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Ji Hye Kim 3 Articles
Direct interaction between the transcription factors CadC and OmpR involved in the acid stress response of Salmonella enterica
Yong Heon Lee , Ji Hye Kim
J. Microbiol. 2017;55(12):966-972.   Published online December 7, 2017
DOI: https://doi.org/10.1007/s12275-017-7410-7
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AbstractAbstract PDF
In Salmonella enterica serovar Typhimurium, the acid-sensing regulator CadC activates transcription of the cadBA operon which contributes to the acid tolerance response. The DNA-binding response regulator OmpR in two-component regulatory system with EnvZ binds to its own promoter for autoinduction. We previously reported that CadC exerts a negative influence on ompR transcription during acid adaptation. However, its underlying mechanisms remain to be elucidated. Here we show that the level of OmpR protein is gradually reduced by a gradual increase in the CadC level using an arabinose-inducible expression system, indicating there exists a negative correlation between the expression levels of two transcription factors. To explore the molecular basis for OmpR repression by CadC, we performed in vitro binding assays and determined that CadC directly interacts with OmpR. We further show that inactivation of cadC inhibits transcription of the fliC gene, which encodes the major flagellar subunit,
result
ing in impaired flagellar motility under acid-adaptation conditions. Together, our findings suggest that CadC may repress autoinduction of the OmpR response regulator through their direct interaction.

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  • A current insight into Salmonella’s inducible acid resistance
    Alkmini Gavriil, Ilias Giannenas, Panagiotis N. Skandamis
    Critical Reviews in Food Science and Nutrition.2025; 65(20): 3835.     CrossRef
  • Isolation and characterization of resistant variants of Salmonella Typhimurium after sequential exposure to plasma activated water (PAW)
    Elisa Pagán, Foteini Pavli, Sarah Happiette, Daniel Berdejo, Ruben Gatt, Rafael Pagán, Vasilis Valdramidis, Diego García-Gonzalo
    Innovative Food Science & Emerging Technologies.2024; 93: 103633.     CrossRef
  • Molecular mechanism of proteolytic cleavage-dependent activation of CadC-mediated response to acid in E. coli
    Min Chen, Ye Shang, Wenhao Cui, Xiaomeng Wang, Jiakun Zhu, Hongjie Dong, Hongwei Wang, Tiantian Su, Weiwei Wang, Kundi Zhang, Bingqing Li, Sujuan Xu, Wei Hu, Fengyu Zhang, Lichuan Gu
    Communications Biology.2024;[Epub]     CrossRef
  • Transmembrane Transcription Regulators Are Widespread in Bacteria and Archaea
    Lucas M. Demey, Vadim M. Gumerov, Jiawei Xing, Igor B. Zhulin, Victor J. DiRita, Beile Gao
    Microbiology Spectrum.2023;[Epub]     CrossRef
  • Host acid signal controls Salmonella flagella biogenesis through CadC-YdiV axis
    Weiwei Wang, Yingying Yue, Min Zhang, Nannan Song, Haihong Jia, Yuanji Dai, Fengyu Zhang, Cuiling Li, Bingqing Li
    Gut Microbes.2022;[Epub]     CrossRef
  • Recent advances in understanding the effect of acid-adaptation on the cross-protection to food-related stress of common foodborne pathogens
    Ricardo A. Wu, Hyun-Gyun Yuk, Donghong Liu, Tian Ding
    Critical Reviews in Food Science and Nutrition.2022; 62(26): 7336.     CrossRef
  • Metabolic adaptability shifts of cell membrane fatty acids of Komagataeibacter hansenii HDM1-3 improve acid stress resistance and survival in acidic environments
    Yuanjing Li, Pengfei Yan, Qingyun Lei, Bingyu Li, Yue Sun, Shuangfei Li, Hong Lei, Ning Xie
    Journal of Industrial Microbiology and Biotechnology.2019; 46(11): 1491.     CrossRef
Innate signaling mechanisms controlling Mycobacterium chelonae-mediated CCL2 and CCL5 expression in macrophages
Yi Sak Kim , Ji Hye Kim , Minjeong Woo , Tae-sung Kim Kim , Kyung Mok Sohn , Young-Ha Lee , Eun-Kyeong Jo , Jae-Min Yuk
J. Microbiol. 2015;53(12):864-874.   Published online December 2, 2015
DOI: https://doi.org/10.1007/s12275-015-5348-1
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AbstractAbstract PDF
Mycobacterium chelonae (Mch) is an atypical rapidly growing mycobacterium (RGM) that belongs to the M. chelonae complex, which can cause a variety of human infections. During this type of mycobacterial infection, macrophagederived chemokines play an important role in the mediation of intracellular communication and immune surveillance by which they orchestrate cellular immunity. However, the intracellular signaling pathways involved in the macrophage- induced chemokine production during Mch infections remain unknown. Thus, the present study aimed to determine the molecular mechanisms by which Mch activates the gene expressions of chemokine (C-C motif) ligand 2 (CCL2) and CCL5 in murine bone marrow-derived macrophages (BMDMs) and in vivo mouse model. Toll-like receptor 2 (TLR2)-deficient mice showed increased bacterial burden in spleen and lung and decreased protein expression of CCL2 and CCL5 in serum. Additionally, Mch infection triggered the mRNA and protein expression of CCL2 and CCL5 in BMDMs via TLR2 and myeloid differentiation primary response gene 88 (MyD88) signaling and that it rapidly activated nuclear factor (NF)-κB signaling, which is required for the Mch-induced expressions of CCL2 and CCL5 in BMDMs. Moreover, while the innate receptor Dectin-1 was only partly involved in the Mch-induced expression of the CCL2 and CCL5 chemokines in BMDMs, the generation of intracellular reactive oxygen species (ROS) was an important contributor to these processes. Taken together, the present data indicate that the TLR2, MyD88, and NF-κB pathways, Dectin-1 signaling, and intracellular ROS generation contribute to the Mch-mediated expression of chemokine genes in BMDMs.

