentiation between O. sinensis and its hosts imply that they have coevolved.
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Yi Li, Xiao-Di Hu, Rui-Heng Yang, Tom Hsiang, Ke Wang, De-Quan Liang, Fan Liang, De-Ming Cao, Fan Zhou, Ge Wen, Yi-Jian Yao
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PLoS ONE.2014; 9(3): e92293. CrossRef
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- Enhancement of Anti-candidal Activity of Endophytic Fungus Phomopsis sp. ED2, Isolated from Orthosiphon stamineus Benth, by Incorporation of Host Plant Extract in Culture Medium
- Tong Woei Yenn , Chong Chai Lee , Darah Ibrahim , Latiffah Zakaria
- J. Microbiol. 2012;50(4):581-585. Published online July 21, 2012
- DOI: https://doi.org/10.1007/s12275-012-2083-8
- 285 View
- 0 Download
- 15 Crossref
-
Abstract
PDF
- This study examined the effect of host extract in the culture medium on anti-candidal activity of Phomopsis sp. ED2, previously isolated from the medicinal herb Orthosiphon stamineus Benth. Interestingly, upon addition of aqueous host extract to the culture medium, the ethyl acetate extract prepared from fermentative broth exhibited moderate anticandidal activity in a disc diffusion assay. The minimal inhibitory concentration of this extract was 62.5 μg/ml and it only exhibited fungistatic activity against C. albicans. In the time-kill study, a 50% growth reduction of C. albicans was observed at 31.4 h for extract from the culture incorporating host extract. In the bioautography assay, only one single spot (Rf 0.59) developed from the extract exhibited anti-candidal activity. A spot with the a similar Rf was not detected for the crude extract from YES broth without host extract. This indicated that the terpenoid anti-candidal compound was only produced when the host extract was introduced into the medium. The study concluded that the incorporation of aqueous extract of the host plant into the culture medium significantly enhanced the anti-candidal activity of Phomopsis sp. ED2.
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- Host Species as a Strong Determinant of the Intestinal Microbiota of Fish Larvae
- Xuemei Li , Yuhe Yu , Weisong Feng , Qingyun Yan , Yingchun Gong
- J. Microbiol. 2012;50(1):29-37. Published online February 27, 2012
- DOI: https://doi.org/10.1007/s12275-012-1340-1
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Abstract
PDF
-
We investigated the influence of host species on intestinal
microbiota by comparing the gut bacterial community structure
of four cohabitating freshwater fish larvae, silver carp,
grass carp, bighead carp, and blunt snout bream, using denaturing
gradient gel electrophoresis (DGGE) of the amplified
16S and 18S rRNA genes. Similarity clustering indicated
that the intestinal microbiota derived from these four fish
species could be divided into four groups based on 16S
rRNA gene similarity, whereas the eukaryotic 18S rRNA
genes showed no distinct groups. The water sample from the
shared environment contained microbiota of an independent
group as indicated by both 16S and 18S rRNA genes segments.
The bacterial community structures were visualized using
rank-abundance plots fitted with linear regression models.
Results
showed that the intestinal bacterial evenness was significantly different between species (P<0.05) and between species and the water sample (P<0.01). Thirty-five relatively dominant bands in DGGE patterns were sequenced and grouped into five major taxa: Proteobacteria (26), Actinobacteria (5), Bacteroidetes (1), Firmicutes (2), and Cyanobacterial (1). Six eukaryotes were detected by sequencing 18S rRNA genes segments. The present study suggests that the intestines of the four fish larvae, although reared in the same environment, contained distinct bacterial populations, while intestinal eukaryotic microorganisms were almost identical. -
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Yoon-Jong Nam, Hyeokjun Yoon, Hyun Kim, Jong-Guk Kim
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Tongtong Li, Meng Long, François-Joël Gatesoupe, Qianqian Zhang, Aihua Li, Xiaoning Gong
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PLOS ONE.2015; 10(7): e0132860. CrossRef - Sorption and degradation of triclosan in sediments and its effect on microbes
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Ecotoxicology and Environmental Safety.2015; 116: 76. CrossRef - Intestinal bacterial community structure differs between healthy and inflamed intestines in Atlantic salmon (Salmo salar L.)
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Christos Giatsis, Detmer Sipkema, Hauke Smidt, Johan Verreth, Marc Verdegem, Pikul Jiravanichpaisal
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) and bighead carp (Aristichthys nobilis
) reared in the same pond?
