Skip Navigation
Skip to contents

Journal of Microbiology : Journal of Microbiology

OPEN ACCESS
SEARCH
Search
Advanced Search
mobile menu button

Search

Page Path
HOME > Search
63 "water"
Filter
Filter
Article category
Keywords
More +
Publication year
More +
Authors
More +
Journal Articles
Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. within the OM60/NOR5 Clade, Isolated from Seawater, and Emended Description of the Genus Congregibacter
Hyeonsu Tak, Miri S Park, Hyerim Cho, Yeonjung Lim, Jang-Cheon Cho
J. Microbiol. 2024;62(9):739-748.   Published online July 18, 2024
DOI: https://doi.org/10.1007/s12275-024-00158-5
  • 638 View
  • 10 Download
  • 5 Web of Science
  • 5 Crossref
AbstractAbstract PDF
Two Gram-stain-negative, aerobic, motile by means of flagella, short rod-shaped bacterial strains, designated IMCC43200(T) and IMCC45268(T), were isolated from coastal seawater samples collected from the South Sea of Korea. Strains IMCC43200(T) and IMCC45268(T) shared 98.6% 16S rRNA gene sequence similarity and were closely related to Congregibacter litoralis KT71(T) (98.8% and 98.7%, respectively). Complete whole-genome sequences of IMCC43200(T) and IMCC45268(T) were 3.93 and 3.86 Mb in size with DNA G + C contents of 54.8% and 54.2%, respectively. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between the two strains were 74.5% and 23.4%, respectively, revealing that they are independent species. The two strains showed ANI values of ≤ 75.8% and dDDH values of ≤ 23.0% to the type and only species of the genus Congregibacter (C. litoralis), indicating that each strain represents a novel species. Both strains contained summed feature 3 (comprising C(16:1) ω6c and/or C(16:1) ω7c) and summed feature 8 (comprising C(18:1) ω6c and/or C(18:1) ω7c) as major fatty acid constituents. The predominant isoprenoid quinone detected in both strains was ubiquinone-8 (Q-8). The major polar lipids of the two strains were phosphatidylethanolamine, phosphatidylglycerol, phospholipids, and aminolipids. Based on the phylogenetic, genomic, and phenotypic characterization, strains IMCC43200(T) and IMCC45268(T) were considered to represent two novel species within the genus Congregibacter, for which the names Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. are proposed with IMCC43200(T) (= KCTC 8133(T) = NBRC 116295(T) = CCTCC AB 2023139(T)) and IMCC45268(T) (= KCTC 92921(T) = NBRC 116135(T)) as the type strains, respectively.

Citations

Citations to this article as recorded by  
  • Validation List no. 223. Valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Phycobium rhodophyticola gen. nov., sp. nov. and Aliiphycobium algicola gen. nov., sp. nov., isolated from the phycosphere of marine red algae
    Jeong Min Kim, Woonhee Baek, Byeong Jun Choi, Hülya Bayburt, Jae Kyeong Lee, Sung Chul Lee, Che Ok Jeon
    Journal of Microbiology.2025; 63(6): e2503014.     CrossRef
  • Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 42
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Rubrivirga aquatilis sp. nov. and Rubrivirga halophila sp. nov., isolated from Korean coastal surface seawater
    Jisoo Han, Yeonjung Lim, Mirae Kim, Jang-Cheon Cho
    Journal of Microbiology.2025; 63(8): e2504017.     CrossRef
  • Leuconostoc aquikimchii sp. nov., a Lactic Acid Bacterium Isolated from Cabbage Watery Kimchi
    Subin Kim, Se Hee Lee, Ki Hyun Kim, Misun Yun
    Journal of Microbiology.2024; 62(12): 1089.     CrossRef
Autotrophy to Heterotrophy: Shift in Bacterial Functions During the Melt Season in Antarctic Cryoconite Holes
Aritri Sanyal, Runa Antony, Gautami Samui, Meloth Thamban
J. Microbiol. 2024;62(8):591-609.   Published online May 30, 2024
DOI: https://doi.org/10.1007/s12275-024-00140-1
  • 536 View
  • 13 Download
  • 4 Web of Science
  • 2 Crossref
AbstractAbstract PDF
Microbes residing in cryoconite holes (debris, water, and nutrient-rich ecosystems) on the glacier surface actively participate in carbon and nutrient cycling. Not much is known about how these communities and their functions change during the summer melt-season when intense ablation and runoff alter the influx and outflux of nutrients and microbes. Here, we use high-throughput-amplicon sequencing, predictive metabolic tools and Phenotype MicroArray techniques to track changes in bacterial communities and functions in cryoconite holes in a coastal Antarctic site and the surrounding fjord, during the summer season. The bacterial diversity in cryoconite hole meltwater was predominantly composed of heterotrophs (Proteobacteria) throughout the season. The associated functional potentials were related to heterotrophic-assimilatory and -dissimilatory pathways. Autotrophic Cyanobacterial lineages dominated the debris community at the beginning and end of summer, while heterotrophic Bacteroidota- and Proteobacteria-related phyla increased during the peak melt period. Predictive functional analyses based on taxonomy show a shift from predominantly phototrophy-related functions to heterotrophic assimilatory pathways as the melt-season progressed. This shift from autotrophic to heterotrophic communities within cryoconite holes can affect carbon drawdown and nutrient liberation from the glacier surface during the summer. In addition, the flushing out and export of cryoconite hole communities to the fjord could influence the biogeochemical dynamics of the fjord ecosystem.

Citations

Citations to this article as recorded by  
  • Post-glacial microbial succession and carbon sequestration processes: insights from recent research
    Wenmei Li, Shichang Kang, Wasim Sajjad
    Environmental Sciences Europe.2025;[Epub]     CrossRef
  • Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
    Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
    Journal of Microbiology.2024; 62(11): 933.     CrossRef
Review
Biological and Chemical Approaches for Controlling Harmful Microcystis Blooms
Wonjae Kim, Yerim Park, Jaejoon Jung, Che Ok Jeon, Masanori Toyofuku, Jiyoung Lee, Woojun Park
J. Microbiol. 2024;62(3):249-260.   Published online April 8, 2024
DOI: https://doi.org/10.1007/s12275-024-00115-2
  • 826 View
  • 24 Download
  • 15 Web of Science
  • 14 Crossref
AbstractAbstract PDF
The proliferation of harmful cyanobacterial blooms dominated by Microcystis aeruginosa has become an increasingly serious problem in freshwater ecosystems due to climate change and eutrophication. Microcystis-blooms in freshwater generate compounds with unpleasant odors, reduce the levels of dissolved O2, and excrete microcystins into aquatic ecosystems, potentially harming various organisms, including humans. Various chemical and biological approaches have thus been developed to mitigate the impact of the blooms, though issues such as secondary pollution and high economic costs have not been adequately addressed. Red clays and H2O2 are conventional treatment methods that have been employed worldwide for the mitigation of the blooms, while novel approaches, such as the use of plant or microbial metabolites and antagonistic bacteria, have also recently been proposed. Many of these methods rely on the generation of reactive oxygen species, the inhibition of photosynthesis, and/or the disruption of cellular membranes as their mechanisms of action, which may also negatively impact other freshwater microbiota. Nevertheless, the underlying molecular mechanisms of anticyanobacterial chemicals and antagonistic bacteria remain unclear. This review thus discusses both conventional and innovative approaches for the management of M. aeruginosa in freshwater bodies.

Citations

Citations to this article as recorded by  
  • Rapid and selective disruption of photosystem I in toxic cyanobacteria protects aquatic ecosystem health
    Wonjae Kim, Yerim Park, Yongjun Son, Nayeon Yoo, Eui-Hwan Chung, Woojun Park
    Journal of Hazardous Materials.2026; 501: 140736.     CrossRef
  • Strong inhibitory effects of Desmodesmus sp. on Microcystis blooms: Potential as a biological control agent in aquaculture
    Bo Yang, Yuhua Li, Zihan Wang, Zhiguang Yue, Junqi Wen, Xueqin Zhao, Hu Zhang, Xianfeng Wang, Xiufen Wang, Man Zhang
    Aquaculture Reports.2025; 40: 102579.     CrossRef
  • Field-scale artificial floating islands reduces cyanotoxin from residential raw sewage treatment basin
    Zhaozhe Chen, Jiyoung Lee, Molly Mills, Abigail Volk, Ozeas S. Costa
    Ecological Engineering.2025; 212: 107543.     CrossRef
  • HABS-BLOCKS© Inhibited Microcystis and Planktothrix and Reduced Microcystin Concentrations in a Lake Water Mesocosm Study
    Cameron Gastaldo, Stephen Vesper
    Microorganisms.2025; 13(5): 1074.     CrossRef
  • Synergistic radical-mediated algal inactivation via FeMoS2/ZnO-persulfate visible-light photocatalysis
    Yingjian Ma, Yuxuan Tian, Ning Ding, Hong Liu
    Composites Part B: Engineering.2025; 305: 112740.     CrossRef
  • Isolation of a Novel Streptomyces sp. TH05 with Potent Cyanocidal Effects on Microcystis aeruginosa
    Xuhan Wang, Siqi Zhu, Shenchen Tao, Shaoyong Zhang, Ruijun Wang, Liqin Zhang
    Toxins.2025; 17(7): 354.     CrossRef
  • Public goods-mediated bacterial interplay in aquatic ecosystems
    Yerim Park, Wonjae Kim, Jihye Bae, Woojun Park
    Water Research.2025; 287: 124310.     CrossRef
  • Molecular mechanisms underlying the bloom-forming cyanobacterium Microcystis defence against predation by flagellates
    Yan Chen, Xiao Zhang, Xinyang Bai, Yonglan Xu, Hangzhou Xu, Li Li
    Journal of Water Process Engineering.2025; 77: 108611.     CrossRef
  • Utilizing allelopathy from the invasive plant Solidago canadensis to control Microcystis aeruginosa blooms: An integrated metabolomic and bioassay approach
    Miao Wu, Huiyuan Liu, Jiaxin Shen, Zhaohui Xie, Siyuan Yang, Jiahui Guo, Yijiang Liu, Huiting Lian, Dingli Wang
    Journal of Hazardous Materials.2025; 499: 140043.     CrossRef
  • Artificial Intelligence-Based Microfluidic Platform for Detecting Contaminants in Water: A Review
    Yihao Zhang, Jiaxuan Li, Yu Zhou, Xu Zhang, Xianhua Liu
    Sensors.2024; 24(13): 4350.     CrossRef
  • Alleviation of H2O2 toxicity by extracellular catalases in the phycosphere of Microcystis aeruginosa
    Yerim Park, Wonjae Kim, Yeji Cha, Minkyung Kim, Woojun Park
    Harmful Algae.2024; 137: 102680.     CrossRef
  • Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
    Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
    Journal of Microbiology.2024; 62(11): 933.     CrossRef
  • Laboratory-Simulated Inhibitory Effects of the Floating-Bed Plants on Microcystis aeruginosa and Their Microbial Communities’ Responses to Microcystins
    Shuwen Zhang, Yuanpu Sha, Yuanyuan Tang, Longjie Li, Feihu Wang, Jing Dong, Xuejun Li, Yunni Gao, Xiaofei Gao, Huatao Yuan, Jingxiao Zhang
    Microorganisms.2024; 12(10): 2035.     CrossRef
  • Host-Associated Microbiome
    Woo Jun Sul
    Journal of Microbiology.2024; 62(3): 135.     CrossRef
Journal Articles
Antiviral Activity Against SARS‑CoV‑2 Variants Using in Silico and in Vitro Approaches
Hee-Jung Lee , Hanul Choi , Aleksandra Nowakowska , Lin-Woo Kang , Minjee Kim , Young Bong Kim
J. Microbiol. 2023;61(7):703-711.   Published online June 26, 2023
DOI: https://doi.org/10.1007/s12275-023-00062-4
  • 498 View
  • 4 Download
  • 3 Web of Science
  • 4 Crossref
AbstractAbstract PDF
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) emergence in 2019 led to global health crises and the persistent risk of viral mutations. To combat SARS-CoV-2 variants, researchers have explored new approaches to identifying potential targets for coronaviruses. This study aimed to identify SARS-CoV-2 inhibitors using drug repurposing. In silico studies and network pharmacology were conducted to validate targets and coronavirus-associated diseases to select potential candidates, and in vitro assays were performed to evaluate the antiviral effects of the candidate drugs to elucidate the mechanisms of the viruses at the molecular level and determine the effective antiviral drugs for them. Plaque and cytopathic effect reduction were evaluated, and real-time quantitative reverse transcription was used to evaluate the antiviral activity of the candidate drugs against SARS-CoV-2 variants in vitro. Finally, a comparison was made between the molecular docking binding affinities of fenofibrate and remdesivir (positive control) to conventional and identified targets validated from protein–protein interaction (PPI). Seven candidate drugs were obtained based on the biological targets of the coronavirus, and potential targets were identified by constructing complex disease targets and PPI networks. Among the candidates, fenofibrate exhibited the strongest inhibition effect 1 h after Vero E6 cell infection with SARS-CoV-2 variants. This study identified potential targets for coronavirus disease (COVID-19) and SARS-CoV-2 and suggested fenofibrate as a potential therapy for COVID-19.

Citations

Citations to this article as recorded by  
  • Antiviral effects of heme oxygenase-1 against canine coronavirus and canine influenza virus in vitro
    Jae-Hyeong Kim, Dong-Hwi Kim, Kyu-Beom Lim, Joong-Bok Lee, Seung-Yong Park, Chang-Seon Song, Sang-Won Lee, Dong-Hun Lee, Do-Geun Kim, Hun-Young Yoon, In-Soo Choi
    Journal of Microbiology.2025; 63(5): e2501029.     CrossRef
  • In silico analysis of ion channels and lipid metabolism in SARS-CoV-2 infected patients
    John P. George, K.T.Shreya Parthasarathi, Kiran Bharat Gaikwad, Shweta Rana, Vibha Gupta, Punit Kaur, Akhilesh Pandey, Harpreet Singh, Jyoti Sharma
    In Silico Research in Biomedicine.2025; 1: 100141.     CrossRef
  • Differential Impact of Spike Protein Mutations on SARS-CoV-2 Infectivity and Immune Evasion: Insights from Delta and Kappa Variants
    Tae-Hun Kim, Sojung Bae, Jinjong Myoung
    Journal of Microbiology and Biotechnology.2024; 34(12): 2506.     CrossRef
  • Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
    Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
    Journal of Microbiology and Biotechnology.2023; 33(12): 1587.     CrossRef
Ship Hull‑Fouling Diatoms on Korean Research Vessels Revealed by Morphological and Molecular Methods, and Their Environmental Implications
Jaeyeong Park , Taehee Kim , Buhari Lawan Muhammad , Jang-Seu Ki
J. Microbiol. 2023;61(6):615-626.   Published online May 25, 2023
DOI: https://doi.org/10.1007/s12275-023-00055-3
  • 414 View
  • 0 Download
  • 3 Web of Science
  • 3 Crossref
AbstractAbstract PDF
Ship biofouling is one of the main vectors for the introduction and global spread of non-indigenous organisms. Diatoms were the early colonizers of ship hulls; however, their community composition on ships is poorly understood. Herein, we investigated the diatom community on the hull samples collected from two Korean research vessels Isabu (IRV) and Onnuri (ORV) on September 2 and November 10, 2021, respectively. IRV showed low cell density (345 cells/cm2) compared to ORV (778 cells/cm2). We morphologically identified more than 15 species of diatoms from the two research vessels (RVs). The microalgae in both RVs were identified as Amphora, Cymbella, Caloneis, Halamphora, Navicula, Nitzschia, and Plagiogramma. Of them, the genus Halamphora was found to be predominant. However, both RVs had a varied dominant species with a significant difference in body size; Halamphora oceanica dominated at IRV, and Halamphora sp. at ORV, respectively. Molecular cloning showed similar results to morphological analysis, in which Halamphora species dominated in both RVs. The hull-attached species were distinct from species found in the water column. These results revealed diatoms communities that are associated with ship hull-fouling at an early stage of biofilm formation. Moreover, ships arriving from different regions could show some variation in species composition on their hull surfaces, with the potential for nonindigenous species introduction.

Citations

Citations to this article as recorded by  
  • Invasion and ecological impact of the biofouling tube worm Hydroides elegans (Polychaeta: Serpulidae) in Korean coastal waters
    Sang Lyeol Kim, Ok Hwan Yu
    Frontiers in Marine Science.2025;[Epub]     CrossRef
  • Assessment of ship hull-attached marine diatoms: species composition and reattachment
    Jaeyeong Park, Buhari Lawan Muhammad, Taehee Kim, Quynh Thi Nhu Bui, Han-Sol Kim, Kyoungsoon Shin, Bonggil Hyun, Jung-Hoon Kang, Jang-Seu Ki
    Marine Pollution Bulletin.2025; 216: 117962.     CrossRef
  • High haplotype diversity and strong phylogeographic structure in the invasive jellyfish Blackfordia virginica population highlight its complex demographic history in Korea
    Buhari Lawan Muhammad, Jinho Chae, Jang-Seu Ki
    Marine Biodiversity.2024;[Epub]     CrossRef
Comparison of Ganoderma boninense Isolate’s Aggressiveness Using Infected Oil Palm Seedlings
Mei Lieng Lo , Tu Anh Vu Thanh , Frazer Midot , Sharon Yu Ling Lau , Wei Chee Wong , Hun Jiat Tung , Mui Sie Jee , Mei-Yee Chin , Lulie Melling
J. Microbiol. 2023;61(4):449-459.   Published online April 25, 2023
DOI: https://doi.org/10.1007/s12275-023-00040-w
  • 523 View
  • 1 Download
  • 7 Web of Science
  • 8 Crossref
AbstractAbstract PDF
Basal stem rot incidence caused by a white-rot fungus, Ganoderma boninense, is the major disease of oil palm in Southeast Asia. The rate of disease transmission and host damage are affected by variations in pathogen aggressiveness. Several other studies have used the disease severity index (DSI) to determine G. boninense aggressiveness levels while verifying disease using a culture-based method, which might not provide accurate results or be feasible in all cases. To differentiate G. boninense aggressiveness, we employed the DSI and vegetative growth measurement of infected oil palm seedlings. Disease confirmation was performed through scanning electron microscopy and molecular identification of fungal DNA from both infected tissue and fungi isolated from Ganoderma selective medium. Two-month-old oil palm seedlings were artificially inoculated with G. boninense isolates (2, 4A, 5A, 5B, and 7A) sampled from Miri (Lambir) and Mukah (Sungai Meris and Sungai Liuk), Sarawak. The isolates were categorized into three groups: highly aggressive (4A and 5B), moderately aggressive (5A and 7A), and less aggressive (2). Isolate 5B was identified as the most aggressive, and it was the only one to result in seedling mortality. Out of the five vegetative growth parameters measured, only the bole size between treatments was not affected. The integration of both conventional and molecular approaches in disease confirmation allows for precise detection.

Citations

Citations to this article as recorded by  
  • First Report of Ganoderma ryvardenii causing Basal Stem Rot (BSR) disease on oil palm (Elaeis guineensis Jacq.) in Ghana
    Emmanuellah Lekete-Lawson, Grace C. van der Puije, Enoch A. Osekre, Frank K. Ackah
    F1000Research.2025; 14: 413.     CrossRef
  • Gene expression of transcripts encoding putative secreted proteins from an oil palm fungal pathogen Ganoderma boninense
    Mui Sie Jee, Chai-Ling Ho, Mohd Termizi Yusof, Sharon Yu Ling Lau, Frazer Midot, Mei Lieng Lo, Mei-Yee Chin, Lulie Melling
    Physiological and Molecular Plant Pathology.2025; 138: 102715.     CrossRef
  • First Report of Ganoderma ryvardenii causing Basal Stem Rot (BSR) disease on oil palm (Elaeis guineensis Jacq.) in Ghana
    Emmanuellah Lekete-Lawson, Grace C. van der Puije, Enoch A. Osekre, Frank K. Ackah
    F1000Research.2025; 14: 413.     CrossRef
  • A review update on Ganoderma species: etiology and management approaches
    Pratibha Thakur, Sonali Khanal, Ashwani Tapwal, Neha Sharma, Poonam Chauhan, Tamanna Singh Thakur, Dinesh Kumar, Rachna Verma
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Bioactivity and toxicity of polysaccharides derived from the phytopathogenic mushroom Ganoderma orbiforme cultured in a bioreactor
    Danial ‘Aizat Norhisham, Jo Cheah, Nur Ardiyana Rejab, Zul Ilham, Nur Asyiqin Zahia-Azizan, Wan Abd Al Qadr Imad Wan-Mohtar
    Scientific Reports.2025;[Epub]     CrossRef
  • An In-Depth Study of Phytopathogenic Ganoderma: Pathogenicity, Advanced Detection Techniques, Control Strategies, and Sustainable Management
    Samantha C. Karunarathna, Nimesha M. Patabendige, Wenhua Lu, Suhail Asad, Kalani K. Hapuarachchi
    Journal of Fungi.2024; 10(6): 414.     CrossRef
  • Advancements in the nanodelivery of azole-based fungicides to control oil palm pathogenic fungi
    Azren Aida Asmawi, Fatmawati Adam, Nurul Aini Mohd Azman, Mohd Basyaruddin Abdul Rahman
    Heliyon.2024; 10(18): e37132.     CrossRef
  • Characterizations of Ganoderma species causing basal stem rot disease in coconut tree
    Umesh Sajjan, Manjunath Hubballi, Abhay K. Pandey, V. Devappa, H. P. Maheswarappa
    3 Biotech.2024;[Epub]     CrossRef
Gut Lactobacillus and Probiotics Lactobacillus lactis/rhamnosis Ameliorate Liver Fibrosis in Prevention and Treatment
Sung Min Won , Na Young Lee , Ki&# , Haripriya Gupta , Satya Priya Sharma , Kyung Hwan Kim , Byoung Kook Kim , Hyun Chae Joung , Jin Ju Jeong , Raja Ganesan , Sang Hak Han , Sang Jun Yoon , Dong Joon Kim , Ki Tae Suk
J. Microbiol. 2023;61(2):245-257.   Published online February 6, 2023
DOI: https://doi.org/10.1007/s12275-023-00014-y
  • 455 View
  • 5 Download
  • 13 Web of Science
  • 14 Crossref
AbstractAbstract PDF
The progression and exacerbation of liver fibrosis are closely related to the gut microbiome. It is hypothesized that some probiotics may slow the progression of liver fibrosis. In human stool analysis [healthy group (n = 44) and cirrhosis group (n = 18)], difference in Lactobacillus genus between healthy group and cirrhosis group was observed. Based on human data, preventive and therapeutic effect of probiotics Lactobacillus lactis and L. rhamnosus was evaluated by using four mice fibrosis models. L. lactis and L. rhamnosus were supplied to 3,5-diethoxycarbonyl-1,4-dihydrocollidine or carbon tetrachloride-induced liver fibrosis C57BL/6 mouse model. Serum biochemical measurements, tissue staining, and mRNA expression in the liver were evaluated. The microbiome was analyzed in mouse cecal contents. In the mouse model, the effects of Lactobacillus in preventing and treating liver fibrosis were different for each microbe species. In case of L. lactis, all models showed preventive and therapeutic effects against liver fibrosis. In microbiome analysis in mouse models administered Lactobacillus, migration and changes in the ratio and composition of the gut microbial community were confirmed. L. lactis and L. rhamnosus showed preventive and therapeutic effects on the progression of liver fibrosis, suggesting that Lactobacillus intake may be a useful strategy for prevention and treatment.

Citations

Citations to this article as recorded by  
  • Targeted transportation of bisphenol A using engineered postbiotics Lactococcus lactis with surface-anchored human ERRγ ligand-binding domain to mitigate hepatic injury in murine models
    Jianquan Guo, Yushuang Li, Xiaoru Zhou, Yali Niu, Ben Li, Bangyuan Zhou, Weijng Kong, Xiaoqin Hu, Liyang Yang, Jisheng Nie
    Food Bioscience.2026; 75: 108198.     CrossRef
  • Probiotics modulation of the endotoxemic effect on the gut and liver of the lipopolysaccharide challenged mice
    Gyan Babu, Banalata Mohanty
    Drug and Chemical Toxicology.2025; 48(3): 627.     CrossRef
  • Enhancing the application of probiotics in probiotic food products from the perspective of improving stress resistance by regulating cell physiological function: A review
    Dingkang Wang, Ruijie Xu, Sha Liu, Xiaomin Sun, Tianxiao Zhang, Lin Shi, Youfa Wang
    Food Research International.2025; 199: 115369.     CrossRef
  • Probiotics and Cancer: Mechanistic Insights and Organ-Specific Impact
    Md Faruque Ahmad, Fakhruddin Ali Ahmad, Abdulrahman A. Alsayegh, Md. Zeyaullah, Ahmad O. Babalghith, Hani Faidah, Faiyaz Ahmed, Anjum Khanam, Boshra Mozaffar, Nahla Kambal, Farkad Bantun
    Biomolecules.2025; 15(6): 879.     CrossRef
  • Integration bile acid metabolomics and gut microbiome to study the anti-liver fibrosis effects of total alkaloids of Corydalis saxicola Bunting
    Qianyi Wang, MeiLing Zhang, Mingwei Meng, Zhuo Luo, Ziping Pan, Lijun Deng, Jinghua Qin, Bingjian Guo, Dan Zhu, Yanmin Zhang, Hongwei Guo, Yonghong Liang, Zhiheng Su
    Chinese Medicine.2025;[Epub]     CrossRef
  • Mucosal microbiota signatures reveal diagnostic insights in chronic liver disease
    Sadık Dinçer, Yakup Ülger, Anıl Delik
    BMC Gastroenterology.2025;[Epub]     CrossRef
  • Saccharomyces cervisiae ameliorative impact combined with sulfaclozine on broiler chicken oxidative status
    Nahla M. Ali, Mohamed K. Hussein, Nady Khairy Elbarbary, Zeinab-El Amgad, Enas A. Noseer
    BMC Veterinary Research.2025;[Epub]     CrossRef
  • Lactobacillus rhamnosus GG-derived extracellular vesicles improve cholestatic liver injury by regulating the gut microbiota and bile acid metabolism
    Zhongyu Wang, Yubo Wang, Yawei Qiu, Andrea Del Pilar Abreo Medina, Yongwang Liu, Mengdie Shi, Jinyan Li, Yanyan Wang, Xianjiao Liu, Xingxiang Chen, Kehe Huang, Yunhuan Liu
    Chemical Engineering Journal.2025; 525: 170547.     CrossRef
  • Lactobacillus gasseri BNR17 and Limosilactobacillus fermentum ABF21069 Ameliorate High Sucrose-Induced Obesity and Fatty Liver via Exopolysaccharide Production and β-oxidation
    Yu Mi Jo, Yoon Ji Son, Seul-Ah Kim, Gyu Min Lee, Chang Won Ahn, Han-Oh Park, Ji-Hyun Yun
    Journal of Microbiology.2024; 62(10): 907.     CrossRef
  • Research reviews and prospects of gut microbiota in liver cirrhosis: a bibliometric analysis (2001–2023)
    Xiaofei Zhu, Ziyuan Zhou, Xiaxia Pan
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Gut microbes combined with metabolomics reveal the protective effects of Qijia Rougan decoction against CCl4-induced hepatic fibrosis
    Xue Li, Xinyi Xu, Sian Tao, Yue Su, Li Wen, Dong Wang, Jibin Liu, Quansheng Feng
    Frontiers in Pharmacology.2024;[Epub]     CrossRef
  • Assessment of probiotic properties of lactic acid bacteria isolated from an artisanal Colombian cheese
    Samantha Roldán-Pérez, Sara Lucía Gómez Rodríguez, José Uriel Sepúlveda-Valencia, Orlando Simón Ruiz Villadiego, María Elena Márquez Fernández, Olga I. Montoya Campuzano, Mónica María Durango-Zuleta
    Heliyon.2023; 9(11): e21558.     CrossRef
  • Agrocybe aegerita Polysaccharide Combined with Bifidobacterium lactis Bb-12 Attenuates Aging-Related Oxidative Stress and Restores Gut Microbiota
    Xiaoyan Liu, Yanyu Feng, Hongmin Zhen, Lina Zhao, Hongqiang Wu, Bin Liu, Guangsen Fan, Aijun Tong
    Foods.2023; 12(24): 4381.     CrossRef
  • Probiotics and liver fibrosis: An evidence-based review of the latest research
    Lin Cheng, Jianyou Shi, Haoyuan Peng, Rongsheng Tong, Yonghe Hu, Dongke Yu
    Journal of Functional Foods.2023; 109: 105773.     CrossRef
Rasiella rasia gen. nov. sp. nov. within the family Flavobacteriaceae isolated from seawater recirculating aquaculture system
Seong-Jin Kim , Young-Sam Kim , Sang-Eon Kim , Hyun-Kyoung Jung , Jeeeun Park , Min-Ju Yu , Kyoung-Ho Kim
J. Microbiol. 2022;60(11):1070-1076.   Published online October 17, 2022
DOI: https://doi.org/10.1007/s12275-022-2099-7
  • 491 View
  • 7 Download
  • 3 Web of Science
  • 3 Crossref
AbstractAbstract PDF
A novel bacterium designated RR4-40T was isolated from a biofilter of seawater recirculating aquaculture system in Busan, South Korea. Cells are strictly aerobic, Gram-negative, irregular short rod, non-motile, and oxidase- and catalase-negative. Growth was observed at 15–30°C, 0.5–6% NaCl (w/v), and pH 5.0–9.5. The strain grew optimally at 28°C, 3% salinity (w/v), and pH 8.5. The phylogenetic analysis based on 16S rRNA gene sequences showed that strain RR4-40T was most closely related to Marinirhabdus gelatinilytica NH83T (94.16% of 16S rRNA gene similarity) and formed a cluster with genera within the family Flavobacteriaceae. The values of the average nucleotide identity (ANI), digital DNA-DNA hybridization (dDDH), and average amino acid identity (AAI) between genomes of strain RR4-40T and M. gelatinilytica NH83T were 72.91, 18.2, and 76.84%, respectively, and the values against the strains in the other genera were lower than those. The major fatty acids were iso-C15:0 (31.34%), iso-C17:0 3-OH (13.65%), iso-C16:0 3-OH (10.61%), and iso-C15:1 G (10.38%). The polar lipids comprised phosphatidylglycerol, diphosphatidylglycerol, aminophospholipid, aminolipid, glycolipid, and sphingolipid. The major respiratory quinone was menaquinone-6 (MK-6) and the DNA G + C content of strain RR4-40T was 37.4 mol%. According to the polyphasic analysis, strain RR4-40T is considered to represent a novel genus within the family Flavobacteriaceae, for which the name Rasiella rasia gen. nov, sp. nov. is proposed. The type strain is RR4-40T (= KCTC 52650T = MCCC 1K04210T).

Citations

Citations to this article as recorded by  
  • Mesohalobacter salilacus sp. nov., a novel halotolerant, flexirubin-type pigment-producing bacterium of the family Flavobacteriaceae
    Shuai-Bo Han, Yang-Huan Yu, Xiao-Long He, Jin-Jia Liang, Min Wu, Can Chen, Xue-Wei Xu
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Rhodobacteraceae are Prevalent and Ecologically Crucial Bacterial Members in Marine Biofloc Aquaculture
    Meora Rajeev, Jang-Cheon Cho
    Journal of Microbiology.2024; 62(11): 985.     CrossRef
  • Validation List no. 215. Valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
Review
Transmissibility and pathogenicity of SARS-CoV-2 variants in animal models
Young-Il Kim , Mark Anthony B. Casel , Young Ki Choi
J. Microbiol. 2022;60(3):255-267.   Published online March 2, 2022
DOI: https://doi.org/10.1007/s12275-022-2033-z
  • 445 View
  • 0 Download
  • 12 Web of Science
  • 9 Crossref
AbstractAbstract PDF
As of February 2022, SARS-CoV-2 is still one of the most serious public health threats due to its high mortality rate and rapid spread of novel variants. Since the first outbreak in 2019, general understanding of SARS-CoV-2 has been improved through basic and clinical studies; however, knowledge gaps still exist in our understanding of the emerging novel SARSCoV- 2 variants, which impacts the corresponding development of vaccines and therapeutics. Especially, accumulation of mutations in SARS-CoV-2 and rapid spread in populations with previous immunity has resulted in selection of variants that evade the host immune response. This phenomenon threatens to render current SARS-CoV-2 vaccines ineffective for controlling the pandemic. Proper animal models are essential for detailed investigations into the viral etiology, transmission and pathogenesis mechanisms, as well as evaluation of the efficacy of vaccine candidates against recent SARS-CoV-2 variants. Further, the choice of animal model for each research topic is important for researchers to gain better knowledge of recent SARS-CoV-2 variants. Here, we review the advantages and limitations of each animal model, including mice, hamsters, ferrets, and non-human primates, to elucidate variant SARS-CoV-2 etiology and transmission and to evaluate therapeutic and vaccine efficacy.

Citations

Citations to this article as recorded by  
  • In vivo characterization of ACE2 expression in Sprague-Dawley rats and cultured primary brain pericytes highlights the utility of Rattus norvegicus in the study of COVID-19 brain pathophysiology
    Eugene Park, Elaine Liu, Andrew J. Baker
    Brain Research.2025; 1848: 149333.     CrossRef
  • Utilizing non‐human primate models to combat recent COVID‐19/SARS‐CoV‐2 and viral infectious disease outbreaks
    Taeho Kwon
    Journal of Medical Primatology.2024;[Epub]     CrossRef
  • Early detection of highly transmissible viral variants using phylogenomics
    Michael R. May, Bruce Rannala
    Science Advances.2024;[Epub]     CrossRef
  • Animal Models, Zoonotic Reservoirs, and Cross-Species Transmission of Emerging Human-Infecting Coronaviruses
    Yakhouba Kane, Gary Wong, George F. Gao
    Annual Review of Animal Biosciences.2023; 11(1): 1.     CrossRef
  • SARS-CoV-2 Aerosol and Intranasal Exposure Models in Ferrets
    Elizabeth E. Zumbrun, Samantha E. Zak, Eric D. Lee, Philip A. Bowling, Sara I. Ruiz, Xiankun Zeng, Jeffrey W. Koehler, Korey L. Delp, Russel R. Bakken, Shannon S. Hentschel, Holly A. Bloomfield, Keersten M. Ricks, Tamara L. Clements, April M. Babka, John
    Viruses.2023; 15(12): 2341.     CrossRef
  • The Isolation and In Vitro Differentiation of Primary Fetal Baboon Tracheal Epithelial Cells for the Study of SARS-CoV-2 Host-Virus Interactions
    Bharathiraja Subramaniyan, Sunam Gurung, Manish Bodas, Andrew R. Moore, Jason L. Larabee, Darlene Reuter, Constantin Georgescu, Jonathan D. Wren, Dean A. Myers, James F. Papin, Matthew S. Walters
    Viruses.2023; 15(4): 862.     CrossRef
  • Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
    Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
    Journal of Microbiology and Biotechnology.2023; 33(12): 1587.     CrossRef
  • Two years of COVID-19 pandemic: where are we now?
    Jinjong Myoung
    Journal of Microbiology.2022; 60(3): 235.     CrossRef
  • SARS CoV-2 (Delta Variant) Infection Kinetics and Immunopathogenesis in Domestic Cats
    Miruthula Tamil Selvan, Sachithra Gunasekara, Ping Xiao, Kristen Griffin, Shannon R. Cowan, Sai Narayanan, Akhilesh Ramachandran, Darren E. Hagen, Jerry W. Ritchey, Jennifer M. Rudd, Craig A. Miller
    Viruses.2022; 14(6): 1207.     CrossRef
Journal Article
Structural and biochemical analysis of the PTPN4 PDZ domain bound to the C-terminal tail of the human papillomavirus E6 oncoprotein
Hye Seon Lee , Hye-Yeoung Yun , Eun-Woo Lee , Ho-Chul Shin , Seung Jun Kim , Bonsu Ku
J. Microbiol. 2022;60(4):395-401.   Published online January 28, 2022
DOI: https://doi.org/10.1007/s12275-022-1606-1
  • 411 View
  • 0 Download
  • 10 Web of Science
  • 9 Crossref
AbstractAbstract PDF
High-risk genotypes of human papillomaviruses (HPVs) are directly implicated in various abnormalities associated with cellular hyperproliferation, including cervical cancer. E6 is one of two oncoproteins encoded in the HPV genome, which recruits diverse PSD-95/Dlg/ZO-1 (PDZ) domain-containing human proteins through its C-terminal PDZ-binding motif (PBM) to be degraded by means of the proteasome pathway. Among the three PDZ domain-containing protein tyrosine phosphatases, protein tyrosine phosphatase non-receptor type 3 (PTPN3) and PTPN13 were identified to be recognized by HPV E6 in a PBM-dependent manner. However, whether HPV E6 associates with PTPN4, which also has a PDZ domain and functions as an apoptosis regulator, remains undetermined. Herein, we present structural and biochemical evidence demonstrating the direct interaction between the PBM of HPV16 E6 and the PDZ domain of human PTPN4 for the first time. X-ray crystallographic structure determination and binding measurements using isothermal titration calorimetry demonstrated that hydrophobic interactions in which Leu158 of HPV16 E6 plays a key role and a network of intermolecular hydrogen bonds sustain the complex formation between PTPN4 PDZ and the PBM of HPV16 E6. In addition, it was verified that the corresponding motifs from several other highrisk HPV genotypes, including HPV18, HPV31, HPV33, and HPV45, bind to PTPN4 PDZ with comparable affinities, suggesting that PTPN4 is a common target of various pathogenic HPV genotypes.

Citations

Citations to this article as recorded by  
  • De-regulation of aurora kinases by oncogenic HPV; implications in cancer development and treatment
    Kemi Hannah Oladipo, Joanna L. Parish
    Tumour Virus Research.2025; 19: 200314.     CrossRef
  • Crystal structures of the μ2 subunit of clathrin-adaptor protein 2 in complex with peptides derived from human papillomavirus 16 E7
    Sujin Jung, Dahwan Lim, Joon Sig Choi, Ho-Chul Shin, Seung Jun Kim, Bonsu Ku
    Journal of Microbiology.2025; 63(8): e2505003.     CrossRef
  • Bioinformatics Analysis of Human Papillomavirus 16 Integration in Cervical Cancer: Changes in MAGI-1 Expression in Premalignant Lesions and Invasive Carcinoma
    Oscar Catalán-Castorena, Olga Lilia Garibay-Cerdenares, Berenice Illades-Aguiar, Rocio Castillo-Sánchez, Ma. Isabel Zubillaga-Guerrero, Marco Antonio Leyva-Vazquez, Sergio Encarnacion-Guevara, Eugenia Flores-Alfaro, Mónica Ramirez-Ruano, Luz del Carmen Al
    Cancers.2024; 16(12): 2225.     CrossRef
  • Comparative structural studies on Bovine papillomavirus E6 oncoproteins: Novel insights into viral infection and cell transformation from homology modeling and molecular dynamics simulations
    Lucas Alexandre Barbosa de Oliveira Santos, Tales de Albuquerque Leite Feitosa, Marcus Vinicius de Aragão Batista
    Genetics and Molecular Biology.2024;[Epub]     CrossRef
  • Crystal Structures of Plk1 Polo-Box Domain Bound to the Human Papillomavirus Minor Capsid Protein L2-Derived Peptide
    Sujin Jung, Hye Seon Lee, Ho-Chul Shin, Joon Sig Choi, Seung Jun Kim, Bonsu Ku
    Journal of Microbiology.2023; 61(8): 755.     CrossRef
  • The effects of HPV oncoproteins on host communication networks: Therapeutic connotations
    Josipa Skelin, Ho Yin Luk, Dražan Butorac, Siaw Shi Boon, Vjekoslav Tomaić
    Journal of Medical Virology.2023;[Epub]     CrossRef
  • Structural analysis of human papillomavirus E6 interactions with Scribble PDZ domains
    Bryce Z. Stewart, Sofia Caria, Patrick O. Humbert, Marc Kvansakul
    The FEBS Journal.2023; 290(11): 2868.     CrossRef
  • Viral manipulation of cell polarity signalling
    Airah Javorsky, Patrick O. Humbert, Marc Kvansakul
    Biochimica et Biophysica Acta (BBA) - Molecular Cell Research.2023; 1870(7): 119536.     CrossRef
  • Mechanistic role of HPV-associated early proteins in cervical cancer: Molecular pathways and targeted therapeutic strategies
    Rahul Bhattacharjee, Sabya Sachi Das, Smruti Sudha Biswal, Arijit Nath, Debangshi Das, Asmita Basu, Sumira Malik, Lamha Kumar, Sulagna Kar, Sandeep Kumar Singh, Vijay Jagdish Upadhye, Danish Iqbal, Suliman Almojam, Shubhadeep Roychoudhury, Shreesh Ojha, J
    Critical Reviews in Oncology/Hematology.2022; 174: 103675.     CrossRef
Review
Coordinated regulation of interferon and inflammasome signaling pathways by SARS-CoV-2 proteins
Na-Eun Kim , Yoon-Jae Song
J. Microbiol. 2022;60(3):300-307.   Published online January 28, 2022
DOI: https://doi.org/10.1007/s12275-022-1502-8
  • 425 View
  • 0 Download
  • 5 Web of Science
  • 5 Crossref
AbstractAbstract PDF
Type I and III interferons (IFNs) and the nucleotide-binding domain (NBD) leucine-rich repeat (LRR)-containing receptor (NLR) family pyrin domain containing 3 (NLRP3) inflammasome play pivotal roles in the pathogenesis of SARS-CoV-2. While optimal IFN and inflammasome responses are essential for limiting SARS-CoV-2 infection, aberrant activation of these innate immune responses is associated with COVID-19 pathogenesis. In this review, we focus our discussion on recent findings on SARS-CoV-2-induced type I and III IFNs and NLRP3 inflammasome responses and the viral proteins regulating these mechanisms.

