Abstract
Tobacco-rice rotation is a common farming system in south China, and many tillage practices such as straw mulching, do-lomite dust, and quicklime application have been adopted to improve crop production. These agricultural management practices alter soil physical and chemical properties and affect microbial life environment and community composition. In this research, six tillage practices including no tobacco and rice straw mulching (CK), tobacco and rice straw mulching (TrSr), rice straw returning fire (TrSc), tobacco and rice straw mulching with dolomite dust (TSD), rice straw returning fire and quicklime (TSQ), and rice straw returning fire, quicklime and reduced fertilizer (TSQf) were conducted to detect changes in soil bacterial diversity and composition using Illumina se-quencing. The results showed that the total number of opera-tional taxonomic units (OTUs) from the six treatments was 2030, and the number of mutual OTUs among all samples was 550. The TrSc treatment had the highest diversity and richness, while TSQf had the lowest. Soil physio-chemical properties and microbial diversity can influence each other. Proteobacteria and Actinobacteria had the greatest propor-tion in all treatments. The abundance of Nitrospirae was the highest in the TrSc treatment. The TSQf treatment had the highest abundance of Firmicutes. The abundance of Nitrospira in the TrSc treatment was 2.29-fold over CK. Streptomyces affiliated with Firmicutes improved by 37.33% in TSQf com-pared to TSQ. TSQf treatment was considered to be the most important factor in determining the relative abundance at the genus level.
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- Investigation into the impact of chloride ion uptake inhibitors on tobacco plants
Hai Ding, Shengli Wang, Yan Zhang, Jianfei Dong, Ruonan Zhang, Bao Zhang, Shangyi Ma, Dong Liu, Ruibin Cui, Bin Chen, Qun Wang, Jian Sun, Shuo Xing, Zhaobao Wang, Minchong Shen, Weitao Wang, Huaibao Zhang
Frontiers in Soil Science.2025;[Epub] CrossRef - Comprehensive metabolomic and microbial analysis of tobacco rhizosphere soil responses to crop rotation and fertilization
Xinyu Liu, Ying Qiao, Xianzhi Wu, Xuanxuan Chen, Fan Yang, Hao Li, Chuanzong Li, Yong Yang, Chunlei Yang, Jun Yu, Pan Luo
Frontiers in Plant Science.2025;[Epub] CrossRef - Influence of the Residual Mature Qu’s Bacterial Community Structure on Box Wheat Qu–Making Process for Shaoxing Rice Wine (Huangjiu)
Songtao Ge, Linzheng Lyu, Guochang Sun, Quanhong Shou, Lingniao Kong, Taoying Wei, Qingzhong Mao, Ruyi Sha, Jianwei Mao, Zhanming Li, Milan Vukic
Journal of Food Processing and Preservation.2024;[Epub] CrossRef - Different rotation years change the structure and diversity of microorganisms in the nitrogen cycle, affecting crop yield
Tingting Ma, Kun Yang, Lei Yang, Yi Zhu, Biqiong Jiang, Zhipeng Xiao, Kaifeng Shuai, Ming Fang, Jia Gong, Zhiming Gu, Penghua Xiang, Yongjun Liu, Juan Li
Applied Soil Ecology.2024; 193: 105123. CrossRef - The impact of combined application of biochar and fertilizer on the biochemical properties of soil in soybean fields
Mingcong Zhang, Wei Xie, Xingjie Zhong, Yuqing Wang, Siyan Li, Yanhong Zhou, Chen Wang
PeerJ.2024; 12: e18172. CrossRef - Legacy effects of preceding crops improve flue-cured tobacco productivity in southwest China by optimizing soil structure, nutrients, and microbial interactions