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Xuemei Li, Qingyun Yan, Shouqi Xie, Wei Hu, Yuhe Yu, Zihua Hu, Kostas Bourtzis
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Eun Soo Noh, Young-Sam Kim, Dong-Hyun Kim, Kyoung-Ho Kim
The Korean Journal of Microbiology.2013; 49(3): 237. CrossRef
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- A Genome-Wide Identification of Genes Potentially Associated with Host Specificity of Brucella Species
- Kyung Mo Kim , Kyu-Won Kim , Samsun Sung , Heebal Kim
- J. Microbiol. 2011;49(5):768-775. Published online November 9, 2011
- DOI: https://doi.org/10.1007/s12275-011-1084-3
- 400 View
- 0 Download
- 5 Crossref
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Abstract
PDF
- Brucella species are facultative intracellular pathogenic α-Proteobacteria that can cause brucellosis in humans and domestic animals. The clinical and veterinary importance of the bacteria has led to well established studies on the molecular mechanisms of Brucella infection of host organisms. However, to date, no genome-wide study has scanned for genes related to the host specificity of Brucella spp. The majority of bacterial genes related to specific environmental adaptations such as host specificity are well-known to have evolved under positive selection pressure. We thus detected signals of positive selection for individual orthologous genes among Brucella genomes and identified genes related to host specificity. We first determined orthologous sets from seven completely sequenced Brucella genomes using the Reciprocal Best Hits (RBH). A maximum likelihood analysis based on the branch-site test was accomplished to examine the presence of positive selection signals, which was subsequently confirmed by phylogenetic analysis. Consequently, 12 out of 2,033 orthologous genes were positively selected by specific Brucella lineages, each of which belongs to a particular animal host. Extensive literature reviews revealed that half of these computationally identified genes are indeed involved in Brucella host specificity. We expect that this genome-wide approach based on positive selection may be reliably used to screen for genes related to environmental adaptation of a particular species and that it will provide a set of appropriate candidate genes.
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Citations
Citations to this article as recorded by- Clade-specific positive selection on a developmental gene: BRANCHLESS TRICHOME and the evolution of stellate trichomes in Physaria (Brassicaceae)
Abigail R. Mazie, David A. Baum
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Indian Journal of Microbiology.2015; 55(4): 384. CrossRef - Comparison of Brucella canis genomes isolated from different countries shows multiple variable regions
Miryan Margot Sánchez-Jiménez, Juan Pablo Isaza, Juan F. Alzate, Martha Olivera-Angel
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Guangjun Gao, Jing Li, Tiefeng Li, Zhengfang Zhang, Liping Wang, Xitong Yuan, Yufei Wang, Jie Xu, Yuehua Ke, Liuyu Huang, Dali Wang, Zeliang Chen, Xingran Xu
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Yufei Wang, Yuehua Ke, Qing Zhen, Xitong Yuan, Jie Xu, Yefeng Qiu, Zhoujia Wang, Tiefeng Li, Dali Wang, Liuyu Huang, Zeliang Chen
Journal of Bacteriology.2012; 194(23): 6697. CrossRef
- Clade-specific positive selection on a developmental gene: BRANCHLESS TRICHOME and the evolution of stellate trichomes in Physaria (Brassicaceae)
- Interaction of Acinetobacter baumannii 19606 and 1656-2 with Acanthamoeba castellanii
- Migma Dorji Tamang , Shukho Kim , Sung-Min Kim , Hyun-Hee Kong , Jungmin Kim
- J. Microbiol. 2011;49(5):841-846. Published online November 9, 2011
- DOI: https://doi.org/10.1007/s12275-011-1063-8
- 212 View
- 0 Download
- 8 Crossref
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Abstract
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- Acinetobacter baumannii is virtually avirulent for healthy people but maintains a high virulence among critically ill patients or immuno-compromised individuals. The ability of A. baumannii to adhere to cells and persist on surfaces as biofilms could be central to its pathogenicity. In the present study, we compared the virulence of the A. baumannii 1656-2 clinical strain, which is able to form a thick biofilm, with the virulence of the A. baumannii type strain (ATCC 19606T). Acanthamoeba castellanii, a single-celled organism, was used as the host model system to study the virulence of A. baumannii. Compared to A. baumannii ATCC 19606T, A. baumannii 1656-2 exhibited a higher ability to adhere and invade A. castellanii cells and had a higher killing rate of A. castellanii cells. Furthermore, co-incubation of the amoeba cells and the cell-free supernatant of A. baumannii resulted in the cell death of the amoebae. Heat inactivation or proteinase K treatment of the supernatant did not eliminate its cytotoxicity, suggesting heat stable non-protein factors are responsible for its cytotoxicity to A. castellanii cells. In conclusion, this study for the first time has revealed the capacity of the A. baumannii strain and/or its metabolic products to induce cytotoxicity in A. castellanii cells.