Citations

Citations to this article as recorded by  
  • The impact of polymorphic variants of interferon receptor genes on COVID-19 severity and antibiotic resistance
    E. A. Krieger, O. V. Samodova, O. A. Svitich, R. V. Samoilikov, E. A. Meremianina, L. V. Ivanova, N. A. Bebyakova, E. N. Ilina, A. V. Pavlenko, Yu. I. Esin, A. L. Arkhipova, S. N. Kovalchuk, A. V. Kudryavtsev
    Russian Journal of Infection and Immunity.2024; 13(6): 1027.     CrossRef
  • SARS-CoV-2 ORF8 as a Modulator of Cytokine Induction: Evidence and Search for Molecular Mechanisms
    Marília Inês Móvio, Giovana Waner Carneiro de Almeida, Isabella das Graças Lopes Martines, Gilmara Barros de Lima, Sergio Daishi Sasaki, Alexandre Hiroaki Kihara, Emma Poole, Michael Nevels, Maria Cristina Carlan da Silva
    Viruses.2024; 16(1): 161.     CrossRef
  • Sensing of viral lung infections by cGAS-STING
    Lei Fang, Michael Roth
    Exploration of Immunology.2022; : 303.     CrossRef
  • Two years of COVID-19 pandemic: where are we now?
    Jinjong Myoung
    Journal of Microbiology.2022; 60(3): 235.     CrossRef
  • The Potential of Purinergic Signaling to Thwart Viruses Including SARS-CoV-2
    Davide Ferrari, Michele Rubini, Jorge S. Burns
    Frontiers in Immunology.2022;[Epub]     CrossRef
Journal Article
Geographic diversity in Helicobacter pylori oipA genotype between Korean and United States isolates
Aeryun Kim , Jing Lai , D. Scott Merrell , Ji-Hye Kim , Hanfu Su , Jeong-Heon Cha
J. Microbiol. 2021;59(12):1125-1132.   Published online October 31, 2021
DOI: https://doi.org/10.1007/s12275-021-1450-8
  • 416 View
  • 0 Download
  • 4 Web of Science
  • 3 Crossref
AbstractAbstract PDF
Helicobacter pylori outer membrane inflammatory protein A (OipA) was originally named for its role in inducing inflammation in the host, as evidenced by high mucosal IL-8 levels. Expression of OipA is regulated by phase variation of a CT dinucleotide-repeat located in the 5􍿁􀁇region of the gene. However, little is known about OipA geographic diversity across isolates. To address this gap, we conducted a large-scale molecular epidemiologic analysis using H. pylori clinical isolates obtained from two geographically distinct populations: Korea and the United States (US). Most Korean isolates (98.7%) possessed two copies of oipA located at two specific loci (A and B) while all US isolates contained only one copy of oipA at locus A. Furthermore, most Korean oipA (94.8%) possessed three or less CT repeats while most US oipA (96.6%) contained five or more CT repeats. Among the two copies, all Korean H. pylori possessed at least one oipA ‘on’ phase variant while the single copy of oipA in US isolates showed 56.2% ‘on’ and 43.8% ‘off.’ Thus, host differences seem to have driven geographic diversification of H. pylori across these populations such that OipA expression in US isolates is still regulated by phase variation with 5 or more CT repeats, while Korean isolates always express OipA; duplication of the oipA combined with a reduction of CT repeats to three or less ensures continued expression. En masse, these findings suggest that diversity in the oipA gene copy number, CT repeats, and phase variation among H. pylori from different populations may confer a benefit in adaptation to particular host populations.

Citations

Citations to this article as recorded by  
  • Pathogenicity and virulence of Helicobacter pylori : A paradigm of chronic infection
    Marguerite Clyne, Tadhg Ó Cróinín
    Virulence.2025;[Epub]     CrossRef
  • Genetic diversity of the oipA gene among Helicobacter pylori isolates and clinical outcome in Vietnam
    Thi Hong Nhung Thai, Hong Phong Nguyen, Thi Hai Yen Nguyen, Thi Be Hai Nguyen, Thai Hoa Nguyen, Thi Mai Ngan Nguyen, Thi Minh Thi Ha
    Infection, Genetics and Evolution.2023; 112: 105438.     CrossRef
  • Characterization of East-Asian Helicobacter pylori encoding Western EPIYA-ABC CagA
    Kavinda Tissera, Myeong-A Kim, Jing Lai, Sacheera Angulmaduwa, Aeryun Kim, D. Scott Merrell, Ji-Hye Kim, Hanfu Su, Jeong-Heon Cha
    Journal of Microbiology.2022; 60(2): 207.     CrossRef
Review
Overview of bioinformatic methods for analysis of antibiotic resistome from genome and metagenome data
Kihyun Lee , Dae-Wi Kim , Chang-Jun Cha
J. Microbiol. 2021;59(3):270-280.   Published online February 23, 2021
DOI: https://doi.org/10.1007/s12275-021-0652-4
  • 443 View
  • 0 Download
  • 22 Web of Science
  • 21 Crossref
AbstractAbstract PDF
Whole genome and metagenome sequencing are powerful approaches that enable comprehensive cataloging and profiling of antibiotic resistance genes at scales ranging from a single clinical isolate to ecosystems. Recent studies deal with genomic and metagenomic data sets at larger scales; therefore, designing computational workflows that provide high efficiency and accuracy is becoming more important. In this review, we summarize the computational workflows used in the research field of antibiotic resistome based on genome or metagenome sequencing. We introduce workflows, software tools, and data resources that have been successfully employed in this rapidly developing field. The workflow described in this review can be used to list the known antibiotic resistance genes from genomes and metagenomes, quantitatively profile them, and investigate the epidemiological and evolutionary contexts behind their emergence and transmission. We also discuss how novel antibiotic resistance genes can be discovered and how the association between the resistome and mobilome can be explored.

Citations

Citations to this article as recorded by  
  • The Application of artificial intelligence in periprosthetic joint infection
    Pengcheng Li, Yan Wang, Runkai Zhao, Lin Hao, Wei Chai, Chen Jiying, Zeyu Feng, Quanbo Ji, Guoqiang Zhang
    Journal of Advanced Research.2026; 79: 633.     CrossRef
  • Evolution of pathogenic Escherichia coli harboring the transmissible locus of stress tolerance: from food sources to clinical environments
    Maxsueli Machado, Pedro Panzenhagen, Flávia Figueira Aburjaile, Bertram Brenig, Mateus Matiuzzi da Costa, Vasco Ariston de Carvalho Azevedo, Eduardo Eustáquio de Souza Figueiredo, Carlos Adam Conte-Junior
    Scientific Reports.2025;[Epub]     CrossRef
  • Integrating whole-genome sequencing into antimicrobial resistance surveillance: methodologies, challenges, and perspectives
    Yasufumi Matsumura, Masaki Yamamoto, Ryota Gomi, Yasuhiro Tsuchido, Koh Shinohara, Taro Noguchi, Miki Nagao, Jose M. Munita, Alexander Sundermann
    Clinical Microbiology Reviews.2025;[Epub]     CrossRef
  • Unraveling resistance mechanisms in combination therapy: A comprehensive review of recent advances and future directions
    Nami Morales-Durán, Angel León-Buitimea, José R. Morones-Ramírez
    Heliyon.2024; 10(6): e27984.     CrossRef
  • Resistome Mapping in Foodborne Pathogens: Understanding Role in the Transmission Dynamics of Resistance Genes
    Muneer Oladipupo Yaqub, Chinedu Eucharia Joseph, Aashika Jain, Lekshmi K. Edison
    Applied Microbiology.2024; 4(4): 1476.     CrossRef
  • Metagenomic assemblies tend to break around antibiotic resistance genes
    Anna Abramova, Antti Karkman, Johan Bengtsson-Palme
    BMC Genomics.2024;[Epub]     CrossRef
  • Comprehensive genomic landscape of antibiotic resistance in Staphylococcus epidermidis
    Do-Hoon Lee, Kihyun Lee, Yong-Seok Kim, Chang-Jun Cha, Jack A. Gilbert
    mSystems.2024;[Epub]     CrossRef
  • Web-Based Tools Validation for Antimicrobial Resistance Prediction: An Empirical Comparative Analysis
    Sweta Padma Routray, Swayamprabha Sahoo, Debasish Swapnesh Kumar Nayak, Sejal Shah, Tripti Swarnkar
    SN Computer Science.2024;[Epub]     CrossRef
  • Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater
    Nafi’u Abdulkadir, Joao Pedro Saraiva, Junya Zhang, Stefan Stolte, Osnat Gillor, Hauke Harms, Ulisses Rocha, Adriana E. Rosato
    Microbiology Spectrum.2024;[Epub]     CrossRef
  • Identification of Antibiotic Resistance in ESKAPE Pathogens through Plasmonic Nanosensors and Machine Learning
    Ting Yu, Ying Fu, Jintao He, Jun Zhang, Yunlei Xianyu
    ACS Nano.2023; 17(5): 4551.     CrossRef
  • The challenges of defining the human nasopharyngeal resistome
    Lucy O’Connor, Robert Heyderman
    Trends in Microbiology.2023; 31(8): 816.     CrossRef
  • Resistome profiling reveals transmission dynamics of antimicrobial resistance genes from poultry litter to soil and plant
    Animesh Tripathi, Dinesh Kumar, Priyank Chavda, Dalip Singh Rathore, Ramesh Pandit, Damer Blake, Fiona Tomley, Madhvi Joshi, Chaitanya G. Joshi, Suresh Kumar Dubey
    Environmental Pollution.2023; 327: 121517.     CrossRef
  • Prioritization of Critical Factors for Surveillance of the Dissemination of Antibiotic Resistance in Pseudomonas aeruginosa: A Systematic Review
    Jung Hun Lee, Nam-Hoon Kim, Kyung-Min Jang, Hyeonku Jin, Kyoungmin Shin, Byeong Chul Jeong, Dae-Wi Kim, Sang Hee Lee
    International Journal of Molecular Sciences.2023; 24(20): 15209.     CrossRef
  • Flavobacterium psychrotrophum sp. nov. and Flavobacterium panacagri sp. nov., Isolated from Freshwater and Soil
    Yong-Seok Kim, Eun-Mi Hwang, Chang-Myeong Jeong, Chang-Jun Cha
    Journal of Microbiology.2023; 61(10): 891.     CrossRef
  • Antimicrobial Resistance Genes (ARGs), the Gut Microbiome, and Infant Nutrition
    Rufus J. Theophilus, Diana Hazard Taft
    Nutrients.2023; 15(14): 3177.     CrossRef
  • Metagenomic Insight into Sulfonamide-Induced Variation in Antibiotic Resistome of Soil Associated with Taxonomy, Mobile Genetic Elements (MGEs), and Function
    Mi Li, Xiaoyu Xiao, Zhangsong Jiang, Haihui Tang, Lingling Rong, Tiao Zhang, Taijia Li, Cui Hu, Ligui Wu, Xiaoming Zou
    ACS Agricultural Science & Technology.2022; 2(1): 123.     CrossRef
  • Gold nanoparticle-DNA aptamer-assisted delivery of antimicrobial peptide effectively inhibits Acinetobacter baumannii infection in mice
    Jaeyeong Park, Eunkyoung Shin, Ji-Hyun Yeom, Younkyung Choi, Minju Joo, Minho Lee, Je Hyeong Kim, Jeehyeon Bae, Kangseok Lee
    Journal of Microbiology.2022; 60(1): 128.     CrossRef
  • Promising Acinetobacter baumannii Vaccine Candidates and Drug Targets in Recent Years
    Yong Chiang Tan, Chandrajit Lahiri
    Frontiers in Immunology.2022;[Epub]     CrossRef
  • Recent Advances in Rapid Antimicrobial Susceptibility Testing
    Rucha Datar, Sylvain Orenga, Romain Pogorelcnik, Olivier Rochas, Patricia J Simner, Alex van Belkum
    Clinical Chemistry.2021; 68(1): 91.     CrossRef
  • Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element (ICE)
    Francesco Santoro, Valeria Fox, Alessandra Romeo, Elisa Lazzeri, Gianni Pozzi, Francesco Iannelli
    Mobile DNA.2021;[Epub]     CrossRef
  • Omics-based microbiome analysis in microbial ecology: from sequences to information
    Jang-Cheon Cho
    Journal of Microbiology.2021; 59(3): 229.     CrossRef
Journal Articles
Biosynthesis of adipic acid in metabolically engineered Saccharomyces cerevisiae
Xi Zhang , Yingli Liu , Jing Wang , Yunying Zhao , Yu Deng
J. Microbiol. 2020;58(12):1065-1075.   Published online October 23, 2020
DOI: https://doi.org/10.1007/s12275-020-0261-7
  • 737 View
  • 1 Download
  • 17 Web of Science
  • 17 Crossref
AbstractAbstract PDF
Adipic Acid (AA) is a valued platform chemical compound, which can be used as a precursor of nylon-6,6. Due to the generation of an enormous amount of nitric oxide metabolites and the growing depletion of oil resources as a result of AA production from a mixture of cyclohexanol and cyclohexanone, the microbial methods for synthesizing AA have attracted significant attention. Of the several AA-producing pathways, the reverse adipate degradation pathway in Thermobifida fusca (Tfu RADP) is reported to be the most efficient, which has been confirmed in Escherichia coli. In this study, the heterologous Tfu RADP was constructed for producing AA in S. cerevisiae by co-expressing genes of Tfu_ 0875, Tfu_2399, Tfu_0067, Tfu_1647, Tfu_2576, and Tfu_ 2576. The AA titer combined with biomass, cofactors and other by-products was all determined after fermentation. During batch fermentation in a shake flask, the maximum AA titer was 3.83 mg/L, while the titer increased to 10.09 mg/L during fed-batch fermentation in a 5-L bioreactor after fermentation modification.

Citations

Citations to this article as recorded by  
  • Synthetic biology strategies for sustainable bioplastic production by yeasts
    Huong-Giang Le, Yongjae Lee, Sun-Mi Lee
    Journal of Microbiology.2025; 63(3): e2501022.     CrossRef
  • Production of dicarboxylates from ω-amino acids using a cofactor- and co-substrate-free in vitro biosynthetic system
    Jinxin Yan, Hui Zhang, Hongxu Zhang, Hairong Yu, Wenjia Tian, Mingyuan Liu, Weikang Sun, Leilei Guo, Xiaoxu Tan, Kaiyu Gao, Tianyi Jiang, Chuanjuan Lü, Qianjin Kang, Wensi Meng, Cuiqing Ma, Chao Gao, Ping Xu
    Engineering Microbiology.2025; 5(3): 100210.     CrossRef
  • Comparative Analysis of Biotechnological and Catalytic Approaches to Synthesizing Organic Acids
    K. N. Sorokina, Yu. V. Samoylova, V. N. Parmon
    Catalysis in Industry.2025; 17(1): 75.     CrossRef
  • Synthetic biology: pioneering the next bio revolution for a sustainable planet
    Suhad A A Al-Salihi, Kathryn L Ford, Murnita M Mahyudin, Hamidun Bunawan
    Journal of Applied Microbiology.2025;[Epub]     CrossRef
  • Experimental, modeling and optimisation of adipic acid reactive extraction using ionic liquids
    Elena Niculina Dragoi, Alexandra Cristina Blaga, Dan Cascaval, Anca Irina Galaction
    Journal of Molecular Liquids.2024; 410: 125564.     CrossRef
  • Structure sensitivity of the electrochemical hydrogenation of cis,cis-muconic acid to hexenedioic acid and adipic acid
    Deep M. Patel, Prathamesh T. Prabhu, Geet Gupta, Marco Nazareno Dell'Anna, Samantha Kling, Huy T. Nguyen, Jean-Philippe Tessonnier, Luke T. Roling
    Green Chemistry.2024; 26(8): 4506.     CrossRef
  • Exploring the Potential of Bio-plasticizers: Functions, Advantages, and Challenges in Polymer Science
    Felipe Martins de Souza, Ram K. Gupta
    Journal of Polymers and the Environment.2024; 32(11): 5499.     CrossRef
  • Poly (Butylene Adipate‐Co‐Terephthalate) (PBAT) – Based Biocomposites: A Comprehensive Review
    Blessing E. Itabana, Amar K. Mohanty, Phil Dick, Mohini Sain, Atul Bali, Mike Tiessen, Loong‐Tak Lim, Manjusri Misra
    Macromolecular Materials and Engineering.2024;[Epub]     CrossRef
  • Comparative analysis of biotechnological and catalytic approaches to the production of organic acids
    K. N. Sorokina, Y. V. Samoylova, V. N. Parmon
    Kataliz v promyshlennosti.2024; 24(3): 73.     CrossRef
  • Mid–Long Chain Dicarboxylic Acid Production via Systems Metabolic Engineering: Progress and Prospects
    Shanna Gu, Fuzhou Zhu, Lin Zhang, Jianping Wen
    Journal of Agricultural and Food Chemistry.2024; 72(11): 5555.     CrossRef
  • Toward the use of mixed microbial cultures for the biological production of adipic and levulinic acid
    Fernanda Pinto-Ibieta, Mara Cea, Antonio Serrano, Fernando E. Felissia, María Cristina Area, Francisco Cabrera, Gustavo Ciudad
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Producing malonate in Saccharomyces cerevisiae via the β-alanine pathway
    Shiyun Li, Wenxuan Fu, Ruifang Su, Yunying Zhao, Yu Deng
    Systems Microbiology and Biomanufacturing.2023; 3(2): 328.     CrossRef
  • Engineering yeast cell factories to produce biodegradable plastics and their monomers: Current status and prospects
    Feng-Li Zhang, Lin Zhang, Du-Wen Zeng, Sha Liao, Yachao Fan, Verawat Champreda, Weerawat Runguphan, Xin-Qing Zhao
    Biotechnology Advances.2023; 68: 108222.     CrossRef
  • Sustainable Routes for the Synthesis of Renewable Adipic Acid from Biomass Derivatives
    Man Lang, Hao Li
    ChemSusChem.2022;[Epub]     CrossRef
  • Research Progress on the Construction of Artificial Pathways for the Biosynthesis of Adipic Acid by Engineered Microbes
    Yuchen Ning, Huan Liu, Renwei Zhang, Yuhan Jin, Yue Yu, Li Deng, Fang Wang
    Fermentation.2022; 8(8): 393.     CrossRef
  • Opportunities in the microbial valorization of sugar industrial organic waste to biodegradable smart food packaging materials
    Sandhya Jayasekara, Lakshika Dissanayake, Lahiru N. Jayakody
    International Journal of Food Microbiology.2022; 377: 109785.     CrossRef
  • Implementation of Synthetic Pathways to Foster Microbe-Based Production of Non-Naturally Occurring Carboxylic Acids and Derivatives
    Ana Vila-Santa, Fernão C. Mendes, Frederico C. Ferreira, Kristala L. J. Prather, Nuno P. Mira
    Journal of Fungi.2021; 7(12): 1020.     CrossRef
Exploring the antibiotic resistome in activated sludge and anaerobic digestion sludge in an urban wastewater treatment plant via metagenomic analysis
Keunje Yoo , Hyunji Yoo , Jangho Lee , Eun Joo Choi , Joonhong Park
J. Microbiol. 2020;58(2):123-130.   Published online December 23, 2019
DOI: https://doi.org/10.1007/s12275-020-9309-y
  • 419 View
  • 0 Download
  • 64 Web of Science
  • 54 Crossref
AbstractAbstract PDF
Antibiotic resistance genes (ARGs) are emerging contaminants that pose a potential threat to human health worldwide. Urban wastewater treatment plants (WWTPs) are a main source of both antibiotic-resistant bacteria and ARGs released into the environment. Nevertheless, the propagation of ARGs and their underlying mechanisms and the dynamics of mobile genetic elements (MGEs) in WWTPs have rarely been investigated in South Korea. In this study, shotgun metagenomic analysis was used to identify comprehensive ARGs and their mechanisms, bacterial communities, and MGEs from 4 configurations with 2 activated sludge (AS) and 2 anaerobic digestion sludge (ADS) samples. A total of 181 ARG subtypes belonging to 22 ARG types were broadly detected, and the ARG abundances in the AS samples were 1.3–2.0 orders of magnitude higher than in the ADS samples. Multidrug and bacitracin resistance genes were the predominant ARG types in AS samples, followed by ARGs against sulfonamide, tetracycline, and β-lactam. However, the composition of ARG types in ADS samples was significantly changed. The abundance of multidrug and β-lactam resistance genes was drastically reduced in the ADS samples. The resistance genes of MLS were the predominant, followed by ARGs against sulfonamide and tetracycline in the ADS samples. In addition, plasmids were the dominant MGEs in the AS samples, while integrons (intI1) were the dominant MGEs in the ADS samples. These results provide valuable information regarding the prevalence of ARG types and MGEs and the difference patterns between the AS and ADS systems.

Citations

Citations to this article as recorded by  
  • Proximity‐Ligation Metagenomic Sequence Analysis Reveals That the Antibiotic Resistome Makes Significant Transitions During Municipal Wastewater Treatment
    Cassandra B. McCorison, Taegyu Kim, Justin J. Donato, Timothy M. LaPara
    Environmental Microbiology.2025;[Epub]     CrossRef
  • Metatranscriptomic time series insight into antibiotic resistance genes and mobile genetic elements in wastewater systems under antibiotic selective pressure
    An-Dong Li, Yuanfang Chen, Lei Han, Ye Li, Ming Xu, Baoli Zhu
    BMC Microbiology.2025;[Epub]     CrossRef
  • Bacterial and DNA contamination of a small freshwater waterway used for drinking water after a large precipitation event
    Carolina Oliveira de Santana, Pieter Spealman, David Gresham, M. Elias Dueker, Gabriel G. Perron
    Science of The Total Environment.2025; 972: 179010.     CrossRef
  • Particle size of zero-valent iron affects the risks from antibiotic resistance genes in waste activated sludge during anaerobic digestion
    Lina Pang, Jianglin Chen, Wenqian Li, Efthalia Chatzisymeon, Kailin Xu, Ping Yang
    Journal of Hazardous Materials.2025; 490: 137785.     CrossRef
  • Antibiotic resistance genes in anaerobic digestion: Unresolved challenges and potential solutions
    Chunxiao Wang, Xiaole Yin, Xiaoqing Xu, Dou Wang, Yubo Wang, Tong Zhang
    Bioresource Technology.2025; 419: 132075.     CrossRef
  • Spatiotemporal distribution of the planktonic microbiome and antibiotic resistance genes in a typical urban river contaminated by macrolide antibiotics
    Chuanmao Yang, Shiwei Yan, Baihuan Zhang, Xiunan Yao, Jiezhang Mo, Fozia Rehman, Jiahua Guo
    Environmental Research.2024; 262: 119808.     CrossRef
  • Resistomes in freshwater bioaerosols and their impact on drinking and recreational water safety: A perspective
    Salametu Saibu, Ishara Uhanie Perera, Satoru Suzuki, Xavier Rodó, So Fujiyoshi, Fumito Maruyama
    Environment International.2024; 183: 108377.     CrossRef
  • An evaluation of conventional and nature-based technologies for controlling antibiotic-resistant bacteria and antibiotic-resistant genes in wastewater treatment plants
    Moushumi Hazra, Joy E.M. Watts, John B. Williams, Himanshu Joshi
    Science of The Total Environment.2024; 917: 170433.     CrossRef
  • Sewage sludge: A review of its risks and circular raw material potential
    Halyna Kominko, Katarzyna Gorazda, Zbigniew Wzorek
    Journal of Water Process Engineering.2024; 63: 105522.     CrossRef
  • Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater
    Nafi’u Abdulkadir, Joao Pedro Saraiva, Junya Zhang, Stefan Stolte, Osnat Gillor, Hauke Harms, Ulisses Rocha, Adriana E. Rosato
    Microbiology Spectrum.2024;[Epub]     CrossRef
  • A review of wastewater-based epidemiology for antimicrobial resistance surveillance
    Leah M. Clarke, Jake W. O’Brien, Aimee K. Murray, William H. Gaze, Kevin V. Thomas
    Journal of Environmental Exposure Assessment.2024;[Epub]     CrossRef
  • Antibiotic Resistance Genes – An Emerging Genetic Pollutant of LFL
    Jennet Debora J., Vijayalakshmi V., Rajaguru P., Rajeswari S., Brindha R.
    Water, Air, & Soil Pollution.2024;[Epub]     CrossRef
  • Unveiling the hidden hazards of smog: health implications and antibiotic resistance in perspective
    Muhammad Imran Khan, Arshia Amin, Muhammad Tariq Khan, Hafsa Jabeen, Shafqat Rasul Chaudhry
    Aerobiologia.2024; 40(3): 353.     CrossRef
  • Marine plastisphere selectively enriches microbial assemblages and antibiotic resistance genes during long-term cultivation periods
    Hyunsu Kim, Keunje Yoo
    Environmental Pollution.2024; 344: 123450.     CrossRef
  • Microbial symbiotic electrobioconversion of carbon dioxide to biopolymer (poly (3-hydroxybutyrate)) via single-step microbial electrosynthesis cell
    Giang T.H. Le, Hend Omar Mohamed, Hyunsu Kim, Keunje Yoo, Tasnim Eisa, Dipak A. Jadhav, Ha T.T. Nguyen, Hyerim Eam, Jaewook Myung, Pedro Castaño, Kyu-Jung Chae
    Chemical Engineering Journal.2024; 500: 156635.     CrossRef
  • Performance of sewage sludge treatment for the removal of antibiotic resistance genes: Status and prospects
    Shiyu Yin, Le Gao, Xiumin Fan, Shuhong Gao, Xu Zhou, Wenbiao Jin, Zhongqi He, Qilin Wang
    Science of The Total Environment.2024; 907: 167862.     CrossRef
  • Impacts of microplastic type on the fate of antibiotic resistance genes and horizontal gene transfer mechanism during anaerobic digestion
    Ming Xu, Peng Gao, Yuan Gao, Shi-jin Xiong, Hao-qiang Chen, Xiao-xiao Shen
    Journal of Environmental Management.2024; 360: 121090.     CrossRef
  • Quaternary ammonia compounds in disinfectant products: evaluating the potential for promoting antibiotic resistance and disrupting wastewater treatment plant performance
    Zihao Lu, Anna K. Mahony, William A. Arnold, Christopher W. Marshall, Patrick J. McNamara
    Environmental Science: Advances.2024; 3(2): 208.     CrossRef
  • Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples
    Xiaole Yin, Xi Chen, Xiao-Tao Jiang, Ying Yang, Bing Li, Marcus Ho-Hin Shum, Tommy T. Y. Lam, Gabriel M. Leung, Joan Rose, Concepcion Sanchez-Cid, Timothy M. Vogel, Fiona Walsh, Thomas U. Berendonk, Janet Midega, Chibuzor Uchea, Dominic Frigon, Gerard D.
    Environmental Science & Technology.2023; 57(26): 9713.     CrossRef
  • Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing
    David Calderón-Franco, Mark C. M. van Loosdrecht, Thomas Abeel, David G. Weissbrodt
    Antonie van Leeuwenhoek.2023; 116(7): 667.     CrossRef
  • Effects of micron-scale zero valent iron on behaviors of antibiotic resistance genes and pathogens in thermophilic anaerobic digestion of waste activated sludge
    Wenqian Li, Lina Pang, Efthalia Chatzisymeon, Ping Yang
    Bioresource Technology.2023; 376: 128895.     CrossRef
  • Exploring antibiotic resistance genes, mobile gene elements, and virulence gene factors in an urban freshwater samples using metagenomic analysis
    Sohail M. Noman, Muhammad Shafiq, Shabana Bibi, Bharti Mittal, Yumeng Yuan, Mi Zeng, Xin Li, Oluwaseyi Abraham Olawale, Xiaoyang Jiao, Muhammad Irshad
    Environmental Science and Pollution Research.2023; 30(2): 2977.     CrossRef
  • Mining-related multi-resistance genes in sulfate-reducing bacteria treatment of typical karst nonferrous metal(loid) mine tailings in China
    Jian-li Liu, Jun Yao, De-liang Zhou, Bang Liu, Houquan Liu, Miaomiao Li, Chenchen Zhao, Geoffrey Sunahara, Robert Duran
    Environmental Science and Pollution Research.2023; 30(47): 104753.     CrossRef
  • Variations in antibiotic resistance genes and microbial community in sludges passing through biological nutrient removal and anaerobic digestion processes in municipal wastewater treatment plants
    Shahbaz Raza, Kyeong Hwan Kang, Juhee Shin, Seung Gu Shin, Jihyun Chun, Hyun Uk Cho, Jingyeong Shin, Young Mo Kim
    Chemosphere.2023; 313: 137362.     CrossRef
  • Drinking water sources as hotspots of antibiotic-resistant bacteria (ARB) and antibiotic resistance genes (ARGs): Occurrence, spread, and mitigation strategies
    Shengnan Li, Brim Stevy Ondon, Shih-Hsin Ho, Qixing Zhou, Fengxiang Li
    Journal of Water Process Engineering.2023; 53: 103907.     CrossRef
  • Co-Existence and Proliferation of Heavy Metal and Antibiotic Resistance in Urban Sewage Treatment Plants
    Sonia Gupta, T. R. Sreekrishnan, Shaikh Ziauddin Ahammad
    SSRN Electronic Journal .2022;[Epub]     CrossRef
  • Mining-Related Multi-Resistance Genes in Typical Nonferrous Metal(Loid) Tailing Impoundments Under Bio-Restoration
    Jianli Liu, Jun Yao, Deliang Zhou, Hao Li, Bang Liu, Houquan Liu, Miaomiao Li, Chenchen Zhao, Geoffrey Sunahara, Robert Duran
    SSRN Electronic Journal .2022;[Epub]     CrossRef
  • A review of the emergence of antibiotic resistance in bioaerosols and its monitoring methods
    Gihan Lee, Keunje Yoo
    Reviews in Environmental Science and Bio/Technology.2022; 21(3): 799.     CrossRef
  • Lime addition significantly attenuates tetracycline resistance genes and class 1 integrons in dewatered sludge by affecting bacterial profiles
    Maoxia Chen, Jiali Chang, Tao Jiang, Shiqian Wei, Jiawei Zou, Juan Yang, Xuguang Ma
    Journal of Environmental Chemical Engineering.2022; 10(3): 107429.     CrossRef
  • Fate of antibiotic resistant genes in wastewater environments and treatment strategies - A review
    Ranjith Kumar Manoharan, Fahmida Ishaque, Young-Ho Ahn
    Chemosphere.2022; 298: 134671.     CrossRef
  • mobileOG-db: a Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements
    Connor L. Brown, James Mullet, Fadi Hindi, James E. Stoll, Suraj Gupta, Minyoung Choi, Ishi Keenum, Peter Vikesland, Amy Pruden, Liqing Zhang, Hideaki Nojiri
    Applied and Environmental Microbiology.2022;[Epub]     CrossRef
  • The prevalence and removal of antibiotic resistance genes in full-scale wastewater treatment plants: Bacterial host, influencing factors and correlation with nitrogen metabolic pathway
    Qian Ping, Zhipeng Zhang, Liping Ma, Tingting Yan, Lin Wang, Yongmei Li
    Science of The Total Environment.2022; 827: 154154.     CrossRef
  • Effects of heavy metals on the development and proliferation of antibiotic resistance in urban sewage treatment plants
    Sonia Gupta, T.R. Sreekrishnan, Shaikh Ziauddin Ahammad
    Environmental Pollution.2022; 308: 119649.     CrossRef
  • Mining-Related Multi-Resistance Genes in Typical Nonferrous Metal(Loid) Tailing Impoundments Under Bio-Restoration
    Jianli Liu, Jun Yao, Deliang Zhou, Hao Li, Bang Liu, Houquan Liu, Miaomiao Li, Chenchen Zhao, Geoffrey Sunahara, Robert Duran
    SSRN Electronic Journal .2022;[Epub]     CrossRef
  • Genetic and genomic characterization of multidrug resistant Bacillus subtilis M3 isolated from an activated sludge reactor treating wastewater
    Hafeez Ul Haq, Wei Huang, Ye Li, Ting Zhang, Shaocheng Ma, Yajing Zhang, Yongkang Song, Daiyan Lin, Baoyu Tian
    Biologia.2022; 77(4): 1151.     CrossRef
  • Wastewater treatment plants as reservoirs and sources for antibiotic resistance genes: A review on occurrence, transmission and removal
    Yu-Xi Gao, Xing Li, Xiao-Yan Fan, Jun-Ru Zhao, Zhong-Xing Zhang
    Journal of Water Process Engineering.2022; 46: 102539.     CrossRef
  • Metagenomics analysis of probable transmission of determinants of antibiotic resistance from wastewater to the environment – A case study
    Wiktor Zieliński, Jakub Hubeny, Martyna Buta-Hubeny, Damian Rolbiecki, Monika Harnisz, Łukasz Paukszto, Ewa Korzeniewska
    Science of The Total Environment.2022; 827: 154354.     CrossRef
  • Impact of Anthropogenic Activities on the Dissemination of ARGs in the Environment—A Review
    Małgorzata Czatzkowska, Izabela Wolak, Monika Harnisz, Ewa Korzeniewska
    International Journal of Environmental Research and Public Health.2022; 19(19): 12853.     CrossRef
  • Higher abundance of core antimicrobial resistant genes in effluent from wastewater treatment plants
    Shahbaz Raza, Hanseob Shin, Hor-Gil Hur, Tatsuya Unno
    Water Research.2022; 208: 117882.     CrossRef
  • Metagenomic Analysis Reveals the Fate of Antibiotic Resistance Genes in a Full-Scale Wastewater Treatment Plant in Egypt
    Osama S. Ali, Walaa G. Hozayen, Abdulwahab S. Almutairi, Sherif A. Edris, Aala A. Abulfaraj, Amged A. Ouf, Hamada M. Mahmoud
    Sustainability.2021; 13(20): 11131.     CrossRef
  • Shotgun metagenomic analysis reveals the prevalence of antibiotic resistance genes and mobile genetic elements in full scale hospital wastewater treatment plants
    Ranjith Kumar Manoharan, Sathiyaraj Srinivasan, Gnanendra Shanmugam, Young-Ho Ahn
    Journal of Environmental Management.2021; 296: 113270.     CrossRef
  • Employing bacteria machinery for antibiotic detection: Using DNA gyrase for ciprofloxacin detection
    Ana R. Cardoso, Liliana P.T. Carneiro, Gustavo Cabral-Miranda, Martin F. Bachmann, M. Goreti F. Sales
    Chemical Engineering Journal.2021; 409: 128135.     CrossRef
  • Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective
    Misung Kim, Jaeeun Park, Mingyeong Kang, Jihye Yang, Woojun Park
    Journal of Microbiology.2021; 59(6): 535.     CrossRef
  • Monitoring antibiotic resistance genes in wastewater treatment: Current strategies and future challenges
    Anh Q. Nguyen, Hang P. Vu, Luong N. Nguyen, Qilin Wang, Steven P. Djordjevic, Erica Donner, Huabing Yin, Long D. Nghiem
    Science of The Total Environment.2021; 783: 146964.     CrossRef
  • Agricultural Soils Amended With Thermally-Dried Anaerobically-Digested Sewage Sludge Showed Increased Risk of Antibiotic Resistance Dissemination
    Leire Jauregi, Lur Epelde, Itziar Alkorta, Carlos Garbisu
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Antibiotic resistome from the One-Health perspective: understanding and controlling antimicrobial resistance transmission
    Dae-Wi Kim, Chang-Jun Cha
    Experimental & Molecular Medicine.2021; 53(3): 301.     CrossRef
  • Occurrence and Distribution of Antibiotic Resistance Genes in Municipal Wastewater Treatment Plants with D-Type Filters
    Haoze Wang, Bing Li, Jiaheng Zhao, Yongjing Tian, Yong Qiu
    Water.2021; 13(23): 3398.     CrossRef
  • Mining-Related Multi-Resistance Genes in Typical Karst Nonferrous Metal(Loid) Tailing Impoundments Under Bio-Restoration
    Jianli Liu, Jun Yao, Deliang Zhou, Hao Li, Bang Liu, Weihua Cui, Xinyuan Li, Hang Meng, Robert Duran
    SSRN Electronic Journal .2021;[Epub]     CrossRef
  • Role of anaerobic sludge digestion in handling antibiotic resistant bacteria and antibiotic resistance genes – A review
    Achmad Syafiuddin, Raj Boopathy
    Bioresource Technology.2021; 330: 124970.     CrossRef
  • Investigation of the Prevalence of Antibiotic Resistance Genes According to the Wastewater Treatment Scale Using Metagenomic Analysis
    Keunje Yoo, Gihan Lee
    Antibiotics.2021; 10(2): 188.     CrossRef
  • Remediating oxytetracycline-contaminated aquaculture water using nano calcium peroxide (nCaO2) produced from flue gas desulfurization (FGD) gypsum
    Piyarat Vijuksungsith, Tunlawit Satapanajaru, Chanat Chokejaroenrat, Chalor Jarusutthirak, Chainarong Sakulthaew, Ann Kambhu, Rattana Boonprasert
    Environmental Technology & Innovation.2021; 24: 101861.     CrossRef
  • Metagenomic exploration of antibiotic resistome in treated wastewater effluents and their receiving water
    Shahbaz Raza, Hyejun Jo, Jungman Kim, Hanseob Shin, Hor-Gil Hur, Tatsuya Unno
    Science of The Total Environment.2021; 765: 142755.     CrossRef
  • Effects of prescription antibiotics on soil- and root-associated microbiomes and resistomes in an agricultural context
    Francisco Cerqueira, Anastasis Christou, Despo Fatta-Kassinos, Maria Vila-Costa, Josep Maria Bayona, Benjamin Piña
    Journal of Hazardous Materials.2020; 400: 123208.     CrossRef
  • Metagenomic Profiles of Antibiotic Resistance Genes in Activated Sludge, Dewatered Sludge and Bioaerosols
    Il Han, Keunje Yoo
    Water.2020; 12(6): 1516.     CrossRef
Diluted conventional media improve the microbial cultivability from aquarium seawater
Jing Sun , Jiazhen Guo , Qian Yang , Jie Huang
J. Microbiol. 2019;57(9):759-768.   Published online August 3, 2019
DOI: https://doi.org/10.1007/s12275-019-9175-7
  • 392 View
  • 0 Download
  • 12 Web of Science
  • 11 Crossref
AbstractAbstract PDF
The cultivation of microbial species remains a primary challenge in microbiology and obtaining pure cultures is essential for the study of microbial physiology and function. When isolating microorganisms from aquaculture environments, Vibrio are the most dominate isolates on the media that are commonly used. In order to expand our ability to study microbial species, an easy-operation and low-cost medium that can reduce the interference of Vibrio strains and increase the cultivability of other bacteria is urgently needed. We compared viable cell counts on conventional media (CM; including Marine Agar 2216 and LB media) and diluted media (DM; including 1/10-Marine Agar 2216, 1/10-LB). We also assessed the diversity of cultivable microorganisms under high and low nutrient conditions by a plate-wash strategy coupled with high-throughput sequencing of the V4 hypervariable region of the 16S rRNA gene. The results show that microbial communities from DM, especially 1/10-Marine Agar 2216, are more diverse than those obtained from CM. Vibrio isolates were reduced on DM. PICRUSt analysis revealed that nutrient composition is a significant contributor to the diversity and function of the cultivable microbial communities. Bacteria grown on CM possess more pathogenic characteristics, whereas DM favors the growth of bacteria that have multiple metabolic functions. Collectively, our data provide strong evidence that dilution of CM influences the cultivability of bacteria from aquaculture seawater. It also supports that DM can expand the range of microbial species that can be cultivated. This study also provides insights for media design in microbial cultivation from aquaculture systems.

Citations

Citations to this article as recorded by  
  • In vitro domestication of halophyte microbiota for future SynCom application
    Nada A. Moner, Tarek R. Elsayed, Wafaa M. Amer, Mervat A. Hamza, Hanan H. Youssef, Randa M. Abdel-Fatah, Mahmoud S. Abdelwahab, Omar M. Shahat, Gehan H. Youssef, Mahmoud El-Tahan, Mohamed Fayez, Florian Fricke, Silke Ruppel, Nabil A. Hegazi
    Plant and Soil.2025;[Epub]     CrossRef
  • Heterologous Expression and Functional Analysis of Exiguobacterium Algin Lyase Gene by Pichia pastoris
    Hanwen Wu, Kai Hou, Yutong Jiang, Mingjian Luan, Yuxia Sun, Xi He, Xiangzhong Zhao
    Fermentation.2025; 11(1): 34.     CrossRef
  • Microbial diversity and ecological roles of halophilic microorganisms in Dingbian (Shaanxi, China) saline-alkali soils and salt lakes
    Yue Ding, Juntao Ke, Tao Hong, Aodi Zhang, Xue Wu, Xinran Jiang, Shilong Shao, Ming Gong, Shengda Zhao, Liang Shen, Shaoxing Chen
    BMC Microbiology.2025;[Epub]     CrossRef
  • Unexpected methane oxidation acceleration by two species of bacteria from the rainwater promoting Methylomonas sp. in the soil
    Yuxuan Sang, Jia Tang, Oumei Wang, Qinqin Hao, Shiling Zheng, Fanghua Liu
    Journal of Environmental Chemical Engineering.2024; 12(5): 113895.     CrossRef
  • Glucose addition improves the culture performance of Pacific white shrimp by regulating the assembly of Rhodobacteraceae taxa in gut bacterial community
    Pengsheng Dong, Haipeng Guo, Lei Huang, Demin Zhang, Kai Wang
    Aquaculture.2023; 567: 739254.     CrossRef
  • Reaching unreachables: Obstacles and successes of microbial cultivation and their reasons
    Gabriela Kapinusova, Marco A. Lopez Marin, Ondrej Uhlik
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • The Metabolomics Changes in Luria–Bertani Broth Medium under Different Sterilization Methods and Their Effects on Bacillus Growth
    Haifeng Wang, Juan Guo, Xing Chen, Hongxuan He
    Metabolites.2023; 13(8): 958.     CrossRef
  • Conjugative Transfer of Acute Hepatopancreatic Necrosis Disease-Causing pVA1-Type Plasmid Is Mediated by a Novel Self-Encoded Type IV Secretion System
    Dehao Wang, Liying Wang, Dexi Bi, Jipeng Song, Guohao Wang, Ye Gao, Kathy F. J. Tang, Fanzeng Meng, Jingmei Xie, Fan Zhang, Jie Huang, Jianliang Li, Xuan Dong, Jennifer M. Auchtung, Songzhe Fu
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Culturomics of Bacteria from Radon-Saturated Water of the World’s Oldest Radium Mine
    Gabriela Kapinusova, Kunal Jani, Tereza Smrhova, Petr Pajer, Irena Jarosova, Jachym Suman, Michal Strejcek, Ondrej Uhlik, Jing Han
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Diluted Luria-Bertani medium vs. sewage sludge as growth media: comparison of community structure and diversity in the culturable bacteria
    Kazuo Yamamoto, Shotaro Toya, Sarah Sabidi, Yuki Hoshiko, Toshinari Maeda
    Applied Microbiology and Biotechnology.2021; 105(9): 3787.     CrossRef
  • Plant Broth- (Not Bovine-) Based Culture Media Provide the Most Compatible Vegan Nutrition for In Vitro Culturing and In Situ Probing of Plant Microbiota
    Hend Elsawey, Sascha Patz, Rahma A. Nemr, Mohamed S. Sarhan, Mervat A. Hamza, Hanan H. Youssef, Mohamed R. Abdelfadeel, Hassan-Sibroe A. Daanaa, Mahmoud El-Tahan, Mohamed Abbas, Mohamed Fayez, Katja Witzel, Silke Ruppel, Nabil A. Hegazi
    Diversity.2020; 12(11): 418.     CrossRef
Cyanobacterial biodiversity of semiarid public drinking water supply reservoirs assessed via next-generation DNA sequencing technology
Adriana Sturion Lorenzi , Mathias Ahii Chia , Fabyano Alvares Cardoso Lopes , Genivaldo Gueiros Z. Silva , Robert A. Edwards , Maria do Carmo Bittencourt-Oliveira
J. Microbiol. 2019;57(6):450-460.   Published online May 27, 2019
DOI: https://doi.org/10.1007/s12275-019-8349-7
  • 340 View
  • 0 Download
  • 15 Web of Science
  • 13 Crossref
AbstractAbstract PDF
Next-generation DNA sequencing technology was applied to generate molecular data from semiarid reservoirs during well-defined seasons. Target sequences of 16S-23S rRNA ITS and cpcBA-IGS were used to reveal the taxonomic groups of cyanobacteria present in the samples, and genes coding for cyanotoxins such as microcystins (mcyE), saxitoxins (sxtA), and cylindrospermopsins (cyrJ) were investigated. The presence of saxitoxins in the environmental samples was evaluated using ELISA kit. Taxonomic analyses of high-throughput DNA sequencing data showed the dominance of the genus Microcystis in Mundaú reservoir. Furthermore, it was the most abundant genus in the dry season in Ingazeira reservoir. In the rainy season, 16S-23S rRNA ITS analysis revealed that Cylindrospermopsis raciborskii comprised 46.8% of the cyanobacterial community in Ingazeira reservoir, while the cpcBAIGS region revealed that C. raciborskii (31.8%) was the most abundant taxon followed by Sphaerospermopsis aphanizomenoides (17.3%) and Planktothrix zahidii (16.6%). Despite the presence of other potential toxin-producing genera, the detected sxtA gene belonged to C. raciborskii, while the mcyE gene belonged to Microcystis in both reservoirs. The detected mcyE gene had good correlation with MC content, while the amplification of the sxtA gene was related to the presence of STX. The cyrJ gene was not detected in these samples. Using DNA analyses, our results showed that the cyanobacterial composition of Mundaú reservoir was similar in successive dry seasons, and it varied between seasons in Ingazeira reservoir. In addition, our data suggest that some biases of analysis influenced the cyanobacterial communities seen in the NGS output of Ingazeira reservoir.