Citations

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  • The Rise of Non-Tuberculosis Mycobacterial Lung Disease
    Champa N. Ratnatunga, Viviana P. Lutzky, Andreas Kupz, Denise L. Doolan, David W. Reid, Matthew Field, Scott C. Bell, Rachel M. Thomson, John J. Miles
    Frontiers in Immunology.2020;[Epub]     CrossRef
  • A Comparative Analysis of Edwardsiella tarda-Induced Transcriptome Profiles in RAW264.7 Cells Reveals New Insights into the Strategy of Bacterial Immune Evasion
    Huili Li, Boguang Sun, Xianhui Ning, Shuai Jiang, Li Sun
    International Journal of Molecular Sciences.2019; 20(22): 5724.     CrossRef
  • Abnormal Microglia and Enhanced Inflammation-Related Gene Transcription in Mice with Conditional Deletion ofCtcfinCamk2a-Cre-Expressing Neurons
    Bryan E. McGill, Ruteja A. Barve, Susan E. Maloney, Amy Strickland, Nicholas Rensing, Peter L. Wang, Michael Wong, Richard Head, David F. Wozniak, Jeffrey Milbrandt
    The Journal of Neuroscience.2018; 38(1): 200.     CrossRef
The Identification of a Novel Pleurotus ostreatus dsRNA Virus and Determination of the Distribution of Viruses in Mushroom Spores
Yeo Jin Kim , Ji Yeon Kim , Ji Hye Kim , Seon Mee Yoon , Young-Bok Yoo , Se Won Yie
J. Microbiol. 2008;46(1):95-99.
DOI: https://doi.org/10.1007/s12275-007-0171-y
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AbstractAbstract PDF
Double-stranded RNAs and virus particles were identified in Pleurotus ostreatus strain Shin-Nong in Korea. Isometric virus particles with a diameter of 33 nm were purified, which are similar to other Pleurotus viruses reported previously. This strain contains 5 dsRNAs, 8.0, 2.5, 2.4, 2.0, and 1.8 kb in size. The virus particles contain 2 dsRNAs, designated RNA-1 (2.5 kb), and RNA-2 (2.4 kb) which is a typical pattern of Partitiviridae. A non-encapsidated dsRNA of about 8.0 kb also was identified. Partial cDNA from RNA-1 was cloned, and sequence analysis revealed that this gene codes for RdRp. The comparison of the sequence from partial cDNA clone showed 35% amino acid homology with the C-terminal end of the RdRp gene of Helicobasidum mompa virus and Rosalinia necatrix virus. Specific primers designed from the partial sequences successfully amplified RT-PCR product from the infected mycelium and a single spore culture. We used these primers to determine the pattern of distribution of viruses in spores. Of the 96 different single spore cultures generated from Shin-Nong strain, a specific RT-PCR product was identified in 25 cultures, indicating that about 26% of basidiospores contain viruses.

Citations

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  • Prevalence and ribavirin-mediated elimination of Morchella importuna endornavirus 1 (MiEV1) in cultivated Morchella species in China
    Zhifeng Zhang, Yingjun Zhang, Zengqiang Shang, Xiaoli Wang, Yankui Li, Zhaoyu Wang, Longbo Zhao, Ziyan Peng
    Journal of Virological Methods.2026; 342: 115349.     CrossRef
  • Unveiling the hidden virome of Sclerotinia sclerotiorum: New tools and discoveries in mycovirus detection
    Simoné Bornman, David Read, Brenda D. Wingfield, P. Markus Wilken
    Virology.2026; 623: 111020.     CrossRef
  • Deep sequencing of single Pleurotus ostreatus strain revealed mixed infection of seven RNA viruses
    Jiayi Gao, Guoqiang He, Jin Kang Wei, Yong Pan, Congliang Deng, Xiju Shi, Caige Lu, Yongqiang Li
    BMC Genomics.2026;[Epub]     CrossRef
  • Transcriptome Analysis Reveals the Effect of Oyster Mushroom Spherical Virus Infection in Pleurotus ostreatus
    Yifan Wang, Junjie Yan, Guoyue Song, Zhizhong Song, Matthew Shi, Haijing Hu, Lunhe You, Lu Zhang, Jianrui Wang, Yu Liu, Xianhao Cheng, Xiaoyan Zhang
    International Journal of Molecular Sciences.2024; 25(17): 9749.     CrossRef
  • Oyster Mushroom Spherical Virus Crosses the Species Barrier and Is Pathogenic to a New Host Pleurotus pulmonarius
    Xiaoyan Zhang, Haijing Hu, Yanxiang Zhao, Yifan Wang, Wenjing Zhang, Lunhe You, Jianrui Wang, Yu Liu, Xianhao Cheng
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