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Citations
Citations to this article as recorded by- The intracellular life of Acinetobacter baumannii
Alexandra Maure, Etienne Robino, Charles Van der Henst
Trends in Microbiology.2023; 31(12): 1238. CrossRef - Molecular screening and characterization of Legionella pneumophila associated free-living amoebae in domestic and hospital water systems
Muhammad Atif Nisar, Kirstin E Ross, Melissa H Brown, Richard Bentham, Jason Hinds, Harriet Whiley
Water Research.2022; 226: 119238. CrossRef -
Interaction of Staphylococcus aureus and Acinetobacter baumannii during
In Vitro
β-Lactam Exposure
Nicholas M. Smith, Alexa Ang, Fanny Tan, Katelyn Macias, Sarah James, Jasleen Sidhu, Justin R. Lenhard
Antimicrobial Agents and Chemotherapy.2021;[Epub] CrossRef - Environmental Free-Living Amoebae Can Predate on Diverse Antibiotic-Resistant Human Pathogens
Félix Bornier, Eline Zas, Damien Potheret, Maria-Halima Laaberki, Bénédicte Coupat-Goutaland, Xavier Charpentier, Christopher A. Elkins
Applied and Environmental Microbiology.2021;[Epub] CrossRef - A Tractable Drosophila Cell System Enables Rapid Identification of Acinetobacter baumannii Host Factors
Qing-Ming Qin, Jianwu Pei, Gabriel Gomez, Allison Rice-Ficht, Thomas A. Ficht, Paul de Figueiredo
Frontiers in Cellular and Infection Microbiology.2020;[Epub] CrossRef - Genomic analysis of a Raoultella ornithinolytica strain causing prosthetic joint infection in an immunocompetent patient
Mamadou Beye, Issam Hasni, Piseth Seng, Caroline Michelle, Bernard La Scola, Didier Raoult, Pierre-Edouard Fournier
Scientific Reports.2018;[Epub] CrossRef - Current and Past Strategies for Bacterial Culture in Clinical Microbiology
Jean-Christophe Lagier, Sophie Edouard, Isabelle Pagnier, Oleg Mediannikov, Michel Drancourt, Didier Raoult
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Junaid Iqbal, Ruqaiyyah Siddiqui, Naveed Ahmed Khan
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- Distinctive Endophytic Fungal Assemblage in Stems of Wild Rice (Oryza granulata) in China with Special Reference to Two Species of Muscodor (Xylariaceae)
- Zhi-lin Yuan , Zhen-zhu Su , Li-juan Mao , Yang-qing Peng , Guan-mei Yang , Fu-cheng Lin , Chu-long Zhang
- J. Microbiol. 2011;49(1):15-23. Published online March 3, 2011
- DOI: https://doi.org/10.1007/s12275-011-0213-3
- 320 View
- 0 Download
- 26 Crossref
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Abstract
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- Ecological niches in the rhizosphere and phyllosphere of grasses capable of sustaining endophytes have been extensively studied. In contrast, little information regarding the identity and functions of endophytic fungi in stems is available. In this study, we investigated the taxonomic affinities, diversity, and host specificities of culturable endophytes in stems of wild rice (Oryza granulata) in China. Seventy-four isolates were recovered. Low recovery rate (11.7%) indicated that there were relatively few sites for fungal infection. Identification using morphology, morphospecies sorting, and molecular techniques resulted in classification into 50 taxa, 36 of which were recovered only once. Nucleotide sequence similarity analysis indicated that 30% of the total taxa recovered were highly divergent from known species and thus may represent lineages new to science. Most of the taxa were classified as members of the classes Sordariomycetes or Dothideomycetes (mainly in Pleosporales). The presence of Arthrinium and Magnaporthaceae species, most often associated with poaceous plants, suggested a degree of host specificity. A polyphasic approach was employed to identify two Muscodor taxa based on (i) ITS and RPB2 phylogenies, (ii) volatile compounds produced, and (iii) an in vitro bioassay of antifungal activity. This to our knowledge is only the second report regarding the isolation of Muscodor spp. in China. Therefore, we hypothesize that wild plants represent a huge reservoir of unknown fungi. The prevalence, novelty, and species-specificity of unique isolates necessitate a reevaluation of their contribution to ecosystem function and fungal biodiversity.