Citations

Citations to this article as recorded by  
  • The Need to Increase Strain-Specific DNA Information from the Invasive Cyanobacteria Sphaerospermopsis aphanizomenoides and Cuspidothrix issatschenkoi
    Daniela R. de Figueiredo
    Water.2025; 17(4): 579.     CrossRef
  • Unveiling the trifecta of cyanobacterial quorum sensing: LuxI, LuxR and LuxS as the intricate machinery for harmful algal bloom formation in freshwater ecosystems
    Vajagathali Mohammed, Jesu Arockiaraj
    Science of The Total Environment.2024; 924: 171644.     CrossRef
  • Correlations Between Spatiotemporal Variations in Phytoplankton Community Structure and Physicochemical Parameters in the Seungchon and Juksan Weirs
    Hyeonsu Chung, Misun Son, Taesung Kim, Jonghwan Park, Won-Seok Lee
    Water.2024; 16(20): 2976.     CrossRef
  • Comparison of the phytoplankton community compositions between the temperate reservoir and the downstream river areas of the Han River, Korea
    Yeon-Su Lee, Taehee Kim, Buhari Lawan Muhammad, Jang-Seu Ki
    Journal of Freshwater Ecology.2023;[Epub]     CrossRef
  • Assessing Freshwater Microbiomes from Different Storage Sources in the Caribbean Using DNA Metabarcoding
    Joseph Cross, Prasanna Honnavar, Xegfred Quidet, Travis Butler, Aparna Shivaprasad, Linroy Christian
    Microorganisms.2023; 11(12): 2945.     CrossRef
  • Unbiased analyses of ITS folding motifs in a taxonomically confusing lineage: Anagnostidinema visiae sp. nov. (cyanobacteria)
    Callahan A. McGovern, Alyson R. Norwich, Aimee L. Thomas, Sarah E. Hamsher, Bopaiah A. Biddanda, Anthony D. Weinke, Dale A. Casamatta
    Journal of Phycology.2023; 59(3): 619.     CrossRef
  • Subacute and sublethal ingestion of microcystin-LR impairs lung mitochondrial function by an oligomycin-like effect
    Flávia Muniz de Mesquita, Dahienne Ferreira de Oliveira, Dayene de Assis Fernandes Caldeira, João Paulo Cavalcante de Albuquerque, Leonardo Matta, Caroline Coelho de Faria, Itanna Isis Araujo de Souza, Christina Maeda Takiya, Rodrigo Soares Fortunato, Jos
    Environmental Toxicology and Pharmacology.2022; 93: 103887.     CrossRef
  • Characterization of Bacterial Communities from the Surface and Adjacent Bottom Layers of Water in the Billings Reservoir
    Marta Angela Marcondes, Andrezza Nascimento, Rodrigo Pessôa, Jefferson Russo Victor, Alberto José da Silva Duarte, Patricia Bianca Clissa, Sabri Saeed Sanabani
    Life.2022; 12(8): 1280.     CrossRef
  • Scarus spinus, crustose coralline algae and cyanobacteria: an example of dietary specialization in the parrotfishes
    Georgina M. Nicholson, Kendall D. Clements
    Coral Reefs.2022; 41(5): 1465.     CrossRef
  • Shotgun metagenomic sequencing reveals the full taxonomic, trophic, and functional diversity of a coral reef benthic cyanobacterial mat from Bonaire, Caribbean Netherlands
    Ethan C. Cissell, Sophie J. McCoy
    Science of The Total Environment.2021; 755: 142719.     CrossRef
  • Disentangling the drivers of Microcystis decomposition: Metabolic profile and co-occurrence of bacterial community
    Shengnan Chen, Miaomiao Yan, Tinglin Huang, Hui Zhang, Kaiwen Liu, Xin Huang, Nan Li, Yutian Miao, Raju Sekar
    Science of The Total Environment.2020; 739: 140062.     CrossRef
  • Effect of acute exposure of saxitoxin on development of zebrafish embryos (Danio rerio)
    Guoliang Chen, Zimu Jia, Linping Wang, Tingzhang Hu
    Environmental Research.2020; 185: 109432.     CrossRef
  • The presence of microcystins in the coastal waters of Nigeria, from the Bights of Bonny and Benin, Gulf of Guinea
    Medina O Kadiri, Solomon Isagba, Jeffrey U Ogbebor, Osasere A. Omoruyi, Timothy E. Unusiotame-Owolagba, Adriana Sturion Lorenzi, Maria do Carmo Bittencourt-Oliveira, Mathias Ahii Chia
    Environmental Science and Pollution Research.2020; 27(28): 35284.     CrossRef
Prevalence of human Norovirus by genotype in contaminated groundwater in Korea over the last decade (2007–2016)
Siwon Lee , Junhyeong Jang , Kyungseon Bae , Wonseok Lee , Hyenmi Chung , Sangjung Park
J. Microbiol. 2018;56(12):926-931.   Published online November 27, 2018
DOI: https://doi.org/10.1007/s12275-018-8340-8
  • 368 View
  • 0 Download
  • 6 Crossref
AbstractAbstract PDF
This study investigated the occurrence of human Norovirus (HuNoV) by genotype in 1,486 groundwater samples collected from 843 groundwater wells suspected of contamination during 2007–2016, in South Korea. We identified and genotyped 186 HuNoV sequences in 178 HuNoV-positive samples using the RIVM-NoroNet norovirus genotyping tool (NGT) and phylogenetic tree analysis based on RIVM-NoroNet reference sequences. HuNoV GII was more prevalent than GI. The major genotypes detected were HuNoV GII.4 (43.0%), GII.22 (15.6%), GI.5 (10.2%), and GI.1 (8.6%); several genotypes accounted for < 5.0% of all HuNoVs, including GII.17, GI.6, GI.4, GII.6, GI.8, GII.3, GII.13, GI.3, GI.7, GI.2, GI.9, GII.1, GII.8, and GII.10. The prevalence of HuNoVs and number of genotypes detected has drastically decreased over the last decade. HuNoV GII.17, the emerging genotype worldwide including Europe and Asia, appeared in Korean groundwater from 2010, dominated in 2013–2014, and continued to be observed. HuNoV GII.4, the major type occurred last decade from Korean groundwater except 2013–2014, continued to be detected and prevalent similar to HuNoV GII.17 in 2016.

Citations

Citations to this article as recorded by  
  • Development of diagnostic systems for wide range and highly sensitive detection of two waterborne hepatitis viruses from groundwater using the conventional reverse transcription nested PCR assay
    Kyung-Seon Bae, Siwon Lee, Jin-Young Lee, Ji-Hye Kim, Youn-Lee Joo, Soo Hyung Lee, Hyen-Mi Chung, Kyung-A You
    Journal of Virological Methods.2022; 299: 114344.     CrossRef
  • Assessment of Genetic Diversity of Noroviruses Circulating in Temporary Accommodation Centers for Refugees in the Rostov Region in 2022 Using the NoroNetRus Online Software
    Alexey S. Vodop’ianov, Ruslan V. Pisanov, Sergey O. Vodop’ianov, Olga S. Chemisova, Artem A. Gerasimenko, Aleksey K. Noskov, Sergey S. Slis, Svetlana A. Nenadskaya, Anastasia D. Koreneva, Alina V. Kolomoitseva, Evgeny V. Kovalev, Anna R. Litovko, Nina V.
    ЗДОРОВЬЕ НАСЕЛЕНИЯ И СРЕДА ОБИТАНИЯ - ЗНиСО / PUBLIC HEALTH AND LIFE ENVIRONMENT.2022; : 82.     CrossRef
  • Enteric virus presence in green vegetables and associated irrigation waters in a rural area from Argentina. A quantitative microbial risk assessment
    Prez Verónica Emilse, Victoria Matías, Martínez Laura Cecilia, Giordano Miguel Oscar, Masachessi Gisela, DiCola Guadalupe, Ré Viviana Elizabeth, Paván Jorge Victorio, Colina Rodney, Nates Silvia Viviana, Barril Patricia Angélica
    LWT.2021; 144: 111201.     CrossRef
  • Characteristics of Norovirus Food Poisoning Outbreaks in Korea in the 2000s
    Jong-Gyu Kim, Joong-Soon Kim, Jeong-Gyoo Kim
    Journal of Food Protection.2021; 84(3): 472.     CrossRef
  • Prevalence of emerging torque teno virus (TTV) in drinking water, natural waters and wastewater networks (DWNWWS): A systematic review and meta-analysis of the viral pollution marker of faecal and anthropocentric contaminations
    Temitope C. Ekundayo
    Science of The Total Environment.2021; 771: 145436.     CrossRef
  • Development and Evaluation of a SYBR Green-Based, Real-time Polymerase Chain Reaction for Rapid and Specific Detection of Human Coxsackievirus B5
    Kyu Bong Cho
    Biomedical Science Letters.2020; 26(4): 302.     CrossRef
Flavobacterium parvum sp. nov., isolated from soil polluted by sewer water
Hyun Seo Lee , Woon Mo Hwang , Keunsoo Kang , Tae-Young Ahn
J. Microbiol. 2018;56(8):542-548.   Published online July 25, 2018
DOI: https://doi.org/10.1007/s12275-018-8145-9
  • 401 View
  • 0 Download
  • 3 Crossref
AbstractAbstract PDF
A novel Gram-stain-negative, motile by means of gliding, and short rod-shaped bacterium, designated HS916T, was isolated from soil polluted by sewer water in Cheonan-si, South Korea. Growth occurred at 10–35°C (optimum 30°C), pH 6.0–8.0 (optimum pH 7.0), and 0–1% sodium chloride (NaCl, w/v). Based on similarities of 16S rRNA gene sequences, strain HS916T was closely related to members of the genus Flavobacterium, exhibiting the highest sequence similarities with Flavobacterium glycines Gm-149T (96.4%), followed by F. granuli Kw05T (96.3%), F. fluminis 3R17T (96.3%), F. aquicola TMd3a3T (96.2%), and F. nitratireducens N1T (96.2%). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain HS916T was placed in a monophyletic cluster with F. nitratireducens N1T and F. fluminis 3R17T. The predominant fatty acids (> 5% of the total) of strain HS916T were iso-C15:0, anteiso-C15:0, iso-C15:0 3-OH, C17:1 ω6с, C16:0 3-OH, iso-C17:0 3-OH, and summed feature 3 (C16:1 ω7с and/or C16:1 ω6с). The major polar lipids of the strain comprised phosphatidylethanolamine, unidentified aminolipids, and five unidentified lipids. The predominant respiratory quinone and the major polyamine were menaquinone-6 (MK-6) and symhomospermidine, respectively. The DNA G + C content of strain HS916T was 34.9 mol%. Based on polyphasic analyses, strain HS916T represents a novel species belonging to the genus Flavobacterium, for which the name Flavobacterium parvum sp. nov. is proposed. The type strain is HS916T (= KACC 19448T = JCM 32368T).

Citations

Citations to this article as recorded by  
  • Bacterial Community Structure Responds to Soil Management in the Rhizosphere of Vine Grape Vineyards
    Barnabás Kovács, Marco Andreolli, Silvia Lampis, Borbála Biró, Zsolt Kotroczó
    Biology.2024; 13(4): 254.     CrossRef
  • Ten Novel Species Belonging to the Genus Flavobacterium, Isolated from Freshwater Environments: F. praedii sp. nov., F. marginilacus sp. nov., F. aestivum sp. nov., F. flavigenum sp. nov., F. luteolum sp. nov., F. gelatinilyticum sp. nov., F. aquiphilum s
    Hyunyoung Jo, Miri S. Park, Yeonjung Lim, Ilnam Kang, Jang-Cheon Cho
    Journal of Microbiology.2023; 61(5): 495.     CrossRef
  • Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
    Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
    Journal of Microbiology.2022; 60(9): 890.     CrossRef
Pedobacter aquicola sp. nov., isolated from freshwater
Yochan Joung , Hye-jin Jang , Miri Park , Jaeho Song , Jang-Cheon Cho
J. Microbiol. 2018;56(7):478-484.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-7499-3
  • 416 View
  • 0 Download
  • 11 Crossref
AbstractAbstract PDF
A non-motile, pink-pigmented bacterial strain designated IMCC25679T, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679T formed a lineage within the genus Pedobacter. The strain IMCC25679T was closely related to Pedobacter daechungensis Dae 13T (96.4% sequence similarity), Pedobacter rivuli HME8457T (95.3%) and Pedobacter lentus DS-40T (94.3%). The major fatty acids of IMCC- 25679T were iso-C15:0, iso-C16:0 and summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679T was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679T represents a novel species within the genus Pedobacter, with the proposed name Pedobacter aquicola, sp. nov. The type strain is IMCC25679T (= KACC 19486T = NBRC113131T).

Citations

Citations to this article as recorded by  
  • Genome-Based Classification of Pedobacter albus sp. nov. and Pedobacter flavus sp. nov. Isolated from Soil
    Nhan Le Thi Tuyet, Jaisoo Kim
    Diversity.2024; 16(5): 292.     CrossRef
  • Pedobacter rhodius sp. nov. and Pedobacter punctiformis sp. nov., isolated from soil
    Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Screening of potential microbial markers for lung cancer using metagenomic sequencing
    Qiang Chen, Kai Hou, Mingze Tang, Shuo Ying, Xiaoyun Zhao, Guanhua Li, Jianhui Pan, Xiaomin He, Han Xia, Yuechuan Li, Zheng Lou, Li Zhang
    Cancer Medicine.2023; 12(6): 7127.     CrossRef
  • Pedobacter aquae sp. nov., a multi-drug resistant bacterium isolated from fresh water
    Le Tran Tien Chau, Yong-Seok Kim, Chang-Jun Cha
    Antonie van Leeuwenhoek.2022; 115(3): 445.     CrossRef
  • Pedobacter riviphilus sp. nov., isolated from stream sediment
    Hong Sik Im, Yochan Joung, Sang-Seob Lee
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Complete Genome Sequence of Pedobacter sp. PAMC26386 and Their Low Temperature Application in Arabinose-containing Polysaccharides Degradation
    Cya-Yong Cho, So-Ra Han, Tae-Jin Oh
    Current Microbiology.2021; 78(3): 944.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George Garrity
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4043.     CrossRef
  • Pedobacter indicus sp. nov., isolated from deep-sea sediment
    Xiao-yan He, Na Li, Xiu-lan Chen, Yu-zhong Zhang, Xi-ying Zhang, Xiao-yan Song
    Antonie van Leeuwenhoek.2020; 113(3): 357.     CrossRef
  • Leeia aquatica sp. nov., isolated from freshwater
    Jaeho Song, Yochan Joung, Shan-Hui Li, Juchan Hwang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(11): 5848.     CrossRef
  • Sphingobacterium chungjuense sp. nov., isolated from a freshwater lake
    Jaeho Song, Yochan Joung, Shan-Hui Li, Juchan Hwang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6126.     CrossRef
  • Rhodoferax lacus sp. nov., isolated from a large freshwater lake
    Miri Park, Jaeho Song, Gi Gyun Nam, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(10): 3135.     CrossRef
Metagenomic analysis reveals the prevalence and persistence of antibiotic- and heavy metal-resistance genes in wastewater treatment plant
Sachin Kumar Gupta , Hanseob Shin , Dukki Han , Hor-Gil Hur , Tatsuya Unno
J. Microbiol. 2018;56(6):408-415.   Published online June 1, 2018
DOI: https://doi.org/10.1007/s12275-018-8195-z
  • 380 View
  • 0 Download
  • 72 Crossref
AbstractAbstract PDF
The increased antibiotic resistance among microorganisms has resulted into growing interest for investigating the wastewater treatment plants (WWTPs) as they are reported to be the major source in the dissemination of antibiotic resistance genes (ARGs) and heavy metal resistance genes (HMRGs) in the environment. In this study, we investigated the prevalence and persistence of ARGs and HMRGs as well as bacterial diversity and mobile genetic elements (MGEs) in influent and effluent at the WWTP in Gwangju, South Korea, using high-throughput sequencing based metagenomic approach. A good number of broad-spectrum of resistance genes (both ARG and HMRG) were prevalent and likely persistent, although large portion of them were successfully removed at the wastewater treatment process. The relative abundance of ARGs and MGEs was higher in effluent as compared to that of influent. Our results suggest that the resistance genes with high abundance and bacteria harbouring ARGs and MGEs are likely to persist more through the treatment process. On analyzing the microbial community, the phylum Proteobacteria, especially potentially pathogenic species belonging to the genus Acinetobacter, dominated in WWTP. Overall, our study demonstrates that many ARGs and HMRGs may persist the treatment processes in WWTPs and their association to MGEs may contribute to the dissemination of resistance genes among microorganisms in the environment.

Citations

Citations to this article as recorded by  
  • Molecular-level degradation of antibiotic resistance genes in electrochemical oxidation: Targeting promoter regions
    Longmei Qiu, Jing Zhang, Chengzhen Liang, Hongna Li
    Journal of Hazardous Materials.2026; 502: 140639.     CrossRef
  • Bacterial Communities and Resistance and Virulence Genes in Hospital and Community Wastewater: Metagenomic Analysis
    Maria Elena Velazquez-Meza, Miguel Galarde-López, Patricia Cornejo-Juárez, Miriam Bobadilla-del-Valle, Ernestina Godoy-Lozano, Edgar Aguilar-Vera, Berta Alicia Carrillo-Quiroz, Alfredo Ponce de León-Garduño, Consuelo Velazquez Acosta, Celia Mercedes Alpuc
    International Journal of Molecular Sciences.2025; 26(5): 2051.     CrossRef
  • Alterations in microbial communities and antibiotic resistance genes pre- and post-sludge bulking in a wastewater treatment plant
    Longfei Zhang, Siyu Wang, Yangyang Jia, Ziteng Liu, Junqin Yao, Yinguang Chen
    Environmental Pollution.2025; 376: 126391.     CrossRef
  • Emerging technologies for detecting antibiotics in aquaculture wastewater: A critical review
    Xinyu Chang, Junchi Cui, Guihua Wang, Shujuan Meng, Lingling Chen, Meng Zhang
    Environmental Science and Ecotechnology.2025; 25: 100572.     CrossRef
  • Whole-genome sequencing characterization of silver-resistant bacteria from the outfall of wastewater treatment plants and effluent-receiving rivers
    Yubing Xia, Haichen Wang, Jun Li, Haolan Wang, Yuyao Wang, Yongmei Hu, Fengjun Xia, Mingxiang Zou, John R. Spear
    Applied and Environmental Microbiology.2025;[Epub]     CrossRef
  • Antimicrobial resistance transmission in the environmental settings through traditional and UV-enabled advanced wastewater treatment plants: a metagenomic insight
    Absar Talat, Yasir Bashir, Nadeem Khalil, Connor L. Brown, Dinesh Gupta, Asad Ullah Khan
    Environmental Microbiome.2025;[Epub]     CrossRef
  • Pilot-Scale Quaternary Treatment of Municipal Wastewater for Agricultural Reuse: Removal of Pharmaceuticals and Compliance with EU Regulation 2020/741
    Filip Takács, Jakub Jurík, Petra Nováková, Andrea Vojs Staňová, Barbora Jankovičová, Igor Bodík
    ACS Agricultural Science & Technology.2025; 5(12): 2575.     CrossRef
  • A review focusing on mechanisms and ecological risks of enrichment and propagation of antibiotic resistance genes and mobile genetic elements by microplastic biofilms
    Ranran Zhou, Xirong Huang, Zhongtang Xie, Zhuhong Ding, Hengchen Wei, Qijie Jin
    Environmental Research.2024; 251: 118737.     CrossRef
  • Evaluation of the Rhizosphere Resistome of Cultivated Soils Polluted with Antibiotics from Reclaimed Wastewater
    Begoña Mayans, Sergio Zamora-Martin, Rafael Antón-Herrero, Carlos García-Delgado, Laura Delgado-Moreno, María Guirado, Javier Pérez-Esteban, Mª Luz Segura, Consuelo Escolástico, Enrique Eymar
    Agronomy.2024; 14(6): 1118.     CrossRef
  • Presence and Persistence of ESKAPEE Bacteria before and after Hospital Wastewater Treatment
    Miguel Galarde-López, Maria Elena Velazquez-Meza, Elizabeth Ernestina Godoy-Lozano, Berta Alicia Carrillo-Quiroz, Patricia Cornejo-Juárez, Alejandro Sassoé-González, Alfredo Ponce-de-León, Pedro Saturno-Hernández, Celia Mercedes Alpuche-Aranda
    Microorganisms.2024; 12(6): 1231.     CrossRef
  • Strategic implementation of upflow microbubble airlift photocatalytic process to control heavy metal resistant-MDR bacteria and the associated genes in wastewater
    Fahmida Ishaque, Ranjith Kumar Manoharan, Young-Ho Ahn
    Chemical Engineering Journal.2024; 489: 151240.     CrossRef
  • Metagenome sequencing to unveil the occurrence and distribution of antibiotic resistome and in a wastewater treatment plant
    Zhonghong Li, Donghai Yuan, Yingying Kou, Xiaoguang Li, Caili Du
    Environmental Technology.2024; 45(10): 1933.     CrossRef
  • Comparison of qPCR and metagenomic sequencing methods for quantifying antibiotic resistance genes in wastewater
    Gihan Daw Elbait, Mariane Daou, Miral Abuoudah, Ahmed Elmekawy, Shadi W. Hasan, Dean B. Everett, Habiba Alsafar, Andreas Henschel, Ahmed F. Yousef, Clinton Moodley
    PLOS ONE.2024; 19(4): e0298325.     CrossRef
  • Reviewing the Phenomenon of Antimicrobial Resistance in Hospital and Municipal Wastewaters: The Crisis, the Challenges and Mitigation Methods
    Nazim Hasan, Embar Prasanna Kannan, Othman Hakami, Abdullah Ali Alamri, Judy Gopal, Manikandan Muthu
    Applied Sciences.2024; 14(18): 8358.     CrossRef
  • Use of reclaimed municipal wastewater in agriculture: Comparison of present practice versus an emerging paradigm of anaerobic membrane bioreactor treatment coupled with hydroponic controlled environment agriculture
    Abayomi Babatunde Alayande, Weiming Qi, Raghupathy Karthikeyan, Sudeep C. Popat, David A. Ladner, Gary Amy
    Water Research.2024; 265: 122197.     CrossRef
  • Antibiotic and Non-Antibiotic Determinants of Antimicrobial Resistance: Insights from Water Ecosystems
    Poonam Sharma, Namrata Pal, Manoj Kumawat, Shivam Mishra, Vinod Verma, Rajnarayan R Tiwari, Ravinder Nagpal, Devojit Kumar Sarma, Samradhi Singh, Manoj Kumar
    ACS ES&T Water.2024; 4(11): 4671.     CrossRef
  • Analytical techniques for assessing antimicrobial resistance: Conventional solutions, contemporary problems and futuristic outlooks
    Embar Prasanna Kannan, Judy Gopal, Manikandan Muthu
    TrAC Trends in Analytical Chemistry.2024; 178: 117843.     CrossRef
  • Prevalence of antibiotics, antibiotic resistance genes, and their associations in municipal wastewater treatment plants along the Yangtze River basin, China
    Yangyang Zhang, Yifan Hu, Xiuwen Li, Linjun Gao, Shuya Wang, Shuyu Jia, Peng Shi, Aimin Li
    Environmental Pollution.2024; 348: 123800.     CrossRef
  • Antimicrobial resistome and mobilome in the urban river affected by combined sewer overflows and wastewater treatment effluent
    Muhammad Adnan Sabar, Than Van Huy, Yoshinori Sugie, Hiroyuki Wada, Bo Zhao, Norihisa Matsuura, Masaru Ihara, Toru Watanabe, Hiroaki Tanaka, Ryo Honda
    Journal of Water and Health.2023; 21(8): 1032.     CrossRef
  • New insight into the microbiome, resistome, and mobilome on the dental waste water in the context of heavy metal environment
    Xiaoyang Jiao, Wenyan Guo, Xin Li, Fen Yao, Mi Zeng, Yumeng Yuan, Xiaoling Guo, Meimei Wang, Qing Dong Xie, Leshan Cai, Feiyuan Yu, Pen Yu, Yong Xia
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Removal of intI1, ARGs, and SARS-CoV-2 and changes in bacterial communities in four sewage treatment facilities
    Yovany Cuetero-Martínez, Karen Natalia Villamizar-Ojeda, Margarita Jazmín Hernández-Santiago, Daniel De los Cobos-Vasconcelos, José Félix Aguirre-Garrido, Yolanda López-Vidal, Adalberto Noyola
    Science of The Total Environment.2023; 903: 165984.     CrossRef
  • Next-generation Sequencing for Surveillance of Antimicrobial Resistance and Pathogenicity in Municipal Wastewater Treatment Plants
    Yovany Cuetero-Martínez, Daniel de los Cobos-Vasconcelos, José Felix Aguirre-Garrido, Yolanda Lopez-Vidal, Adalberto Noyola
    Current Medicinal Chemistry.2023; 30(1): 5.     CrossRef
  • Sustainable municipal wastewater treatment using an innovative integrated compact unit: microbial communities, parasite removal, and techno-economic analysis
    Mohamed El-Khateeb, Gamal K. Hassan, Mohamed Azab El-Liethy, Kamel M. El-Khatib, Hussein I. Abdel-Shafy, Anyi Hu, Mahmoud Gad
    Annals of Microbiology.2023;[Epub]     CrossRef
  • Microbial communities, resistance genes, and resistome risks in urban lakes of different trophic states: Internal links and external influences
    Chengzhi Mao, Xiao Wang, Xinghao Li, Qiaoyi Kong, Elvis Genbo Xu, Jie Huang
    Journal of Hazardous Materials Advances.2023; 9: 100233.     CrossRef
  • High diversity of the emerging pathogen Acinetobacter baumannii and other Acinetobacter spp. in raw manure, biogas plants digestates, and rural and urban wastewater treatment plants with system specific antimicrobial resistance profiles
    Dipen Pulami, Peter Kämpfer, Stefanie P. Glaeser
    Science of The Total Environment.2023; 859: 160182.     CrossRef
  • Water Quality, Heavy Metals, and Antifungal Susceptibility to Fluconazole of Yeasts from Water Systems
    Luz Dary Caicedo-Bejarano, Lizeth Stefania Osorio-Vanegas, Mauricio Ramírez-Castrillón, Jorge Enrique Castillo, Carlos Andrés Martínez-Garay, Mónica Chávez-Vivas
    International Journal of Environmental Research and Public Health.2023; 20(4): 3428.     CrossRef
  • Metagenomic analysis of microbial community structure and distribution of resistance genes in Daihai Lake, China
    Caili Du, Fang Yang, Xiaoguang Li, Haiqing Liao, Zhonghong Li, Jiayue Gao, Lieyu Zhang
    Environmental Pollution.2022; 302: 119065.     CrossRef
  • Spent waste from edible mushrooms offers innovative strategies for the remediation of persistent organic micropollutants: A review
    Anamika Ghose, Sudip Mitra
    Environmental Pollution.2022; 305: 119285.     CrossRef
  • Molecular Diagnostic Tools Applied for Assessing Microbial Water Quality
    Lisa Paruch
    International Journal of Environmental Research and Public Health.2022; 19(9): 5128.     CrossRef
  • Metal-Tolerant Bacteria of Wastewater Treatment Plant in a Large City
    Leonid Perelomov, Olga Sizova, Mohammad Mahmudur Rahman, Irina Perelomova, Tatiana Minkina, Sergei Sokolov, Yury Atroshchenko
    Sustainability.2022; 14(18): 11335.     CrossRef
  • Metagenomics analysis of probable transmission of determinants of antibiotic resistance from wastewater to the environment – A case study
    Wiktor Zieliński, Jakub Hubeny, Martyna Buta-Hubeny, Damian Rolbiecki, Monika Harnisz, Łukasz Paukszto, Ewa Korzeniewska
    Science of The Total Environment.2022; 827: 154354.     CrossRef
  • Contribution of plasmidome, metal resistome and integrases to the persistence of the antibiotic resistome in aquatic environments
    Andrea Di Cesare, Raffaella Sabatino, Ying Yang, Diego Brambilla, Pu Li, Diego Fontaneto, Ester M. Eckert, Gianluca Corno
    Environmental Pollution.2022; 297: 118774.     CrossRef
  • Characterization of antibiotic resistance genes in drinking water sources of the Douhe Reservoir, Tangshan, northern China: the correlation with bacterial communities and environmental factors
    Kunfeng Zhang, Yueting Fan, Sheng Chang, Qing Fu, Qi Zhang, Guang Yang, Xingbin Sun
    Environmental Sciences Europe.2022;[Epub]     CrossRef
  • Wastewater treatment plants as reservoirs and sources for antibiotic resistance genes: A review on occurrence, transmission and removal
    Yu-Xi Gao, Xing Li, Xiao-Yan Fan, Jun-Ru Zhao, Zhong-Xing Zhang
    Journal of Water Process Engineering.2022; 46: 102539.     CrossRef
  • Antibiotic and metal resistance of Stenotrophomonas maltophilia isolates from Eboling permafrost of the Tibetan Plateau
    Shuhong Zhang, Guangli Yang, Yali Jiang
    Environmental Science and Pollution Research.2022; 30(5): 11798.     CrossRef
  • Metagenomic analysis of microbial communities and antibiotic resistance genes in spoiled household chemicals
    Gang Zhou, Hong-bing Tao, Xia Wen, Ying-si Wang, Hong Peng, Hui-zhong Liu, Xiu-jiang Yang, Xiao-mo Huang, Qing-shan Shi, Xiao-bao Xie
    Chemosphere.2022; 291: 132766.     CrossRef
  • Municipal Wastewaters Carry Important Carbapenemase Genes Independent of Hospital Input and Can Mirror Clinical Resistance Patterns
    Adela Teban-Man, Edina Szekeres, Peiju Fang, Uli Klümper, Adriana Hegedus, Andreea Baricz, Thomas Ulrich Berendonk, Marcel Pârvu, Cristian Coman, Monica Adriana Garcia-Solache
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Profiling of emerging pathogens, antibiotic resistance genes and mobile genetic elements in different biological wastewater treatment plants
    Thobela Conco, Sheena Kumari, Oluyemi Olatunji Awolusi, Mushal Allam, Arshad Ismail, Thor A. Stenström, Faizal Bux
    Journal of Environmental Chemical Engineering.2022; 10(3): 107596.     CrossRef
  • Metagenomic and metatranscriptomic analyses reveal that biobed systems can enrich for antibiotic resistance and genetic mobility genes
    J. N. Russell, C. K. Yost
    Letters in Applied Microbiology.2022; 75(1): 145.     CrossRef
  • Fate of antibiotic resistant genes in wastewater environments and treatment strategies - A review
    Ranjith Kumar Manoharan, Fahmida Ishaque, Young-Ho Ahn
    Chemosphere.2022; 298: 134671.     CrossRef
  • Metagenomic Analysis of the Long-Term Synergistic Effects of Antibiotics on the Anaerobic Digestion of Cattle Manure
    Izabela Wolak, Małgorzata Czatzkowska, Monika Harnisz, Jan Paweł Jastrzębski, Łukasz Paukszto, Paulina Rusanowska, Ewa Felis, Ewa Korzeniewska
    Energies.2022; 15(5): 1920.     CrossRef
  • Metagenomic analysis reveals the response of microbial community in river sediment to accidental antimony contamination
    Xiuli Chen, Ji Wang, Chaoyi Pan, Lishi Feng, Qingwei Guo, Sili Chen, Shuguang Xie
    Science of The Total Environment.2022; 813: 152484.     CrossRef
  • Animal corpse degradation enriches antibiotic resistance genes but remains recalcitrant in drinking water microcosm
    Wanghong Su, Tongtong Li, Qiaoling Yu, Tianshu Feng, Jiawei Yang, Jiapeng Qu, Xiangzhen Li, Huan Li
    International Biodeterioration & Biodegradation.2022; 168: 105372.     CrossRef
  • Metagenomic insights into the spatiotemporal responses of antibiotic resistance genes and microbial communities in aquaculture sediments
    Ming Xu, Xing-hao Huang, Xiao-xiao Shen, Hao-qiang Chen, Chao Li, Guang-qiu Jin, Jia-shun Cao, Zhao-xia Xue
    Chemosphere.2022; 307: 135596.     CrossRef
  • Higher abundance of core antimicrobial resistant genes in effluent from wastewater treatment plants
    Shahbaz Raza, Hanseob Shin, Hor-Gil Hur, Tatsuya Unno
    Water Research.2022; 208: 117882.     CrossRef
  • Profiling of emerging contaminants and antibiotic resistance in sewage treatment plants: An Indian perspective
    Priyam Saxena, Isha Hiwrale, Sanchita Das, Varun Shukla, Lakshay Tyagi, Sukdeb Pal, Nishant Dafale, Rita Dhodapkar
    Journal of Hazardous Materials.2021; 408: 124877.     CrossRef
  • Investigation of the Prevalence of Antibiotic Resistance Genes According to the Wastewater Treatment Scale Using Metagenomic Analysis
    Keunje Yoo, Gihan Lee
    Antibiotics.2021; 10(2): 188.     CrossRef
  • A Review of Bacterial Antibiotic Resistance Genes and Their Removal Strategies from Wastewater
    Zainura Zainon Noor, Zainab Rabiu, Mohd. Helmi Mohd. Sani, Abdul Fatah A. Samad, Mohd. Farizal Ahmad Kamaroddin, María Florencia Perez, Julian Rafael Dib, Huma Fatima, Rajeshwari Sinha, Sunil Kumar Khare, Zainul Akmar Zakaria
    Current Pollution Reports.2021; 7(4): 494.     CrossRef
  • Analysis of heavy metal-related indices in the Eboling permafrost on the Tibetan Plateau
    Shuhong Zhang, Guangli Yang, Shugui Hou, Tingjun Zhang, Zhiguo Li, Wentao Du
    CATENA.2021; 196: 104907.     CrossRef
  • Next generation sequencing approaches to evaluate water and wastewater quality
    Emily Garner, Benjamin C. Davis, Erin Milligan, Matthew Forrest Blair, Ishi Keenum, Ayella Maile-Moskowitz, Jin Pan, Mariah Gnegy, Krista Liguori, Suraj Gupta, Aaron J. Prussin, Linsey C. Marr, Lenwood S. Heath, Peter J. Vikesland, Liqing Zhang, Amy Prude
    Water Research.2021; 194: 116907.     CrossRef
  • Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data
    Julian A. Paganini, Nienke L. Plantinga, Sergio Arredondo-Alonso, Rob J. L. Willems, Anita C. Schürch
    Microorganisms.2021; 9(8): 1613.     CrossRef
  • Effects on microbiomes and resistomes and the source-specific ecological risks of heavy metals in the sediments of an urban river
    Yuezhao Li, Haiyang Chen, Liuting Song, Jin Wu, Wenchao Sun, Yanguo Teng
    Journal of Hazardous Materials.2021; 409: 124472.     CrossRef
  • Shotgun metagenomic analysis reveals the prevalence of antibiotic resistance genes and mobile genetic elements in full scale hospital wastewater treatment plants
    Ranjith Kumar Manoharan, Sathiyaraj Srinivasan, Gnanendra Shanmugam, Young-Ho Ahn
    Journal of Environmental Management.2021; 296: 113270.     CrossRef
  • Wastewater Treatment and Reuse: a Review of its Applications and Health Implications
    Kavindra Kumar Kesari, Ramendra Soni, Qazi Mohammad Sajid Jamal, Pooja Tripathi, Jonathan A. Lal, Niraj Kumar Jha, Mohammed Haris Siddiqui, Pradeep Kumar, Vijay Tripathi, Janne Ruokolainen
    Water, Air, & Soil Pollution.2021;[Epub]     CrossRef
  • Metagenomic exploration of antibiotic resistome in treated wastewater effluents and their receiving water
    Shahbaz Raza, Hyejun Jo, Jungman Kim, Hanseob Shin, Hor-Gil Hur, Tatsuya Unno
    Science of The Total Environment.2021; 765: 142755.     CrossRef
  • Study of Heavy Metals and Microbial Communities in Contaminated Sediments Along an Urban Estuary
    Jun Yi, Linus Shing Him Lo, Hongbin Liu, Pei-Yuan Qian, Jinping Cheng
    Frontiers in Marine Science.2021;[Epub]     CrossRef
  • Acinetobacter sp. as the key player in diesel oil degrading community exposed to PAHs and heavy metals
    J. Czarny, J. Staninska-Pięta, A. Piotrowska-Cyplik, W. Juzwa, A. Wolniewicz, R. Marecik, Ł. Ławniczak, Ł. Chrzanowski
    Journal of Hazardous Materials.2020; 383: 121168.     CrossRef
  • Antibiotic Resistance in Recreational Waters: State of the Science
    Sharon P. Nappier, Krista Liguori, Audrey M. Ichida, Jill R. Stewart, Kaedra R. Jones
    International Journal of Environmental Research and Public Health.2020; 17(21): 8034.     CrossRef
  • Evidence of mutations conferring resistance to clarithromycin in wastewater and activated sludge
    Anna Gnida, Ewa Felis, Aleksandra Ziembińska-Buczyńska, Aneta Łuczkiewicz, Joanna Surmacz-Górska, Krystyna Olańczuk-Neyman
    3 Biotech.2020;[Epub]     CrossRef
  • Exploring the antibiotic resistome in activated sludge and anaerobic digestion sludge in an urban wastewater treatment plant via metagenomic analysis
    Keunje Yoo, Hyunji Yoo, Jangho Lee, Eun Joo Choi, Joonhong Park
    Journal of Microbiology.2020; 58(2): 123.     CrossRef
  • Specificity in the Susceptibilities of Escherichia coli, Pseudomonas aeruginosa and Staphylococcus aureus Clinical Isolates to Six Metal Antimicrobials
    Natalie Gugala, Dennis Vu, Michael D. Parkins, Raymond J. Turner
    Antibiotics.2019; 8(2): 51.     CrossRef
  • Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors
    Charmaine Ng, Boonfei Tan, Xiao-Tao Jiang, Xiaoqiong Gu, Hongjie Chen, Bradley William Schmitz, Laurence Haller, Francis Rathinam Charles, Tong Zhang, Karina Gin
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Distribution and co-occurrence of antibiotic and metal resistance genes in biofilms of an anthropogenically impacted stream
    Alescia A. Roberto, Jonathon B. Van Gray, Jean Engohang-Ndong, Laura G. Leff
    Science of The Total Environment.2019; 688: 437.     CrossRef
  • The correlation between antibiotic resistance gene abundance and microbial community resistance in pig farm wastewater and surrounding rivers
    Yiwen Yang, Zixiao Liu, Sicheng Xing, Xindi Liao
    Ecotoxicology and Environmental Safety.2019; 182: 109452.     CrossRef
  • Critical review of ARGs reduction behavior in various sludge and sewage treatment processes in wastewater treatment plants
    Gang Xue, Mingji Jiang, Hong Chen, Min Sun, Yunfan Liu, Xiang Li, Pin Gao
    Critical Reviews in Environmental Science and Technology.2019; 49(18): 1623.     CrossRef
  • Plastics in the marine environment are reservoirs for antibiotic and metal resistance genes
    Yuyi Yang, Guihua Liu, Wenjuan Song, Chen Ye, Hui Lin, Zan Li, Wenzhi Liu
    Environment International.2019; 123: 79.     CrossRef
  • Mercury/silver resistance genes and their association with antibiotic resistance genes and microbial community in a municipal wastewater treatment plant
    Li Yuan, Zheng-Hao Li, Ming-Qi Zhang, Wei Shao, Yang-Yang Fan, Guo-Ping Sheng
    Science of The Total Environment.2019; 657: 1014.     CrossRef
  • Metagenomic insights into the abundance and composition of resistance genes in aquatic environments: Influence of stratification and geography
    Yuyi Yang, Zan Li, Wenjuan Song, Linna Du, Chen Ye, Bo Zhao, Wenzhi Liu, Danli Deng, Yongtai Pan, Hui Lin, Xinhua Cao
    Environment International.2019; 127: 371.     CrossRef
  • Rhodoferax lacus sp. nov., isolated from a large freshwater lake
    Miri Park, Jaeho Song, Gi Gyun Nam, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(10): 3135.     CrossRef
  • Monitoring Antimicrobial Resistance Dissemination in Aquatic Systems
    Charmaine Ng, Karina Yew-Hoong Gin
    Water.2019; 11(1): 71.     CrossRef
  • Graphene oxide as a tool for antibiotic-resistant gene removal: a review
    Zuzana Bytesnikova, Lukas Richtera, Kristyna Smerkova, Vojtech Adam
    Environmental Science and Pollution Research.2019; 26(20): 20148.     CrossRef
  • Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
    Rahat Zaheer, Steven M. Lakin, Rodrigo Ortega Polo, Shaun R. Cook, Francis J. Larney, Paul S. Morley, Calvin W. Booker, Sherry J. Hannon, Gary Van Domselaar, Ron R. Read, Tim A. McAllister
    BMC Microbiology.2019;[Epub]     CrossRef
Characterization of Flavobacterium aquimarinum sp. nov., a halotolerant bacterium isolated from seawater
Sylvia Kristyanto , Tuan Manh Nguyen , Dhiraj Kumar Chaudhary , Sang-Seob Lee , Jaisoo Kim
J. Microbiol. 2018;56(5):317-323.   Published online May 2, 2018
DOI: https://doi.org/10.1007/s12275-018-7454-3
  • 351 View
  • 0 Download
  • 6 Crossref
AbstractAbstract PDF
A novel, aerobic, Gram-stain-negative, non-motile, non-spore forming, rod-shaped bacterium, designated strain Dol 15-39T, was isolated from a seawater sample near Geoje Island in the South Sea, Republic of Korea. The strain was found to be oxidase-negative and catalase-positive. The isolate was observed to grow at temperatures from 4 to 37°C, at salinities of up to 7%, and at pH levels from 6 to 9; moreover, it was not able to degrade starch, DNA, esculin, or tyrosine. Phylogenetic analysis based on 16S rRNA gene sequences showed that Dol 15-39T was most closely related to Flavobacterium jumunjinense HME7102T with a sequence similarity of 97.3%. However, the levels of DNA-DNA relatedness between Dol 15-39T and the most closely related species were much lower than 70%, confirming that they represented distinct genomic species. The genomic DNA G + C content of Dol 15-39T was calculated to be 32.6 mol%. MK-6 was the predominant respiratory quinine, while iso-C15:0 (25.0%), iso- C15:1 G (17.0%), and iso-C17:0 3-OH (10.4%) were the major cellular fatty acids. Phosphatidylethanolamine was identified as a major polar lipid, while various unidentified aminolipids and polar lipids were also detected. Based on polyphasic taxonomic data, Dol 15-39T represents a novel species of the genus Flavobacterium, for which the name F. aquimarinum sp. nov. is proposed. The type strain is accessible under the culture collection numbers (KEMB 9005-617T = JCM 31930T).

