Growing evidence suggests that the gut microbiome is an important
contributor to metabolic diseases. Alterations in microbial
communities are associated with changes in lipid metabolism,
glucose homeostasis, intestinal barrier functions,
and chronic inflammation, all of which can lead to metabolic
disorders. Therefore, the gut microbiome may represent a
novel therapeutic target for obesity, type 2 diabetes, and nonalcoholic
fatty liver disease. This review discusses how gut microbes
and their products affect metabolic diseases and outlines
potential treatment approaches via manipulation of the
gut microbiome. Increasing our understanding of the interactions
between the gut microbiome and host metabolism
may help restore the healthy symbiotic relationship between
them.
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Su-Won Jeong , Jeong Eun Han , June-Young Lee , Ji-Ho Yoo , Do-Yeon Kim , In Chul Jeong , Jee-Won Choi , Yun-Seok Jeong , Jae-Yun Lee , So-Yeon Lee , Euon Jung Tak , Hojun Sung , Hyun Sik Kim , Pil Soo Kim , Dong-Wook Hyun , Jin-Woo Bae
J. Microbiol. 2022;60(6):576-584. Published online April 18, 2022
Three aerobic, Gram-negative, and rod-shaped bacterial strains,
designated strains G4M1T, SM13T, and L12M9T, were isolated
from the gut of Batillaria multiformis, Cellana toreuma, and
Patinopecten yessoensis collected from the Yellow Sea in South
Korea. All the strains grew optimally at 25°C, in the presence
of 2% (w/v) NaCl, and at pH 7. These three strains, which
belonged to the genus Polaribacter in the family Flavobacteriaceae,
shared < 98.8% in 16S rRNA gene sequence and < 86.68%
in whole-genome sequence with each other. Compared with
the type strains of Polaribacter, isolates showed the highest
sequence similarity to P. haliotis KCTC 52418T (< 98.68%),
followed by P. litorisediminis KCTC 52500T (< 98.13%). All
the strains contained MK-6 as their predominant menaquinone
and iso-C15:0 as their major fatty acid. Moreover, all the
strains had phosphatidylethanolamine as their polar lipid
component. In addition, strain G4M1T had two unidentified
lipids and three unidentified aminolipids, strain SM13T had
three unidentified lipids and three unidentified aminolipids,
and strain L12M9T had three unidentified lipids and one unidentified
aminolipid. The DNA G + C contents of strains
G4M1T, SM13T, and L12M9T were 31.0, 30.4, and 29.7 mol%,
respectively. Based on phenotypic, phylogenetic, chemotaxonomic,
and genotypic findings, strains G4M1T (= KCTC 82388T
= DSM 112372T), SM13T (= KCTC 82389T = DSM 112373T),
and L12M9T (= KCTC 62751T = DSM 112374T) were classified
into the genus Polaribacter as the type strains of novel
species, for which the names Polaribacter batillariae sp. nov.,
Polaribacter cellanae sp. nov., and Polaribacter pectinis sp.
nov., respectively, have been proposed.
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J. Microbiol. 2022;60(6):585-593. Published online April 18, 2022
Two Gram-stain-positive, catalase-negative, non-spore-forming,
cocci-shaped strains (dk850T and JY899) were isolated
from the feces of Equus kiang in the Qinghai-Tibet Plateau of
China. 16S rRNA gene sequence-based phylogenetic analyses
showed that strains dk850T and JY899 belong to the genus
Flaviflexus, closest to F. salsibiostraticola KCTC 33148T, F. ciconiae
KCTC 49253T and F. huanghaiensis H5T. The DNA
G + C content of strain dk850T was 62.9%. The digital DNADNA
hybridization values of strain dk850T with the closely related
species were below the 70% threshold for species demarcation.
The two strains grew best at 28°C on brain heart infusion
(BHI) agar with 5% sheep blood. All strains had C18:1ω9c
and C16:0 as the major cellular fatty acids. MK-9(H4) was the
major menaquinone in strain dk850T. The major polar lipids
included diphosphatidylglycerol and an unidentified phospholipid.
Strains dk850T and JY899 were identified as carrying
a class 1 integron containing the aminoglycoside resistance
gene aadA11, both strains were resistant to spectinomycin
and streptomycin. Based on several lines of evidence
from phenotypic and phylogenetic analyses, strains dk850T
and JY899 represent a novel species of the genus Flaviflexus,
for which the name Flaviflexus equikiangi sp. nov. is proposed.