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Citations
Citations to this article as recorded by- Growth-Promoting Effects of Dark Septate Endophytes Fungus Acrocalymma on Tomato (Solanum lycopersicum)
Xiaoxiao Feng, Ying Jin, Zhupeiqi Zhong, Yongli Zheng, Huiming Wu
Journal of Fungi.2025; 11(7): 510. CrossRef - Prospects of fungal endophytes for stress mitigation in rice (Oryza sativa L.)
Boby Vattekkattu Unnikrishnan, Mahesh Mohan
Oryza-An International Journal on Rice.2022; 59(3): 309. CrossRef - Pest categorisation of Colletotrichum aenigma, C. alienum, C. perseae, C. siamense and C. theobromicola
Claude Bragard, Paula Baptista, Elisavet Chatzivassiliou, Francesco Di Serio, Paolo Gonthier, Josep Anton Jaques Miret, Annemarie Fejer Justesen, Alan MacLeod, Christer Sven Magnusson, Panagiotis Milonas, Juan A Navas‐Cortes, Stephen Parnell, Roel Potting
EFSA Journal.2022;[Epub] CrossRef - Phytotoxic compounds from endophytic fungi
Martha Lydia Macías-Rubalcava, Monserrat Yesenia Garrido-Santos
Applied Microbiology and Biotechnology.2022; 106(3): 931. CrossRef - Cross-pathogenicity of Colletotrichum isolates on tropical fruit species in Brazil
André Freire Cruz, Geleta Dugassa Barka, Luiz Eduardo Bassay Blum
Archives of Phytopathology and Plant Protection.2021; 54(5-6): 295. CrossRef - Endophytic microbes from Nigerian ethnomedicinal plants: a potential source for bioactive secondary metabolites—a review
Chijioke E. Ezeobiora, Nwamaka H. Igbokwe, Dina H. Amin, Udoma E. Mendie
Bulletin of the National Research Centre.2021;[Epub] CrossRef - Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla
Witoon Purahong, Shakhawat Hossen, Ali Nawaz, Dolaya Sadubsarn, Benjawan Tanunchai, Sven Dommert, Matthias Noll, La-aw Ampornpan, Petcharat Werukamkul, Tesfaye Wubet
Frontiers in Plant Science.2021;[Epub] CrossRef - Elucidation of the life cycle of the endophytic genus Muscodor and its transfer to Induratia in Induratiaceae fam. nov., based on a polyphasic taxonomic approach
Milan C. Samarakoon, Benjarong Thongbai, Kevin D. Hyde, Mark Brönstrup, Ulrike Beutling, Christopher Lambert, Andrew N. Miller, Jian-Kui (Jack) Liu, Itthayakorn Promputtha, Marc Stadler
Fungal Diversity.2020; 101(1): 177. CrossRef - Responses of the species complex Fallopia × bohemica to single-metal contaminations to Cd, Cr or Zn: growth traits, metal accumulation and secondary metabolism
Louise Barberis, Wilfried Chevalier, Marie-Laure Toussaint, Philippe Binet, Florence Piola, Serge Michalet
Environmental Monitoring and Assessment.2020;[Epub] CrossRef - Plant host and drought shape the root associated fungal microbiota in rice
Beatriz Andreo-Jimenez, Philippe Vandenkoornhuyse, Amandine Lê Van, Arvid Heutinck, Marie Duhamel, Niteen Kadam, Krishna Jagadish, Carolien Ruyter-Spira, Harro Bouwmeester
PeerJ.2019; 7: e7463. CrossRef - Plant-mycorrhizal fungi interaction and response to inoculation with different growth-promoting fungi
Carlos Vergara, Karla Emanuelle Campos Araujo, Sônia Regina de Souza, Nivaldo Schultz, Orivaldo José Saggin Júnior, Marcus Vinícius Loss Sperandio, Jerri Édson Zilli
Pesquisa Agropecuária Brasileira.2019;[Epub] CrossRef - Identification and characterization of new Muscodor endophytes from gramineous plants in Xishuangbanna, China
Li‐Juan Mao, Jia‐Jie Chen, Chen‐Yang Xia, Xiao‐Xiao Feng, De‐Dong Kong, Zhen‐Yu Qi, Feng Liu, Dian Chen, Fu‐Cheng Lin, Chu‐Long Zhang
MicrobiologyOpen.2019;[Epub] CrossRef - Brief Review on Fungal Endophytes
Rohit Shankar Mane, Padmaa Milaap Paarakh, Ankala Basappa Vedamurthy
International Journal of Secondary Metabolite.2018; 5(4): 288. CrossRef - Contribution of dark septate fungi to the nutrient uptake and growth of rice plants