Citations

Citations to this article as recorded by  
  • Flavobacterium adhaerens sp. nov. and Flavobacterium maritimum sp. nov., two novel flavobacteria isolated from the Pearl River Estuary
    Zi-Qi Peng, Jia-Ling Li, Zi-Wen Yang, Pan-Deng Wang, Dan-Yuan Guo, Xiao-Qing Luo, Qi-Qi Deng, Qi Li, Ting-Ting She, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Flavobacterium frigoritolerans sp. nov. and Flavobacterium shii sp. nov., isolated from glaciers on the Tibetan Plateau
    Lei-Lei Yang, Hong-Can Liu, Yu-Hua Xin, Qing Liu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Identification of Flavobacterium algoritolerans sp. nov. and Flavobacterium yafengii sp. nov., two novel members of the genus Flavobacterium
    Ce-Ce Yin, Lei-Lei Yang, Yu-Hua Xin, Jian Ye, Qing Liu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Ten Novel Species Belonging to the Genus Flavobacterium, Isolated from Freshwater Environments: F. praedii sp. nov., F. marginilacus sp. nov., F. aestivum sp. nov., F. flavigenum sp. nov., F. luteolum sp. nov., F. gelatinilyticum sp. nov., F. aquiphilum s
    Hyunyoung Jo, Miri S. Park, Yeonjung Lim, Ilnam Kang, Jang-Cheon Cho
    Journal of Microbiology.2023; 61(5): 495.     CrossRef
  • Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
    Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
    Journal of Microbiology.2022; 60(9): 890.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(9): 2707.     CrossRef
Spirosoma luteolum sp. nov. isolated from water
Jae-Jin Lee , Su-Jin Park , Yeon-Hee Lee , Seung-Yeol Lee , Sangkyu Park , Young-Je Cho , Myung Kyum Kim , Leonid N. Ten , Hee-Young Jung
J. Microbiol. 2017;55(4):247-252.   Published online March 13, 2017
DOI: https://doi.org/10.1007/s12275-017-6455-y
  • 397 View
  • 0 Download
  • 18 Crossref
AbstractAbstract PDF
A novel Gram-negative and rod-shaped bacterial strain, de-signated as 16F6ET, was isolated from a water sample. Cells were yellowish in color and catalase- and oxidase-positive. The strain grew at 10–37°C (optimum at 25°C) but not at 4 and 42°C, and pH 5–7 (optimum at pH 7). It showed mod-erate resistance to gamma-ray irradiation. Comparative phy-logenetic analysis showed that strain 16F6ET belonged to the family Cytophagaceae of the class Cytophagia. Furthermore, this isolate showed relatively low 16S rRNA gene sequence similarities (90.7–93.1%) to the members of the genus Spiro-soma. The major fatty acids were summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, C16:0 N alcohol, and C16:0. The polar lipid profile indicated presence of phosphatidylethanolamine, unknown aminophospholipids, an unknown amino lipid, unknown phospholipids, and unknown polar lipids. The pre-dominant isoprenoid quinone was MK-7. The genomic DNA G+C content of strain 16F6ET was 56.5 mol%. Phenotypic, phylogenetic, and chemotaxonomic properties indicated that isolate 16F6ET represents a novel species within the genus Spirosoma, for which the name Spirosoma luteolum sp. nov. is proposed. The type strain is 16F6ET (=KCTC 52199T =JCM 31411T).

Citations

Citations to this article as recorded by  
  • Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
    Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
    Scientific Reports.2023;[Epub]     CrossRef
  • Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
    Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Theoretical design of new organic compounds based on diketopyrrolopyrrole and phenyl for organic bulk heterojunction solar cell applications: DFT and TD-DFT study
    M. Raftani, T. Abram, A. Azaid, R. Kacimi, M.N. Bennani, M. Bouachrine
    Materials Today: Proceedings.2021; 45: 7334.     CrossRef
  • Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
    Guillaume Tahon, Liesbeth Lebbe, Anne Willems
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Spirosoma terrae sp. nov., Isolated from Soil from Jeju Island, Korea
    Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, In-Kyu Kang, Myung Kyum Kim, Hee-Young Jung
    Current Microbiology.2018; 75(4): 492.     CrossRef
  • Spirosoma harenae sp. nov., a Bacterium Isolated from a Sandy Beach
    Leonid N. Ten, Nabil Elderiny, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, Myung Kyum Kim, Hee-Young Jung
    Current Microbiology.2018; 75(2): 179.     CrossRef
  • Spirosoma jeollabukense sp. nov., isolated from soil
    Weilan Li, Leonid N. Ten, Seung-Yeol Lee, Dong Hoon Lee, Hee-Young Jung
    Archives of Microbiology.2018; 200(3): 431.     CrossRef
  • Spirosoma humi sp. nov., Isolated from Soil in South Korea
    Li Weilan, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Leonid N. Ten, Hee-Young Jung
    Current Microbiology.2018; 75(3): 328.     CrossRef
  • Spirosoma horti sp. nov., isolated from apple orchard soil
    Weilan Li, Leonid N. Ten, Seung-Yeol Lee, In-Kyu Kang, Hee-Young Jung
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(3): 930.     CrossRef
  • Spirosoma agri sp. nov., Isolated from Apple Orchard Soil
    Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
    Current Microbiology.2018; 75(6): 694.     CrossRef
  • Spirosoma pomorum sp. nov., isolated from apple orchard soil
    Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
    Journal of Microbiology.2018; 56(2): 90.     CrossRef
  • Spirosoma metallilatum sp. nov., isolated from an automotive air conditioning system
    Dong-Uk Kim, Hyosun Lee, Suyeon Lee, Sooyeon Park, Jung-Hoon Yoon, Jong-Ok Ka
    International Journal of Systematic and Evolutionary Microbiology .2018; 68(2): 523.     CrossRef
  • Spirosoma migulaei sp. nov., isolated from soil
    Joseph Okiria, Leonid N. Ten, Su-Jin Park, Seung-Yeol Lee, Dong Hoon Lee, In-Kyu Kang, Dae Sung Lee, Hee-Young Jung
    Journal of Microbiology.2017; 55(12): 927.     CrossRef
  • Spirosoma litoris sp. nov., a bacterium isolated from beach soil
    Joseph Okiria, Leonid N. Ten, Jae-Jin Lee, Seung-Yeol Lee, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
    International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 4986.     CrossRef
  • Spirosoma flavus sp. nov., a novel bacterium from soil of Jeju Island
    Nabil Elderiny, Seung-Yeol Lee, Sangkyu Park, In-Kyu Kang, Myung Kyum Kim, Dae Sung Lee, Leonid N. Ten, Hee-Young Jung
    Journal of Microbiology.2017; 55(11): 850.     CrossRef
  • Spirosoma koreense sp. nov., a species of the family Cytophagaceae isolated from beach soil
    Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, In-Kyu Kang, Dae Sung Lee, Hee-Young Jung
    International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 5198.     CrossRef
  • Spirosoma daeguensis sp. nov., isolated from beach soil
    Nabil Elderiny, Leonid N. Ten, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
    Journal of Microbiology.2017; 55(9): 678.     CrossRef
  • List of novel names and novel combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2017; 67(7): 2075.     CrossRef
Arcobacter acticola sp. nov., isolated from seawater on the East Sea in South Korea
Sooyeon Park , Yong-Taek Jung , Sona Kim , Jung-Hoon Yoon
J. Microbiol. 2016;54(10):655-659.   Published online September 30, 2016
DOI: https://doi.org/10.1007/s12275-016-6268-4
  • 436 View
  • 0 Download
  • 26 Crossref
AbstractAbstract PDF
A Gram-stain-negative, facultative aerobic, non-flagellated, and rod-shaped bacterium, designated AR-13T, was isolated from a seawater on the East Sea in South Korea, and subjected to a polyphasic taxonomic study. Strain AR-13T grew optimally at 30°C, at pH 7.0–8.0 and in the presence of 0–0.5% (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that strain AR-13T fell within the clade comprising the type strains of Arcobacter species, clustering coherently with the type strain of Arcobacter venerupis. Strain AR-13T exhibited 16S rRNA gene sequence similarity values of 98.1% to the type strain of A. venerupis and of 93.2–96.9% to the type strains of the other Arcobacter species. Strain AR-13T contained MK-6 as the only menaquinone and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C16:0, C18:1 ω7c, and summed feature 2 (iso-C16:1 I and/or C14:0 3-OH) as the major fatty acids. The major polar lipids detected in strain AR-13T were phosphatidylethanolamine, phosphatidylglycerol, and one unidentified aminophospholipid. The DNA G+C content was 28.3 mol% and its mean DNA-DNA relatedness value with the type strain of A. venerupis was 21%. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain AR-13T is separated from recognized Arcobacter species. On the basis of the data presented, strain AR-13T is considered to represent a novel species of the genus Arcobacter, for which the name Arcobacter acticola sp. nov. is proposed. The type strain is AR-13T (=KCTC 52212T =NBRC 112272T).

Citations

Citations to this article as recorded by  
  • Authigenic carbonate and native sulfur formation in Messinian (upper Miocene) marine sediments: Sedimentological, petrographical and geochemical constraints
    M. Natalicchio, D. Birgel, S. Giunti, L. Guibourdenche, L. Pellegrino, G. Aloisi, J. Peckmann, F. Dela Pierre
    Marine and Petroleum Geology.2024; 165: 106889.     CrossRef
  • Arcobacter roscoffensis sp. nov., a marine bacterium isolated from coastal seawater
    Javier Pascual, Cendrella Lepleux, Anika Methner, Cathrin Spröer, Boyke Bunk, Jörg Overmann
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Widespread Multidrug Resistance of Arcobacter butzleri Isolated from Clinical and Food Sources in Central Italy
    Claudia Gabucci, Giulia Baldelli, Giulia Amagliani, Giuditta Fiorella Schiavano, David Savelli, Ilaria Russo, Stefania Di Lullo, Giuliana Blasi, Maira Napoleoni, Francesca Leoni, Sara Primavilla, Francesca Romana Massacci, Giuliano Garofolo, Annalisa Petr
    Antibiotics.2023; 12(8): 1292.     CrossRef
  • A Review on the Prevalence of Arcobacter in Aquatic Environments
    Rajani Ghaju Shrestha, Yasuhiro Tanaka, Eiji Haramoto
    Water.2022; 14(8): 1266.     CrossRef
  • RETRACTED: Improving tilapia (Oreochromis mossambicus) resistance to streptococcal disease by improving the gut biome through administration of the microorganisms Bacillus subtilis and Enterococcus faecalis
    Xianhui Pan, Qian Liu, Luting Wen, Yin Huang, Huawei Ma, Yong Lin, Zhong Chen, Junqi Qin, Xuesong Du
    Aquaculture Reports.2021; 20: 100636.     CrossRef
  • A Systematic Analysis of Research on Arcobacter: Public Health Implications from a Food–Environment Interphase Perspective
    Chidozie Declan Iwu, Temitope Cyrus Ekundayo, Anthony Ifeanyin Okoh
    Foods.2021; 10(7): 1673.     CrossRef
  • Spatial and temporal axes impact ecology of the gut microbiome in juvenile European lobster (Homarus gammarus)
    Corey C Holt, Mark van der Giezen, Carly L Daniels, Grant D Stentiford, David Bass
    The ISME Journal.2020; 14(2): 531.     CrossRef
  • Aliarcobacter vitoriensis sp. nov., isolated from carrot and urban wastewater
    Rodrigo Alonso, Cecilia Girbau, Irati Martinez-Malaxetxebarria, Alba Pérez-Cataluña, Nuria Salas-Massó, Jesús L. Romalde, María José Figueras, Aurora Fernandez-Astorga
    Systematic and Applied Microbiology.2020; 43(4): 126091.     CrossRef
  • Complete Genome Sequencing of FourArcobacterSpecies Reveals a Diverse Suite of Mobile Elements
    William G Miller, Emma Yee, James L Bono, Howard Ochman
    Genome Biology and Evolution.2020; 12(2): 3850.     CrossRef
  • Diversity, enumeration, and isolation of Arcobacter spp. in the giant abalone, Haliotis gigantea
    Yukino Mizutani, Shunpei Iehata, Tetsushi Mori, Ryota Oh, Satoshi Fukuzaki, Reiji Tanaka
    MicrobiologyOpen.2019;[Epub]     CrossRef
  • A meta-analytic perspective on Arcobacter spp. antibiotic resistance
    Susana Ferreira, Ângelo Luís, Mónica Oleastro, Luísa Pereira, Fernanda C. Domingues
    Journal of Global Antimicrobial Resistance.2019; 16: 130.     CrossRef
  • Genomic Characterization of Arcobacter butzleri Isolated From Shellfish: Novel Insight Into Antibiotic Resistance and Virulence Determinants
    Francesca Fanelli, Angela Di Pinto, Anna Mottola, Giuseppina Mule, Daniele Chieffi, Federico Baruzzi, Giuseppina Tantillo, Vincenzina Fusco
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(1): 5.     CrossRef
  • Arcobacter lacus sp. nov. and Arcobacter caeni sp. nov., two novel species isolated from reclaimed water
    Alba Pérez-Cataluña, Nuria Salas-Massó, María José Figueras
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(11): 3326.     CrossRef
  • A Polyphasic and Taxogenomic Evaluation Uncovers Arcobacter cryaerophilus as a Species Complex That Embraces Four Genomovars
    Alba Pérez-Cataluña, Luis Collado, Oscar Salgado, Violeta Lefiñanco, María J. Figueras
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Complete Genome Sequence of the Arcobacter mytili Type Strain LMG 24559
    William G. Miller, Emma Yee, James L. Bono, Jason Stajich
    Microbiology Resource Announcements.2018;[Epub]     CrossRef
  • Revisiting the Taxonomy of the Genus Arcobacter: Getting Order From the Chaos
    Alba Pérez-Cataluña, Nuria Salas-Massó, Ana L. Diéguez, Sabela Balboa, Alberto Lema, Jesús L. Romalde, Maria J. Figueras
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Arcobacter spp. at retail food from Portugal: Prevalence, genotyping and antibiotics resistance
    Sofia Vicente-Martins, Mónica Oleastro, Fernanda C. Domingues, Susana Ferreira
    Food Control.2018; 85: 107.     CrossRef
  • Complete Genome Sequence of the Arcobacter marinus Type Strain JCM 15502
    William G. Miller, Emma Yee, Steven Huynh, Craig T. Parker, David A. Baltrus
    Microbiology Resource Announcements.2018;[Epub]     CrossRef
  • Arcobacter canalis sp. nov., isolated from a water canal contaminated with urban sewage
    Alba Pérez-Cataluña, Nuria Salas-Massó, María José Figueras
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(4): 1258.     CrossRef
  • Comparative isolation and genetic diversity ofArcobactersp. from fish and the coastal environment
    S. Rathlavath, S. Kumar, B.B. Nayak
    Letters in Applied Microbiology.2017; 65(1): 42.     CrossRef
  • Arcobacter: an emerging food-borne zoonotic pathogen, its public health concerns and advances in diagnosis and control – a comprehensive review
    Thadiyam Puram Ramees, Kuldeep Dhama, Kumaragurubaran Karthik, Ramswaroop Singh Rathore, Ashok Kumar, Mani Saminathan, Ruchi Tiwari, Yashpal Singh Malik, Raj Kumar Singh
    Veterinary Quarterly.2017; 37(1): 136.     CrossRef
  • Occurrence, genetic diversity and antibiotic resistance of Arcobacter sp. in a dairy plant
    S. Ferreira, M. Oleastro, F.C. Domingues
    Journal of Applied Microbiology.2017; 123(4): 1019.     CrossRef
  • Arcobacter haliotis sp. nov., isolated from abalone species Haliotis gigantea
    Reiji Tanaka, Ilse Cleenwerck, Yukino Mizutani, Shunpei Iehata, Peter Bossier, Peter Vandamme
    International Journal of Systematic and Evolutionary Microbiology.2017; 67(8): 3050.     CrossRef
  • Occurrence of putative virulence genes onArcobacter butzleriisolated from three different environmental sites throughout the dairy chain
    S. Piva, G.R. Gariano, P. Bonilauri, F. Giacometti, L. Decastelli, D. Florio, E. Massella, A. Serraino
    Journal of Applied Microbiology.2017; 122(4): 1071.     CrossRef
  • Antimicrobial susceptibility, virulence potential and sequence types associated with Arcobacter strains recovered from human faeces
    Alba Pérez-Cataluña, Josepa Tapiol, Clara Benavent, Carolina Sarvisé, Frederic Gómez, Bruno Martínez, Margarida Terron-Puig, Gemma Recio, Angels Vilanova, Isabel Pujol, Frederic Ballester, Antonio Rezusta, María Jose Figueras
    Journal of Medical Microbiology .2017; 66(12): 1736.     CrossRef
Gamete-associated flavobacteria of the oviparous Chinook salmon (Oncorhynchus tshawytscha) in lakes Michigan and Huron, North America
Thomas P. Loch , Mohamed Faisal
J. Microbiol. 2016;54(7):477-486.   Published online June 28, 2016
DOI: https://doi.org/10.1007/s12275-016-5629-3
  • 384 View
  • 0 Download
  • 9 Crossref
AbstractAbstract PDF
Flavobacterial diseases, caused by multiple members of the Family Flavobacteriaceae, elicit serious losses in wild and farmed fish around the world. Flavobacteria are known to be transmitted horizontally; however, vertical transmission has been suspected but proven only for one fish-pathogenic flavobacterial species (e.g., Flavobacterium psychrophilum). Herein, we report on the isolation and molecular identification of multiple Flavobacterium and Chryseobacterium taxa from the ovarian fluid and eggs of feral Great Lakes Chinook salmon (Oncorhynchus tshawytscha). Identified egg- and ovarian fluid-associated flavobacteria were either well-known flavobacterial fish pathogens (e.g., F. psychrophilum and F. columnare), most similar to emerging fish-associated flavobacteria (e.g., F. spartansii, F. tructae, F. piscis, C. piscium, C. scophthalmum), or were distinct from all other described Chryseobacterium and Flavobacterium spp., as determined by phylogenetic analyses using neighbor-joining, Bayesian, and Maximum Likelihood methodologies. The gamete-associated flavobacteria fell into three groups (e.g., those that were recovered from the ovarian fluid but not eggs; those that were recovered from the ovarian fluid and eggs; and those that were recovered from eggs but not ovarian fluid), a portion of which were recovered from eggs that were surface disinfected with iodophor at the commonly used dose and duration for egg disinfection. Some gamete-associated flavobacteria were also found in renal, splenic, and neurological tissues. Systemic polymicrobial infections comprised of F. psychrophilum and F. columnare were also detected at nearly an 11% prevalence. This study highlights the potential role that sexual products of female Great Lakes Chinook salmon may play in the transmission of fish-associated flavobacteria.

Citations

Citations to this article as recorded by  
  • Atypical flavobacteria recovered from diseased fish in the Western United States
    Taylor I. Heckman, Zeinab Yazdi, Eric K. Pomaranski, Fernanda de Alexandre Sebastião, Kaveramma Mukkatira, Brent M. Vuglar, Kenneth D. Cain, Thomas P. Loch, Esteban Soto
    Frontiers in Cellular and Infection Microbiology.2023;[Epub]     CrossRef
  • Ultraviolet light differentially reduces viability of fish- and fish farm-associated flavobacteria (families Flavobacteriaceae and Weeksellaceae)
    Christopher Knupp, Mohamed Faisal, Travis O. Brenden, Esteban Soto, Benjamin R. LaFrentz, Matt J. Griffin, Gregory D. Wiens, Wade Cavender, Danielle Van Vliet, Thomas P. Loch
    North American Journal of Aquaculture.2023; 85(4): 311.     CrossRef
  • Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
    Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
    Journal of Microbiology.2022; 60(9): 890.     CrossRef
  • Interactions between Rainbow Trout Eyed Eggs and Flavobacterium spp. Using a Bath Challenge Model: Preliminary Evaluation of Bacteriophages as Pathogen Control Agents
    Valentina L. Donati, Inger Dalsgaard, Anniina Runtuvuori-Salmela, Heidi Kunttu, Johanna Jørgensen, Daniel Castillo, Lotta-Riina Sundberg, Mathias Middelboe, Lone Madsen
    Microorganisms.2021; 9(5): 971.     CrossRef
  • Water hardness does not influence iodine-induced mortality of rainbow trout eyed eggs
    J. Rosburg Alex, Enright Cameron, M. Voorhees Jill, E. Barnes Michael
    International Journal of Fisheries and Aquaculture.2021; 13(1): 40.     CrossRef
  • Virulence variations of Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss) eyed eggs and alevin
    Jason P. Evenhuis, Ryan Lipscomb, Clayton Birkett
    Journal of Fish Diseases.2021; 44(5): 533.     CrossRef
  • Detection and identification of a fish pathogen Flavobacterium columnare using specific monoclonal antibodies
    Nantawut Ponpukdee, Pradit Wangman, Channarong Rodkhum, Chalinan Pengsuk, Parin Chaivisuthangkura, Paisarn Sithigorngul, Siwaporn Longyant
    Aquaculture.2021; 545: 737231.     CrossRef
  • Flavobacteria colonizing the early life stages of hatchery‐incubated Chinook salmon Oncorhynchus tshawytscha (Walbaum 1792) are markedly diverse
    T P Loch, M Faisal
    Journal of Fish Diseases.2018; 41(5): 829.     CrossRef
  • Testing a text mining tool for emerging risk identification
    Niels B. Lucas Luijckx, Fred J. van de Brug, Winfried R. Leeman, Jos M.B.M. van der Vossen, Hilde J. Cnossen
    EFSA Supporting Publications.2016;[Epub]     CrossRef
Research Support, Non-U.S. Gov'ts
Bacterial Diversity and Composition of an Alkaline Uranium Mine Tailings-Water Interface
Nurul H. Khan , Viorica F. Bondici , Prabhakara G. Medihala , John R. Lawrence , Gideon M. Wolfaardt , Jeff Warner , Darren R. Korber
J. Microbiol. 2013;51(5):558-569.   Published online September 14, 2013
DOI: https://doi.org/10.1007/s12275-013-3075-z
  • 400 View
  • 1 Download
  • 12 Crossref
AbstractAbstract PDF
The microbial diversity and biogeochemical potential associated with a northern Saskatchewan uranium mine watertailings interface was examined using culture-dependent and -independent techniques. Morphologically-distinct colonies from uranium mine water-tailings and a reference lake (MC) obtained using selective and non-selective media were selected for 16S rRNA gene sequencing and identification, revealing that culturable organisms from the uranium tailings interface were dominated by Firmicutes and Betaproteobacteria; whereas, MC organisms mainly consisted of Bacteroidetes and Gammaproteobacteria. Ion Torrent (IT) 16S rRNA metagenomic analysis carried out on extracted DNA from tailings and MC interfaces demonstrated the dominance of Firmicutes in both of the systems. Overall, the tailings-water interface environment harbored a distinct bacterial community relative to the MC, reflective of the ambient conditions (i.e., total dissolved solids, pH, salinity, conductivity, heavy metals) dominating the uranium tailings system. Significant correlations among the physicochemical data and the major bacterial groups present in the tailings and MC were also observed. Presence of sulfate reducing bacteria demonstrated by culture-dependent analyses and the dominance of Desulfosporosinus spp. indicated by Ion Torrent analyses within the tailings-water interface suggests the existence of anaerobic microenvironments along with the potential for reductive metabolic processes.

Citations

Citations to this article as recorded by  
  • Exploring functional microbiota for uranium sequestration in Zoige uranium mine soil
    Xiang Wang, Li Zhao, Xu Zhang, Yanxia Wei, Aixia Lu, Jian Zhou, Guiqiang He, Philips O Akinwole, Xugang Dang
    Microbiology Spectrum.2025;[Epub]     CrossRef
  • Compost, plants and endophytes versus metal contamination: choice of a restoration strategy steers the microbiome in polymetallic mine waste
    Martina Kracmarova-Farren, Jakub Papik, Ondrej Uhlik, John Freeman, Andrea Foster, Mary-Cathrine Leewis, Courtney Creamer
    Environmental Microbiome.2023;[Epub]     CrossRef
  • Concurrent reductive decontamination of chromium (VI) and uranium (VI) in groundwater by Fe(0)-based autotrophic bioprocess
    Jianping Lu, Rongyue Geng, Han Zhang, Zhen Yu, Tao Chen, Baogang Zhang
    Journal of Hazardous Materials.2023; 452: 131222.     CrossRef
  • Impact of anoxic conditions, uranium(VI) and organic phosphate substrate on the biogeochemical potential of the indigenous bacterial community of bentonite
    Cristina Povedano-Priego, Fadwa Jroundi, Margarita Lopez-Fernandez, Mar Morales-Hidalgo, Inés Martin-Sánchez, F. Javier Huertas, Mark Dopson, Mohamed L. Merroun
    Applied Clay Science.2022; 216: 106331.     CrossRef
  • The remediation of uranium-contaminated groundwater via bioreduction coupled to biomineralization with different pH and electron donors
    Guohua Wang, Ying Liu, Jiali Wang, Jinjing Xiang, Taotao Zeng, Shiyou Li, Jian Song, Zhiyue Zhang, Jinxiang Liu
    Environmental Science and Pollution Research.2022; 30(9): 23096.     CrossRef
  • Uranium sequestration abilities of Bacillus bacterium isolated from an alkaline mining region
    Uday Kumar Banala, Nilamadhab Prasad Indradyumna Das, Subba Rao Toleti
    Journal of Hazardous Materials.2021; 411: 125053.     CrossRef
  • Alkaliphilic bacteria retrieved from uranium mining effluent: Characterization, U sequestration and remediation potential
    Uday Kumar Banala, Nilamadhab Prasad Indradyumna Das, Ranjib Kumar Padhi, Subba Rao Toleti
    Environmental Technology & Innovation.2021; 24: 101893.     CrossRef
  • Geochemistry of uranium mill tailings in the Athabasca Basin, Saskatchewan, Canada: A review
    Jared Robertson, M. Jim Hendry, T. Kotzer, Kebbi A. Hughes
    Critical Reviews in Environmental Science and Technology.2019; 49(14): 1237.     CrossRef
  • In vitro biomedicinal properties of Pyrrolidine-2,4-Dione derived from a novel actinobacterium Streptomyces rochei, a green approach
    Mookkan Bodhaguru, Prakash Santhiyagu, Mariselvam Lakshmanan, Ramasubburayan Ramasamy, Ahila Natarajan Kumari, Kannapiran Ethiraj, Palavesam Arunachalam, Immanuel Grasian
    Biocatalysis and Agricultural Biotechnology.2019; 20: 101244.     CrossRef
  • Nutrients Availability Shapes Fungal Community Composition and Diversity in the Rare Earth Mine Tailings of Southern Jiangxi, China
    Genhe He, Xiaodong Wang, Xu Liu, Xiaoyu Xiao, Shoucheng Huang, Jichun Wu
    Russian Journal of Ecology.2018; 49(6): 524.     CrossRef
  • Biogeochemical Importance of the Bacterial Community in Uranium Waste Deposited at Key Lake, Northern Saskatchewan
    Viorica F. Bondici, George D. W. Swerhone, James J. Dynes, John R. Lawrence, Gideon M. Wolfaardt, Jeff Warner, Darren R. Korber
    Geomicrobiology Journal.2016; 33(9): 807.     CrossRef
  • Biogeochemical activity of microbial biofilms in the water column overlying uranium mine tailings
    V.F. Bondici, N.H. Khan, G.D.W. Swerhone, J.J. Dynes, J.R. Lawrence, E. Yergeau, G.M. Wolfaardt, J. Warner, D.R. Korber
    Journal of Applied Microbiology.2014; 117(4): 1079.     CrossRef
Solid State Production of Polygalacturonase and Xylanase by Trichoderma Species Using Cantaloupe and Watermelon Rinds
Saleh A. Mohamed , Abdulrahman L. Al-Malki , Jalaluddin A. Khan , Saleh A. Kabli , Saleh M. Al-Garni
J. Microbiol. 2013;51(5):605-611.   Published online September 14, 2013
DOI: https://doi.org/10.1007/s12275-013-3016-x
  • 338 View
  • 0 Download
  • 33 Crossref
AbstractAbstract PDF
Different solid state fermentation (SSF) sources were tested such as cantaloupe and watermelon rinds, orange and banana peels, for the production of polygalacturonase (PG) and xylanase (Xyl) by Trichoderma harzianum and Trichoderma virens. The maximum production of both PG and Xyl were obtained by T. harzianum and T. virnes grown on cantaloupe and watermelon rinds, respectively. Time course, moisture content, temperature, pH, supplementation with carbon and nitrogen sources were optimized to achieve the maximum production of both PG and Xyl of T. harzianum and T. virens using cantaloupe and watermelon rinds, respectively. The maximum production of PG and Xyl of T. harzianum and T. virens was recorded at 4–5 days of incubation, 50–66% moisture, temperature 28–35°C and pH 6–7. The influence of supplementary carbon and nitrogen sources was studied. For T. harzianum, lactose enhanced PG activity from 87 to 120 units/g solid, where starch and maltose enhanced Xyl activity from 40 to 55–60 units/g solid for T. virnes. Among the nitrogen sources, ammonium sulphate, ammonium nitrate, yeast extract and urea increased PG activity from 90 to 110–113 units/g solid for T. harzianum. Similarly, ammonium chloride, ammonium sulphate and yeast extract increased Xyl activity from 45 to 55–70 units/g solid for T. virens.

Citations

Citations to this article as recorded by  
  • Investigation of the solid-state fermentation of Astragalus membranaceus residue with Cordyceps militaris: effects on phenolic profile and in vitro neuroprotective activity
    Qiaona Wang, Lu Li, Liyun Hu, Ying Cao, Yutong Cao, Jiayi Gao, Honglin Zhang, Feng Zhou, Yulong Wu, Shengjie Li, Renlei Wang
    Food Chemistry.2025; 493: 145846.     CrossRef
  • Solid-state fermentation of distillers grains with Aspergillus pachycristatus for echinocandin B biosynthesis
    Jiaxin Tang, Weibing Zhang, Jing Xu, Luyan Sun, Yaqi Dang, Haoyang Li, Liyan Yu, Jing Su, Ting Xue, Rui Guo, Jun Xie, Lei Wang
    Bioresource Technology.2025; 425: 132334.     CrossRef
  • Fermentation and valorization of watermelon (Citrullus lanatus) rind wastes into livestock feed using Aspergillus niger and Mucor sp.
    Ephraim Ekloh, Levi Yafetto
    Scientific African.2024; 23: e02035.     CrossRef
  • Investigating process parameters to enhance (hemi)cellulolytic enzymes activity produced by Trichoderma reesei RUT-C30 using deoiled oil palm mesocarp fiber in solid-state fermentation
    Ali Abdulkareem Al-Qassab, Mohd Rafein Zakaria, Robiah Yunus, Mohamad Amran Mohd Salleh, Mohd Noriznan Mokhtar
    International Journal of Biological Macromolecules.2024; 276: 134030.     CrossRef
  • Detergent-stable amylase production by Paenibacillus lactis strain OPSA3 isolated from soil; optimization by response surface methodology
    Emmanuel Tobechukwu Ugwuoji, Tochukwu Nwamaka T. Nwagu, Lewis Iheanacho Ezeogu
    Biotechnology Reports.2023; 39: e00808.     CrossRef
  • Release characteristic of bound polyphenols from tea residues insoluble dietary fiber by mixed solid-state fermentation with cellulose degrading strains CZ-6 and CZ-7
    Jingyu Si, Jiayan Xie, Bing Zheng, Jianhua Xie, Yi Chen, Chaoran Yang, Nan Sun, Yuting Wang, Xiaobo Hu, Qiang Yu
    Food Research International.2023; 173: 113319.     CrossRef
  • Antioxidant-polyphenols of saw palmetto seeds: statistical optimized production and improved functional properties under solid-state fermentation by Trichoderma reesei
    Azza M. Abdel-Aty, Amal Z. Barakat, Roqaya I. Bassuiny, Saleh A. Mohamed
    Journal of Food Measurement and Characterization.2023; 17(2): 1132.     CrossRef
  • Valorization of banana peel into α-amylase using one factor at a time (OFAT) assisted artificial neural network (ANN) and its partial purification, characterization, and kinetics study
    Shyama Prasad Saha, Shubham Ghosh, Deepika Mazumdar, Sarbobhouma Ghosh, Dipanwita Ghosh, Mahima Misti Sarkar, Swarnendu Roy
    Food Bioscience.2023; 53: 102533.     CrossRef
  • Enhancement of polyphenolics and antioxidant activities of jambolan (Syzygium cumini) fruit pulp using solid state fermentation by Aspergillus niger and A. flavus
    Murugan Rajan, Julianna Ksarla Santana Andrade, Romy Gleyse Chagas Barros, Tamna Joanan Farias Lima Guedes, Narendra Narain
    Biocatalysis and Agricultural Biotechnology.2023; 47: 102589.     CrossRef
  • Exploration of the Potential Application of Banana Peel for Its Effective Valorization: A Review
    Shreya Bishnoi, Shweta Sharma, Himani Agrawal
    Indian Journal of Microbiology.2023; 63(4): 398.     CrossRef
  • Bioprocessing of Horticultural Wastes by Solid-State Fermentation into Value-Added/Innovative Bioproducts: A Review
    Aly Farag El Sheikha, Ramesh C. Ray
    Food Reviews International.2023; 39(6): 3009.     CrossRef
  • The synergy of dark septate endophytes and organic residue on Isatis indigotica growth and active ingredients accumulation under drought stress
    Wanyun Li, Jiaojie Yao, Chao He, Yanfang Ren, Lili Zhao, Xueli He
    Industrial Crops and Products.2023; 203: 117147.     CrossRef
  • Xylanase enhanced second-generation bioethanol production through simultaneous saccharification and fermentation
    Mohammed A. Al-Ahdal, Ehab M. M. Ali, Othman A. Baothman, Abdulbasit I. I. Al-sieni, Hasan A. Al-Talhi
    Biofuels.2023; 14(10): 1009.     CrossRef
  • Degradation potential of different lignocellulosic residues by Trichoderma longibrachiatum and Trichoderma afroharzianum under solid state fermentation
    Wanyun Li, Lili Zhao, Xueli He
    Process Biochemistry.2022; 112: 6.     CrossRef
  • Biotechnology approach using watermelon rind for optimization of α-amylase enzyme production from Trichoderma virens using response surface methodology under solid-state fermentation
    Heidi M. Abdel-Mageed, Amal Z. Barakat, Roqaya I. Bassuiny, Alshaimaa M. Elsayed, Hala A. Salah, Azza M. Abdel-Aty, Saleh A. Mohamed
    Folia Microbiologica.2022; 67(2): 253.     CrossRef
  • Exploitation of cantaloupe peels for bacterial cellulose production and functionalization with green synthesized Copper oxide nanoparticles for diverse biological applications
    Ahmed K. Saleh, Hamada El-Gendi, Esmail M. El-Fakharany, Medhat E. Owda, Mohamed A. Awad, Elbadawy A. Kamoun
    Scientific Reports.2022;[Epub]     CrossRef
  • Improved production of antioxidant-phenolic compounds and certain fungal phenolic-associated enzymes under solid-state fermentation of chia seeds with Trichoderma reesei: response surface methodology-based optimization
    Azza M. Abdel-Aty, Amal Z. Barakat, Roqaya I. Bassuiny, Saleh A. Mohamed
    Journal of Food Measurement and Characterization.2022; 16(5): 3488.     CrossRef
  • Biochemical properties of cellulolytic and xylanolytic enzymes from Sporotrichum thermophile and their utility in bioethanol production using rice straw
    Bijender Singh, Anju Bala, Anu, Alokika, Vinod Kumar, Davender Singh
    Preparative Biochemistry & Biotechnology.2022; 52(2): 197.     CrossRef
  • Preparation of a Calcium Alginate-Coated Polypyrrole/Silver Nanocomposite for Site-Specific Immobilization of Polygalacturonase with High Reusability and Enhanced Stability
    Yaaser Q. Almulaiky, Sami A. Al-Harbi
    Catalysis Letters.2022; 152(1): 28.     CrossRef
  • Solid-state fermentation for enhancing the nutraceutical content of agrifood by-products: Recent advances and its industrial feasibility
    Luis O. Cano y Postigo, Daniel A. Jacobo-Velázquez, Daniel Guajardo-Flores, Luis Eduardo Garcia Amezquita, Tomás García-Cayuela
    Food Bioscience.2021; 41: 100926.     CrossRef
  • Eco-Green Conversion of Watermelon Peels to Single Cell Oils Using a Unique Oleaginous Fungus: Lichtheimia corymbifera AH13
    Amr Hosny Hashem, Mohamed Sayed Hasanin, Ahmed Mohamed Aly Khalil, Waleed Bakry Suleiman
    Waste and Biomass Valorization.2020; 11(11): 5721.     CrossRef
  • Immobilization of pectinase on Zr‐treated pumice for fruit juice industry
    Selmihan Sahin, Ismail Ozmen
    Journal of Food Processing and Preservation.2020;[Epub]     CrossRef
  • Phenolic Content and Antioxidant Activity of Extracts of 12 Melon (Cucumis melo) Peel Powders Prepared from Commercial Melons
    Shirin Mal Ganji, Harmit Singh, Mendel Friedman
    Journal of Food Science.2019; 84(7): 1943.     CrossRef
  • Effect of stirring on growth and cellulolytic enzymes production by Trichoderma harzianum in a novel bench-scale solid-state fermentation bioreactor
    N. Lopez-Ramirez, T. Volke-Sepulveda, I. Gaime-Perraud, G. Saucedo-Castañeda, E. Favela-Torres
    Bioresource Technology.2018; 265: 291.     CrossRef
  • The effect of lyophilization and storage time on the survival rate and hydrolytic activity of Trichoderma strains
    Monika Grzegorczyk, Anna Kancelista, Wojciech Łaba, Michał Piegza, Danuta Witkowska
    Folia Microbiologica.2018; 63(4): 433.     CrossRef
  • Fruit and Vegetable Waste: Bioactive Compounds, Their Extraction, and Possible Utilization
    Narashans Alok Sagar, Sunil Pareek, Sunil Sharma, Elhadi M. Yahia, Maria Gloria Lobo
    Comprehensive Reviews in Food Science and Food Safety.2018; 17(3): 512.     CrossRef
  • Far infrared radiated energy-proficient rapid one-pot green hydrolysis of waste watermelon peel: optimization and heterogeneous kinetics of glucose synthesis
    Swapnendu Chatterjee, Sourav Barman, Rajat Chakraborty
    RSC Advances.2016; 6(78): 74278.     CrossRef
  • Valorization of banana peel: a biorefinery approach
    Pranav D. Pathak, Sachin A. Mandavgane, Bhaskar D. Kulkarni
    Reviews in Chemical Engineering.2016; 32(6): 651.     CrossRef
  • A Novel Non-Cumbersome Approach Towards Biosynthesis of Pectic-Oligosaccharides by Non-Aflatoxigenic Aspergillus sp. Section Flavi Strain EGY1 DSM 101520 through Citrus Pectin Fermentation
    Amira M. Embaby, Ramy R. Melika, Ahmed Hussein, Amal H. El-Kamel, Heba S. Marey, Tamás Papp
    PLOS ONE.2016; 11(12): e0167981.     CrossRef
  • Multivariate Optimization and Supplementation Strategies for the Simultaneous Production of Amylases, Cellulases, Xylanases, and Proteases by Aspergillus awamori Under Solid-State Fermentation Conditions
    Aline Machado de Castro, Leda R. Castilho, Denise Maria Guimarães Freire
    Applied Biochemistry and Biotechnology.2015; 175(3): 1588.     CrossRef
  • Xylanase production by endophyticAspergillus nigerusing pentose-rich hydrothermal liquor from sugarcane bagasse
    Diogo Robl, Priscila da Silva Delabona, Patrícia dos Santos Costa, Deise Juliana da Silva Lima, Sarita Candida Rabelo, Ida Chapaval Pimentel, Fernanda Büchli, Fabio Marcio Squina, Gabriel Padilla, José Geraldo da Cruz Pradella
    Biocatalysis and Biotransformation.2015; 33(3): 175.     CrossRef
  • Saccharification and hydrolytic enzyme production of alkali pre-treated wheat bran by Trichoderma virens under solid state fermentation
    Reda M. El-Shishtawy, Saleh A. Mohamed, Abdullah M. Asiri, Abu-bakr M. Gomaa, Ibrahim H. Ibrahim, Hasan A. Al-Talhi
    BMC Biotechnology.2015;[Epub]     CrossRef
  • Solid fermentation of wheat bran for hydrolytic enzymes production and saccharification content by a local isolate Bacillus megatherium
    Reda M El-Shishtawy, Saleh A Mohamed, Abdullah M Asiri, Abu-bakr M Gomaa, Ibrahim H Ibrahim, Hasan A Al-Talhi
    BMC Biotechnology.2014;[Epub]     CrossRef
Review
MINIREVIEW] Toxin-producing Cyanobacteria in Freshwater: A Review of the Problems, Impact on Drinking Water Safety, and Efforts for Protecting Public Health
Melissa Y. Cheung , Song Liang , Jiyoung Lee
J. Microbiol. 2013;51(1):1-10.   Published online March 2, 2013
DOI: https://doi.org/10.1007/s12275-013-2549-3
  • 260 View
  • 0 Download
  • 179 Crossref
AbstractAbstract PDF
Cyanobacteria have adapted to survive in a variety of environments and have been found globally. Toxin-producing cyanobacterial harmful algal blooms (CHABs) have been increasing in frequency worldwide and pose a threat to drinking and recreational water. In this study, the prevalence, impact of CHABs and mitigation efforts were reviewed, focusing on the Lake Erie region and Ohio’s inland lakes that have been impacted heavily as an example so that the findings can be transferrable to other parts of the world that face the similar problems due to the CHABs in their freshwater environments. This paper provides a basic introduction to CHABs and their toxins as well as an overview of public health implications including exposure routes, health effects, and drinking water issues, algal bloom advisory practices in Ohio, toxin measurements results in Ohio public water supplies, and mitigation efforts.

