NOTE] Burkholderia denitrificans sp. nov., Isolated from the Soil of Dokdo Island, Korea

Chang-Muk Lee Lee; Hang-Yeon Weon; Sang-Hong Yoon; Soo-Jin Kim; Bon-Sung Koo; Soon-Wo Kwon

doi:10.1007/s12275-012-1554-2

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NOTE] Burkholderia denitrificans sp. nov., Isolated from the Soil of Dokdo Island, Korea: Chang-Muk Lee Lee ¹, Hang-Yeon Weon ², Sang-Hong Yoon ¹, Soo-Jin Kim ², Bon-Sung Koo ¹, Soon-Wo Kwon ²; Journal of Microbiology 2012;50(5):855-859.
DOI: https://doi.org/10.1007/s12275-012-1554-2
Published online: November 4, 2012

¹Functional Biomaterial Division, Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea, ²Korean Agricultural Culture Collection (KACC), Agricultural Microbiology Team, National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, Republic of Korea

Corresponding author: Soon-Wo Kwon , Tel: +82-31-299-1860,

Received: 4 November 2011 • Accepted: 18 May 2012

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Abstract

A novel, Gram-negative, bacterial strain KIS30-44T was identified from wet forest soil collected on the Korean island of Dokdo. Growth of the strain was observed at 15–30°C, pH 5−9, 0–3% NaCl, and 950 mM KNO3. KIS30-44T reduced nitrate to nitrogen gas. Analysis of the 16S rRNA gene sequence showed that KIS30-44T was phylogenetically related to Burkholderia sacchari, Burkholderia mimosarum, and Burkholderia oxyphila (98.1%, 98.0%, and 98.0% sequence similarity, respectively). The genomic G+C content was 63.5 mol%. KIS30-44T exhibited less than 52% DNA-DNA relatedness with the type strains of 9 closely related Burkholderia species. The major isoprenoid quinone was Q-8. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and two unknown aminolipids. The major fatty acids in KIS30-44T were C16:0, C18:1 ω7c and summed feature 3 (iso-C15:0 2-OH and C16:1 ω7c), and the strain contained half the amount of C17:0 cyclo found in the 9 closely related Burkholderia species. The results of these phenotypic, 16S rRNA gene sequence, DNA-DNA hybridization, and chemotaxonomic data indicate that KIS30-44T represents a novel species within the genus Burkholderia, for which the name Burkholderia denitrificans (Type strain KIS30-44T =KACC 12733T =DSM 24336T) is proposed.

Keywords: Burkholderia denitrificans;16S rRNA gene sequence;taxonomy

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NOTE] Burkholderia denitrificans sp. nov., Isolated from the Soil of Dokdo Island, Korea

J. Microbiol. 2012;50(5):855-859. Published online November 4, 2012

DOI: https://doi.org/10.1007/s12275-012-1554-2

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