Carlos Vergara, Karla Emanuelle Campos Araujo, Luiziene Soares Alves, Sônia Regina de Souza, Leandro Azevedo Santos, Claudete Santa-Catarina, Krisle da Silva, Gilmara Maria Duarte Pereira, Gustavo Ribeiro Xavier, Jerri Édson Zilli
Brazilian Journal of Microbiology.2018; 49(1): 67. CrossRef - Endophytic fungal community of Dysphania ambrosioides from two heavy metal‐contaminated sites: evaluated by culture‐dependent and culture‐independent approaches
Shobhika Parmar, Qiaohong Li, Ying Wu, Xinya Li, Jinping Yan, Vijay K. Sharma, Yunlin Wei, Haiyan Li
Microbial Biotechnology.2018; 11(6): 1170. CrossRef - Secondary structure prediction of ITS rRNA region and molecular phylogeny: an integrated approach for the precise speciation of Muscodor species
Neha Kapoor, Lokesh Gambhir, Sanjai Saxena
Annals of Microbiology.2018; 68(11): 763. CrossRef - Endophytic fungi harbored in the root of Sophora tonkinensis Gapnep: Diversity and biocontrol potential against phytopathogens
Yu Qun Yao, Fang Lan, Yun Ming Qiao, Ji Guang Wei, Rong Shao Huang, Liang Bo Li
MicrobiologyOpen.2017;[Epub] CrossRef - Dark Septate Endophytic Fungi Help Tomato to Acquire Nutrients from Ground Plant Material
Carlos Vergara, Karla E. C. Araujo, Segundo Urquiaga, Nivaldo Schultz, Fabiano de Carvalho Balieiro, Peter S. Medeiros, Leandro A. Santos, Gustavo R. Xavier, Jerri E. Zilli
Frontiers in Microbiology.2017;[Epub] CrossRef - Antifungal, anti-oomycete and phytotoxic effects of volatile organic compounds from the endophytic fungusXylariasp. strain PB3f3 isolated fromHaematoxylon brasiletto
B.L. Sánchez-Ortiz, R.E. Sánchez-Fernández, G. Duarte, P. Lappe-Oliveras, M.L. Macías-Rubalcava
Journal of Applied Microbiology.2016; 120(5): 1313. CrossRef - Phylogenetic diversity of culturable endophytic fungi in Dongxiang wild rice (Oryza rufipogon Griff), detection of polyketide synthase gene and their antagonistic activity analysis
Ya Wang, Bo Liang Gao, Xi Xi Li, Zhi Bin Zhang, Ri Ming Yan, Hui Lin Yang, Du Zhu
Fungal Biology.2015; 119(11): 1032. CrossRef - Identification of Acremonium isolates from grapevines and evaluation of their antagonism towards Plasmopara viticola
Sandra Lo Piccolo, Antonio Alfonzo, Selene Giambra, Gaetano Conigliaro, Luis V. Lopez-Llorca, Santella Burruano
Annals of Microbiology.2015; 65(4): 2393. CrossRef - Plant Bioactive Metabolites and Drugs Produced by Endophytic Fungi of Spermatophyta
Rosario Nicoletti, Antonio Fiorentino
Agriculture.2015; 5(4): 918. CrossRef - Endophytic Diaporthe from Southeast China are genetically diverse based on multi-locus phylogeny analyses
Jiaying Wang, Xihui Xu, Lijuan Mao, Jiaping Lao, Fucheng Lin, Zhilin Yuan, Chulong Zhang
World Journal of Microbiology and Biotechnology.2014; 30(1): 237. CrossRef - The Colletotrichum boninense species complex
U. Damm, P.F. Cannon, J.H.C. Woudenberg, P.R. Johnston, B.S. Weir, Y.P. Tan, R.G. Shivas, P.W. Crous
Studies in Mycology.2012; 73: 1. CrossRef - Current perspectives on the volatile-producing fungal endophytes
Yuan Zhi-Lin, Chen Yi-Cun, Xu Bai-Ge, Zhang Chu-Long
Critical Reviews in Biotechnology.2012; 32(4): 363. CrossRef - Colletotrichum – current status and future directions
P.F. Cannon, U. Damm, P.R. Johnston, B.S. Weir
Studies in Mycology.2012; 73: 181. CrossRef
- Growth-Promoting Effects of Dark Septate Endophytes Fungus Acrocalymma on Tomato (Solanum lycopersicum)
- Hepatitis B Virus Core Interacts with the Host Cell Nucleolar Protein, Nucleophosmin 1
- Su Jin Lee , Hee Youn Shim , Antony Hsieh , Ji Young Min , Gu hung Jung
- J. Microbiol. 2009;47(6):746-752. Published online February 4, 2010