Citations

Citations to this article as recorded by  
  • Cyanotoxins in water resources of the mediterranean region: a review of their occurrence and proposals for the protection of public health
    Ioanna Damikouka, Elizabeth Vgenopoulou
    Euro-Mediterranean Journal for Environmental Integration.2026;[Epub]     CrossRef
  • Current Capabilities and Challenges of Remote Sensing in Monitoring Freshwater Cyanobacterial Blooms: A Scoping Review
    Jianyong Wu, Yanni Cao, Shuqi Wu, Smita Parajuli, Kaiguang Zhao, Jiyoung Lee
    Remote Sensing.2025; 17(5): 918.     CrossRef
  • Physicochemical and statistical analysis of water and microplastics in a drinking water reservoir in México
    Francisco Agustín Reyes-García, Estefanía Martínez-Tavera, Sonia Martínez-Gallegos, Javier Illescas
    MRS Advances.2025; 10(6): 800.     CrossRef
  • Elucidation of Mechanisms by Which Microplastics (PET) Facilitates the Rapid Growth of Benthic Cyanobacteria and Toxin Production in Aquatic Ecosystems
    Rashid Mir, Shrooq Albarqi, Wed Albalawi, Ghaida Alanazi, Shouq S. Alsubaie, Razan I. Alghaban, Hanadi Saud Alanazi, Nora Taleb Alsharif, Manal M. Aljammaz, Nouf Faisal Alghabban, Wafaa Seluman Alhwiti, Alaa Albogmi, Faras Falah Alblwi
    Metabolites.2025; 15(6): 383.     CrossRef
  • Uncovering microbial interactions in a persistent Planktothrix bloom: Towards early biomarker identification in hypereutrophic lakes
    Mashuk Siddiquee, Sara Cornelius, Youngwoo Seo, George S. Bullerjahn, Thomas B. Bridgeman, Mike Sudman Jr., Dae-Wook Kang
    Water Research.2025; 283: 123683.     CrossRef
  • Investigation into Paralytic Shellfish Toxins and Microcystins in Seabirds from Portugal
    Lucía Soliño, Andrew D. Turner, Begoña Ben-Gigirey, Ryan P. Alexander, Karl J. Dean, Robert G. Hatfield, Benjamin H. Maskrey, María V. Mena Casero
    Toxins.2025; 17(3): 135.     CrossRef
  • Field-scale artificial floating islands reduces cyanotoxin from residential raw sewage treatment basin
    Zhaozhe Chen, Jiyoung Lee, Molly Mills, Abigail Volk, Ozeas S. Costa
    Ecological Engineering.2025; 212: 107543.     CrossRef
  • Single and combined toxicity of copper and cadmium on Microcystis aeruginosa: effects on growth, oxidative stress and gene expression
    Qing Cao, Bensheng You, Haibo Xu, Weijing Liu, Shuzhan Ma
    Environmental Earth Sciences.2025;[Epub]     CrossRef
  • Disproportionate Economic and Regulatory Challenges of Harmful Algal Blooms in Vulnerable Communities: A Multidisciplinary Analysis
    Rachel Kennard, Samuel Sandoval-Solis
    Journal of Water Resources Planning and Management.2025;[Epub]     CrossRef
  • Dominant Dolichospermum and microcystin production in Detroit Lake (Oregon, USA)
    Youchul Jeon, Ian Struewing, Kale Clauson, Nathan Reetz, Ned Fairchild, Lacey Goeres-Priest, Theo W. Dreher, Rochelle Labiosa, Kurt D. Carpenter, Barry H. Rosen, Eric N. Villegas, Jingrang Lu
    Harmful Algae.2025; 142: 102802.     CrossRef
  • A review on remote-sensing-based harmful cyanobacterial bloom monitoring services
    Nasim Janatian, Urmas Raudsepp, Parya Broomandi, Kate Fickas, Kalle Olli, Timo Heimovaara, Aarne Mannik, Rivo Uiboupin, Nima Pahlevan
    Remote Sensing Applications: Society and Environment.2025; 37: 101488.     CrossRef
  • Key drivers of microcystin-producing cyanobacteria in South Korean eutrophic waters determined with data-driven models
    Jayun Kim, Jiyoung Lee, Jason W. Marion, Joonhong Park
    Journal of Environmental Management.2025; 392: 126616.     CrossRef
  • Bacteriophages carry auxiliary metabolic genes related to energy, sulfur and phosphorus metabolism during a harmful algal bloom in a freshwater lake
    Bishav Bhattarai, Ananda Shankar Bhattacharjee, Felipe H. Coutinho, Hanyan Li, Sreeni Chadalavada, Ramesh Goel
    Chemosphere.2025; 370: 143819.     CrossRef
  • Monitoring cyanobacteria temporal dynamics in a hypereutrophic lake using remote sensing: From multispectral to hyperspectral
    Samantha L. Sharp, Alicia Cortés, Alexander L. Forrest, Carl J. Legleiter, Liane S. Guild, Yufang Jin, S. Geoffrey Schladow
    Remote Sensing Applications: Society and Environment.2025; 39: 101704.     CrossRef
  • Potential Linkage Between Zebra Mussel Establishment, Cyanobacterial Community Composition, and Microcystin Levels in United States Lakes
    Feng Zhang, Jayun Kim, Ozeas S. Costa, Song Liang, Jiyoung Lee
    Toxins.2025; 17(9): 447.     CrossRef
  • Profiling domestic water bacteriome within the rainwater harvesting-dependent community of Carriacou Island, Grenada in the Southern Caribbean
    Akilah T. M. Stewart, Adrian Cashman, John Agard, Dave Chadee, Adesh Ramsubhag, Guillaume Wright
    PLOS Water.2025; 4(8): e0000380.     CrossRef
  • Unraveling the mysteries of the plastisphere: a comprehensive analysis of its composition, toxicity, and ecological impact
    Malika Moncer, Asma Hamza, Lamia Trabelsi
    Journal of Sedimentary Environments.2025; 10(2): 303.     CrossRef
  • Report of the Scientific Committee of the Spanish Agency for Food Safety and Nutrition (AESAN) on the effects of climate change on the risk of transmission of foodborne pathogens
    Antonio Valero Díaz, Rosa María Capita González, Baltasar Mayo Pérez, Azucena del Carmen Mora Gutiérrez, María Dolores Rodrigo Aliaga, Gloria Sánchez Moragas, Paula Arrabal Durán
    Food Risk Assess Europe.2025;[Epub]     CrossRef
  • A novel artificial intelligence–powered cell counting tool coupled with digital microscopy for rapid field‐assessment of harmful cyanobacterial blooms
    Igor Mrdjen, Zacharias J. Smith, Abby M. Webster, Christopher C. Nack, Bryan Arndt, Danara Dormaeva, Gregory L. Boyer, N. Roxanna Razavi, Stephen B. Shaw
    Limnology and Oceanography: Methods.2025; 23(11): 788.     CrossRef
  • Climate variability is an important driver of water treatability in a shallow reservoir
    Danielle S. Spence, Kristin J. Painter, Ali Nazemi, Jason J. Venkiteswaran, Helen M. Baulch
    Science of The Total Environment.2025; 1004: 180786.     CrossRef
  • Biomass of Microalgae and Other Phototrophic Microorganisms: Current Trends in Regulation of Its Accumulation and Application of Immobilized Forms
    Elena Efremenko, Olga Senko, Kamella Teplova, Aysel Aslanli
    Applied Sciences.2025; 15(23): 12775.     CrossRef
  • Mitigating harmful cyanobacterial blooms in drinking water reservoirs through in-situ sediment resuspension
    Jiao Fang, Yande Li, Ming Su, Tengxin Cao, Xufeng Sun, Yufan Ai, Jinyi Qin, Jianwei Yu, Min Yang
    Water Research.2024; 267: 122509.     CrossRef
  • Monitoring network optimization and impact of fish farming upon water quality in the Três Marias Hydroelectric Reservoir, Brazil
    Maria Clara V M Starling, Cristiano Christofaro, Luiz Eduardo Macedo-Reis, Phillippe Maillard, Camila C Amorim
    Environmental Science and Pollution Research.2024; 31(9): 13455.     CrossRef
  • Food Webs and Feedbacks: The Untold Ecological Relevance of Antimicrobial Resistance as Seen in Harmful Algal Blooms
    Aabir Banerji, Nichole E. Brinkman, Benjamin Davis, Alison Franklin, Michael Jahne, Scott P. Keely
    Microorganisms.2024; 12(11): 2121.     CrossRef
  • Reliable assessment and prediction of moderate preoxidation of sodium hypochlorite for algae-laden water treatment
    Zhiwei Zhou, Tianjie Sun, Xing Li, Jiawei Ren, Zedong Lu, Yuankun Liu, Kai Li, Fangshu Qu
    Water Research.2024; 266: 122398.     CrossRef
  • A rapid and efficient method using electroporation for releasing intracellular microcystin toxins from cultured and naturally occurring cyanobacterial cells in lake water
    Yuehan Ai, Paul Bertani, Hao Yang, Seungjun Lee, Wu Lu, Jiyoung Lee
    Marine Pollution Bulletin.2024; 198: 115890.     CrossRef
  • Cyanobacterial Cyclic Peptides Can Disrupt Cytoskeleton Organization in Human Astrocytes—A Contribution to the Understanding of the Systemic Toxicity of Cyanotoxins
    Anja Bubik, Robert Frangež, Monika C. Žužek, Ion Gutiérrez-Aguirre, Tamara T. Lah, Bojan Sedmak
    Toxins.2024; 16(9): 374.     CrossRef
  • Toward a Brighter Future: Enhanced Sustainable Methods for Preventing Algal Blooms and Improving Water Quality
    Su-Ok Hwang, In-Hwan Cho, Ha-Kyung Kim, Eun-A Hwang, Byung-Hun Han, Baik-Ho Kim
    Hydrobiology.2024; 3(2): 100.     CrossRef
  • Snapshot of cyanobacterial toxins in Pakistani freshwater bodies
    Uzma Batool, Nicolas Tromas, Dana F. Simon, Sébastien Sauvé, B. Jesse Shapiro, Mehboob Ahmed
    Environmental Science and Pollution Research.2024; 31(16): 24648.     CrossRef
  • Assessment of the Applicability of Compact Aerating Reactors for the Improvement of Water Quality in a Small Water Body Functioning in an Agricultural Catchment
    Stanisław Chmiel, Marta Ziółek, Magdalena Kończak, Mariusz Pliżga, Beata Zielińska, Grzegorz Maliszewski, Mirosław Biruk, Sylwia Duda-Saternus
    Sustainability.2024; 16(13): 5629.     CrossRef
  • Dynamic microbiome and mobile resistome are revealed in river biofilms from a multi-use watershed through long-read sequencing
    Molly Mills, Thomas Wittum, Jiyoung Lee
    Frontiers in Environmental Science.2024;[Epub]     CrossRef
  • Disinfection Byproducts and Their Precursors in Drinking Water Sources: Origins, Influencing Factors, and Environmental Insights
    Rong Xiao, Yang Deng, Zuxin Xu, Wenhai Chu
    Engineering.2024; 36: 36.     CrossRef
  • A novel index reveals disconnects between recreational harmful algal bloom exposure risks and responses among U.S. states
    Walter K. Dodds, Sophia M. Bonjour, Molly Fisher, Laura J. Krueger, Peter J. Pfaff, Md. Abu Raihan, Olivia Rode
    JAWRA Journal of the American Water Resources Association.2024; 60(2): 273.     CrossRef
  • Harmful Cyanobacterial Blooms: Going beyond the “Green” to Monitor and Predict HCBs
    Daniela R. de Figueiredo
    Hydrobiology.2024; 3(1): 11.     CrossRef
  • Two duckweed species exhibit variable tolerance to microcystin-LR exposure across genotypic lineages
    Lacey D. Rzodkiewicz, Martin M. Turcotte
    Harmful Algae.2024; 131: 102548.     CrossRef
  • Urban stormwater green infrastructure: Evaluating the public health service role of bioretention using microbial source tracking and bacterial community analyses
    Emma Lancaster, Ryan Winston, Jay Martin, Jiyoung Lee
    Water Research.2024; 259: 121818.     CrossRef
  • Molecular Detection of Cylindrospermopsin-Producing Cyanobacteria in the Coasts of Hormozgan Province, Iran
    Elmira Eivazpour Nami, Mohammad Hassan Shah Hoseini, Alireza Dehnad
    Avicenna Journal of Clinical Microbiology and Infection.2024; 11(1): 17.     CrossRef
  • Expert insights on managing harmful algal blooms
    Sarah Goodrich, Katherine Nicole Canfield, Kate Mulvaney
    Frontiers in Freshwater Science.2024;[Epub]     CrossRef
  • Cyanobacteria Harmful Algae Blooms: Causes, Impacts, and Risk Management
    Aboi Igwaran, Adeoye John Kayode, Karabelo M. Moloantoa, Zenzile P. Khetsha, John Onolame Unuofin
    Water, Air, & Soil Pollution.2024;[Epub]     CrossRef
  • Tracing the fate of microcystins from irrigation water to food chains: Studies with Fragaria vulgaris and Meriones shawi
    Mohammed Haida, Fatima El khalloufi, Lahcen Tamegart, Richard Mugani, Yasser Essadki, El Mahdi Redouane, Joana Azevedo, Mário Jorge Araújo, Alexandre Campos, Vitor Vasconcelos, Halima Gamrani, Brahim Oudra
    Toxicon.2023; 236: 107345.     CrossRef
  • Microcystin-leucine-arginine affects brain gene expression programs and behaviors of offspring through paternal epigenetic information
    Jiayi Xu, Weiyun Zhang, Shengzheng Zhong, Xinxin Xie, Huimin Che, Weirong Si, Xun Tuo, Dexiang Xu, Sujuan Zhao
    Science of The Total Environment.2023; 857: 159032.     CrossRef
  • Application of solid phase adsorption toxin tracking technology (SPATT) for monitoring microcystins in farm dams in Levubu farming area, South Africa
    G.K. Pindihama, W.M. Gitari, S. Mukangaya
    Physics and Chemistry of the Earth, Parts A/B/C.2023; 132: 103500.     CrossRef
  • Prediction of algal bloom using a combination of sparse modeling and a machine learning algorithm: Automatic relevance determination and support vector machine
    Yohei Miura, Hiroomi Imamoto, Yasuhiro Asada, Masaki Sagehashi, Michihiro Akiba, Osamu Nishimura, Daisuke Sano
    Ecological Informatics.2023; 78: 102337.     CrossRef
  • Water Quality and Toxic Cyanobacteria in Oligohaline Estuary Beaches During the Longest Mississippi River Basin Flood Event in 2019
    Sibel Bargu, Brady Skaggs, Monique Boudreaux, Courtney N. Hammond, Callie Snow, Tiong Gim Aw, Richard Stumpf
    Estuaries and Coasts.2023; 46(7): 1865.     CrossRef
  • Harmful Algal Blooms: A Prolific Issue in Urban Stormwater Ponds
    Amy E. Grogan, Catharina Alves-de-Souza, Lawrence B. Cahoon, Michael A. Mallin
    Water.2023; 15(13): 2436.     CrossRef
  • Oral Palatability and Owners’ Perception of the Effect of Increasing Amounts of Spirulina (Arthrospira platensis) in the Diet of a Cohort of Healthy Dogs and Cats
    Davide Stefanutti, Gloria Tonin, Giada Morelli, Raffaella Margherita Zampieri, Nicoletta La Rocca, Rebecca Ricci
    Animals.2023; 13(8): 1275.     CrossRef
  • Short-Term Meteorological Conditions Explain Cyanobacterial Blooms in a Tropical Reservoir
    Florencia Soledad Alvarez Dalinger, Verónica Laura Lozano, Claudia Nidia Borja, Liliana Beatriz Moraña, Salusso María Mónica
    Water.2023; 15(2): 302.     CrossRef
  • A rapid LC-MS/MS method for multi-class identification and quantification of cyanotoxins
    Fernanda Rios Jacinavicius, Thaíssa Giovanna Valverde Campos, Larissa Souza Passos, Ernani Pinto, Vanessa Geraldes
    Toxicon.2023; 234: 107282.     CrossRef
  • Cyanotoxins in groundwater; occurrence, potential sources, health impacts and knowledge gap for public health
    Mulalo I. Mutoti, Joshua N. Edokpayi, Ntwanano Mutileni, Olatunde S. Durowoju, Fhatuwani L. Munyai
    Toxicon.2023; 226: 107077.     CrossRef
  • Patterns and impacts of cyanobacteria in a deep, thermally stratified, oligotrophic lake
    Anthony R. Prestigiacomo, Rebecca M. Gorney, James B. Hyde, Courtney Davis, Aimee Clinkhammer
    AWWA Water Science.2023;[Epub]     CrossRef
  • Beneath the surface: spatial and temporal trends in water quality and its impacts on algal community composition in the Albemarle Sound, North Carolina
    Emma T. Brentjens, Anika R. Bratt
    Aquatic Ecology.2023; 57(2): 243.     CrossRef
  • Toxicity effects of disinfection byproduct chloroacetic acid to Microcystis aeruginosa: Cytotoxicity and mechanisms
    Jing Ye, Jiawei Ni, Fuxiang Tian, Xiyan Ji, Meifang Hou, Yuanting Li, Lei Yang, Runxiang Wang, Wenwu Xu, Liang Meng
    Journal of Environmental Sciences.2023; 129: 229.     CrossRef
  • Facilitating the determination of microcystin toxins with bio-inspired sensors
    Bingzhi Li, Qiusu Wang, Muhammad Sohail, Xing Zhang, Huan He, Lei Lin
    Microchemical Journal.2023; 189: 108482.     CrossRef
  • Host microbiome associated low intestinal acetate correlates with progressive NLRP3-dependent hepatic-immunotoxicity in early life microcystin-LR exposure
    Madhura More, Somdatta Chatterjee, Punnag Saha, Dipro Bose, Ayushi Trivedi, Subhajit Roy, Saurabh Chatterjee
    BMC Pharmacology and Toxicology.2023;[Epub]     CrossRef
  • Microcystin Concentrations, Partitioning, and Structural Composition during Active Growth and Decline: A Laboratory Study
    Emily F. Pierce, Astrid Schnetzer
    Toxins.2023; 15(12): 684.     CrossRef
  • Scenario-based land use modeling for nutrient management in the Skaneateles Lake Watershed
    Robert A. Rioux, Aaron L. Strong
    Environmental Challenges.2023; 12: 100739.     CrossRef
  • Beyond cyanotoxins: increased Legionella, antibiotic resistance genes in western Lake Erie water and disinfection-byproducts in their finished water
    Jiyoung Lee, Seungjun Lee, Chenlin Hu, Jason W. Marion
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Harmful and beneficial properties of cyanotoxins: Two sides of the same coin
    Annarita Ricciardelli, Antonino Pollio, Maria Costantini, Valerio Zupo
    Biotechnology Advances.2023; 68: 108235.     CrossRef
  • Cyanobacterial biomass prediction in a shallow lake using the time series SARIMAX models
    Yan Guo, Xijun Lai, Min Gan
    Ecological Informatics.2023; 78: 102292.     CrossRef
  • Field application of biologically derived substances (BDSs: Naphthoquinone derivative) for eco-friendly mitigation of harmful cyanobacterial blooms
    Jae-Hyoung Joo, Yoon-Ho Kang, Zhun Li, Sae-Hee Kim, Bum Soo Park, Myung-Soo Han
    Journal of Applied Phycology.2023; 35(5): 2271.     CrossRef
  • Freshwater Mussels, Ecosystem Services, and Clean Water Regulation in Minnesota: Formulating an Effective Conservation Strategy
    Baishali Bakshi, R. William Bouchard, Robert Dietz, Daniel Hornbach, Philip Monson, Bernard Sietman, Dennis Wasley
    Water.2023; 15(14): 2560.     CrossRef
  • Evaluation of planktonic cyanobacteria in Peruvian freshwater lentic water bodies: prevalence and regulatory framework to aid policy making
    Anthony Salazar-Torres, Danny Robles, Alonso Reyes, Mónica C. Santa-Maria, Patrick Venail
    Environmental Monitoring and Assessment.2023;[Epub]     CrossRef
  • Examination of Microcystin Adsorption by the Type of Plastic Materials Used during the Procedure of Microcystin Analysis
    Chan Seo, Joo Won Lee, Won-Kyo Jung, Yoon-Mi Lee, Seungjun Lee, Sang Gil Lee
    Toxins.2022; 14(9): 625.     CrossRef
  • Immobilization of Microbes for Biodegradation of Microcystins: A Mini Review
    Jiajia Zhang, Jia Wei, Isaac Yaw Massey, Tangjian Peng, Fei Yang
    Toxins.2022; 14(8): 573.     CrossRef
  • Harmful algal bloom-related 311 calls, Cape Coral, Florida 2018–2019
    Christopher K. Uejio, Elaina Gonsoroski, Samendra P. Sherchan, Leslie Beitsch, E. W. Harville, C. Blackmore, K. Pan, Maureen Y. Lichtveld
    Journal of Water and Health.2022; 20(3): 531.     CrossRef
  • The success of the bloom-forming cyanobacteria Planktothrix: Genotypes variability supports variable responses to light and temperature stress
    Sandra Kim Tiam, Katia Comte, Caroline Dalle, Marine Delagrange, Chakib Djediat, Bertrand Ducos, Charlotte Duval, Kathleen Feilke, Sahima Hamlaoui, Séverine Le Manach, Pierre Setif, Claude Yéprémian, Benjamin Marie, Diana Kirilovsky, Muriel Gugger, Cécile
    Harmful Algae.2022; 117: 102285.     CrossRef
  • High-resolution temporal detection of cyanobacterial blooms in a deep and oligotrophic lake by high-frequency buoy data
    Manxue Zhang, Yunlin Zhang, Jianming Deng, Miao Liu, Yongqiang Zhou, Yibo Zhang, Kun Shi, Cuiling Jiang
    Environmental Research.2022; 203: 111848.     CrossRef
  • Multiple roles of bamboo as a regulator of cyanobacterial bloom in aquatic systems
    Aimin Hao, Mengyao Su, Sohei Kobayashi, Min Zhao, Yasushi Iseri
    Scientific Reports.2022;[Epub]     CrossRef
  • Relationship between freshwater harmful algal blooms and neurodegenerative disease incidence rates in South Korea
    Seungjun Lee, Boseung Choi, Sung Jae Kim, Jinnam Kim, Dayun Kang, Jiyoung Lee
    Environmental Health.2022;[Epub]     CrossRef
  • Occurrence of cyanobacteria in water used for food production: A review
    Mulalo Mutoti, Jabulani Gumbo, Afam Israel Obiefuna Jideani
    Physics and Chemistry of the Earth, Parts A/B/C.2022; 125: 103101.     CrossRef
  • Detection and Occurrence of Microcystins and Nodularins in Lake Manatee and Lake Washington-Two Floridian Drinking Water Systems
    Rajesh Melaram, Brandon Lopez-Dueñas
    Frontiers in Water.2022;[Epub]     CrossRef
  • Evaluation of the Role of Probiotics As a New Strategy to Eliminate Microbial Toxins: a Review
    Abdolamir Ghadaksaz, Somayeh Mousavi Nodoushan, Hamid Sedighian, Elham Behzadi, Abbas Ali Imani Fooladi
    Probiotics and Antimicrobial Proteins.2022; 14(2): 224.     CrossRef
  • Octocrylene: From Sunscreens to the Degradation Pathway during Chlorination Processes: Formation of Byproducts and Their Ecotoxicity Assessment
    Antonio Medici, Lorenzo Saviano, Antonietta Siciliano, Giovanni Libralato, Marco Guida, Lucio Previtera, Giovanni Di Fabio, Armando Zarrelli
    Molecules.2022; 27(16): 5286.     CrossRef
  • Health impact assessment of air pollution in an area of the largest coal mine in Brazil
    Laiz Coutelle Honscha, Julia Oliveira Penteado, Valério de Sá Gama, Alícia da Silva Bonifácio, Priscila Aikawa, Marina dos Santos, Paulo Roberto Martins Baisch, Ana Luíza Muccillo-Baisch, Flavio Manoel Rodrigues da Silva Júnior
    Environmental Science and Pollution Research.2022; 29(10): 14176.     CrossRef
  • Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining
    Kang Du, Feng Yang, Jun-Tao Zhang, Rong-Cheng Yu, Ziqing Deng, Wei-Fang Li, Yuxing Chen, Qiong Li, Cong-Zhao Zhou
    Microbiome.2022;[Epub]     CrossRef
  • Prediction of Microcystis Occurrences and Analysis Using Machine Learning in High-Dimension, Low-Sample-Size and Imbalanced Water Quality Data
    Masaya Mori, Roberto Gonzalez Flores, Yoshihiro Suzuki, Kei Nukazawa, Toru Hiraoka, Hirofumi Nonaka
    Harmful Algae.2022; 117: 102273.     CrossRef
  • Near‐term phytoplankton forecasts reveal the effects of model time step and forecast horizon on predictability
    Whitney M. Woelmer, R. Quinn Thomas, Mary E. Lofton, Ryan P. McClure, Heather L. Wander, Cayelan C. Carey
    Ecological Applications.2022;[Epub]     CrossRef
  • Identifying the influence of zebra and quagga mussels on sedimentary phosphorus dynamics in western Lake Erie
    Fasong Yuan, Robert A. Krebs, Amanda N. Wagner
    Hydrobiologia.2021; 848(8): 1897.     CrossRef
  • Effects of harmful algal blooms on regulated disinfection byproducts: Findings from five utility case studies
    Katherine Foreman, Deborah Vacs Renwick, Morgan McCabe, Adam Cadwallader, Hannah Holsinger, Charlene Kormondy, Ryan Albert
    AWWA Water Science.2021;[Epub]     CrossRef
  • Rapid detection and quantification of microcystins in surface water by an impedimetric immunosensor
    Abraham O. Ogungbile, Idan Ashur, Itzik Icin, Orr H. Shapiro, Sefi Vernick
    Sensors and Actuators B: Chemical.2021; 348: 130687.     CrossRef
  • Florida’s Harmful Algal Bloom (HAB) Problem: Escalating Risks to Human, Environmental and Economic Health With Climate Change
    Cynthia Ann Heil, Amanda Lorraine Muni-Morgan
    Frontiers in Ecology and Evolution.2021;[Epub]     CrossRef
  • Killing effect of deinoxanthins on cyanobloom-forming Microcystis aeruginosa: Eco-friendly production and specific activity of deinoxanthins
    Wonjae Kim, Minkyung Kim, Minyoung Hong, Woojun Park
    Environmental Research.2021; 200: 111455.     CrossRef
  • Design and Preliminary Testing of an In-Field Passive Treatment System for Removing Phosphorus from Surface Water
    George Carleton, Jessica Glowczewski, Teresa Cutright
    Applied Sciences.2021; 11(9): 3743.     CrossRef
  • A machine learning approach for early warning of cyanobacterial bloom outbreaks in a freshwater reservoir
    Yongeun Park, Han Kyu Lee, Jae-Ki Shin, Kangmin Chon, SungHwan Kim, Kyung Hwa Cho, Jin Hwi Kim, Sang-Soo Baek
    Journal of Environmental Management.2021; 288: 112415.     CrossRef
  • Harmful Cyanobacterial Blooms (HCBs): innovative green bioremediation process based on anti-cyanobacteria bioactive natural products
    Soukaina El Amrani Zerrifi, Richard Mugani, El Mahdi Redouane, Fatima El Khalloufi, Alexandre Campos, Vitor Vasconcelos, Brahim Oudra
    Archives of Microbiology.2021; 203(1): 31.     CrossRef
  • Uncovering Research Trends of Phycobiliproteins Using Bibliometric Approach
    Hui Teng Tan, Fatimah Md. Yusoff, Yam Sim Khaw, Siti Aqlima Ahmad, Noor Azmi Shaharuddin
    Plants.2021; 10(11): 2358.     CrossRef
  • Controlling Eutrophication via Surface Aerators in Irregular-Shaped Urban Ponds
    Aimin Hao, Sohei Kobayashi, Dong Xia, Qi Mi, Ning Yan, Mengyao Su, Aishou Lin, Min Zhao, Yasushi Iseri
    Water.2021; 13(23): 3360.     CrossRef
  • Acute health effects associated with satellite-determined cyanobacterial blooms in a drinking water source in Massachusetts
    Jianyong Wu, Elizabeth D. Hilborn, Blake A. Schaeffer, Erin Urquhart, Megan M. Coffer, Cynthia J. Lin, Andrey I. Egorov
    Environmental Health.2021;[Epub]     CrossRef
  • Acclimation of an algal consortium to sequester nutrients from anaerobic digestate
    Qichen Wang, Jessa Cherones, Brendan Higgins
    Bioresource Technology.2021; 342: 125921.     CrossRef
  • Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters
    Yohei Shimura, Takatomo Fujisawa, Yuu Hirose, Naomi Misawa, Yu Kanesaki, Yasukazu Nakamura, Masanobu Kawachi
    Harmful Algae.2021; 101: 101942.     CrossRef
  • Inhibition of endoplasmic reticulum stress-related autophagy attenuates MCLR-induced apoptosis in zebrafish testis and mouse TM4 cells
    Zaiwei Wu, Fang Wang, Liwen Hu, Jianrong Zhang, Daojun Chen, Sujuan Zhao
    Ecotoxicology and Environmental Safety.2021; 221: 112438.     CrossRef
  • Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
    M. Sagova-Mareckova, J. Boenigk, A. Bouchez, K. Cermakova, T. Chonova, T. Cordier, U. Eisendle, T. Elersek, S. Fazi, T. Fleituch, L. Frühe, M. Gajdosova, N. Graupner, A. Haegerbaeumer, A.-M. Kelly, J. Kopecky, F. Leese, P. Nõges, S. Orlic, K. Panksep, J.
    Water Research.2021; 191: 116767.     CrossRef
  • Recent trends in the detection of freshwater cyanotoxins with a critical note on their occurrence in Asia
    Prabir Kumar Kulabhusan, Katrina Campbell
    Trends in Environmental Analytical Chemistry.2021; 32: e00150.     CrossRef
  • Acute cyanotoxin poisoning reveals a marginal effect on mouse gut microbiome composition but indicates metabolic shifts related to liver and gut inflammation
    Molly C. Mills, Morgan V. Evans, Seungjun Lee, Thomas Knobloch, Christopher Weghorst, Jiyoung Lee
    Ecotoxicology and Environmental Safety.2021; 215: 112126.     CrossRef
  • Quantifying Scales of Spatial Variability of Cyanobacteria in a Large, Eutrophic Lake Using Multiplatform Remote Sensing Tools
    Samantha L. Sharp, Alexander L. Forrest, Keith Bouma-Gregson, Yufang Jin, Alicia Cortés, S. Geoffrey Schladow
    Frontiers in Environmental Science.2021;[Epub]     CrossRef
  • Climate Change and Emerging Food Safety Issues: A Review
    Ramona A. Duchenne-Moutien, Hudaa Neetoo
    Journal of Food Protection.2021; 84(11): 1884.     CrossRef
  • Assessing Impacts of Changes in External Nutrient Loadings on a Temperate Chinese Drinking Water Reservoir
    Qingchuan Chou, Anders Nielsen, Tobias K. Andersen, Fenjuan Hu, Weiyu Chen, Xiaolin Zhang, Te Cao, Leyi Ni, Erik Jeppesen, Dennis Trolle
    Frontiers in Environmental Science.2021;[Epub]     CrossRef
  • Diatomite-enhanced coagulation for algal removal in polluted raw water: performance optimization and pilot-scale study
    Chao Jiang, Wei Ding, Weitang Zhu, Liang Zhu, Xiangyang Xu
    Environmental Science and Pollution Research.2021; 28(36): 50204.     CrossRef
  • The Application of Potassium Permanganate to Treat Cyanobacteria-Laden Water: a Review
    Kayla Piezer, Lei Li, Youchul Jeon, Anusha Kadudula, Youngwoo Seo
    Process Safety and Environmental Protection.2021; 148: 400.     CrossRef
  • LC and NMR Studies for Identification and Characterization of Degradation Byproducts of Olmesartan Acid, Elucidation of Their Degradation Pathway and Ecotoxicity Assessment
    Giovanni Luongo, Antonietta Siciliano, Giovanni Libralato, Sara Serafini, Lorenzo Saviano, Lucio Previtera, Giovanni Di Fabio, Armando Zarrelli
    Molecules.2021; 26(6): 1769.     CrossRef
  • Quantifying the Human Health Benefits of Using Satellite Information to Detect Cyanobacterial Harmful Algal Blooms and Manage Recreational Advisories in U.S. Lakes
    Signe Stroming, Molly Robertson, Bethany Mabee, Yusuke Kuwayama, Blake Schaeffer
    GeoHealth.2020;[Epub]     CrossRef
  • Synthesis of new tetronamides displaying inhibitory activity against bloom‐forming cyanobacteria
    Jaime AM Acosta, Milandip Karak, Luiz CA Barbosa, John Boukouvalas, Andrea Straforini, Giuseppe Forlani
    Pest Management Science.2020; 76(2): 779.     CrossRef
  • Analysis of Covalently Bound Microcystins in Sediments and Clam Tissue in the Sacramento–San Joaquin River Delta, California, USA
    Melissa Bolotaolo, Tomofumi Kurobe, Birgit Puschner, Bruce G Hammock, Matt J. Hengel, Sarah Lesmeister, Swee J. Teh
    Toxins.2020; 12(3): 178.     CrossRef
  • Concise Synthesis of (+)‐[13C4]‐Anatoxin‐a by Dynamic Kinetic Resolution of a Cyclic Iminium Ion
    Jacob J. Lacharity, Artur K. Mailyan, Karen Y. Chen, Armen Zakarian
    Angewandte Chemie.2020; 132(28): 11460.     CrossRef
  • Enhanced resistance of co-existing toxigenic and non-toxigenic Microcystis aeruginosa to pyrogallol compared with monostrains
    Yunni Gao, Jing Lu, Philip T. Orr, Ann Chuang, Hannah M. Franklin, Michele A. Burford
    Toxicon.2020; 176: 47.     CrossRef
  • Drinking water treatment residuals from cyanobacteria bloom-affected areas: Investigation of potential impact on agricultural land application
    Yuehan Ai, Seungjun Lee, Jiyoung Lee
    Science of The Total Environment.2020; 706: 135756.     CrossRef
  • Relationship between cyanobacterial bloom impacted drinking water sources and hepatocellular carcinoma incidence rates
    Tyler Gorham, Elisabeth Dowling Root, Yuanyuan Jia, C.K. Shum, Jiyoung Lee
    Harmful Algae.2020; 95: 101801.     CrossRef
  • Microcystis Bloom in an Urban Lake after River Water Diversion—A Case Study
    Xiaoyan Chen, Dong Bai, Chunlei Song, Yiyong Zhou, Xiuyun Cao
    Water.2020; 12(6): 1811.     CrossRef
  • Cyanobacterial blooms modify food web structure and interactions in western Lake Erie
    Ruth D. Briland, Joshua P. Stone, Manjunath Manubolu, Jiyoung Lee, Stuart A. Ludsin
    Harmful Algae.2020; 92: 101586.     CrossRef
  • Evaluation of alum-based water treatment residuals used to adsorb reactive phosphorus
    George Carleton, Teresa J. Cutright
    Water Science and Engineering.2020; 13(3): 181.     CrossRef
  • Exposure to microcystin among coastal residents during a cyanobacteria bloom in Florida
    Adam M. Schaefer, Luke Yrastorza, Nicole Stockley, Kathi Harvey, Nancy Harris, Robert Grady, James Sullivan, Malcolm McFarland, John S. Reif
    Harmful Algae.2020; 92: 101769.     CrossRef
  • Suppression of water-bloom cyanobacterium Microcystis aeruginosa by algaecide hydrogen peroxide maximized through programmed cell death
    Tingru Zhou, Huansheng Cao, Jie Zheng, Fei Teng, Xuejian Wang, Kai Lou, Xihui Zhang, Yi Tao
    Journal of Hazardous Materials.2020; 393: 122394.     CrossRef
  • Identifying the Influence of Land Cover and Human Population on Chlorophyll a Concentrations Using a Pseudo-Watershed Analytical Framework
    Luke Moslenko, Kevin Blagrave, Alessandro Filazzola, Arnab Shuvo, Sapna Sharma
    Water.2020; 12(11): 3215.     CrossRef
  • Impact of Hydrogen Peroxide and Copper Sulfate on the Delayed Release of Microcystin
    Arash Zamyadi, Katherine E. Greenstein, Caitlin M. Glover, Craig Adams, Erik Rosenfeldt, Eric C. Wert
    Water.2020; 12(4): 1105.     CrossRef
  • Concise Synthesis of (+)‐[13C4]‐Anatoxin‐a by Dynamic Kinetic Resolution of a Cyclic Iminium Ion
    Jacob J. Lacharity, Artur K. Mailyan, Karen Y. Chen, Armen Zakarian
    Angewandte Chemie International Edition.2020; 59(28): 11364.     CrossRef
  • Harnessing the biocatalytic potential of iron- and α-ketoglutarate-dependent dioxygenases in natural product total synthesis
    Christian R. Zwick, Hans Renata
    Natural Product Reports.2020; 37(8): 1065.     CrossRef
  • Environmental factors controlling phytoplankton dynamics in a large floodplain river with emphasis on cyanobacteria
    Shawn M. Giblin, Gretchen A. Gerrish
    River Research and Applications.2020; 36(7): 1137.     CrossRef
  • Identification and enumeration of cyanobacteria species using a deep neural network
    Sang-Soo Baek, JongCheol Pyo, Yakov Pachepsky, Yongeun Park, Mayzonee Ligaray, Chi-Yong Ahn, Young-Hyo Kim, Jong Ahn Chun, Kyung Hwa Cho
    Ecological Indicators.2020; 115: 106395.     CrossRef
  • Monitoring cyanobacteria occurrence in freshwater reservoirs using semi-analytical algorithms and orbital remote sensing
    Henrique Dantas Borges, Rejane Ennes Cicerelli, Tati de Almeida, Henrique L. Roig, Diogo Olivetti
    Marine and Freshwater Research.2020; 71(5): 569.     CrossRef
  • Microcystis toxin-mediated tumor promotion and toxicity lead to shifts in mouse gut microbiome
    Jiyoung Lee, Seungjun Lee, Alba Mayta, Igor Mrdjen, Christopher Weghorst, Thomas Knobloch
    Ecotoxicology and Environmental Safety.2020; 206: 111204.     CrossRef
  • Effect of Zinc on Microcystis aeruginosa UTEX LB 2385 and Its Toxin Production
    Jose L. Perez, Tinchun Chu
    Toxins.2020; 12(2): 92.     CrossRef
  • Ecogenomics of the Marine Benthic Filamentous Cyanobacterium Adonisia
    Juline M. Walter, Felipe H. Coutinho, Luciana Leomil, Paulo I. Hargreaves, Mariana E. Campeão, Verônica V. Vieira, Beatriz S. Silva, Giovana O. Fistarol, Paulo S. Salomon, Tomoo Sawabe, Sayaka Mino, Masashi Hosokawa, Hideaki Miyashita, Fumito Maruyama, Ma
    Microbial Ecology.2020; 80(2): 249.     CrossRef
  • Analysis of multiclass cyanotoxins (microcystins, anabaenopeptins, cylindrospermopsin and anatoxins) in lake waters using on-line SPE liquid chromatography high-resolution Orbitrap mass spectrometry
    Audrey Roy-Lachapelle, Sung Vo Duy, Gabriel Munoz, Quoc Tuc Dinh, Emmanuelle Bahl, Dana F. Simon, Sébastien Sauvé
    Analytical Methods.2019; 11(41): 5289.     CrossRef
  • Design, synthesis and algicides activities of thiourea derivatives as the novel scaffold aldolase inhibitors
    Shan Xiao, Lin Wei, Zongqin Hong, Li Rao, Yanliang Ren, Jian Wan, Lingling Feng
    Bioorganic & Medicinal Chemistry.2019; 27(5): 805.     CrossRef
  • Freshwater Supply to Metropolitan Shanghai: Issues of Quality from Source to Consumers
    Maotian Li, Jing Chen, Brian Finlayson, Zhongyuan Chen, Michael Webber, Jon Barnett, Mark Wang
    Water.2019; 11(10): 2176.     CrossRef
  • Harmful algal blooms and liver diseases: focusing on the areas near the four major rivers in South Korea
    Seungjun Lee, Jinnam Kim, Boseung Choi, Gijung Kim, Jiyoung Lee
    Journal of Environmental Science and Health, Part C.2019; 37(4): 356.     CrossRef
  • Characterization of Cyanophages in Lake Erie: Interaction Mechanisms and Structural Damage of Toxic Cyanobacteria
    Xuewen Jiang, Chanhee Ha, Seungjun Lee, Jinha Kwon, Hanna Cho, Tyler Gorham, Jiyoung Lee
    Toxins.2019; 11(8): 444.     CrossRef
  • Nutrients, eutrophication and harmful algal blooms along the freshwater to marine continuum
    Wayne A. Wurtsbaugh, Hans W. Paerl, Walter K. Dodds
    WIREs Water.2019;[Epub]     CrossRef
  • N-Halamine Derivatized Nanoparticles with Selective Cyanocidal Activity: Potential for Targeted Elimination of Harmful Cyanobacterial Blooms
    Giji Sadhasivam, Chen Gelber, Varda Zakin, Shlomo Margel, Orr H. Shapiro
    Environmental Science & Technology.2019; 53(15): 9160.     CrossRef
  • Dynamics of cyanobacteria blooms are linked to the hydrology of shallow Florida lakes and provide insight into possible impacts of climate change
    Karl E. Havens, Gaohua Ji, John R. Beaver, Rolland S. Fulton, Catherine E. Teacher
    Hydrobiologia.2019; 829(1): 43.     CrossRef
  • Microcystin-LR in peripheral circulation worsens the prognosis partly through oxidative stress in patients with hepatocellular carcinoma
    Feifei Lei, Xu Lei, Rugui Li, Huabing Tan
    Clinical and Experimental Medicine.2019; 19(2): 235.     CrossRef
  • Economic impact of harmful algal blooms on human health: a systematic review
    Christian R. C. Kouakou, Thomas G. Poder
    Journal of Water and Health.2019; 17(4): 499.     CrossRef
  • Influence of land use on trophic state indexes in northeast Brazilian river basins
    Olandia Ferreira Lopes, Felizardo Adenilson Rocha, Lucas Farias de Sousa, Daniela Mariano Lopes da Silva, Andrique Figueiredo Amorim, Ronaldo Lima Gomes, André Luiz Sampaio da Silva Junior, Raildo Mota de Jesus
    Environmental Monitoring and Assessment.2019;[Epub]     CrossRef
  • Harmful algal bloom and associated health risks among users of Lake Victoria freshwater: Ukerewe Island, Tanzania
    Geofrey J. Mchau, Edna Makule, Revocatus Machunda, Yun Yun Gong, Martin Kimanya
    Journal of Water and Health.2019; 17(5): 826.     CrossRef
  • Oriented Functionalization of Magnetic Beads with in Vivo Biotinylated Nanobodies for Rapid MALDI-TOF MS Ultrasensitive Quantitation of Microcystins in Biological Samples
    Macarena Pírez-Schirmer, Beatriz M. Brena, Gualberto González-Sapienza
    Analytical Chemistry.2019; 91(15): 9925.     CrossRef
  • Alternate succession of aggregate-forming cyanobacterial genera correlated with their attached bacteria by co-pathways
    Cong-Min Zhu, Jun-Yi Zhang, Rui Guan, Lauren Hale, Ning Chen, Ming Li, Zu-Hong Lu, Qin-Yu Ge, Yun-Feng Yang, Ji-Zhong Zhou, Ting Chen
    Science of The Total Environment.2019; 688: 867.     CrossRef
  • Identifying mechanisms of environmental decision-making: How ideology and geographic proximity influence public support for managing agricultural runoff to curb harmful algal blooms
    Tian Guo, Erik C. Nisbet, Jay F. Martin
    Journal of Environmental Management.2019; 241: 264.     CrossRef
  • What determines the public’s support for water quality regulations to mitigate agricultural runoff?
    Tian Guo, Devin Gill, Thomas H. Johengen, Bradley L. Cardinale
    Environmental Science & Policy.2019; 101: 323.     CrossRef
  • Relating Urban Biodiversity to Human Health With the ‘Holobiont’ Concept
    Jacob G. Mills, Justin D. Brookes, Nicholas J. C. Gellie, Craig Liddicoat, Andrew J. Lowe, Harrison R. Sydnor, Torsten Thomas, Philip Weinstein, Laura S. Weyrich, Martin F. Breed
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Biochemical and morphological biomarkers of the liver damage in the Neotropical fish, Piaractus mesopotamicus, injected with crude extract of cyanobacterium Radiocystis fernandoi
    Driele Tavares, Marcelo Gustavo Paulino, Ana Paula Terezan, João Batista Fernandes, Alessandra Giani, Marisa Narciso Fernandes
    Environmental Science and Pollution Research.2018; 25(16): 15349.     CrossRef
  • Algal Blooms and Cyanotoxins in Jordan Lake, North Carolina
    Daniel Wiltsie, Astrid Schnetzer, Jason Green, Mark Vander Borgh, Elizabeth Fensin
    Toxins.2018; 10(2): 92.     CrossRef
  • Heterologous expression and characterization of a novel serine protease from Daphnia magna: A possible role in susceptibility to toxic cyanobacteria
    Jacqueline Lange, Fatih Demir, Pitter F. Huesgen, Ulrich Baumann, Eric von Elert, Christian Pichlo
    Aquatic Toxicology.2018; 205: 140.     CrossRef
  • High-Spatial Resolution Monitoring of Phycocyanin and Chlorophyll-a Using Airborne Hyperspectral Imagery
    Jong Cheol Pyo, Mayzonee Ligaray, Yong Sung Kwon, Myoung-Hwan Ahn, Kyunghyun Kim, Hyuk Lee, Taegu Kang, Seong Been Cho, Yongeun Park, Kyung Hwa Cho
    Remote Sensing.2018; 10(8): 1180.     CrossRef
  • Seasonal Changes in Cyanobacterial Diversity of a Temperate Freshwater Paldang Reservoir (Korea) Explored by using Pyrosequencing
    Thangavelu Boopathi, Hui Wang, Man-Duck Lee, Jang-Seu Ki
    Environmental Biology Research.2018; 36(3): 424.     CrossRef
  • Magnetic activated carbon@ iron oxide@manganese oxide composite as an adsorbent for preconcentration of microcystin –LR in surface water, tap water, water and wastewater
    Geneath Pertunia Mashile, Anele Mpupa, Mogolodi K. Dimpe, Philiswa N. Nomngongo
    Environmental Nanotechnology, Monitoring & Management.2018; 10: 199.     CrossRef
  • Further Understanding of Degradation Pathways of Microcystin-LR by an Indigenous Sphingopyxis sp. in Environmentally Relevant Pollution Concentrations
    Qin Ding, Kaiyan Liu, Kai Xu, Rongli Sun, Juan Zhang, Lihong Yin, Yuepu Pu
    Toxins.2018; 10(12): 536.     CrossRef
  • Solar Photocatalysis Using Fixed-Film TiO2 for Microcystins from Colonial Microcystis aeruginosa
    Ciera M. Kinley, Maas Hendrikse, Alyssa J. Calomeni, Tyler D. Geer, John H. Rodgers
    Water, Air, & Soil Pollution.2018;[Epub]     CrossRef
  • Bloom-forming cyanobacteria and cyanotoxins in Argentina: A growing health and environmental concern
    Anabella Aguilera, Signe Haakonsson, María Victoria Martin, Graciela L. Salerno, Ricardo O. Echenique
    Limnologica.2018; 69: 103.     CrossRef
  • Short Total Synthesis of [15N5]-Cylindrospermopsins from 15NH4Cl Enables Precise Quantification of Freshwater Cyanobacterial Contamination
    Artur K. Mailyan, Joanna L. Chen, Weiwei Li, Arturo A. Keller, Shawn M. Sternisha, Brian G. Miller, Armen Zakarian
    Journal of the American Chemical Society.2018; 140(18): 6027.     CrossRef
  • Restoration of Nature or Special Interests? A Political Economy Analysis of the Four Major Rivers Restoration Project in South Korea
    Hyojong Song, Michael J. Lynch
    Critical Criminology.2018; 26(2): 251.     CrossRef
  • The Effect of Organic Carbon Addition on the Community Structure and Kinetics of Microcystin-Degrading Bacterial Consortia
    Derek Manheim, Yuen-Ming Cheung, Sunny Jiang
    Water.2018; 10(11): 1523.     CrossRef
  • Fresh produce and their soils accumulate cyanotoxins from irrigation water: Implications for public health and food security
    Seungjun Lee, Xuewen Jiang, Manjunath Manubolu, Ken Riedl, Stuart A. Ludsin, Jay F. Martin, Jiyoung Lee
    Food Research International.2017; 102: 234.     CrossRef
  • Chlorophyll-A Prediction of Lakes with Different Water Quality Patterns in China Based on Hybrid Neural Networks
    Xue Li, Jian Sha, Zhong-Liang Wang
    Water.2017; 9(7): 524.     CrossRef
  • Is the future of large shallow lakes blue-green? Comparing the response of a catchment-lake model chain to climate predictions
    Fabien Cremona, Sirje Vilbaste, Raoul-Marie Couture, Peeter Nõges, Tiina Nõges
    Climatic Change.2017; 141(2): 347.     CrossRef
  • Disturbance‐mediated Cyanobacterial Harmful Algal Bloom (CHAB) formation in a small Ohio reservoir
    Nathan Ruhl, Nicole Sullivan
    Lakes & Reservoirs: Science, Policy and Management for Sustainable Use.2017; 22(2): 161.     CrossRef
  • Natural Abenquines and Their Synthetic Analogues Exert Algicidal Activity against Bloom-Forming Cyanobacteria
    Amalyn Nain-Perez, Luiz Cláudio Almeida Barbosa, Célia Regina Álvares Maltha, Giuseppe Forlani
    Journal of Natural Products.2017; 80(4): 813.     CrossRef
  • Sustainable Methods for Decontamination of Microcystin in Water Using Cold Plasma and UV with Reusable TiO2 Nanoparticle Coating
    Xuewen Jiang, Seungjun Lee, Chulkyoon Mok, Jiyoung Lee
    International Journal of Environmental Research and Public Health.2017; 14(5): 480.     CrossRef
  • Cyanobacterial Toxins in Freshwater and Food: Important Sources of Exposure to Humans
    Jiyoung Lee, Seungjun Lee, Xuewen Jiang
    Annual Review of Food Science and Technology.2017; 8(1): 281.     CrossRef
  • Spatiotemporal variability and environmental factors of harmful algal blooms (HABs) over western Lake Erie
    Di Tian, Gengxin Xie, Jing Tian, Kuo-Hsin Tseng, C. K. Shum, Jiyoung Lee, Song Liang, Lucas J. Stal
    PLOS ONE.2017; 12(6): e0179622.     CrossRef
  • Host-genotype dependent gut microbiota drives zooplankton tolerance to toxic cyanobacteria
    Emilie Macke, Martijn Callens, Luc De Meester, Ellen Decaestecker
    Nature Communications.2017;[Epub]     CrossRef
  • A perspective of chemical treatment for cyanobacteria control toward sustainable freshwater development
    Jae-Hoon Huh, Ji-Whan Ahn
    Environmental Engineering Research.2017; 22(1): 1.     CrossRef
  • Alterations in transcription and protein expressions of HCC-related genes in HepG2 cells caused by microcystin-LR
    Xiaoyu Li, Xiangyang Zhang, Wenjie Xie, Chune Zhou, Yao Li, Xiuhua Zhang
    Toxicology in Vitro.2017; 40: 115.     CrossRef
  • Ten-year survey of cyanobacterial blooms in Ohio’s waterbodies using satellite remote sensing
    Tyler Gorham, Yuanyuan Jia, C.K. Shum, Jiyoung Lee
    Harmful Algae.2017; 66: 13.     CrossRef
  • Cyanobacterial Toxins of the Laurentian Great Lakes, Their Toxicological Effects, and Numerical Limits in Drinking Water
    Todd Miller, Lucas Beversdorf, Chelsea Weirich, Sarah Bartlett
    Marine Drugs.2017; 15(6): 160.     CrossRef
  • Como as cidades podem favorecer ou dificultar a promoção da saúde de seus moradores?
    Laís Fajersztajn, Mariana Veras, Paulo Hilário Nascimento Saldiva
    Estudos Avançados.2016; 30(86): 7.     CrossRef
  • A Rational Design, Synthesis, Biological Evaluation and Structure–Activity Relationship Study of Novel Inhibitors against Cyanobacterial Fructose-1,6-bisphosphate Aldolase
    Xinya Han, Xiuyun Zhu, Shuaihua Zhu, Lin Wei, Zongqin Hong, Li Guo, Haifeng Chen, Bo Chi, Yan Liu, Lingling Feng, Yanliang Ren, Jian Wan
    Journal of Chemical Information and Modeling.2016; 56(1): 73.     CrossRef
  • Understanding the key ecological traits of cyanobacteria as a basis for their management and control in changing lakes
    Evanthia Mantzouki, Petra M. Visser, Myriam Bormans, Bas W. Ibelings
    Aquatic Ecology.2016; 50(3): 333.     CrossRef
  • Health impacts from cyanobacteria harmful algae blooms: Implications for the North American Great Lakes
    Wayne W. Carmichael, Gregory L. Boyer
    Harmful Algae.2016; 54: 194.     CrossRef
  • Hyperspectral remote sensing of cyanobacterial pigments as indicators of the iron nutritional status of cyanobacteria-dominant algal blooms in eutrophic lakes
    Guangyu Chi, Jian Ma, Yi Shi, Xin Chen
    Ecological Indicators.2016; 71: 609.     CrossRef
  • Turbulence increases the risk of microcystin exposure in a eutrophic lake (Lake Taihu) during cyanobacterial bloom periods
    Jian Zhou, Boqiang Qin, Xiaoxia Han, Lin Zhu
    Harmful Algae.2016; 55: 213.     CrossRef
  • Toxic cyanobacteria and drinking water: Impacts, detection, and treatment
    Xuexiang He, Yen-Ling Liu, Amanda Conklin, Judy Westrick, Linda K. Weavers, Dionysios D. Dionysiou, John J. Lenhart, Paula J. Mouser, David Szlag, Harold W. Walker
    Harmful Algae.2016; 54: 174.     CrossRef
  • Anticancer compounds from cyanobacterium Lyngbya species: a review
    Shasank S. Swain, Rabindra N. Padhy, Pawan K. Singh
    Antonie van Leeuwenhoek.2015; 108(2): 223.     CrossRef
  • Cyanobacteria blooms and non-alcoholic liver disease: evidence from a county level ecological study in the United States
    Feng Zhang, Jiyoung Lee, Song Liang, CK Shum
    Environmental Health.2015;[Epub]     CrossRef
  • Effects of intermediate metabolite carboxylic acids of TCA cycle on Microcystis with overproduction of phycocyanin
    Shijie Bai, Jingcheng Dai, Ming Xia, Jing Ruan, Hehong Wei, Dianzhen Yu, Ronghui Li, Hongmei Jing, Chunyuan Tian, Lirong Song, Dongru Qiu
    Environmental Science and Pollution Research.2015; 22(7): 5531.     CrossRef
  • Detection of the cyanobacterial toxin, microcystin-LR, using a novel recombinant antibody-based optical-planar waveguide platform
    Caroline Murphy, Edwina Stack, Svetlana Krivelo, Daniel A. McPartlin, Barry Byrne, Charles Greef, Michael J. Lochhead, Greg Husar, Shauna Devlin, Christopher T. Elliott, Richard J. O’Kennedy
    Biosensors and Bioelectronics.2015; 67: 708.     CrossRef
  • Human Health-Related Ecosystem Services of Avian-Dense Coastal Wetlands Adjacent to a Western Lake Erie Swimming Beach
    Chris L. Rea, Michael S. Bisesi, William Mitsch, Rebecca Andridge, Jiyoung Lee
    EcoHealth.2015; 12(1): 77.     CrossRef
  • Impact of Environmental Factors on the Regulation of Cyanotoxin Production
    Thangavelu Boopathi, Jang-Seu Ki
    Toxins.2014; 6(7): 1951.     CrossRef
  • Neurotoxic action of microcystin-LR is reflected in the transcriptional stress response of Caenorhabditis elegans
    Nadine Saul, Shumon Chakrabarti, Stephen R. Stürzenbaum, Ralph Menzel, Christian E.W. Steinberg
    Chemico-Biological Interactions.2014; 223: 51.     CrossRef
  • Female zebrafish (Danio rerio) are more vulnerable than males to microcystin-LR exposure, without exhibiting estrogenic effects
    Qin Qiao, Wanjing Liu, Kang Wu, Ting Song, Jun Hu, Xiao Huang, Jing Wen, Liang Chen, Xuezhen Zhang
    Aquatic Toxicology.2013; 142-143: 272.     CrossRef
Journal Articles
Comparative Study of Olive Oil Mill Wastewater Treatment Using Free and Immobilized Coriolopsis polyzona and Pycnoporus coccineus
Mohamed Neifar , Atef Jaouani , María Jesús Martínez , Michel J. Penninckx
J. Microbiol. 2012;50(5):746-753.   Published online November 4, 2012
DOI: https://doi.org/10.1007/s12275-012-2079-4
  • 294 View
  • 0 Download
  • 6 Crossref
AbstractAbstract
The efficiency of the two white-rot fungi Pycnoporus coccineus and Coriolopsis polyzona in the Olive Oil Mill Wastewater (OOMW) treatment was investigated. Both fungi were active in the decolourisation and COD removal of OOMW at 50 g/L COD, but only the first fungus remains effective on the crude effluent (COD=100 g/L). Moreover P. coccineus was less affected by oxygen supplementation and exhibited a high tolerance to agitation in comparison to C. polyzona. However, it required a nitrogen supplementation to obtain faster and higher COD removal. To overcome the negative effect of agitation on fungi growth and efficiency, immobilisation of C. polyzona and P. coccineus in polyurethane foam was applied. The immobilized system showed better COD decreases during three consecutive batches without remarkable loss of performances. The results obtained in this study suggested that immobilized C. polyzona and especially immobilized P. coccineus might be applicable to a large scale for the removal colour and COD of OOMW.