Ke Ren, Kaiyuan Gu, Wenfeng Song, Jiaen Su, Zhimei Yang, Yi Chen, Binbin Hu, Chenggang He, Longchang C. Wang, Congming M. Zou
Plant and Soil.2024; 504(1-2): 247. CrossRef - Rotation with other crops slow down the fungal process in tobacco-growing soil
Ming Liu, Rujun Xue, Chengwei Yang, Ningbo Han, Yanxia Hu, Kaiyuan Gu, Jie Zhao, Shuyue Guan, Jiaen Su, Yonglei Jiang
Scientific Reports.2024;[Epub] CrossRef - Microbial community change and quality improve via endophytic colonization of tobacco by Saccharomyces cerevisiae
Lu Qiao, Jing Liu, Yu Cheng, Ye-Ming Zhou, Jian-Yu Gou, Xian-Ping Wang, Juan Shen, Hua-Wei Chen, Xiao Zou
Industrial Crops and Products.2024; 222: 119637. CrossRef - Rotations improve the diversity of rhizosphere soil bacterial communities, enzyme activities and tomato yield
Cui Feng, Zhengwei Yi, Wei Qian, Huiying Liu, Xiaosan Jiang, Raffaella Balestrini
PLOS ONE.2023; 18(1): e0270944. CrossRef - Soil bacterial community composition in rice-turtle coculture systems with different planting years
Ren Wang, Weiwei Ma, Dan Wu, Yin Zhang, Xuehu Ma, Guangdong Lv, Jiaolong Ding, Zhiqiang Fu, Can Chen, Huang Huang
Scientific Reports.2023;[Epub] CrossRef - The incorporation of straw into the subsoil increases C, N, and P enzyme activities and nutrient supply by enriching distinctive functional microorganisms
Deqiang Zhao, Jun Ling, Gong Wu, Zixi Liu, Shunli Zhou, Yuan Wen, Lukas Beule
Land Degradation & Development.2023; 34(5): 1297. CrossRef - Effects of Different Land Use Types and Soil Depth on Soil Nutrients and Soil Bacterial Communities in a Karst Area, Southwest China
Yuke Li, Jiyi Gong, Jie Liu, Wenpeng Hou, Itumeleng Moroenyane, Yinglong Liu, Jie Jin, Jie Liu, Han Xiong, Chen Cheng, Kamran Malik, Jianfeng Wang, Yin Yi
Soil Systems.2022; 6(1): 20. CrossRef - Land-use change affects the diversity and functionality of soil bacterial communities in semi-arid Chaco region, Argentina
Emilce Viruel, Cecilia A. Fontana, Edoardo Puglisi, Jose A. Nasca, Natalia R. Banegas, Pier S. Cocconcelli
Applied Soil Ecology.2022; 172: 104362. CrossRef - Eleven-year mulching and tillage practices alter the soil quality and bacterial community composition in Northeast China
Qingjun Cao, Gang Li, Fentuan Yang, Fanli Kong, Zhengguo Cui, Xiaoli Jiang, Yang Lu, Enping Zhang
Archives of Agronomy and Soil Science.2022; 68(9): 1274. CrossRef - Alternation of soil bacterial and fungal communities by tomato–rice rotation in Hainan Island in Southeast of China
Xiang Ma, Minglun Du, Peng Liu, Yanqiong Tang, Hong Li, Qianhua Yuan, Yunze Ruan, Lei Meng, Jiachao Zhang, Min Lin, Zhu Liu
Archives of Microbiology.2021; 203(3): 913. CrossRef -
Effect of organic and conventional farming on soil bacterial diversity of pecan tree (
Carya illinoensis
K. Kosh) orchard across two phenological stages
L.E. Palma‐Cano, H.A. Piñon‐Castillo, S.H. Tarango‐Rivero, A. Carbon, J. Salas‐Leiva, L.N. Muñoz‐Castellanos, C. Cravo‐Laureau, R. Duran, E. Orrantia‐Borunda
Letters in Applied Microbiology.2021; 72(5): 556. CrossRef - Tillage, Mulching and Nitrogen Fertilization Differentially Affects Soil Microbial Biomass, Microbial Populations and Bacterial Diversity in a Maize Cropping System