- DOI: https://doi.org/10.1007/s12275-009-2720-z
- 219 View
- 0 Download
- 21 Scopus
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Abstract
PDF
- Hepatitis B virus (HBV) genome replication requires the packaging of viral factors (pregenomic RNA and polymerase) as well as host factors, including heat shock proteins and protein kinase C. Previous reports have suggested that there are several unidentified host factors that affect this encapsidation step. In this study, we identified a new host factor, nucleophosmin (B23) that interacts with the HBV core protein 149 (Cp149). We analyzed this factor using NHS-activated sepharose resin and MALDI-TOF MS. Using the BIAcore analysis system, we were also able to deduce that the B23.1 residues 259-294 were required for the interaction between Cp149 and B23.1 in vitro.
- Propagation of Bombyx mori Nucleopolyhedrovirus in Nonpermissive Insect Cell Lines
- Soo-Dong Woo , Jong Yul Roh , Jae Young Choi , Byung Rae Jin
- J. Microbiol. 2007;45(2):133-138.
- DOI: https://doi.org/2522 [pii]
- 237 View
- 0 Download
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Abstract
PDF
- This study addresses the susceptibility of Spodoptera frugiperda (Sf9 and Sf21), Trichoplusia ni (Hi5), and S. exigua (Se301) cells to the Bombyx mori nucleopolyhedrovirus (BmNPV). Although these cells have classically been considered nonpermissive to BmNPV, the cytopathic effect, an increase in viral yield, and viral DNA synthesis by BmNPV were observed in Sf9, Sf21, and Hi5 cells, but not in Se301 cells. Very late gene expression by BmNPV in these cell lines was also detected via β-galactosidase expression under the control of the polyhedrin promoter. Sf9 cells were most susceptible to BmNPV in all respects, followed by Sf21 and Hi5 cells in decreasing order, while the Se301 cells evidenced no distinct viral replication. This particular difference in viral susceptibility in each of the cell lines can be utilized for our understanding of the mechanisms underlying the host specificity of NPVs.
- Optimal condition for efficient DNA transfer in filamentous cyanobacteria by electroporation
- Poo , Ha Ryoung
- J. Microbiol. 1997;35(3):181-187.
- 236 View
- 1 Download
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Abstract
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- Filamentous cyanobacteria are an ecologically important group of bacteria because they are able to provide both organic carbon fixed nitrogen that can support the nutritional requirements for other microorganisms. Because of their prokaryotic nature, they can also be used as potentially powerful model systems for the analysis of oxygenic photosynthesis and nitrogen fixation. Gene transfer is an indispensable procedure for genetic analysis of filamentous cyanobacteria. Electroporation was used to introduce foreign DNA into cyanobacterial cells. In experiments designed to optimize the electroporation technique, the effects of the field strength (amplitude of pulse) and time constant (duration of pulse), DNA concentration and host restriction/modification of DNA on the efficiency of electro-transformation were investigated. The results of this research revealed that a high voltage pulse of short duration was effective for the electro-transformation of Anabaene sp. M131. The maximal number of transformants was obtained at 6 kV/cm with a pulse duration of 5 msec. The efficiency of electro-transformation was also sensitive to concentration of DNA; even small amounts of DNA (0.01 ㎍/ml) were able to give a large number of transformants (1.0 × 10³ cfu/ml).
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