The type strain is dk850T (= CGMCC 1.16593T = JCM 33598T).
Community-based microbial source tracking (MST) can be
used to determine fecal contamination from multiple sources
in the aquatic environment. However, there is little scientific
information on its application potential in water environmental
management. Here, we compared SourceTracker and
Fast Expectation-maximization Microbial Source Tracking
(FEAST) performances on environmental water bodies exposed
to low fecal pollution and evaluated treatment effects
of fecal pollution in the watershed utilizing community-based
MST. Our results showed that FEAST overall outperformed
SourceTracker in sensitivity and stability, and was able to discern
multi-source fecal contamination (mainly chicken feces)
in ambient water bodies exposed to low fecal inputs. Consistent
with our previous PCR/qPCR-based MST assays, FEAST
analysis indicates that fecal pollution has been significantly
mitigated through comprehensive environmental treatment
by the local government. This study suggests that FEAST can
be a powerful tool for accurately evaluating the contribution
of multi-source fecal contamination in environmental water,
facilitating environmental management.
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used to analyze the concentration of microcystins (MCs) because
it is comparatively less expensive and faster than other
assays. This study aimed to optimize the PPIA by determining
a suitable reaction terminator and an optimal methanol
concentration in the sample. The most suitable reaction time
was 90 min, with the corresponding methanol concentration
in the sample being 15% or less. When p-nitrophenyl phosphate
(pNPP) was used as a substrate, copper chloride solution
was suitably used as a reaction terminator, and when 4-
methylumbelliferyl phosphate (MUP) was used, a glycine buffer
not only increased the measurement sensitivity of the reaction
product but also terminated the enzymatic reaction.
When PPase 1 and MUP were used as an enzyme and a substrate,
respectively, the limit of quantitation for MC-leucine/
arginine (LR) was 0.02 μg/L, whereas it was 0.1 μg/L when
pNPP was used as a substrate. The proposed method facilitated
the measurement of MC-LR concentration without
additional pretreatments, such as concentration or purification;
therefore, this method was suitable and feasible for the
continuous monitoring of MCs in drinking water.
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health posed by pathogens with colistin resistance, colistin was
banned as a growth promoter in 2017 in China. In recent years,
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intestines or feces to colistin has decreased. However, the prevalence
and characteristics of the mcr-1 gene in retail meat have
not been well explored. Herein, 106 mcr-1-negative and 16 mcr-
1-positive E. coli isolates were randomly recovered from 120 retail
meat samples and screened using colistin. The 106 E. coli
isolates showed maximum resistance to sulfafurazole (73.58%)
and tetracycline (62.26%) but susceptibility to colistin (0.00%).
All 16 mcr-1-positive E. coli isolates showed resistance to colistin,
were extended spectrum beta-lactamase (ESBL)-positive
and exhibited complex multidrug resistance (MDR). For these
16 isolates, 17 plasmid replicons and 42 antibiotic resistance
genes were identified, and at least 7 antibiotic resistance genes
were found in each isolate. Acquired disinfectant resistance
genes were identified in 75.00% (12/16) of the isolates. Furthermore,
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and the most prevalent mcr-1-harboring IncI2 plasmid in
this study were closely related to other previously reported
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findings showed that retail meat products were a crucial reservoir
of mcr-1 during the colistin ban period and should
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Aspergillus fumigatus is the most prevalent saprophytic fungi
and can cause severe invasive aspergillosis in immunocompromised
individuals. For infection of A. fumigatus, the small
hydrophobic conidia have been shown to play a dominant
role. In this study, we found that deletion of erg5, a C-22 sterol
desaturase gene which function in the last two steps of ergosterol
biosynthesis, was sufficient to block ergosterol biosynthesis
and conidiation. The deletion phenotype was further
verified by a conditional expression strain of erg5 using the
inducible tet-on system. Strikingly, erg5 mutant displays increased
susceptibility to antifungal azoles itraconazole. RNA
sequencing analysis showed that erg5 deficiency resulted in
changes in transcription mainly related to lipid, carbohydrate,
and amino acid metabolism. Genes encoding ergosterol biosynthesis-
related enzymes were found to be up-regulated in
erg5 null mutants. However, genes involved in asexual development,
including upstream regulators, melanin biosynthesis
enzymes, heterotrimeric G proteins, and MAPK signaling,
were down-regulated to various degrees. Furthermore, metabolomic
study revealed that erg5 deficiency also resulted in
altered lipid and amino acid metabolism, which was consistent
with our transcriptomics analysis. Collectively, our study
established a link between ergosterol biosynthesis and asexual
development at the transcriptomics and metabolomics level
in A. fumigatus.