Citations

Citations to this article as recorded by  
  • Microalgae-based bioremediation of olive mill wastewater: Technical and environmental evaluations using orange peel and orange peel-derived biochar
    Martina Lenzuni, Francesca Demichelis, Juan Felipe Basbus, Antonio Barbucci, Francesco Savorani, Tonia Tommasi, Alessandro Alberto Casazza
    Sustainable Materials and Technologies.2025; 43: e01338.     CrossRef
  • Detection Methods for Pine Wilt Disease: A Comprehensive Review
    Sana Tahir, Syed Shaheer Hassan, Lu Yang, Miaomiao Ma, Chenghao Li
    Plants.2024; 13(20): 2876.     CrossRef
  • Treatment of olive mill wastewater through employing sequencing batch reactor: performance and microbial diversity assessment
    Fatma Arous, Chadlia Hamdi, Souhir Kmiha, Nadia Khammassi, Amani Ayari, Mohamed Neifar, Tahar Mechichi, Atef Jaouani
    3 Biotech.2018;[Epub]     CrossRef
  • Immobilization of white rot fungi to carbohydrate-rich corn cob as a basis for tertiary treatment of secondarily treated pulp and paper mill wastewater
    Anlong Zhang, Guiqiu Wang, Guoli Gong, Jing Shen
    Industrial Crops and Products.2017; 109: 538.     CrossRef
  • Optimization of Anthraquinone Dyes Decolorization Conditions with Response Surface Methodology by Aspergillus
    Yufeng Ge, Bin Wei, Siyu Wang, Zhiguo Guo, Xiaolin Xu
    Korean Chemical Engineering Research.2015; 53(3): 327.     CrossRef
  • Deodorization of pig slurry and characterization of bacterial diversity using 16S rDNA sequence analysis
    Ok-Hwa Hwang, Sebastian Raveendar, Young-Ju Kim, Ji-Hun Kim, Tae-Hun Kim, Dong-Yoon Choi, Che Ok Jeon, Sung-Back Cho, Kyung-Tai Lee
    Journal of Microbiology.2014; 52(11): 918.     CrossRef
Flavobacterium cheonhonense sp. nov., Isolated from a Freshwater Reservoir
Siwon Lee , Jung-Hwan Oh , Hang-Yeon Weon , Tae-Young Ahn
J. Microbiol. 2012;50(4):562-566.   Published online July 21, 2012
DOI: https://doi.org/10.1007/s12275-012-1229-z
  • 405 View
  • 0 Download
  • 13 Crossref
AbstractAbstract PDF
A novel bacterium, designated strain ARSA-15T, was isolated from a freshwater sample collected from the Cheonho reservoir, Cheonan, Republic of Korea. The isolate was deepyellow pigment, Gram-negative, rod-shaped, non-motile, and catalase- and oxidase-positive. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate belongs to the genus Flavobacterium, and shared less than 97% sequence similarity with recognized Flavobacterium species. The novel species was able to grow at 10–37°C, pH 6.5–10.0, and in 0–0.5% (w/v) NaCl concentrations. Chemotaxonomically, iso-C15:1, iso-C15:0, and iso-C16:0 were observed to be the predominant cellular fatty acid, and menaquinone-6 (MK-6) was the predominant respiratory quinone. The major polar lipid patterns of strain ARSA-19T was phosphatidylethanolamine, unknown aminolipid (AL1 and AL2), and unidentified polar lipids (L1, L2, and L3). The genomic DNA G+C content of the isolate was 39.2 mol%. On the basis of polyphasic approach, strain ARSA-15T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium cheonhonense sp. nov. is proposed. The type strain is ARSA-15T (=KACC 14967T =KCTC 23180T =JCM 17064T).

Citations

Citations to this article as recorded by  
  • Flavobacterium mekongense sp. nov., isolated from the Mekong River in Thailand
    Chitwadee Phithakrotchanakoon, Supattra Kitikhun, Paopit Siriarchawatana, Piyanat Charoenyingcharoen, Sukanya Jeennor, Thanyakorn Nilsakha, Amonwan Chanpet, Thanat Vorajinda, Sermsiri Mayteeworakoon, Pattaraporn Yukphan, Supawadee Ingsriswang
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Description of Flavobacterium fructosi sp. nov., Flavobacterium xylosi sp. nov. and Flavobacterium zhouii sp. nov., three new members of the genus Flavobacterium
    Dou Han, Lei-Lei Yang, Yu-Hua Xin, Qing Liu
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Flavobacterium anseongense sp. nov. and Flavobacterium wongokense sp. nov., isolated from freshwater and freshwater soil in South Korea
    Jung-Hun Jo, Soon-Youl Lee, Se-Yoon Chun, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Comparative insight of pesticide transformations between river and wetland systems
    Daeho Kang, Hyebin Lee, Hyokwan Bae, Junho Jeon
    Science of The Total Environment.2023; 879: 163172.     CrossRef
  • Flavobacterium sedimenticola sp. nov., isolated from sediment
    Ningning Wu, Le Liu, Xueting Jiang, Ye Yuan, Dongmei Mao, Jiahui Shao, Jian He, Qirong Shen
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
    Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
    Journal of Microbiology.2022; 60(9): 890.     CrossRef
  • Flavobacterium silvisoli sp. nov., isolated from forest soil
    Dhiraj Kumar Chaudhary, Ram Hari Dahal, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(9): 2762.     CrossRef
  • Nocardioides suum sp. nov. isolated from the air environment in an indoor pig farm
    Siwon Lee, Wonseok Lee, Hyen-Mi Chung, Sangjung Park
    Journal of Microbiology.2017; 55(6): 417.     CrossRef
  • Flavobacterium paronense sp. nov., isolated from freshwater of an artificial vegetated island
    Yochan Joung, Heeyoung Kang, Haneul Kim, Tae-Su Kim, Ji-Hye Han, Seung Bum Kim, Tae-Seok Ahn, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology.2016; 66(1): 365.     CrossRef
  • Flavobacterium fulvum sp. nov., Flavobacterium pedocola sp. nov. and Flavobacterium humicola sp. nov., three new members of the family Flavobacteriaceae, isolated from soil
    Tuan Manh Nguyen, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2016; 66(8): 3108.     CrossRef
  • Flavobacterium buctense sp. nov., isolated from freshwater
    Xiao-Min Feng, Xu Tan, Li Jia, Ping-Ping Long, Lu Han, Jie Lv
    Archives of Microbiology.2015; 197(9): 1109.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology.2014; 64(Pt_1): 1.     CrossRef
  • Flavobacterium gyeonganense sp. nov., isolated from freshwater, and emended descriptions of Flavobacterium chungangense, Flavobacterium aquidurense, Flavobacterium tructae and Flavobacterium granuli
    Haneul Kim, Heeyoung Kang, Yochan Joung, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology.2014; 64(Pt_12): 4173.     CrossRef
Research Support, Non-U.S. Gov't
Effect of Natural Mediators on the Stability of Trametes trogii Laccase during the Decolourization of Textile Wastewaters
Rim Khlifi-Slama , Tahar Mechichi , Sami Sayadi , Abdelhafidh Dhouib
J. Microbiol. 2012;50(2):226-234.   Published online April 27, 2012
DOI: https://doi.org/10.1007/s12275-012-1421-1
  • 269 View
  • 0 Download
  • 22 Crossref
AbstractAbstract PDF
The purpose of the present study was to determine the effect of natural mediators on the stability of the Trametes trogii crude laccase in the process of decolourization of textile effluents. Acetosyringone allowed the highest wastewaters decolourization rate of 25%. At higher concentrations of acetosyringone, the relative activity of laccase decreased approximately by between 38% and 88% after 5 days of incubation. T. trogii laccase was strongly inactivated at 3 mM syringaldehyde, after 3 days of incubation. However, laccase activity is more stable in the presence of the vanillin and m-coumarate. The T. trogii growth on solid effluentbased- medium was examined and evaluated by measuring the colony diameter in cm. T. trogii was completely inhibited on 100:0 and 80:20 effluent:water solid medium, however, colony diameter reached 5 cm on 60:40 effluent:water solid medium after 13–14 days incubation. When the textile effluent was pre-treated with laccase and laccase-acetosyringone system, the colony diameter of 2 cm of T. trogii on 80:20 effluent:water solid medium was reached after 14 and 10 days of incubation respectively.

Citations

Citations to this article as recorded by  
  • An Economical Industrially Feasible Approach for Denim Biobleaching: Reusing of Laccase and Mediator for Multiple Cycles
    Sunena Jassal, Rahul Warmoota, Anupama Sharma, Sarita Sheoran, Deepak Kumar, Naveen Gupta
    Indian Journal of Microbiology.2025; 65(3): 1683.     CrossRef
  • Fabrication, characterization, and application of laccase-immobilized membranes for acetamiprid and diuron degradation
    Ahmet Ulu, Şeyma Akkurt, Emre Birhanlı, Aysel Alkan Uçkun, Miraç Uçkun, Özfer Yeşilada, Burhan Ateş
    International Journal of Biological Macromolecules.2024; 282: 136787.     CrossRef
  • Mechanism of norfloxacin transformation by horseradish peroxidase and various redox mediated by humic acid and microplastics
    Yifei Leng, Feiyu Liu, Huiping Cai, Fengyi Chang, Wen Xiong, Shushi Huang, Jun Wang
    Science of The Total Environment.2023; 858: 159528.     CrossRef
  • Hybrid electrocoagulation and laccase mediated treatment for efficient decolorization of effluent generated from textile industries
    Shweta Kalia, Vivek Dalvi, Vivek Kumar Nair, Saurabh Samuchiwal, Anushree Malik
    Environmental Research.2023; 228: 115868.     CrossRef
  • Biotechnological potential of fungi from a mangrove ecosystem: Enzymes, salt tolerance and decolorization of a real textile effluent
    Nigella Mendes De Paula, Krisle da Silva, Tatiane Brugnari, Charles Windson Isidoro Haminiuk, Giselle Maria Maciel
    Microbiological Research.2022; 254: 126899.     CrossRef
  • Investigation of Ochrobacter pseudintermedium ASMCS06 for Cleaner biodegradation and bioelectricity production
    Mira chares Subash, A.S. Maheshwari
    Cleaner Materials.2022; 6: 100149.     CrossRef
  • Recent developments of a co-immobilized laccase–mediator system: a review
    Yaohua Gu, Lin Yuan, Leina Jia, Ping Xue, Huiqin Yao
    RSC Advances.2021; 11(47): 29498.     CrossRef
  • Removal of trace organic contaminants by enzymatic membrane bioreactors: Role of membrane retention and biodegradation
    Muhammad Bilal Asif, Jingwei Hou, William E. Price, Vicki Chen, Faisal I. Hai
    Journal of Membrane Science.2020; 611: 118345.     CrossRef
  • Rapid catalytic oxidation of As(iii) to As(v) using aBacillusspore–2,2,6,6-tetramethylpiperidine-1-oxyl system
    Yuqing Qin, Fei Peng, Yonggang Hu
    Green Chemistry.2019; 21(9): 2286.     CrossRef
  • Optimization of a laccase-mediator system with natural redox-mediating compounds for pesticide removal
    Larine Kupski, Gabriela M. Salcedo, Sergiane S. Caldas, Taiana D. de Souza, Eliana B. Furlong, Ednei G. Primel
    Environmental Science and Pollution Research.2019; 26(5): 5131.     CrossRef
  • The development of CotA mediator cocktail system for dyes decolorization
    S. Luo, T. Xie, Z. Liu, F. Sun, G. Wang
    Journal of Applied Microbiology.2018; 124(5): 1164.     CrossRef
  • Linking Enzymatic Oxidative Degradation of Lignin to Organics Detoxification
    Xiaolu Wang, Bin Yao, Xiaoyun Su
    International Journal of Molecular Sciences.2018; 19(11): 3373.     CrossRef
  • Simultaneous production of laccase and degradation of bisphenol A with Trametes versicolor cultivated on agricultural wastes
    Shengquan Zeng, Jie Zhao, Liming Xia
    Bioprocess and Biosystems Engineering.2017; 40(8): 1237.     CrossRef
  • Degradation of Trace Organic Contaminants by a Membrane Distillation—Enzymatic Bioreactor
    Muhammad Asif, Faisal Hai, Jinguo Kang, Jason Van de Merwe, Frederic Leusch, Kazuo Yamamoto, William Price, Long Nghiem
    Applied Sciences.2017; 7(9): 879.     CrossRef
  • Degradation of the herbicide isoproturon by laccase-mediator systems
    Shengquan Zeng, Xueli Qin, Liming Xia
    Biochemical Engineering Journal.2017; 119: 92.     CrossRef
  • Degradation of Dyes by Laccase
    Alper Akkaya, Emine Erdogan Ozseker, Hatice Ardag Akdogan
    Analytical Letters.2016; 49(6): 790.     CrossRef
  • Spectroscopic and computational characterization of laccases and their substrate radical intermediates
    Rebecca Pogni, Maria Camilla Baratto, Adalgisa Sinicropi, Riccardo Basosi
    Cellular and Molecular Life Sciences.2015; 72(5): 885.     CrossRef
  • Optimization of Anthraquinone Dyes Decolorization Conditions with Response Surface Methodology by Aspergillus
    Yufeng Ge, Bin Wei, Siyu Wang, Zhiguo Guo, Xiaolin Xu
    Korean Chemical Engineering Research.2015; 53(3): 327.     CrossRef
  • The effects of mediator and granular activated carbon addition on degradation of trace organic contaminants by an enzymatic membrane reactor
    Luong N. Nguyen, Faisal I. Hai, William E. Price, Frederic D.L. Leusch, Felicity Roddick, Hao H. Ngo, Wenshan Guo, Saleh F. Magram, Long D. Nghiem
    Bioresource Technology.2014; 167: 169.     CrossRef
  • An enzymatic approach to develop a lignin-based adhesive for wool floor coverings
    E. Aracri, C. Díaz Blanco, T. Tzanov
    Green Chemistry.2014; 16(5): 2597.     CrossRef
  • Enhancement of trace organic contaminant degradation by crude enzyme extract from Trametes versicolor culture: Effect of mediator type and concentration
    Luong N. Nguyen, Faisal I. Hai, Jinguo Kang, Frederic D.L. Leusch, Felicity Roddick, Saleh F. Magram, William E. Price, Long D. Nghiem
    Journal of the Taiwan Institute of Chemical Engineers.2014; 45(4): 1855.     CrossRef
  • A spectroscopic characterization of a phenolic natural mediator in the laccase biocatalytic reaction
    Andrea Martorana, Lorenzo Sorace, Harry Boer, Rafael Vazquez-Duhalt, Riccardo Basosi, Maria Camilla Baratto
    Journal of Molecular Catalysis B: Enzymatic.2013; 97: 203.     CrossRef
Journal Article
NOTE] Arenimonas aquaticum sp. nov., a Member of the Gammaproteobacterium, Isolated from a Freshwater Reservoir
A-Ram Kim , Siwon Lee , Kyudong Han , Tae-Young Ahn
J. Microbiol. 2012;50(2):354-358.   Published online April 27, 2012
DOI: https://doi.org/10.1007/s12275-012-1301-8
  • 201 View
  • 0 Download
  • 6 Scopus
AbstractAbstract PDF
A novel bacterial strain, designated NA-09T, was isolated from a freshwater sample collected from the Cheonho reservoir, Republic of Korea. Colonies were creamy-white pigmented, translucent, and circular with convex shape. The isolate was Gram-staining negative, strictly aerobic, motile, and rod-shaped. The 16S rRNA gene sequence analysis revealed that strain NA-09T belonged to the genus Arenimonas and showed the highest sequence similarities with Arenimonas malthae CC-JY-1T (95.4%), A. oryziterrae YC6267T (94.9%), A. composti P2-12-1T (94.8%), and A. donghaensis H03-R19T (94.1%). The major fatty acids were iso-C16:0 (20.8%), iso-C15:0 (16.9%), summed feature 1 (13.2%), and iso-C16:1ω7c alcohol (10.2%). The major isoprenoid quinone of the isolate was ubiquionone-8. On the basis of the data from the polyphasic characterization, the strain NA-09T represents a novel species, for which the name Arenimonas aquaticum sp. nov. is proposed (type strain NA-09T =KACC 14663T =NBRC 106550T).
Research Support, Non-U.S. Gov'ts
Host Species as a Strong Determinant of the Intestinal Microbiota of Fish Larvae
Xuemei Li , Yuhe Yu , Weisong Feng , Qingyun Yan , Yingchun Gong
J. Microbiol. 2012;50(1):29-37.   Published online February 27, 2012
DOI: https://doi.org/10.1007/s12275-012-1340-1
  • 432 View
  • 0 Download
  • 105 Crossref
AbstractAbstract PDF
We investigated the influence of host species on intestinal microbiota by comparing the gut bacterial community structure of four cohabitating freshwater fish larvae, silver carp, grass carp, bighead carp, and blunt snout bream, using denaturing gradient gel electrophoresis (DGGE) of the amplified 16S and 18S rRNA genes. Similarity clustering indicated that the intestinal microbiota derived from these four fish species could be divided into four groups based on 16S rRNA gene similarity, whereas the eukaryotic 18S rRNA genes showed no distinct groups. The water sample from the shared environment contained microbiota of an independent group as indicated by both 16S and 18S rRNA genes segments. The bacterial community structures were visualized using rank-abundance plots fitted with linear regression models.
Results
showed that the intestinal bacterial evenness was significantly different between species (P<0.05) and between species and the water sample (P<0.01). Thirty-five relatively dominant bands in DGGE patterns were sequenced and grouped into five major taxa: Proteobacteria (26), Actinobacteria (5), Bacteroidetes (1), Firmicutes (2), and Cyanobacterial (1). Six eukaryotes were detected by sequencing 18S rRNA genes segments. The present study suggests that the intestines of the four fish larvae, although reared in the same environment, contained distinct bacterial populations, while intestinal eukaryotic microorganisms were almost identical.