Methuselah Mang'erere Nyamwange, Ezekiel Mugendi Njeru, Monicah Mucheru-Muna
Frontiers in Sustainable Food Systems.2021;[Epub] CrossRef - Effect of straw application time on soil properties and microbial community in the Northeast China Plain
Liwei Wang, Cheng Wang, Fangyuan Feng, Zhengniu Wu, Hongkui Yan
Journal of Soils and Sediments.2021; 21(9): 3137. CrossRef - Exploring the Microbiome Analysis and Visualization Landscape
Jannes Peeters, Olivier Thas, Ziv Shkedy, Leyla Kodalci, Connie Musisi, Olajumoke Evangelina Owokotomo, Aleksandra Dyczko, Ibrahim Hamad, Jaco Vangronsveld, Markus Kleinewietfeld, Sofie Thijs, Jan Aerts
Frontiers in Bioinformatics.2021;[Epub] CrossRef - Soil Bacterial Diversity and Potential Functions Are Regulated by Long-Term Conservation Tillage and Straw Mulching
Chang Liu, Lingling Li, Junhong Xie, Jeffrey A. Coulter, Renzhi Zhang, Zhuzhu Luo, Liqun Cai, Linlin Wang, Subramaniam Gopalakrishnan
Microorganisms.2020; 8(6): 836. CrossRef - Impact of Maize–Mushroom Intercropping on the Soil Bacterial Community Composition in Northeast China
Xiaoqin Yang, Yang Wang, Luying Sun, Xiaoning Qi, Fengbin Song, Xiancan Zhu
Agronomy.2020; 10(10): 1526. CrossRef - Fungal Composition and Diversity of the Tobacco Leaf Phyllosphere During Curing of Leaves
Qian-Li Chen, Lin Cai, Han-Cheng Wang, Liu-Ti Cai, Paul Goodwin, Jun Ma, Feng Wang, Zhong Li
Frontiers in Microbiology.2020;[Epub] CrossRef - Dynamics of Bacterial Communities in a 30-Year Fertilized Paddy Field under Different Organic–Inorganic Fertilization Strategies
Yadong Yang, Peixin Wang, Zhaohai Zeng
Agronomy.2019; 9(1): 14. CrossRef - Genome analysis of Rubritalea profundi SAORIC-165T, the first deep-sea verrucomicrobial isolate, from the northwestern Pacific Ocean
Jaeho Song, Ilnam Kang, Yochan Joung, Susumu Yoshizawa, Ryo Kaneko, Kenshiro Oshima, Masahira Hattori, Koji Hamasaki, Kazuhiro Kogure, Soochan Kim, Kangseok Lee, Jang-Cheon Cho
Journal of Microbiology.2019; 57(5): 413. CrossRef - Effects of tillage managements and maize straw returning on soil microbiome using 16S rDNA sequencing
Xinyao Xia, Piaopiao Zhang, Linlin He, Xingxing Gao, Weijun Li, Yuanyuan Zhou, Zongxin Li, Hui Li, Long Yang
Journal of Integrative Plant Biology.2019; 61(6): 765. CrossRef - Metagenomic insights into effects of wheat straw compost fertiliser application on microbial community composition and function in tobacco rhizosphere soil
Yongfeng Yang, Songjie Zhang, Ning Li, Hongli Chen, Hongfang Jia, Xiaoning Song, Guoshun Liu, Chao Ni, Zhizhong Wang, Huifang Shao, Songtao Zhang
Scientific Reports.2019;[Epub] CrossRef - Soil microbial community and activity are affected by integrated agricultural practices in China
X. C. Zhu, L. Y. Sun, F. B. Song, S. Q. Liu, F. L. Liu, X. N. Li
European Journal of Soil Science.2018; 69(5): 924. CrossRef - Effects of straw return on bacterial communities in a wheat-maize rotation system in the North China Plain
Dali Yu, Zhiguo Wen, Xiumei Li, Xiaojun Song, Huijun Wu, Peilong Yang, Wen-Xiong Lin
PLOS ONE.2018; 13(6): e0198087. CrossRef - Changes in the Microbial Community Structure and Soil Chemical Properties of Vertisols Under Different Cropping Systems in Northern China
Xiuli Song, Bo Tao, Jing Guo, Jingjing Li, Guofeng Chen
Frontiers in Environmental Science.2018;[Epub] CrossRef