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Virulence factor gamma-glutamyltransferase (GGT) of H.
pylori consumes glutamine (Gln) in the stomach to decrease
the tricarboxylic acid metabolite alpha-ketoglutarate (α-kg)
and alter the downstream regulation of α-kg as well as cellular
biological characteristics. Our previous research indicated
that under H. pylori infection, mesenchymal stem cells
(MSCs) migrated to the stomach and participated in gastric
cancer (GC) development either by differentiating into epithelial
cells or promoting angiogenesis. However, how MSCs
themselves participate in H. pylori-indicated GC remains
unclear. Therefore, a GGT knockout H. pylori strain (Hp-
KS-1) was constructed, and downstream histone H3K9 and
H3K27 methylation and the PI3K/AKT signaling pathway
of α-kg were detected using Western blotting. The biological
characteristics of MSCs were also examined. An additive α-kg
supplement was also added to H. pylori-treated MSCs to investigate
alterations in these aspects. Compared to the control
and Hp-KS-1 groups, H. pylori-treated MSCs reduced Gln
and α-kg, increased H3K9me3 and H3K27me3, activated the
PI3K-AKT signaling pathway, and promoted the proliferation,
migration, self-renewal, and pluripotency of MSCs. The
addition of α-kg rescued the H. pylori-induced alterations.
Injection of MSCs to nude mice resulted in the largest tumors
in the H. pylori group and significantly reduced tumor sizes
in the Hp-KS-1 and α-kg groups. In summary, GGT of H.
pylori affected MSCs by interfering with the metabolite α-kg
to increase trimethylation of histone H3K9 and H3K27, activating
the PI3K/AKT signaling pathway, and promoting
proliferation, migration, self-renewal, and pluripotency in tumorigenesis,
elucidating the mechanisms of MSCs in GC
development.
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Neisseria meningitidis is a Gram-negative human-restricted
pathogen that asymptomatically resides in the human respiratory
tract. Meningococcal meningitis and sepsis both are
caused by N. meningitidis. The bacterium must adhere to host
epithelial cells in order to colonize effectively. The factors that
determine the initial attachment to the host and dispersal, are
not well understood. Metabolites released by the host may aid
in meningococcal colonization and dissemination. Polyamines
are aliphatic polycations that assist in cell survival and proliferation.
The virulence properties of N. meningitidis after
exposure to polyamines were investigated. Adhesion to nasopharyngeal
epithelial cells increased in the presence of spermine.
Also, the relative expression of adhesin, pilE increased
in the presence of spermine. Further, relative expression of
ctrA, ctrB and lipB was upregulated in the presence of spermidine,
indicating increased capsule formation. Upregulated
capsule synthesis of N. meningitidis in the presence of spermidine
allows it to survive in murine macrophages. The study
suggests the importance of the extracellular pool of polyamines
in promoting virulence in N. meningitidis.
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Inflammatory responses involve the action of inflammatory
mediators that are necessary for the clearance of invading bacterial
pathogens. However, excessive production of inflammatory
mediators can damage tissues, thereby impairing bacterial
clearance. Here, we examined the effects of Weigela florida
on the expression of inflammatory cytokines induced by
Pseudomonas aeruginosa or Staphylococcus aureus infection
in macrophages. The results showed that pre-treatment with
W. florida markedly downregulated the bacterial infectionmediated
expression of cytokines. Additionally, post-treatment
also triggered anti-inflammatory effects in cells infected
with S. aureus to a greater extent than in those infected with
P. aeruginosa. Bacterial infection activated inflammation-associated
AKT (Thr308 and Ser473)/NF-κB and MAPK (p38,
JNK, and ERK) signaling pathways, whereas W. florida treatment
typically inhibited the phosphorylation of AKT/NF‐κB
and p38/JNK, supporting the anti‐inflammatory effects of
W. florida. The present results suggest that W. florida decreases
the infection-mediated expression of inflammatory
mediators by inhibiting the AKT/NF-κB and MAPK signaling
pathways, implying that it may have potential use as an
inhibitory agent of excessive inflammatory responses.
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