Citations

Citations to this article as recorded by  
  • Combined effects of glutamine dipeptide, plant essential oils, and Astragalus polysaccharide on growth performance, antioxidant capacity, immune function, and intestinal health in large yellow croaker (Larimichthys crocea)
    Xiang Zhu, Yu Zhan, Yanting Chen, Ying Hang, Chaoxin Wang, Shuichao Mi, Jun Zhang, Minqiu Sun, Lihua Yuan, Manshan Lin, Saiya Liu, Bin Luo, Dong Yu, Xueming Hua, Chuanming Zhong
    Aquaculture Reports.2026; 46: 103283.     CrossRef
  • Comparative metagenomics of tropical reef fishes show conserved core gut functions across hosts and diets with diet-related functional gene enrichments
    Derek G. Wu, Cassandra R. Harris, Katie M. Kalis, Malique Bowen, Jennifer F. Biddle, Ibrahim F. Farag, Knut Rudi
    Applied and Environmental Microbiology.2025;[Epub]     CrossRef
  • Intestinal Microeukaryotes in Fish: A Concise Review of an Underexplored Component of the Microbiota
    Jesús Salvador Olivier Guirado-Flores, Estefanía Garibay-Valdez, Diana Medina-Félix, Francisco Vargas-Albores, Luis Rafael Martínez-Córdova, Yuniel Mendez-Martínez, Marcel Martínez-Porchas
    Microbiology Research.2025; 16(7): 158.     CrossRef
  • Gut Microbial Composition of Cyprinella lutrensis (Red Shiner) and Notropis stramineus (Sand Shiner): Insights from Wild Fish Populations
    Krista Starr, Federica Montesanto, Esther Perisho, Nirosh Aluthge, Mark Pegg, Samodha C. Fernando
    Microbial Ecology.2024;[Epub]     CrossRef
  • Ginger polysaccharide alleviates the effects of acute exposure to carbonate in crucian carp (Carassius auratus) by regulating immunity, intestinal microbiota, and intestinal metabolism
    Xianwei Meng, Liang Luo, Zhigang Zhao, Shihui Wang, Rui Zhang, Kun Guo
    Ecotoxicology and Environmental Safety.2024; 273: 116127.     CrossRef
  • Identification of the regulatory roles of water qualities on the spatio-temporal dynamics of microbiota communities in the water and fish guts in the Heilongjiang River
    Hongyu Jin, Lei Li, Wanqiao Lu, Zepeng Zhang, Yue Xing, Di Wu
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Microbiomes of Tilapia Culture Systems: Composition, Affecting Factors, and Future Perspectives
    Jonabel Huavas, Jasmine Heyse, Ruben Props, Jérôme Delamare-Deboutteville, Colin Shelley, Christyn Bailey
    Aquaculture Research.2024;[Epub]     CrossRef
  • Regulation of lipid metabolism by gut microbiota in aquatic animals
    Shangong Wu, Meijing Pan, Ziye Zan, Ivan Jakovlić, Weishan Zhao, Hong Zou, Einar Ringø, Guitang Wang
    Reviews in Aquaculture.2024; 16(1): 34.     CrossRef
  • High-altitude Adaptation of Xizang Plateau Frogs, <italic>Nanorana parkeri</italic> from a Perspective of the Gut Microbiome
    Xuejing ZHANG, Yonggang NIU, Shengkang MEN, Xiaolong TANG, Kenneth B. STOREY, Qiang CHEN
    Asian Herpetological Research.2024; 15(4): 214.     CrossRef
  • Effects of salinity stress on the growth performance, health status, and intestinal microbiota of juvenile Micropterus salmoides
    Shukui Sun, Cuiping Gong, Chaoyue Deng, Haoran Yu, Da Zheng, Lei Wang, Junlong Sun, Feibiao Song, Jian Luo
    Aquaculture.2023; 576: 739888.     CrossRef
  • Responses of the gastrointestinal microbiota to the protein metabolism of pond-cultured Japanese flounder (Paralichthys olivaceus)
    Yan Jiang, Jun Wang, Lin Lin, Yongjiang Xu, Aijun Cui, Kaijie Wang, Xuezhou Liu, Bin Wang
    Frontiers in Marine Science.2023;[Epub]     CrossRef
  • Effects of plant-based proteins and handling stress on intestinal mucus microbiota in rainbow trout
    Marvin Suhr, Finn-Thorbjörn Fichtner-Grabowski, Henrike Seibel, Corinna Bang, Andre Franke, Carsten Schulz, Stéphanie C. Hornburg
    Scientific Reports.2023;[Epub]     CrossRef
  • Gut microbiota, host genetics and phenotypes in aquatic animals: A review
    Quanxin Gao, Peimin Liu, Yang Li, Dawei Song, Wei Long, Zefeng Wang, Shaokui Yi, Linhua Jiang
    Aquaculture Reports.2023; 31: 101648.     CrossRef
  • Povidone iodine exposure alters the immune response and microbiota of the gill and skin in koi carp, Cyprinus carpio
    R. Zhang, G.T. Wu, J.Y. Zhu, X.W. Wang, L.L. Liu, H.J. Li, H. Zhu
    Aquaculture.2023; 563: 738926.     CrossRef
  • Gut microbiota of an Amazonian fish in a heterogeneous riverscape: integrating genotype, environment, and parasitic infections
    Nicolas Leroux, Francois-Etienne Sylvain, Aleicia Holland, Adalberto Luis Val, Nicolas Derome, John M. Chaston, Mikhail Solovyev
    Microbiology Spectrum.2023;[Epub]     CrossRef
  • Trophic level and proteobacteria abundance drive antibiotic resistance levels in fish from coastal New England
    Benjamin J. Korry, Peter Belenky
    Animal Microbiome.2023;[Epub]     CrossRef
  • Gut microbiota changes in Hexagrammos otakii during development and association with diets based on metagenomics sequencing
    Ying Fan, Youhong Wang, Li Li, Xiaolu Wang, Xiaoqing Yu, La Xu, Shuxian Wang, Fawen Hu, Chunlei Gai, Jing Diao, Haibin Ye, Fusheng Hou, Xintian Liu
    Aquaculture Reports.2023; 33: 101881.     CrossRef
  • Partial Substitution of Fish Meal with Soy Protein Concentrate on Growth, Liver Health, Intestinal Morphology, and Microbiota in Juvenile Large Yellow Croaker (Larimichthys crocea)
    Xuexi Wang, Hongjie Luo, Dejuan Wang, Yunzong Zheng, Wenbo Zhu, Weini Zhang, Zhengbang Chen, Xinhua Chen, Jianchun Shao, Yanjiao Zhang
    Aquaculture Nutrition.2023; 2023: 1.     CrossRef
  • Characterization of Host-Associated Microbiota and Isolation of Antagonistic Bacteria from Greater Amberjack (Seriola dumerili, Risso, 1810) Larvae
    Vasiliki Paralika, Fotini Kokou, Stelios Karapanagiotis, Pavlos Makridis
    Microorganisms.2023; 11(8): 1889.     CrossRef
  • The Active Microbiota of the Eggs and the Nauplii of the Pacific Blue Shrimp Litopenaeus stylirostris Partially Shaped by a Potential Vertical Transmission
    Carolane Giraud, Nolwenn Callac, Viviane Boulo, Jean-Sébastien Lam, Dominique Pham, Nazha Selmaoui-Folcher, Nelly Wabete
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Supplementing artemisinin positively influences growth, antioxidant capacity, immune response, gut health and disease resistance against Vibrio parahaemolyticus in Litopenaeus vannamei fed cottonseed protein concentrate meal diets
    Hongyu Liu, Guofeng Chen, Lixian Li, Zhixuan Lin, Beiping Tan, Xiaohui Dong, Qihui Yang, Shuyan Chi, Shuang Zhang, Xiaoqiu Zhou
    Fish & Shellfish Immunology.2022; 131: 105.     CrossRef
  • Does Exposure of Broodstock to Dietary Soybean Meal Affect Its Utilization in the Offspring of Zebrafish (Danio rerio)?
    Karolina Kwasek, Samuel Patula, Michal Wojno, Frank Oliaro, Chrissy Cabay, Lee J. Pinnell
    Animals.2022; 12(12): 1475.     CrossRef
  • Characterization and Dynamics of the Gut Microbiota in Rice Fishes at Different Developmental Stages in Rice-Fish Coculture Systems
    Ling Tao, Jie Chai, Hongyi Liu, Wenhao Huang, Yan Zou, Mengling Wu, Buqing Peng, Qiong Wang, Keyi Tang
    Microorganisms.2022; 10(12): 2373.     CrossRef
  • Dietary supplementation with microalgae enhances the zebrafish growth performance by modulating immune status and gut microbiota
    Ke Ma, Siwei Chen, Yue Wu, Yiting Ma, Haochen Qiao, Jianhua Fan, Haizhen Wu
    Applied Microbiology and Biotechnology.2022; 106(2): 773.     CrossRef
  • Potential Role of Gastrointestinal Microbiota in Growth Regulation of Yellowtail Kingfish Seriola lalandi in Different Stocking Densities
    Yan Jiang, Chaoyong Yu, Yongjiang Xu, Xuezhou Liu, Aijun Cui, Bin Wang, Heting Zhou
    Fishes.2022; 7(4): 154.     CrossRef
  • Starvation and refeeding influence the growth, biochemical index, intestinal microbiota, and transcriptomic profiles of golden pompano Trachinotus ovatus (Linnaeus 1758)
    Bo Liu, Hua-Yang Guo, Bao-Suo Liu, Nan Zhang, Jing-Wen Yang, Liang Guo, Shi-Gui Jiang, Dian-Chang Zhang
    Frontiers in Marine Science.2022;[Epub]     CrossRef
  • Comparative analysis of the gut microbiota in bighead carp under different culture patterns
    Mingkun Luo, Rui An, Jianjun Fu, Shunpeng Wan, Wenbin Zhu, Lanmei Wang, Zaijie Dong
    Journal of Applied Microbiology.2022; 132(2): 1357.     CrossRef
  • Northern pike (Esox lucius) young‐of‐year gut microbiota and associations with wetland nursery water microbial communities in the St. Lawrence River
    Benjamin D. Gallo, John M. Farrell, Brian F. Leydet
    Aquaculture, Fish and Fisheries.2022; 2(5): 384.     CrossRef
  • Gut microbiota differs between two cold-climate lizards distributed in thermally different regions
    Jun-Qiong Chen, Lu-Wen Zhang, Ru-Meng Zhao, Hai-Xia Wu, Long-Hui Lin, Peng Li, Hong Li, Yan-Fu Qu, Xiang Ji
    BMC Ecology and Evolution.2022;[Epub]     CrossRef
  • Bacteriome Structure, Function, and Probiotics in Fish Larviculture: The Good, the Bad, and the Gaps
    Nuno Borges, Tina Keller-Costa, Gracinda M.M. Sanches-Fernandes, António Louvado, Newton C.M. Gomes, Rodrigo Costa
    Annual Review of Animal Biosciences.2021; 9(1): 423.     CrossRef
  • Comparative analysis of bacterial communities of water and intestines of silver carp (Hypophthalmichthys molitrix) and bighead carp (H. nobilis) reared in aquaculture pond systems
    Liu-Jiang Meng, Yuan Zhang, Xin-Xin Li, Jun-Heng Liu, Bin Wen, Jian-Zhong Gao, Zai-Zhong Chen
    Aquaculture.2021; 534: 736334.     CrossRef
  • Food intake and its effect on the species and abundance of intestinal flora in colorectal cancer and healthy individuals
    Weitao Shen, Jiayu Sun, Zhiyang Li, Fen Yao, Kaihuang Lin, Xiaoyang Jiao
    The Korean Journal of Internal Medicine.2021; 36(3): 568.     CrossRef
  • Opportunities for microbiome research to enhance farmed freshwater fish quality and production
    Lara Parata, Jesmond Sammut, Suhelen Egan
    Reviews in Aquaculture.2021; 13(4): 2027.     CrossRef
  • A systematic review of advances in intestinal microflora of fish
    Chang Liu, Li-Ping Zhao, Yan-Qin Shen
    Fish Physiology and Biochemistry.2021; 47(6): 2041.     CrossRef
  • Gut Microbiota of Five Sympatrically Farmed Marine Fish Species in the Aegean Sea
    Eleni Nikouli, Alexandra Meziti, Evangelia Smeti, Efthimia Antonopoulou, Eleni Mente, Konstantinos Ar. Kormas
    Microbial Ecology.2021; 81(2): 460.     CrossRef
  • Physiological parameters and gut microbiome associated with different dietary lipid levels in hybrid yellow catfish (Tachysurus fulvidraco♀× Pseudobagrus vachellii♂)
    Haojun Zhu, Jun Qiang, Jie He, Yifan Tao, Jingwen Bao, Pao Xu
    Comparative Biochemistry and Physiology Part D: Genomics and Proteomics.2021; 37: 100777.     CrossRef
  • Host development overwhelms environmental dispersal in governing the ecological succession of zebrafish gut microbiota
    Fanshu Xiao, Wengen Zhu, Yuhe Yu, Zhili He, Bo Wu, Cheng Wang, Longfei Shu, Xinghao Li, Huaqun Yin, Jianjun Wang, Philippe Juneau, Xiafei Zheng, Yongjie Wu, Juan Li, Xiaojuan Chen, Dongwei Hou, Zhijian Huang, Jianguo He, Guohuan Xu, Liwei Xie, Jie Huang,
    npj Biofilms and Microbiomes.2021;[Epub]     CrossRef
  • NextGen molecular barcoding of larval grouper diet in an extensive green-water pond system
    Lachlan Peter Dennis, Kelli Anderson, Matthew Wylie, Vu Van In, Josephine Nocillado, Abigail Elizur
    Aquaculture.2021; 531: 735971.     CrossRef
  • Veteriner Sahada Güncel Mikrobiyota Kavramı
    Emre KÜLLÜK, Duygu DALGIN
    Etlik Veteriner Mikrobiyoloji Dergisi.2021; 32(1): 77.     CrossRef
  • Dynamic changes in microbial community structure in farming pond water and their effect on the intestinal microbial community profile in juvenile common carp (Cyprinus carpio L.)
    Xiaojun Jing, Shengyan Su, Chengfeng Zhang, Jian Zhu, Yiran Hou, Zhixun Li, Xingli Yang, Xiaolin Zhou, Xugang He, Brian Pelekelo Munganga, Yongkai Tang, Pao Xu
    Genomics.2021; 113(4): 2547.     CrossRef
  • Co-modulation of Liver Genes and Intestinal Microbiome of Largemouth Bass Larvae (Micropterus salmoides) During Weaning
    Liulan Zhao, Kuo He, Jie Luo, Junlong Sun, Lei Liao, Xiaohong Tang, Qiao Liu, Song Yang
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Use of next generation sequencing to compare simple habitat and species level differences in the gut microbiota of an invasive and native freshwater fish species
    Benjamin D. Gallo, John M. Farrell, Brian Leydet
    PeerJ.2020; 8: e10237.     CrossRef
  • Host-derived Probiotics for Finfish Aquaculture
    C M A Caipang, I Suharman, A L Avillanosa, V T Bargoyo
    IOP Conference Series: Earth and Environmental Science.2020; 430(1): 012026.     CrossRef
  • Physiological and gut microbiome changes associated with low dietary protein level in genetically improved farmed tilapia (GIFT,Oreochromis niloticus) determined by 16S rRNA sequence analysis
    Hao‐jun Zhu, Jun Qiang, Yi‐fan Tao, Tlou Kevin Ngoepe, Jing‐wen Bao, De‐ju Chen, Pao Xu
    MicrobiologyOpen.2020;[Epub]     CrossRef
  • Variations and Potential Factors of Gut Prokaryotic Microbiome During Spawning Migration in Coilia nasus
    Cong-ping Ying, Min Jiang, Lei You, Jin-hao Tan, Yan-ping Yang, Yin-ping Wang, Kai Liu
    Current Microbiology.2020; 77(10): 2802.     CrossRef
  • Fish Gut Microbiome: A Primer to an Emerging Discipline in the Fisheries Sciences
    Benjamin D Gallo, John M Farrell, Brian F Leydet
    Fisheries.2020; 45(5): 271.     CrossRef
  • Differences in the gut microbiota between Cercopithecinae and Colobinae in captivity
    Zongjin Huan, Yongfang Yao, Jianqiu Yu, Hongwei Chen, Meirong Li, Chaojun Yang, Bo Zhao, Qingyong Ni, Mingwang Zhang, Meng Xie, Huailiang Xu
    Journal of Microbiology.2020; 58(5): 367.     CrossRef
  • Comparative analysis of gut microbiota diversity in endangered, economical, and common freshwater mussels using 16S rRNA gene sequencing
    Xiongjun Liu, Yanling Cao, Shan Ouyang, Xiaoping Wu
    Ecology and Evolution.2020; 10(21): 12015.     CrossRef
  • Microbiota characteristics in Sebastes schlegelii intestine in early life stages
    Yan Jiang, Xuezhou Liu, Yongjiang Xu, Bao Shi, Bin Wang
    Journal of Oceanology and Limnology.2020; 38(1): 275.     CrossRef
  • Intestinal microbial profiling of grass carp (Ctenopharyngodon idellus) challenged with Aeromonas hydrophila
    Lei Zhou, Jian-fu Wei, Ke-tao Lin, Lian Gan, Jun-jie Wang, Ji-jia Sun, Xiao-peng Xu, Li Liu, Xian-de Huang
    Aquaculture.2020; 524: 735292.     CrossRef
  • Metagenomic Shotgun Analyses Reveal Complex Patterns of Intra- and Interspecific Variation in the Intestinal Microbiomes of Codfishes
    Even Sannes Riiser, Thomas H. A. Haverkamp, Srinidhi Varadharajan, Ørnulf Borgan, Kjetill S. Jakobsen, Sissel Jentoft, Bastiaan Star, Christopher A. Elkins
    Applied and Environmental Microbiology.2020;[Epub]     CrossRef
  • Spatiotemporal successions of shrimp gut microbial colonization: high consistency despite distinct species pool
    Jinbo Xiong, Lixia Xuan, Weina Yu, Jinyong Zhu, Qiongfen Qiu, Jiong Chen
    Environmental Microbiology.2019; 21(4): 1383.     CrossRef
  • Intestinal microbiota of salmonids and its changes upon introduction of soy proteins to fish feed
    Svetlana V. Kononova, Dmitry V. Zinchenko, Tatyana A. Muranova, Nataliya A. Belova, Anatoly I. Miroshnikov
    Aquaculture International.2019; 27(2): 475.     CrossRef
  • Shotgun metagenomics offers novel insights into taxonomic compositions, metabolic pathways and antibiotic resistance genes in fish gut microbiome
    Anuj Tyagi, Balwinder Singh, Naveen K. Billekallu Thammegowda, Niraj K. Singh
    Archives of Microbiology.2019; 201(3): 295.     CrossRef
  • Host selectively contributes to shaping intestinal microbiota of carnivorous and omnivorous fish
    Kristian Daly, Jennifer Kelly, Andrew W. Moran, Robert Bristow, Iain S. Young, Andrew R. Cossins, David Bravo, Soraya P. Shirazi-Beechey
    The Journal of General and Applied Microbiology.2019; 65(3): 129.     CrossRef
  • Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage‐specific microbial signatures
    Jep Lokesh, Viswanath Kiron, Detmer Sipkema, Jorge M.O. Fernandes, Truls Moum
    MicrobiologyOpen.2019;[Epub]     CrossRef
  • Gut Microbiota and Energy Homeostasis in Fish
    Robyn Lisa Butt, Helene Volkoff
    Frontiers in Endocrinology.2019;[Epub]     CrossRef
  • Algae and Clay Water Additives Differentially Impact Survival and Microbial Community Structure in Sablefish (Anoplopoma fimbria) Rearing Tanks
    Melissa L. Pierce, Jonathan S. F. Lee, Emily Dodd, Rachel S. Poretsky
    Frontiers in Marine Science.2019;[Epub]     CrossRef
  • The effect of diet on the structure of gut bacterial community of sympatric pair of whitefishes (Coregonus lavaretus): one story more
    Mikhail M. Solovyev, Elena N. Kashinskaya, Nickolai A. Bochkarev, Karl B. Andree, Evgeniy Simonov
    PeerJ.2019; 7: e8005.     CrossRef
  • Comparison of the gut microbiota of Rana amurensis and Rana dybowskii under natural winter fasting conditions
    Qing Tong, Xiao-peng Du, Zong-fu Hu, Li-yong Cui, Jia Bie, Qian-zhen Zhang, Jian-hua Xiao, Yu Lin, Hong-bin Wang
    FEMS Microbiology Letters.2019;[Epub]     CrossRef
  • Screening of intestinal peristalsis-promoting probiotics based on a zebrafish model
    Youyou Lu, Junxue Zhang, Huaxi Yi, Zhe Zhang, Lanwei Zhang
    Food & Function.2019; 10(4): 2075.     CrossRef
  • Reduced fishmeal allowance with constant protein input for juvenile channel catfish Ictalurus punctatus
    Guang-Zhen Jiang, Zhuo-Qin Li, Hong-Yan Tian, Er-Teng Jia, Chao Xu, Wen-Bin Liu
    Aquaculture Nutrition.2019; 25(1): 154.     CrossRef
  • Intestinal Microbiota in Large Yellow Croaker, Larimichthys crocea, at Different Ages
    Na Wei, Chengcheng Wang, Shijun Xiao, Weiqing Huang, Mao Lin, Qingpi Yan, Ying Ma
    Journal of the World Aquaculture Society.2018; 49(1): 256.     CrossRef
  • Assessment of gut microbiota in different developmental stages of Malaysian Mahseer (Tor tambroides)
    Mohamad Zaimin Mohd Nosi, Sharifah Noor Emilia Syed Jamil Fadaak, Muhd Danish Daniel Muhammad, Shumpei Iehata
    Aquaculture Research.2018; 49(9): 2977.     CrossRef
  • Comparison of Channel Catfish and Blue Catfish Gut Microbiota Assemblages Shows Minimal Effects of Host Genetics on Microbial Structure and Inferred Function
    Jacob W. Bledsoe, Geoffrey C. Waldbieser, Kelly S. Swanson, Brian C. Peterson, Brian C. Small
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Characterization of the gut microbiota in early life stages of pikeperch Sander lucioperca
    T. Dulski, Z. Zakęś, S. Ciesielski
    Journal of Fish Biology.2018; 92(1): 94.     CrossRef
  • Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates
    Zhimin Zhang, Dapeng Li
    Microbiome.2018;[Epub]     CrossRef
  • Fish Gut Microbiome: Current Approaches and Future Perspectives
    Chandni Talwar, Shekhar Nagar, Rup Lal, Ram Krishan Negi
    Indian Journal of Microbiology.2018; 58(4): 397.     CrossRef
  • Progress in fish gastrointestinal microbiota research
    An R. Wang, Chao Ran, Einar Ringø, Zhi G. Zhou
    Reviews in Aquaculture.2018; 10(3): 626.     CrossRef
  • Intestinal microbiome and its potential functions in bighead carp (Aristichthys nobilis) under different feeding strategies
    Xuemei Li, Yongjiu Zhu, Einar Ringø, Xuge Wang, Jinling Gong, Deguo Yang
    PeerJ.2018; 6: e6000.     CrossRef
  • The variation profile of intestinal microbiota in blunt snout bream (Megalobrama amblycephala) during feeding habit transition
    Jin Wei, Xianwu Guo, Han Liu, Yuanyuan Chen, Weimin Wang
    BMC Microbiology.2018;[Epub]     CrossRef
  • Comparative analysis on microbial community associated with different gastrointestinal regions of wild northern snakehead Channa argus Cantor, 1842
    Shuyan Miao, Chenze Zhao, Jinyu Zhu, Mingzhu Pan
    Journal of Oceanology and Limnology.2018; 36(2): 450.     CrossRef
  • How Can We Define “Optimal Microbiota?”: A Comparative Review of Structure and Functions of Microbiota of Animals, Fish, and Plants in Agriculture
    Wakako Ikeda-Ohtsubo, Sylvia Brugman, Craig H. Warden, Johanna M. J. Rebel, Gert Folkerts, Corné M. J. Pieterse
    Frontiers in Nutrition.2018;[Epub]     CrossRef
  • Intestinal microbiota of healthy and unhealthy Atlantic salmon Salmo salar L. in a recirculating aquaculture system
    Chun Wang, Guoxiang Sun, Shuangshuang Li, Xian Li, Ying Liu
    Journal of Oceanology and Limnology.2018; 36(2): 414.     CrossRef
  • Age-Related Variations in Intestinal Microflora of Free-Range and Caged Hens
    Yizhe Cui, Qiuju Wang, Shengjun Liu, Rui Sun, Yaqiang Zhou, Yue Li
    Frontiers in Microbiology.2017;[Epub]     CrossRef
  • Changes in the gut microbiome of the Chinese mitten crab (Eriocheir sinensis) in response to White spot syndrome virus (WSSV) infection
    Z F Ding, M J Cao, X S Zhu, G H Xu, R L Wang
    Journal of Fish Diseases.2017; 40(11): 1561.     CrossRef
  • Comparative profiling of microbial community of three economically important fishes reared in sea cages under tropical offshore environment
    M.K. Rasheeda, Vijaya Raghavan Rangamaran, Senthilkumar Srinivasan, Sendhil Kumar Ramaiah, Rajaprabhu Gunasekaran, Santhanakumar Jaypal, Dharani Gopal, Kirubagaran Ramalingam
    Marine Genomics.2017; 34: 57.     CrossRef
  • High Spatial and Temporal Variations of Microbial Community along the Southern Catfish Gastrointestinal Tract: Insights into Dynamic Food Digestion
    Zhimin Zhang, Dapeng Li, Mohamed M. Refaey, Weitong Xu
    Frontiers in Microbiology.2017;[Epub]     CrossRef
  • Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change
    Cheng-Yu Chen, Po-Cheng Chen, Francis Cheng-Hsuan Weng, Grace Tzun-Wen Shaw, Daryi Wang, Sanjay B Jadhao
    PLOS ONE.2017; 12(7): e0181427.     CrossRef
  • Multi-Omics Analysis Reveals a Correlation between the Host Phylogeny, Gut Microbiota and Metabolite Profiles in Cyprinid Fishes
    Tongtong Li, Meng Long, Huan Li, François-Joël Gatesoupe, Xujie Zhang, Qianqian Zhang, Dongyue Feng, Aihua Li
    Frontiers in Microbiology.2017;[Epub]     CrossRef
  • Coupling metagenomics with cultivation to select host-specific probiotic micro-organisms for subtropical aquaculture
    J. Cui, M. Xiao, M. Liu, Z. Wang, F. Liu, L. Guo, H. Meng, H. Zhang, J. Yang, D. Deng, S. Huang, Y. Ma, C. Liu
    Journal of Applied Microbiology.2017; 123(5): 1274.     CrossRef
  • Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development
    Xinghao Li, Li Zhou, Yuhe Yu, Jiajia Ni, Wenjie Xu, Qingyun Yan
    Microbial Ecology.2017; 74(1): 239.     CrossRef
  • DNA extraction protocols may influence biodiversity detected in the intestinal microbiome: a case study from wild Prussian carp,Carassius gibelio
    Elena N. Kashinskaya, Karl B. Andree, Evgeniy P. Simonov, Mikhail M. Solovyev, Julian Marchesi
    FEMS Microbiology Ecology.2017; 93(2): fiw240.     CrossRef
  • A review of intestinal microbes in grass carpCtenopharyngodon idellus(Valenciennes)
    Ngoc Tuan Tran, Gui-Tang Wang, Shan-Gong Wu
    Aquaculture Research.2017; 48(7): 3287.     CrossRef
  • Standardizing the microbiota of fish used in research
    I N Vatsos
    Laboratory Animals.2017; 51(4): 353.     CrossRef
  • The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
    Han Liu, Xianwu Guo, Ravi Gooneratne, Ruifang Lai, Cong Zeng, Fanbin Zhan, Weimin Wang
    Scientific Reports.2016;[Epub]     CrossRef
  • Effects of host genetics and environment on egg‐associated microbiotas in brown trout (Salmo trutta)
    Laetitia G. E. Wilkins, Luca Fumagalli, Claus Wedekind
    Molecular Ecology.2016; 25(19): 4930.     CrossRef
  • Ontogenetic Characterization of the Intestinal Microbiota of Channel Catfish through 16S rRNA Gene Sequencing Reveals Insights on Temporal Shifts and the Influence of Environmental Microbes
    Jacob W. Bledsoe, Brian C. Peterson, Kelly S. Swanson, Brian C. Small, John F. Rawls
    PLOS ONE.2016; 11(11): e0166379.     CrossRef
  • The influence of weight and gender on intestinal bacterial community of wild largemouth bronze gudgeon (Coreius guichenoti, 1874)
    Xuemei Li, Qingyun Yan, Einar Ringø, Xingbing Wu, Yongfeng He, Deguo Yang
    BMC Microbiology.2016;[Epub]     CrossRef
  • Environmental filtering decreases with fish development for the assembly of gut microbiota
    Qingyun Yan, Jinjin Li, Yuhe Yu, Jianjun Wang, Zhili He, Joy D. Van Nostrand, Megan L. Kempher, Liyou Wu, Yaping Wang, Lanjie Liao, Xinghao Li, Shu Wu, Jiajia Ni, Chun Wang, Jizhong Zhou
    Environmental Microbiology.2016; 18(12): 4739.     CrossRef
  • A new view of the fish gut microbiome: Advances from next-generation sequencing
    Mahdi Ghanbari, Wolfgang Kneifel, Konrad J. Domig
    Aquaculture.2015; 448: 464.     CrossRef
  • Analysis of Rhizosphere Soil Bacterial Communities on Seonginbong, Ulleungdo Island
    Yoon-Jong Nam, Hyeokjun Yoon, Hyun Kim, Jong-Guk Kim
    Journal of Life Science.2015; 25(3): 323.     CrossRef
  • Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh
    Andrea M. Larsen, Stephen A. Bullard, Matthew Womble, Covadonga R. Arias
    Microbial Ecology.2015; 70(2): 534.     CrossRef
  • Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes
    Laura Baldo, Joan Lluís Riera, Ave Tooming-Klunderud, M. Mar Albà, Walter Salzburger, Diego Fontaneto
    PLOS ONE.2015; 10(5): e0127462.     CrossRef
  • Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua)
    Ingrid Bakke, Eivind Coward, Tom Andersen, Olav Vadstein
    Environmental Microbiology.2015; 17(10): 3914.     CrossRef
  • Comparative Analysis of the Intestinal Bacterial Communities in Different Species of Carp by Pyrosequencing
    Tongtong Li, Meng Long, François-Joël Gatesoupe, Qianqian Zhang, Aihua Li, Xiaoning Gong
    Microbial Ecology.2015; 69(1): 25.     CrossRef
  • Effects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense)
    Tzong-Der Tzeng, Yueh-Yang Pao, Po-Cheng Chen, Francis Cheng-Hsuan Weng, Wen Dar Jean, Daryi Wang, Gaofeng Qiu
    PLOS ONE.2015; 10(7): e0132860.     CrossRef
  • Sorption and degradation of triclosan in sediments and its effect on microbes
    Xiaolong Huang, Chenxi Wu, Hongjuan Hu, Yuhe Yu, Jiantong Liu
    Ecotoxicology and Environmental Safety.2015; 116: 76.     CrossRef
  • Intestinal bacterial community structure differs between healthy and inflamed intestines in Atlantic salmon (Salmo salar L.)
    Felipe E. Reveco, Margareth Øverland, Odd H. Romarheim, Liv T. Mydland
    Aquaculture.2014; 420-421: 262.     CrossRef
  • The Colonization Dynamics of the Gut Microbiota in Tilapia Larvae
    Christos Giatsis, Detmer Sipkema, Hauke Smidt, Johan Verreth, Marc Verdegem, Pikul Jiravanichpaisal
    PLoS ONE.2014; 9(7): e103641.     CrossRef
  • Do the intestinal microbiotas differ between paddlefish (Polyodon spathala ) and bighead carp (Aristichthys nobilis ) reared in the same pond?
    X.M. Li, Y.J. Zhu, Q.Y. Yan, E. Ringø, D.G. Yang
    Journal of Applied Microbiology.2014; 117(5): 1245.     CrossRef
  • Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits
    J. Li, J. Ni, J. Li, C. Wang, X. Li, S. Wu, T. Zhang, Y. Yu, Q. Yan
    Journal of Applied Microbiology.2014; 117(6): 1750.     CrossRef
  • Probiotics in aquaculture: a current assessment
    Tania Pérez‐Sánchez, Imanol Ruiz‐Zarzuela, Ignacio de Blas, José L. Balcázar
    Reviews in Aquaculture.2014; 6(3): 133.     CrossRef
  • Gut Microbiota Contributes to the Growth of Fast-Growing Transgenic Common Carp (Cyprinus carpio L.)
    Xuemei Li, Qingyun Yan, Shouqi Xie, Wei Hu, Yuhe Yu, Zihua Hu, Kostas Bourtzis
    PLoS ONE.2013; 8(5): e64577.     CrossRef
  • Bacterial Diversity in the Guts of Sea Cucumbers (Apostichopus japonicus) and Shrimps (Litopenaeus vannamei) Investigated with Tag-Encoded 454 Pyrosequencing of 16S rRNA Genes
    Eun Soo Noh, Young-Sam Kim, Dong-Hyun Kim, Kyoung-Ho Kim
    The Korean Journal of Microbiology.2013; 49(3): 237.     CrossRef
Stratified Distribution of Nutrients and Extremophile Biota within Freshwater Ice Covering the Surface of Lake Baikal
Nina A. Bondarenko , Olga I. Belykh , Ludmila P. Golobokova , Olga V. Artemyeva , Natalia F. Logacheva , Irina V. Tikhonova , Irina A. Lipko , Tatyana Ya. Kostornova , Valentina V. Parfenova , Tamara V. Khodzher , Young-Gun Zo
J. Microbiol. 2012;50(1):8-16.   Published online February 27, 2012
DOI: https://doi.org/10.1007/s12275-012-1251-1
  • 229 View
  • 0 Download
  • 25 Crossref
AbstractAbstract PDF
Biological entities and gradients of selected chemicals within the seemingly barren ice layers covering Lake Baikal were investigated. Ice cores 40–68 cm long were obtained from inshore and offshore sites of Southern Lake Baikal during the cold period of a year (March-April) in 2007 and 2008. In microscopic observations of the melted ice, both algae and bacteria were found in considerable numbers (>103 cells/L and >104 cells/ml, respectively). Among all organisms found, diatom was generally the most predominant taxon in the ice. Interestingly, both planktonic and benthic algae were present in considerable numbers (2–4×104 cells/L). Dominant phototrophic picoplankton were comprised of small green algae of various taxa and cyanobacteria of Synechococcus and Cyanobium. The bacterial community consisted mostly of short rod and cocci cells, either freeliving or aggregated. Large numbers of yeast-like cells and actinomycete mycelium were also observed. Concentrations of silica, phosphorus, and nitrate were low by an order of magnitude where biota was abundant. The profile of the ice could be interpreted as vertical stratification of nutrients and biomass due to biological activities. Therefore, the organisms in the ice were regarded to maintain high activity while thriving under freezing conditions. Based on the results, it was concluded that the freshwater ice covering the surface of Lake Baikal is considerably populated by extremophilic microorganisms that actively metabolize and form a detritus food chain in the unique large freshwater ecosystem of Lake Baikal.

Citations

Citations to this article as recorded by  
  • A comparison of phytoplankton development in Lake Baikal, Siberia, and Rybinsk Reservoir, Volga River, European Russia, using stability indices
    Natalya Mineeva, Nina Bondarenko
    Journal of Great Lakes Research.2025; 51(1): 102493.     CrossRef
  • Reduced snow and increased nutrients show enhanced ice‐associated photoautotrophic growth using a modified experimental under‐ice design
    Lesley B. Knoll, Benton Fry, Nicole M. Hayes, Hailey M. Sauer
    Limnology and Oceanography.2024; 69(1): 203.     CrossRef
  • Genomic Insights into the Bactericidal and Fungicidal Potential of Bacillus mycoides b12.3 Isolated in the Soil of Olkhon Island in Lake Baikal, Russia
    Maria N. Romanenko, Anton E. Shikov, Iuliia A. Savina, Fedor M. Shmatov, Anton A. Nizhnikov, Kirill S. Antonets
    Microorganisms.2024; 12(12): 2450.     CrossRef
  • Features of the Under-Ice Development of Phytoplankton in Northern Lakes
    A. N. Sharov, N. A. Berezina, A. A. Maximov, O. B. Maximova
    Inland Water Biology.2024; 17(1): 100.     CrossRef
  • Features of the under ice development of phytoplankton in northern lakes
    A. N. Sharov, N. A. Berezina, A. A. Maximov, O. B. Maximova
    Биология внутренних вод.2024;[Epub]     CrossRef
  • Changes in Phyto- and Zooplankton under the Climatic Shifts and Anthropogenic Load (Lake Baikal, Russia)
    N. A. Bondarenko, I. V. Tomberg, O. G. Pen’kova, N. G. Sheveleva
    Биология внутренних вод.2023; (6): 727.     CrossRef
  • Abundant production of dimethylsulfoniopropionate as a cryoprotectant by freshwater phytoplanktonic dinoflagellates in ice-covered Lake Baikal
    Kei Toda, Vladimir Obolkin, Shin-Ichi Ohira, Kentaro Saeki
    Communications Biology.2023;[Epub]     CrossRef
  • Structural Changes of Phyto- and Zooplankton under the Influence of Climate Change and Anthropogenic Load (Lake Baikal, Russia)
    N. A. Bondarenko, I. V. Tomberg, O. G. Pen’kova, N. G. Sheveleva
    Inland Water Biology.2023; 16(6): 955.     CrossRef
  • Hydrobiological characteristic of small lakes in northern Karelia during the ice-covered period
    A.A. Maximov, N.A. Berezina, L.F. Litvinchuk, A.N. Sharov, O.B. Maximova, V.V. Smirnov, N.V. Usov
    Proceedings of the Zoological Institute RAS.2023; 327(3): 451.     CrossRef
  • Microeukaryotic Communities of the Long-Term Ice-Covered Freshwater Lakes in the Subarctic Region of Yakutia, Russia
    Yuri Galachyants, Yulia Zakharova, Maria Bashenkhaeva, Darya Petrova, Liubov Kopyrina, Yelena Likhoshway
    Diversity.2023; 15(3): 454.     CrossRef
  • Two New Species, Mallomonas baicalensis sp. nov. and M. grachevii sp. nov. (Synurales Chrysophyceae), Found under the Ice of Lake Baikal
    Anna Bessudova, Alena Firsova, Diana Hilkhanova, Mikhail Makarov, Maria Sakirko, Maria Bashenkhaeva, Igor Khanaev, Yulia Zakharova, Yelena Likhoshway
    Water.2023; 15(12): 2250.     CrossRef
  • Long-term trends in diatom diversity and palaeoproductivity: a 16 000-year multidecadal record from Lake Baikal, southern Siberia
    Anson W. Mackay, Vivian A. Felde, David W. Morley, Natalia Piotrowska, Patrick Rioual, Alistair W. R. Seddon, George E. A. Swann
    Climate of the Past.2022; 18(2): 363.     CrossRef
  • Analysis of the State of Biological Communities in a Continental Water Body using Hydrooptical Characteristics
    G. V. Vinokurova, I. A. Sutorikhin, A. A. Kolomeytsev, I. M. Frolenkov
    Inland Water Biology.2021; 14(2): 159.     CrossRef
  • The Lake Ice Continuum Concept: Influence of Winter Conditions on Energy and Ecosystem Dynamics
    E. Cavaliere, I. B. Fournier, V. Hazuková, G. P. Rue, S. Sadro, S. A. Berger, J. B. Cotner, H. A. Dugan, S. E. Hampton, N. R. Lottig, B. C. McMeans, T. Ozersky, S. M. Powers, M. Rautio, C. M. O'Reilly
    Journal of Geophysical Research: Biogeosciences.2021;[Epub]     CrossRef
  • Under-Ice Microalgae and Algae of the Interstitial Icy Water Functioning in Lake Baikal Littoral Zone
    N. A. Bondarenko, I. I. Rusanov, S. M. Chernitsyna, O. V. Shubenkova, N. V. Pimenov, T. I. Zemskaya
    Microbiology.2020; 89(3): 337.     CrossRef
  • Interconnection of bacterial and phytoplanktonic communities with hydrochemical parameters from ice and under-ice water in coastal zone of Lake Baikal
    Yu. S. Bukin, N. A. Bondarenko, I. I. Rusanov, N. V. Pimenov, S. V. Bukin, T. V. Pogodaeva, S. M. Chernitsyna, O. V. Shubenkova, V. G. Ivanov, A. S. Zakharenko, T. I. Zemskaya
    Scientific Reports.2020;[Epub]     CrossRef
  • Celebrating limnology in Siberia: commemorating the 90th anniversary of the Limnological Institute in Irkutsk, Russia
    Marianne V. Moore, Masumi Yamamuro
    Limnology.2020; 21(1): 1.     CrossRef
  • Recent changes in the spring microplankton of Lake Baikal, Russia
    N.A. Bondarenko, T. Ozersky, L.A. Obolkina, I.V. Tikhonova, E.G. Sorokovikova, M.V. Sakirko, S.A. Potapov, V.V. Blinov, A.A. Zhdanov, O.I. Belykh
    Limnologica.2019; 75: 19.     CrossRef
  • The unique methodological challenges of winter limnology
    Benjamin D. Block, Blaize A. Denfeld, Jason D. Stockwell, Giovanna Flaim, Hans‐Peter F. Grossart, Lesley B. Knoll, Dominique B. Maier, Rebecca L. North, Milla Rautio, James A. Rusak, Steve Sadro, Gesa A. Weyhenmeyer, Andrew J. Bramburger, Donn K. Branstra
    Limnology and Oceanography: Methods.2019; 17(1): 42.     CrossRef
  • Ecology of Estuarine Basins of Southern Baikal Small Rivers According to Springtime Chemical and Microbiological Investigation
    T. I. Zemskaya, A. S. Zakharenko, I. I. Rusanov, S. V. Bukin, T. V. Pogodaeva, O. G. Netsvetaeva, V. G. Ivanov, Yu. R. Shtykova, N. V. Pimenov
    Microbiology.2019; 88(6): 689.     CrossRef
  • Genomes of Novel Microbial Lineages Assembled from the Sub-Ice Waters of Lake Baikal
    Pedro J. Cabello-Yeves, Tamara I. Zemskaya, Riccardo Rosselli, Felipe H. Coutinho, Alexandra S. Zakharenko, Vadim V. Blinov, Francisco Rodriguez-Valera, Harold L. Drake
    Applied and Environmental Microbiology.2018;[Epub]     CrossRef
  • Ecology under lake ice
    Stephanie E. Hampton, Aaron W. E. Galloway, Stephen M. Powers, Ted Ozersky, Kara H. Woo, Ryan D. Batt, Stephanie G. Labou, Catherine M. O'Reilly, Sapna Sharma, Noah R. Lottig, Emily H. Stanley, Rebecca L. North, Jason D. Stockwell, Rita Adrian, Gesa A. We
    Ecology Letters.2017; 20(1): 98.     CrossRef
  • Heating up a cold subject: prospects for under-ice plankton research in lakes
    S. E. Hampton, M. V. Moore, T. Ozersky, E. H. Stanley, C. M. Polashenski, A. W. E. Galloway
    Journal of Plankton Research.2015; 37(2): 277.     CrossRef
  • Freshwater ice as habitat: partitioning of phytoplankton and bacteria between ice and water in central European reservoirs
    Robert M.L. McKay, Ondrej Prášil, Libor Pechar, Evelyn Lawrenz, Mark J. Rozmarynowycz, George S. Bullerjahn
    Environmental Microbiology Reports.2015; 7(6): 887.     CrossRef
  • Cryophyton of Lake Kalach, Omsk oblast
    O. P. Bazhenova, L. V. Korzhova
    Contemporary Problems of Ecology.2014; 7(1): 45.     CrossRef
Effects of Phosphate Addition on Biofilm Bacterial Communities and Water Quality in Annular Reactors Equipped with Stainless Steel and Ductile Cast Iron Pipes
Hyun-Jung Jang , Young-June Choi , Hee-Myong Ro , Jong-Ok Ka
J. Microbiol. 2012;50(1):17-28.   Published online February 27, 2012
DOI: https://doi.org/10.1007/s12275-012-1040-x
  • 218 View
  • 0 Download
  • 34 Scopus
AbstractAbstract PDF
The impact of orthophosphate addition on biofilm formation and water quality was studied in corrosion-resistant stainless steel (STS) pipe and corrosion-susceptible ductile cast iron (DCI) pipe using cultivation and culture-independent approaches. Sample coupons of DCI pipe and STS pipe were installed in annular reactors, which were operated for 9 months under hydraulic conditions similar to a domestic plumbing system. Addition of 5 mg/L of phosphate to the plumbing systems, under low residual chlorine conditions, promoted a more significant growth of biofilm and led to a greater rate reduction of disinfection by-products in DCI pipe than in STS pipe. While the level of THMs (trihalomethanes) increased under conditions of low biofilm concentration, the levels of HAAs (halo acetic acids) and CH (chloral hydrate) decreased in all cases in proportion to the amount of biofilm. It was also observed that chloroform, the main species of THM, was not readily decomposed biologically and decomposition was not proportional to the biofilm concentration; however, it was easily biodegraded after the addition of phosphate. Analysis of the 16S rDNA sequences of 102 biofilm isolates revealed that Proteobacteria (50%) was the most frequently detected phylum, followed by Firmicutes (10%) and Actinobacteria (2%), with 37% of the bacteria unclassified. Bradyrhizobium was the dominant genus on corroded DCI pipe, while Sphingomonas was predominant on non-corroded STS pipe. Methylobacterium and Afipia were detected only in the reactor without added phosphate. PCR-DGGE analysis showed that the diversity of species in biofilm tended to increase when phosphate was added regardless of the pipe material, indicating that phosphate addition upset the biological stability in the plumbing systems.
Flavobacterium koreense sp. nov., Flavobacterium chungnamense sp. nov., and Flavobacterium cheonanense sp. nov., Isolated from a Freshwater Reservoir
Siwon Lee , Hang-Yeon Weon , Soo-Jin Kim , Tae-Young Ahn
J. Microbiol. 2011;49(3):387-392.   Published online June 30, 2011
DOI: https://doi.org/10.1007/s12275-011-0382-0
  • 421 View
  • 1 Download
  • 16 Crossref
AbstractAbstract PDF
Taxonomic studies were performed on three strains isolated from Cheonho reservoir in Cheonan, Korea. The isolates were Gram-negative, aerobic, rod-shaped, non-motile, catalase-positive, and oxidase-positive. Colonies on solid media were cream-yellow, smooth, shiny, and circular. Phylogenetic analysis of the 16S rRNA gene sequences revealed that these strains belong to the genus Flavobacterium. The strains shared 98.6-99.4% sequence similarity with each other and showed less than 97% similarity with members of the genus Flavobacterium with validly published names. The DNA-DNA hybridization results confirmed the separate genomic status of strains ARSA-42T, ARSA-103T, and ARSA-108T. The isolates contained menaquinone-6 as the predominant menaquinone and iso-C15:0, iso-C15:0 3-OH, iso-C15:1 G, and iso-C16:0 3-OH as the major fatty acids. The genomic DNA G+C content of the isolates were 31.4-33.2 mol%. According to the phenotypic and genotypic data, these organisms are classified as representative of three novel species in the genus Flavobacterium, and the name Flavobacterium koreense sp. nov. (strain ARSA-42T =KCTC 23182T =JCM 17066T =KACC 14969T), Flavobacterium chungnamense sp. nov. (strain ARSA-103T =KCTC 23183T =JCM 17068T =KACC 14971T), and Flavobacterium cheonanense sp. nov. (strain ARSA-108T =KCTC 23184T =JCM 17069T =KACC 14972T) are proposed.

Citations

Citations to this article as recorded by  
  • Flavobacterium anseongense sp. nov. and Flavobacterium wongokense sp. nov., isolated from freshwater and freshwater soil in South Korea
    Jung-Hun Jo, Soon-Youl Lee, Se-Yoon Chun, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Comparative genomics and evolutionary insights into zeaxanthin biosynthesis in two novel Flavobacterium species
    Ye Zhuo, Chun-Zhi Jin, Chang-Soo Lee, Kee-Sun Shin, Hyung-Gwan Lee
    BMC Microbiology.2025;[Epub]     CrossRef
  • Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
    Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
    Journal of Microbiology.2022; 60(9): 890.     CrossRef
  • Microbial community origin and fate through a rural wastewater treatment plant
    Kymberly Newton, Emmanuel Gonzalez, Frederic E. Pitre, Nicholas J. B. Brereton
    Environmental Microbiology.2022; 24(5): 2516.     CrossRef
  • Bacterial and Archaeal Assemblages from Two Size Fractions in Submarine Groundwater Near an Industrial Zone
    Xiaogang Chen, Qi Ye, Jinzhou Du, Jing Zhang
    Water.2019; 11(6): 1261.     CrossRef
  • Flavobacterium ardleyense sp. nov., isolated from Antarctic soil
    Ming-Yang Zhou, Xi-Ying Zhang, Xiao-Deng Yang, Yan-Jiao Zhang, Hai-Lun He, Daling Ning
    International Journal of Systematic and Evolutionary Microbiology.2017; 67(10): 3996.     CrossRef
  • Flavobacterium soyangense sp. nov., a psychrotolerant bacterium, isolated from an oligotrophic freshwater lake
    Gi Gyun Nam, Yochan Joung, Miri Park, Suhyun Kim, Hyoung Tae Jeon, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2017; 67(7): 2440.     CrossRef
  • Flavobacterium lutivivi sp. nov., isolated from activated sludge
    Qingqing Feng, Lu Han, Yuichi Nogi, Qing Hong, Jie Lv
    International Journal of Systematic and Evolutionary Microbiology .2016; 66(3): 1394.     CrossRef
  • Flavobacterium buctense sp. nov., isolated from freshwater
    Xiao-Min Feng, Xu Tan, Li Jia, Ping-Ping Long, Lu Han, Jie Lv
    Archives of Microbiology.2015; 197(9): 1109.     CrossRef
  • Flavobacterium maotaiense sp. nov., isolated from freshwater
    Qingqing Feng, Yuan Gao, Yuichi Nogi, Xu Tan, Lu Han, Yali Zhang, Jie Lv
    International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_1): 171.     CrossRef
  • Phylogeny of Flavobacteria Group Isolated from Freshwater Using Multilocus Sequencing Analysis
    Seyoung Mun, Jungnam Lee, Siwon Lee, Kyudong Han, Tae-Young Ahn
    Genomics & Informatics.2013; 11(4): 272.     CrossRef
  • Flavobacterium aquaticum sp. nov., a member of the Bacteroidetes isolated from a freshwater reservoir
    Siwon Lee, Jungnam Lee, Tae-Young Ahn
    Journal of Microbiology.2013; 51(3): 283.     CrossRef
  • Flavobacterium aciduliphilum sp. nov., isolated from freshwater, and emended description of the genus Flavobacterium
    Ji Young Kang, Jeesun Chun, Kwang Yeop Jahng
    International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_5): 1633.     CrossRef
  • Flavobacterium dankookense sp. nov., isolated from a freshwater reservoir, and emended descriptions of Flavobacterium cheonanense , F. chungname
    Siwon Lee, Hang-Yeon Weon, Kyudong Han, Tae-Young Ahn
    International Journal of Systematic and Evolutionary Microbiology .2012; 62(Pt_10): 2378.     CrossRef
  • Flavobacterium cheonhonense sp. nov., isolated from a freshwater reservoir
    Siwon Lee, Jung-Hwan Oh, Hang-Yeon Weon, Tae-Young Ahn
    Journal of Microbiology.2012; 50(4): 562.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published

    International Journal of Systematic and Evolutionary Microbiology .2012; 62(1): 1.     CrossRef
Aquimarina litoralis sp. nov., Isolated from a Coastal Seawater
You-Sung Oh , Hyung-Yeel Kahng , Young Sun Lee , Byoung-Jun Yoon , Sang-Bin Lim , Jae Sung Jung , Duck-Chul Oh , Dong-Heon Lee
J. Microbiol. 2010;48(4):433-437.   Published online August 20, 2010
DOI: https://doi.org/10.1007/s12275-010-0088-8
  • 275 View
  • 0 Download
  • 12 Crossref
AbstractAbstract PDF
A strictly aerobic, red-pigmented, non-motile, catalase- and oxidase-positive, Gram-staining-negative bacterium, designated strain CNURIC011T, was isolated from seawater off the coast of Jeju Island in Korea. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain CNURIC011T belongs to the genus Aquimarina in the family Flavobacteriaceae. 16S rRNA gene sequence analysis revealed that the close relatives of the novel strain are Aquimarina latercula ATCC 23177T, Aquimarina marcrocephali JAMB N27T, Aquimarina intermedia KMM 6258T, Aquimarina muelleri KMM 6020T, and Aquimarina brevivitae SMK-19T, with sequence similarities of 97.6, 96.6, 96.0, 95.6, and 94.2%, respectively. DNA-DNA hybridization revealed that the level of relatedness between strain CNURIC011T and Aquimarina latercula ATCC 23177T (=KCTC 2912T) was 4.9%. The DNA G+C content was 35.8 mol% and the major respiratory quinone was MK-6. The major fatty acids were iso-C15:0 (14.9%), C15:0 (13.9%), iso-C17:0 3-OH (12.6%), iso-C15:1 G (7.3%), and iso-C17:1 ω9c (7.2%). On the basis of phenotypic, phylogenetic, and genotypic data, strain CNURIC011T represents a novel species within the genus Aquimarina, for which the name Aquimarina litoralis sp. nov. is proposed. The type strain is CNURIC011T (=KCTC 22614T =JCM 15974T).

Citations

Citations to this article as recorded by  
  • Validation List no. 222. Valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Insights into the Antimicrobial Activities and Metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) Species from the Rare Marine Biosphere
    Sandra Godinho Silva, Patrícia Paula, José Paulo da Silva, Dalila Mil-Homens, Miguel Cacho Teixeira, Arsénio Mendes Fialho, Rodrigo Costa, Tina Keller-Costa
    Marine Drugs.2022; 20(7): 423.     CrossRef
  • Insights into the genomic repertoire of Aquimarina litoralis CCMR20, a symbiont of coral Mussismilia braziliensis
    Tooba Varasteh, Diogo Tschoeke, Gizele Garcia, Arthur Silva Lima, Ana Paula B. Moreira, Cristiane Thompson, Fabiano Thompson
    Archives of Microbiology.2021; 203(5): 2743.     CrossRef
  • Aquimarina sp. Associated With a Cuticular Disease of Cultured Larval Palinurid and Scyllarid Lobsters
    Mei C. Ooi, Evan F. Goulden, Andrew J. Trotter, Gregory G. Smith, Andrew R. Bridle
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Comparative genome analysis provides novel insight into the interaction of Aquimarina sp. AD1, BL5 and AD10 with their macroalgal host
    Jennifer Hudson, Vipra Kumar, Suhelen Egan
    Marine Genomics.2019; 46: 8.     CrossRef
  • Real-time PCR assay for Aquimarina macrocephali subsp. homaria and its distribution in shell disease lesions of Homarus americanus, Milne-Edwards, 1837, and environmental samples
    Robert A. Quinn, Suchandra Hazra, Roxanna Smolowitz, Andrei Y. Chistoserdov
    Journal of Microbiological Methods.2017; 139: 61.     CrossRef
  • Aquimarina seongsanensis sp. nov., isolated from sea water
    Yoojin Oh, Bong-geun Choi, Joon Yong Kim, Seong Woon Roh, Sung-Jae Lee
    Antonie van Leeuwenhoek.2017; 110(8): 1019.     CrossRef
  • Aquimarina aggregata sp. nov., isolated from seawater
    Yan Wang, Hong Ming, Weiyun Guo, Hongli Chen, Chenyan Zhou
    International Journal of Systematic and Evolutionary Microbiology.2016; 66(9): 3406.     CrossRef
  • Aquimarina atlantica sp. nov., isolated from surface seawater of the Atlantic Ocean
    Guizhen Li, Qiliang Lai, Fengqin Sun, Xiupian Liu, Yunbiao Xie, Yaping Du, Guangyu Li, Zongze Shao
    Antonie van Leeuwenhoek.2014; 106(2): 293.     CrossRef
  • Aquimarina amphilecti sp. nov., isolated from the sponge Amphilectus fucorum
    Jonathan Kennedy, Lekha Menon Margassery, Niall D. O’Leary, Fergal O’Gara, John Morrissey, Alan D. W. Dobson
    International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_2): 501.     CrossRef
  • Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei
    Xiaoyi Li, Liping Wang, Hui Huang, Qiliang Lai, Zongze Shao
    Antonie van Leeuwenhoek.2014; 106(6): 1223.     CrossRef
  • Aquimarina agarilytica sp. nov., an agarolytic species isolated from a red alga
    Bokun Lin, Guoyong Lu, Yandan Zheng, Wei Xie, Shengkang Li, Zhong Hu
    International Journal of Systematic and Evolutionary Microbiology.2012; 62(Pt_4): 869.     CrossRef
Gaetbulibacter jejuensis sp. nov., Isolated from Seawater
You-Sung Oh , Sang-Bin Lim , Hyung-Yeel Kahng , Byoung-Jun Yoon , Duck-Chul Oh , Jae-Ho Joa , Dong-Heon Lee
J. Microbiol. 2010;48(3):307-311.   Published online June 23, 2010
DOI: https://doi.org/10.1007/s12275-010-9232-8
  • 281 View
  • 0 Download
  • 3 Crossref
AbstractAbstract PDF
A novel marine bacterium, designated strain CNURIC014T was isolated from coastal seawater of Jeju Island in Korea. Strain CNURIC014T formed yellow colonies on marine agar 2216 and the cells were Gram-negative, non-motile, strictly aerobic, rod-shaped. The temperature, pH and NaCl ranges for growth were 15-37°C, pH 6.0-9.0 and 1.0-7.0% NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain CNURIC014T was most closely related to Gaetbulibacter marinus and Gaetbulibacter saemankumensis, with a sequence similarity of 95.1% and 94.6%, respectively. The DNA G+C content of the strain was 33.1 mol% and the major respiratory quinone was menaquinone-6. The major cellular fatty acids were iso-C15:1 (22.8%), iso-C15:0 (18.8%), summed feature 3 (iso-C15:0 2-OH/C16:1 ω7c, 12.9%) and iso-C17:0 3-OH (11.5%). On the basis of phenotypic, phylogenetic, and genotypic data, strain CNURIC014T represents a novel species within the genus Geatbulibacter, for which the name Gaetbulibacter jejuensis sp. nov. is proposed. The type strain is CNURIC014T (=KCTC 22615T =JCM 15976T).

Citations

Citations to this article as recorded by  
  • Validation List no. 222. Valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Genome sequence of Gaetbulibacter sp. PBL-D1 isolated from a Malaysian beach: insights into glycoside hydrolase repertoires
    Ummirul Mukminin Kahar, Najiha Atiqah Md Nor, Wan Nur Izrena Wan Izanni
    BMC Genomic Data.2025;[Epub]     CrossRef
  • Analysis of components according to different collecting time and production method in sun-dried salt
    Yong-Xie Jin, Haeng-Ryan Kim, So-Young Kim
    Korean Journal of Food Preservation.2013; 20(6): 791.     CrossRef
Methylobacterium dankookense sp. nov., Isolated from Drinking Water
Si-Won Lee , Hyun-Woo Oh , Kang-Hyun Lee , Tae-Young Ahn
J. Microbiol. 2009;47(6):716-720.   Published online February 4, 2010
DOI: https://doi.org/10.1007/s12275-009-0126-6
  • 450 View
  • 0 Download
  • 23 Crossref
AbstractAbstract PDF
A pink-pigmented bacterium, designated SW08-7T was isolated from the drinking water of a water purifier. Cells were Gram-negative, rod-shaped, strictly aerobic, and non-spore-forming. It grew optimally at 25°C, pH 6~7. Phylogenetic analysis based on 16S rRNA gene sequence showed that strain SW08-7T belongs to the genus Methylobacterium. The highest 16S rRNA gene sequence similarities were found to Methylobacterium mesophilicum JCM 2829T (96.9%), Methylobacterium brachiatum B0021T (96.9%), Methylobacterium phyllosphaerae CBMB27T (96.6%), Methylobacterium radiotolerans JCM 2831T (96.6%), and Methylobacterium hispanicum GP34T (96.5%). DNA-DNA hybridization experiment revealed low-level (28.5%) of DNA- DNA relatedness between strain SW08-7T and Methylobacterium hispanicum. The genomic DNA G+C content was 68.9 mol% and the major isoprenoid quinone was Q-10. The major cellular fatty acid of strain SW08-7T was C18:1 ω7c (79.8±2.1%). Results of phylogenetic, phenotypic, and biochemical analyses revealed that strain SW08-7T could be classified as representing a novel species of genus Methylobacterium, for which the name Methylobacterium dankookense sp. nov. is proposed. The type strain is SW08-7T (=KCTC 22512T =DSM 22415T).

Citations

Citations to this article as recorded by  
  • Assessment of Bacteriological Quality of Vended Water in Jerry Cans for Domestic Use in Zaria, Kaduna State, Nigeria
    Nura S., Shehu, A.U., Muhammad, A.A., Sharif U., Tijjani, R.B.
    UMYU Journal of Microbiology Research (UJMR).2022; 7(1): 8.     CrossRef
  • Methylobacterium symbioticum sp. nov., a new species isolated from spores of Glomus iranicum var. tenuihypharum
    Jose Antonio Pascual, Margarita Ros, Jesus Martínez, Francisco Carmona, Antonio Bernabé, Rocío Torres, Teresa Lucena, Rosa Aznar, David R. Arahal, Felix Fernández
    Current Microbiology.2020; 77(9): 2031.     CrossRef
  • Microbial Diversity in Deep-Subsurface Hot Brines of Northwest Poland: from Community Structure to Isolate Characteristics
    Agnieszka Kalwasińska, Arkadiusz Krawiec, Edyta Deja-Sikora, Marcin Gołębiewski, Przemysław Kosobucki, Maria Swiontek Brzezinska, Maciej Walczak, Haruyuki Atomi
    Applied and Environmental Microbiology.2020;[Epub]     CrossRef
  • Inhibition of Mycobacterium abscessus, M. chelonae, and M. fortuitum biofilms by Methylobacterium sp
    Marta García-Coca, Graciela Rodríguez-Sevilla, Andrea Pérez-Domingo, John-Jairo Aguilera-Correa, Jaime Esteban, María-Carmen Muñoz-Egea
    The Journal of Antibiotics.2020; 73(1): 40.     CrossRef
  • Epidermidibacterium keratini gen. nov., sp. nov., a member of the family Sporichthyaceae, isolated from keratin epidermis
    Dong-Geol Lee, Martha E. Trujillo, Seunghyun Kang, Jin-Ju Nam, Yeon-Jun Kim
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(3): 745.     CrossRef
  • Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov.
    Peter N. Green, Julie K. Ardley
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(9): 2727.     CrossRef
  • Characterization of bacteria in monitoring-well, leachate and surrounding groundwater near the animal carcass disposal sites using the gene cloning assay
    Heejung Kim, Siwon Lee, In-Cheol Choi
    Journal of the Geological Society of Korea.2016; 52(2): 155.     CrossRef
  • Analysis of Bacterial Diversity in Water from the Han River Water Source Protection Area via a Pyrosequencing Assay
    Heejung Kim, Dugin Kaown, Changsoo Kim, Siwon Lee
    Korean Journal of Environmental Health Sciences.2016; 42(4): 274.     CrossRef
  • Novel and efficient screening of PQQ high-yielding strains and subsequent cultivation optimization
    Zhenjun Si, Jianzhong Zhu, Wenguang Wang, Lei Huang, Peilian Wei, Jin Cai, Zhinan Xu
    Applied Microbiology and Biotechnology.2016; 100(24): 10321.     CrossRef
  • Characterization of Culturable Bacteria in the Atmospheric Environment in Incheon, Korea
    Siwon Lee, Su Jeong Park, Ji Hye Kim, Byung-Dae Min, Hyen-Mi Chung, Sangjung Park
    Korean Journal of Environmental Health Sciences.2016; 42(2): 126.     CrossRef
  • Emticicia sediminis sp. nov. isolated from sediment of a shallow stream
    Si-Eun Park, Siwon Lee, Haneul Kim, Tae-Young Ahn
    International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_8): 2496.     CrossRef
  • Jeotgalibaca dankookensis gen. nov., sp. nov., a member of the family Carnobacteriaceae, isolated from seujeot (Korean traditional food)
    Dong-Geol Lee, Martha E. Trujillo, Heecheol Kang, Tae-Young Ahn
    International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_5): 1729.     CrossRef
  • Flavihumibacter cheonanensis sp. nov., isolated from sediment of a shallow stream
    Wan-Hoe Kim, Siwon Lee, Tae-Young Ahn
    International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_9): 3235.     CrossRef
  • Methylobacterium trifolii sp. nov. and Methylobacterium thuringiense sp. nov., methanol-ut
    S. Wellner, N. Lodders, S. P. Glaeser, P. Kämpfer
    International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_7): 2690.     CrossRef
  • Plant quarantine isolated cultivation system in Korea and results of recorded in 2005-2012
    Siwon Lee, Jungan Park, O-Mi Lee, Yong-Gil Shin
    Korean Journal of Agricultural Science.2013; 40(4): 281.     CrossRef
  • Identification of Opportunistic Pathogenic Bacteria in Drinking Water Samples of Different Rural Health Centers and Their Clinical Impacts on Humans
    Pavan Kumar Pindi, P. Raghuveer Yadav, A. Shiva Shanker
    BioMed Research International.2013; 2013: 1.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published

    International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_1): 1.     CrossRef
  • Arenimonas aquaticum sp. nov., a member of the gammaproteobacterium, isolated from a freshwater reservoir
    A. -Ram Kim, Siwon Lee, Kyudong Han, Tae-Young Ahn
    The Journal of Microbiology.2012; 50(2): 354.     CrossRef
  • Methylobacterium gnaphalii sp. nov., isolated from leaves of Gnaphalium spicatum
    Akio Tani, Nurettin Sahin, Kazuhide Kimbara
    International Journal of Systematic and Evolutionary Microbiology.2012; 62(Pt_11): 2602.     CrossRef
  • Methylobacterium oxalidis sp. nov., isolated from leaves of Oxalis corniculata
    Akio Tani, Nurettin Sahin, Kazuhide Kimbara
    International Journal of Systematic and Evolutionary Microbiology.2012; 62(Pt_7): 1647.     CrossRef
  • Flavobacterium koreense sp. nov., Flavobacterium chungnamense sp. nov., and Flavobacterium cheonanense sp. nov., isolated from a freshwater reservoir
    Siwon Lee, Hang-Yeon Weon, Soo-Jin Kim, Tae-Young Ahn
    The Journal of Microbiology.2011; 49(3): 387.     CrossRef
  • Isolement de Methylobacterium podarium au cours d’une inflammation intraoculaire
    E. Borsali, I. Rossignol, L. Batellier, P. Legrand, P. Goldschmidt, A. Le Bouter, K. Mokhtari, C. Chaumeil
    Médecine et Maladies Infectieuses.2011; 41(12): 665.     CrossRef
  • Methylobacterium marchantiae sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the thallus of a liverwort
    S. Schauer, P. Kämpfer, S. Wellner, C. Spröer, U. Kutschera
    International Journal of Systematic and Evolutionary Microbiology .2011; 61(4): 870.     CrossRef
Antarcticimonas flava gen. nov., sp. nov., Isolated from Antarctic Coastal Seawater
Seung-Jo Yang , Hyun-Myung Oh , Sangyun Chung , Jang-Cheon Cho
J. Microbiol. 2009;47(5):517-523.   Published online October 24, 2009
DOI: https://doi.org/10.1007/s12275-009-0225-4
  • 215 View
  • 0 Download
  • 9 Crossref
AbstractAbstract PDF
A marine bacterium, designated IMCC3175T, was isolated from a seawater sample collected off the Antarctic coast. The strain was Gram-negative, obligately aerobic, carotenoid pigment-containing, and rod-shaped bacterium that divided by binary fission. As determined by 16S rRNA gene sequence comparisons, the most closely related genera were Formosa (92.9~93.3%), Bizionia (91.6~93.2%), Gaetbulibacter (91.5~92.8%), Sediminibacter (92.7%), Yeosuana (92.6%), Subsaximicrobium (92.1~92.2%), and Gillisia (89.5~92.2%). Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain formed a monophyletic clade together with the genera Sediminibacter and Subsaximicrobium but represented an independent phyletic line in this clade of the family Flavobacteriaceae. The DNA G+C content of the strain was 37.3 mol%. The major respiratory quinone was MK-6 and the predominant cellular fatty acids were C16:1 ω7c and/or iso-C15:0 2-OH (12.8%), anteiso-C15:0 (9.4%), and iso-C16:1 (9.4%). Low 16S rRNA gene sequence similarity, formation of a distinct phylogenetic branch, and several phenotypic characteristics, including a narrow range of temperature and salinity for growth, differentiated strain IMCC3175T from other related genera in the family Flavobacteriaceae. Therefore the name Antarcticimonas flava gen. nov., sp. nov. is proposed, with strain IMCC3175T (=KCCM 42713T =NBRC 103398T) as the type strain.

Citations

Citations to this article as recorded by  
  • Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
    Su-Won Jeong, Jeong Eun Han, June-Young Lee, Ji-Ho Yoo, Do-Yeon Kim, In Chul Jeong, Jee-Won Choi, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Euon Jung Tak, Hojun Sung, Hyun Sik Kim, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
    Journal of Microbiology.2022; 60(6): 576.     CrossRef
  • Pigments from Antarctic bacteria and their biotechnological applications
    Tiago Rodrigues e Silva, Luiz Carlos Francelino Silva, Aline Cavalcanti de Queiroz, Magna Suzana Alexandre Moreira, Carlos Alberto de Carvalho Fraga, Graciéle Cunha Alves de Menezes, Luiz Henrique Rosa, Juliano Bicas, Valéria Maia de Oliveira, Alysson Wag
    Critical Reviews in Biotechnology.2021; 41(6): 809.     CrossRef
  • UV-Protective Compounds in Marine Organisms from the Southern Ocean
    Laura Núñez-Pons, Conxita Avila, Giovanna Romano, Cinzia Verde, Daniela Giordano
    Marine Drugs.2018; 16(9): 336.     CrossRef
  • Changchengzhania lutea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from Antarctic intertidal sediment
    Ning Wang, Fei Xu, Xi-Ying Zhang, Xiu-Lan Chen, Qi-Long Qin, Bai-Cheng Zhou, Yu-Zhong Zhang, Mei Shi
    International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 5187.     CrossRef
  • Hanstruepera neustonica gen. nov., sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from estuarine water, and emendation of Sediminibacter furfurosus Khan et al. 2007 emend. Kwon et al. 2014, Mangro
    Asif Hameed, Mariyam Shahina, Wei-An Lai, Shih-Yao Lin, You-Cheng Liu, Yi-Han Hsu, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_2): 336.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology.2014; 64(Pt_1): 1.     CrossRef
  • Hoppeia youngheungensis gen. nov., sp. nov., a member of the Flavobacteriaceae isolated from tidal flat sediment, and emended descriptions of the genus Sediminibacter and Sediminibacter furfurosus
    Yong Min Kwon, Donghee Choi, Sung-Hyun Yang, Kae Kyoung Kwon, Sang-Jin Kim
    International Journal of Systematic and Evolutionary Microbiology.2014; 64(Pt_6): 2053.     CrossRef
  • Gene cloning and characterization of a cold-adapted β-glucosidase belonging to glycosyl hydrolase family 1 from a psychrotolerant bacterium Micrococcus antarcticus
    Hong-Xia Fan, Li-Li Miao, Ying Liu, Hong-Can Liu, Zhi-Pei Liu
    Enzyme and Microbial Technology.2011; 49(1): 94.     CrossRef
  • Bacterial biofilm: structure, function, and antimicrobial resistance
    Delphine Dufour, Vincent Leung, Céline M. Lévesque
    Endodontic Topics.2010; 22(1): 2.     CrossRef
Impact of Some Environmental Factors on Growth and Production of Ochratoxin A of/by Aspergillus tubingensis, A. niger, and A. carbonarius Isolated from Moroccan Grapes
Atar Selouane , Driss Bouya , Ahmed Lebrihi , C. Decock , Amina Bouseta
J. Microbiol. 2009;47(4):411-419.   Published online September 9, 2009
DOI: https://doi.org/10.1007/s12275-008-0236-6
  • 202 View
  • 0 Download
  • 24 Crossref
AbstractAbstract PDF
The effects of temperature, water activity (aw), incubation time, and their combinations on radial growth and ochratoxin A (OTA) production of/by eight Aspergillus niger aggregate strains (six A. tubingensis and two A. niger) and four A. carbonarius isolated from Moroccan grapes were studied. Optimal conditions for the growth of most studied strains were shown to be at 25°C and 0.95 aw. No growth was observed at 10°C regardless of the water activity and isolates. The optimal temperature for OTA production was in the range of 25°C~30°C for A. carbonarius and 30°C~37°C for A. niger aggregate. The optimal aw for toxin production was 0.95~0.99 for A. carbonarius and 0.90~0.95 for A. niger aggregate. Mean OTA concentration produced by all the isolates of A. niger aggregate tested at all sampling times shows that maximum amount of OTA (0.24 µg/g) was produced at 37°C and 0.90 aw. However, for A. carbonarius, mean maximum amounts of OTA (0.22 µg/g) were observed at 25°C and 0.99 aw. Analysis of variance showed that the effects of all single factors (aw, isolate, temperature and incubation time) and their interactions on growth and OTA production were highly significant.

Citations

Citations to this article as recorded by  
  • Mycoflora and mycotoxins associated with stored cowpea (Vigna unguiculata L. Walp) seeds from smallholder farmers in South Africa
    Johannes Jacobus Francois Viljoen, Mariette Truter, Quenton Kritzinger
    Phytoparasitica.2025;[Epub]     CrossRef
  • Impact of environmental factors on ochratoxin A: From natural occurrence to control strategy
    Gang Wang, Erfeng Li, Antonia Gallo, Giancarlo Perrone, Elisabeth Varga, Junning Ma, Bolei Yang, Bowen Tai, Fuguo Xing
    Environmental Pollution.2023; 317: 120767.     CrossRef
  • Molecular explication of grape berry-fungal infections and their potential application in recent postharvest infection control strategies
    Dhanasekaran Solairaj, Qiya Yang, Ngolong Ngea Guillaume Legrand, Michael N. Routledge, Hongyin Zhang
    Trends in Food Science & Technology.2021; 116: 903.     CrossRef
  • Effects of temperature and water activity change on ecophysiology of ochratoxigenic Aspergillus carbonarius in field-simulating conditions
    Carla Cervini, Antonia Gallo, Luca Piemontese, Donato Magistà, Antonio F. Logrieco, Massimo Ferrara, Michele Solfrizzo, Giancarlo Perrone
    International Journal of Food Microbiology.2020; 315: 108420.     CrossRef
  • Pest Management and Ochratoxin A Contamination in Grapes: A Review
    Letizia Mondani, Roberta Palumbo, Dimitrios Tsitsigiannis, Dionysios Perdikis, Emanuele Mazzoni, Paola Battilani
    Toxins.2020; 12(5): 303.     CrossRef
  • Effect of lignocellulosic enzymes on the treatment of mature landfill leachate
    Mofizul Islam, Alvan Wai, Georg Hausner, Qiuyan Yuan
    Journal of Environmental Management.2019; 233: 400.     CrossRef
  • Requirement of LaeA, VeA, and VelB on Asexual Development, Ochratoxin A Biosynthesis, and Fungal Virulence in Aspergillus ochraceus
    Gang Wang, Haiyong Zhang, Yulong Wang, Fei Liu, Erfeng Li, Junning Ma, Bolei Yang, Chenxi Zhang, Li Li, Yang Liu
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Impact of some environmental factors on growth and ochratoxin A production by Aspergillus niger and Aspergillus welwitschiae
    M.L. Abarca, M.R. Bragulat, G. Castellá, F.J. Cabañes
    International Journal of Food Microbiology.2019; 291: 10.     CrossRef
  • Risk management of ochratoxigenic fungi and ochratoxin A in maize grains by bioactive EVOH films containing individual components of some essential oils
    Andrea Tarazona, José V. Gómez, Rafael Gavara, Rufino Mateo-Castro, José V. Gimeno-Adelantado, Misericordia Jiménez, Eva M. Mateo
    International Journal of Food Microbiology.2018; 269: 107.     CrossRef
  • Does the Host Contribute to Modulation of Mycotoxin Production by Fruit Pathogens?
    Dilip Kumar, Shiri Barad, Edward Sionov, Nancy Keller, Dov Prusky
    Toxins.2017; 9(9): 280.     CrossRef
  • Influence of temperature, water activity and incubation time on fungal growth and production of ochratoxin A and zearalenone by toxigenic Aspergillus tubingensis and Fusarium incarnatum isolates in sorghum seeds
    Amani Lahouar, Sonia Marin, Ana Crespo-Sempere, Salem Saïd, Vicente Sanchis
    International Journal of Food Microbiology.2017; 242: 53.     CrossRef
  • Fungal Decontamination of Fleshy Fruit Water Washes by Double Atmospheric Pressure Cold Plasma
    Salama A. Ouf, Abdel‐Aleam H. Mohamed, Wael S. El‐Sayed
    CLEAN – Soil, Air, Water.2016; 44(2): 134.     CrossRef
  • Diversity of Mycotoxin-Producing Black Aspergilli in Canadian Vineyards
    Tianyu F. Qi, Justin B. Renaud, Tim McDowell, Keith A. Seifert, Ken K.-C. Yeung, Mark W. Sumarah
    Journal of Agricultural and Food Chemistry.2016; 64(7): 1583.     CrossRef
  • OTA-Grapes: A Mechanistic Model to Predict Ochratoxin A Risk in Grapes, a Step beyond the Systems Approach
    Battilani Paola, Camardo Marco
    Toxins.2015; 7(8): 3012.     CrossRef
  • The potential hazards of Aspergillus sp. in foods and feeds, and the role of biological treatment: A review
    Sheikh Imranudin Sheikh-Ali, Akil Ahmad, Siti-Hamidah Mohd-Setapar, Zainul Akmal Zakaria, Norfahana Abdul-Talib, Aidee Kamal Khamis, Md Enamul Hoque
    Journal of Microbiology.2014; 52(10): 807.     CrossRef
  • Non-Botrytis grape-rotting fungi responsible for earthy and moldy off-flavors and mycotoxins
    Sandrine Rousseaux, Camelia Filofteia Diguta, Florentina Radoï-Matei, Hervé Alexandre, Michèle Guilloux-Bénatier
    Food Microbiology.2014; 38: 104.     CrossRef
  • Hydrolytic enzymes production by Aspergillus section Nigri in presence of butylated hydroxyanisole and propyl paraben on peanut meal extract agar
    Carla L. Barberis, María F. Landa, Mauricio G. Barberis, Guillermo Giaj-Merlera, Ana M. Dalcero, Carina E. Magnoli
    Revista Iberoamericana de Micología.2014; 31(2): 131.     CrossRef
  • Ecophysiological characterization of Aspergillus carbonarius, Aspergillus tubingensis and Aspergillus niger isolated from grapes in Spanish vineyards
    E. García-Cela, A. Crespo-Sempere, A.J. Ramos, V. Sanchis, S. Marin
    International Journal of Food Microbiology.2014; 173: 89.     CrossRef
  • Effect of Temperature on the Growth and Ochratoxin A Production of the Aspergillus section Nigri Members Isolated from Dried Figs
    Aysegul Mutlu‐Ingok, Funda Karbancioglu‐GUler
    Journal of Food Safety.2014; 34(4): 333.     CrossRef
  • Traditional Fermented Foods of North African Countries: Technology and Food Safety Challenges With Regard to Microbiological Risks
    Noreddine Benkerroum
    Comprehensive Reviews in Food Science and Food Safety.2013; 12(1): 54.     CrossRef
  • In vitro effect of some fungicides used in cultivation ofCapsicum spp. on growth and ochratoxin A production byAspergillus species
    L. Santos, S. Marín, V. Sanchis, A.J. Ramos
    World Mycotoxin Journal.2013; 6(2): 159.     CrossRef
  • Analytical techniques for wine analysis: An African perspective; a review
    André de Villiers, Phillipus Alberts, Andreas G.J. Tredoux, Hélène H. Nieuwoudt
    Analytica Chimica Acta.2012; 730: 2.     CrossRef
  • Effect of Capsicum carotenoids on growth and ochratoxin A production by chilli and paprika Aspergillus spp. isolates
    L. Santos, R. Kasper, J. Gil-Serna, S. Marín, V. Sanchis, A.J. Ramos
    International Journal of Food Microbiology.2010; 142(3): 354.     CrossRef
  • Ecophysiology of Aspergillus Section Nigri Species Potential Ochratoxin A Producers
    Andrea L. Astoreca, Carina E. Magnoli, Ana M. Dalcero
    Toxins.2010; 2(11): 2593.     CrossRef
Journal Article
Targeting the rpoB Gene Using Nested PCR-Restriction Fragment Length Polymorphism for Identification of Nontuberculous Mycobacteria in Hospital Tap Water
Ji-Hyun Shin , Hae-Kyung Lee , Eun-Jin Cho , Jae-Yon Yu , Yeon-Ho Kang
J. Microbiol. 2008;46(6):608-614.   Published online December 24, 2008
DOI: https://doi.org/10.1007/s12275-008-0102-6
  • 323 View
  • 0 Download
  • 15 Crossref
AbstractAbstract PDF
Nontuberculous mycobacteria (NTM) are ubiquitous in the environment and can cause nosocomial infections in immunocompromised patients. Recently the presence of NTM in public drinking water and hospital water distribution systems has been reported. Their ability to form biofilms and their resistance to chlorine both contribute to their survival and colonization in water distribution systems. Here we analyzed thirty-two hospital tap water samples that were collected from different locations in three hospitals so as to evaluate the prevalence of NTM species. The water samples were concentrated by membrane filtration and then eluted with sterilized water following sonication. Two-step direct PCR targeting the rpoB gene, restriction fragment length polymorphism (RFLP) using the MspI restriction enzyme, and sequence analysis were performed for identification of NTM to the species level. The sequences of each PCR product were analyzed using BLASTN. Seven samples (7/32, 21.9%) were positive for NTM as determined by nested-PCR. The PCR-RFLP results indicated five different patterns among the seven positive PCR samples. The waterborn NTM were identified, including M. peregrinum, M. chelonae (2 cases), M. abscessus, M. gordonae (2 cases), and Mycobacterium sp. JLS. The direct two-step PCR-RFLP method targeting the rpoB gene was effective for the detection and the differentiation of NTM species from hospital tap water.

Citations

Citations to this article as recorded by  
  • Occurrence of opportunistic pathogens in private wells after major flooding events: A four state molecular survey
    Kris Mapili, William J. Rhoads, Mary Coughter, Kelsey J. Pieper, Marc A. Edwards, Amy Pruden
    Science of The Total Environment.2022; 826: 153901.     CrossRef
  • Omadacycline for management of Mycobacterium abscessus infections: a review of its effectiveness, place in therapy, and considerations for use
    Ashley R. Rizzo, Nader H. Moniri
    BMC Infectious Diseases.2022;[Epub]     CrossRef
  • Threat in Water for Drinking and Domestic Use
    Dursun Atik, Sukrü Oksuz, Elif Ozturk, Emel Çaliskan, Nida Akar, Mehmet Ali Sungur
    The International Journal of Mycobacteriology.2021; 10(2): 188.     CrossRef
  • Prevalence of Non-Tuberculous Mycobacteria in Hospital Waters of Major Cities of Khuzestan Province, Iran
    Azar Dokht Khosravi, Abdolrazagh Hashemi Shahraki, Mohammad Hashemzadeh, Rasa Sheini Mehrabzadeh, Ali Teimoori
    Frontiers in Cellular and Infection Microbiology.2016;[Epub]     CrossRef
  • Nosocomial pseudo-outbreak of Mycobacterium gordonae associated with a hospital's water supply contamination: a case series of 135 patients
    Marija Zlojtro, Mateja Jankovic, Miroslav Samarzija, Ljiljana Zmak, Vera Katalinic Jankovic, Mihaela Obrovac, Igor Zlojtro, Marko Jakopovic
    Journal of Water and Health.2015; 13(1): 125.     CrossRef
  • Endosymbiotic Mycobacterium chelonae in a Vermamoeba vermiformis strain isolated from the nasal mucosa of an HIV patient in Lima, Peru
    Alfonso Martín Cabello-Vílchez, Rosmery Mena, Johanna Zuñiga, Pablo Cermeño, Carmen Ma Martín-Navarro, Ana C. González, Atteneri López-Arencibia, María Reyes-Batlle, José E. Piñero, Basilio Valladares, Jacob Lorenzo-Morales
    Experimental Parasitology.2014; 145: S127.     CrossRef
  • Sacroiliitis secondary to catheter-related bacteremia due to Mycobacterium abscessus (sensu stricto)
    Chrislène Laurens, Geneviève Héry-Arnaud, Raphael Chiron, Eric Oziol, Hélène Jean-Pierre, Nicolas Bouzinbi, Philippe Vande Perre, Anne-Laure Bañuls, Sylvain Godreuil
    Annals of Clinical Microbiology and Antimicrobials.2014;[Epub]     CrossRef
  • Mycobacterium abscessus Induces a Limited Pattern of Neutrophil Activation That Promotes Pathogen Survival
    Kenneth C. Malcolm, E. Michelle Nichols, Silvia M. Caceres, Jennifer E. Kret, Stacey L. Martiniano, Scott D. Sagel, Edward D. Chan, Lindsay Caverly, George M. Solomon, Paul Reynolds, Donna L. Bratton, Jennifer L. Taylor-Cousar, David P. Nichols, Milene T.
    PLoS ONE.2013; 8(2): e57402.     CrossRef
  • Standardization of multilocus sequence typing scheme for Mycobacterium abscessus and Mycobacterium massiliense
    Song Yee Kim, Young Ae Kang, Il Kwon Bae, Jae-Joon Yim, Moo Suk Park, Young Sam Kim, Se Kyu Kim, Joon Chang, Seok Hoon Jeong
    Diagnostic Microbiology and Infectious Disease.2013; 77(2): 143.     CrossRef
  • Mycobacterium abscessus multispacer sequence typing
    Mohamed Sassi, Imen Ben Kahla, Michel Drancourt
    BMC Microbiology.2013;[Epub]     CrossRef
  • Diversity, Community Composition, and Dynamics of Nonpigmented and Late-Pigmenting Rapidly Growing Mycobacteria in an Urban Tap Water Production and Distribution System
    S. Dubrou, J. Konjek, E. Macheras, B. Welté, L. Guidicelli, E. Chignon, M. Joyeux, J. L. Gaillard, B. Heym, T. Tully, G. Sapriel
    Applied and Environmental Microbiology.2013; 79(18): 5498.     CrossRef
  • Isolation of nontuberculous mycobacteria from hospital waters in Turkey
    Gonca Erkose Genc, Elvira Richter, Zayre Erturan
    APMIS.2013; 121(12): 1192.     CrossRef
  • Mycobacteria in water, soil, plants and air: a review
    K. Hruska, M. Kaevska
    Veterinární medicína.2012; 57(12): 623.     CrossRef
  • Molecular Survey of the Occurrence of Legionella spp., Mycobacterium spp., Pseudomonas aeruginosa, and Amoeba Hosts in Two Chloraminated Drinking Water Distribution Systems
    Hong Wang, Marc Edwards, Joseph O. Falkinham, Amy Pruden
    Applied and Environmental Microbiology.2012; 78(17): 6285.     CrossRef
  • Multilocus Sequence Analysis and rpoB Sequencing of Mycobacterium abscessus (Sensu Lato) Strains
    Edouard Macheras, Anne-Laure Roux, Sylvaine Bastian, Sylvia Cardoso Leão, Moises Palaci, Valérie Sivadon-Tardy, Cristina Gutierrez, Elvira Richter, Sabine Rüsch-Gerdes, Gaby Pfyffer, Thomas Bodmer, Emmanuelle Cambau, Jean-Louis Gaillard, Beate Heym
    Journal of Clinical Microbiology.2011; 49(2): 491.     CrossRef
Research Support, Non-U.S. Gov'ts
Prevalence of Tetracycline Resistance Genes in Greek Seawater Habitats
Theodora L. Nikolakopoulou , Eleni P. Giannoutsou , Adamandia A. Karabatsou , Amalia D. Karagouni
J. Microbiol. 2008;46(6):633-640.   Published online December 24, 2008
DOI: https://doi.org/10.1007/s12275-008-0080-8
  • 263 View
  • 0 Download
  • 16 Crossref
AbstractAbstract PDF
The presence of selected tetracycline resistance (TcR) genes was studied in different Greek seawater habitats, originated from wastewater treatment facilities, fishfarm, and coastal environments. The methods employed included assessment of the presence of twelve gene clusters by PCR, followed by hybridization with specific probes, in habitat extracted DNA, TcR bacteria, and exogenous isolated plasmids conferring TcR. The direct DNA-based analysis showed that tet(Α) and tet(K) genes were detected in all habitats, whilst tet(C) and tet(E) were present in fishfarm and wastewater effluent samples and tet(M) was detected in fishfarm and coastal samples. Resistance genes tet(A), tet(C), tet(K), and tet(M) were detected in 60 of the 89 isolates screened. These isolates were identified by fatty acid methyl ester analysis (FAME) as Stenotrophomonas, Acinetobacter, Pseudomonas, Bacillus, and Staphylococcus strains. The presence of the TcR genes in 15% of the bacterial isolates coincided with the presence of IncP plasmids. A habitat-specific dissemination of IncP alpha plasmids in wastewater effluent isolates and of IncP beta plasmids in fishfarm isolates was observed. Exogenous isolation demonstrated the presence of plasmids harbouring TcR genes in all the habitats tested. Plasmids were shown to carry tet(A), tet(C), tet(E), and tet(K) genes. It is concluded that TcR genes are widespread in the seawater habitats studied and often occur on broad host range plasmids that seem to be well disseminated in the bacterial communities.

Citations

Citations to this article as recorded by  
  • Bacterial diversity screening in endangered pelicans reveals high prevalence of methicillin-susceptible Staphylococcus aureus
    Teresa Cardona-Cabrera, Carmen González-Azcona, Paula Eguizábal, Olga Alexandrou, Giorgos Catsadorakis, Panagiotis Azmanis, Carmen Lozano, Ursula Höfle, Carmen Torres
    Microbial Pathogenesis.2025; 208: 108009.     CrossRef
  • Antimicrobial Resistance in Romania: Updates on Gram-Negative ESCAPE Pathogens in the Clinical, Veterinary, and Aquatic Sectors
    Ilda Czobor Barbu, Irina Gheorghe-Barbu, Georgiana Alexandra Grigore, Corneliu Ovidiu Vrancianu, Mariana Carmen Chifiriuc
    International Journal of Molecular Sciences.2023; 24(9): 7892.     CrossRef
  • Isolation and characterization of a novel Tenacibaculum species and a corresponding bacteriophage from a Mediterranean fish hatchery: Description of Tenacibaculum larymnensis sp. nov. and Tenacibaculum phage Larrie
    Maria Ioanna Tsertou, Adriana Triga, Stavros Droubogiannis, Constantina Kokkari, Grammatiki Anasi, Pantelis Katharios
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Composition and distribution of bacterial communities and antibiotic resistance genes in fish of four mariculture systems
    Mingqing Zhang, Liping Hou, Yating Zhu, Cuiping Zhang, Wen Li, Xingxing Lai, Jinlin Yang, Shuisheng Li, Hu Shu
    Environmental Pollution.2022; 311: 119934.     CrossRef
  • Antibiotic-Resistant Bacteria in Aquaculture and Climate Change: A Challenge for Health in the Mediterranean Area
    Milva Pepi, Silvano Focardi
    International Journal of Environmental Research and Public Health.2021; 18(11): 5723.     CrossRef
  • Acinetobacter baumannii Antibiotic Resistance Mechanisms
    Ioannis Kyriakidis, Eleni Vasileiou, Zoi Dorothea Pana, Athanasios Tragiannidis
    Pathogens.2021; 10(3): 373.     CrossRef
  • Antibiotic-Resistant Bacteria in Greywater and Greywater-Irrigated Soils
    Eleonora Troiano, Luciano Beneduce, Amit Gross, Zeev Ronen
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate
    Lisa Nonaka, Tatsuya Yamamoto, Fumito Maruyama, Yuu Hirose, Yuki Onishi, Takeshi Kobayashi, Satoru Suzuki, Nobuhiko Nomura, Michiaki Masuda, Hirokazu Yano, Axel Cloeckaert
    PLOS ONE.2018; 13(6): e0198613.     CrossRef
  • Multiple Antimicrobial Resistance and Novel Point Mutation in Fluoroquinolone-Resistant Escherichia coli Isolates from Mangalore, India
    Kogaluru Shivakumaraswamy Santhosh, Vijaya Kumar Deekshit, Moleyuru Nagarajappa Venugopal, Iddya Karunasagar, Indrani Karunasagar
    Microbial Drug Resistance.2017; 23(8): 994.     CrossRef
  • Monitoring of drug resistance amplification and attenuation with the use of tetracycline-resistant bacteria during wastewater treatment
    Monika Harnisz, Ewa Korzeniewska, Sebastian Niestępski, Adriana Osińska, Beata Nalepa, B. Kaźmierczak, M. Kutyłowska, K. Piekarska, H. Jouhara, J. Danielewicz
    E3S Web of Conferences.2017; 22: 00063.     CrossRef
  • Exogenous isolation of conjugative plasmids from pesticide contaminated soil
    Reshma Anjum, Elisabeth Grohmann, Abdul Malik
    World Journal of Microbiology and Biotechnology.2012; 28(2): 567.     CrossRef
  • Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2012 update)

    EFSA Journal.2012;[Epub]     CrossRef
  • Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2011 update)

    EFSA Journal.2011; 9(12): 2497.     CrossRef
  • Tetracycline Resistance-Encoding Plasmid from Bacillus sp. Strain #24, Isolated from the Marine Sponge Haliclona simulans
    Robert W. Phelan, Charles Clarke, John P. Morrissey, Alan D. W. Dobson, Fergal O'Gara, Teresa M. Barbosa
    Applied and Environmental Microbiology.2011; 77(1): 327.     CrossRef
  • Scientific Opinion on the maintenance of the list of QPS biological agents intentionally added to food and feed (2010 update)

    EFSA Journal.2010;[Epub]     CrossRef
  • The pattern, association with multidrug-resistance and transferability of plasmid-mediated tetracycline resistance inEscherichia coli isolates from the poultry in Iran
    Tahereh Falsafi, Monir Ebrahimi, Ezat Asgarani, Vahid Mirtorabi
    Annals of Microbiology.2009;[Epub]     CrossRef
The Identification of CTX-M-14, TEM-52, and CMY-1 Enzymes in Escherichia coli Isolated from the Han River in Korea
Jungmin Kim , Hee Young Kang , Yeonhee Lee
J. Microbiol. 2008;46(5):478-481.   Published online October 31, 2008
DOI: https://doi.org/10.1007/s12275-008-0150-y
  • 387 View
  • 0 Download
  • 24 Crossref
AbstractAbstract PDF
From water samples collected monthly between 2000 and 2001 from the Han River in Seoul, sixteen strains of Escherichia coli which confer resistance to at least 10 kinds of antimicrobial agents were isolated. From these isolates, 2 kinds of extended-spectrum β-lactamases (ESBLs) and one plasmid-mediated AmpC β-lactamase were detected; CTX-M-14 from 10 isolates, TEM-52 from 5 isolates, and CMY-1 from one isolate. Class 1 integron gene cassettes, such as aadA1, dfr12-orfF-aadA2, and dfr17-aadA5, were also detected and the integrons are the same as those found in E. coli isolated from swine, poultry, and humans in Korea. The result of this study indicated the importance of river water as a reservoir for antimicrobial resistance genes and resistant bacteria.

Citations

Citations to this article as recorded by  
  • Occurrence of Multidrug-Resistant (MDR) Extended-Spectrum Beta-lactamase (ESBL)-Producing Escherichia coli in Wastewater and Natural Water Sources from the Eastern Part of Uttar Pradesh, India
    Kaushik Satyaprakash, Pavan Kumar Pesingi, Annada Das, M. R. Vineeth, Satya Veer Singh Malik, Sukhadeo B. Barbuddhe, Deepak Bhiwa Rawool
    Water, Air, & Soil Pollution.2024;[Epub]     CrossRef
  • Freshwater environment as a reservoir of extended-spectrum β-lactamase-producing Enterobacteriaceae
    Sohyun Cho, Charlene R Jackson, Jonathan G Frye
    Journal of Applied Microbiology.2023;[Epub]     CrossRef
  • Bacteriological Researches on Zoo and Aquarium
    Daisuke SUMIYAMA
    Japanese Journal of Zoo and Wildlife Medicine.2022; 27(2): 69.     CrossRef
  • Environmental Antimicrobial Resistance in a Small Urban Mediterranean River: A Focus on Endemic Beta-Lactamases in Clinically Relevant Bacteria
    Fabien Aujoulat, Rose Ragot, Mylène Toubiana, Chrystelle Bancon-Montigny, Patrick Monfort, Christian Salles, Agnès Masnou, Sophie Delpoux, Marlène Rio, Marie-George Tournoud, Pierre Marchand, Estelle Jumas-Bilak, Patricia Licznar-Fajardo
    Water.2021; 13(15): 2010.     CrossRef
  • Occurrence and Diversity of CTX-M-Producing Escherichia coli From the Seine River
    Delphine Girlich, Rémy A. Bonnin, Thierry Naas
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Unexpected common occurrence of transferable extended spectrum cephalosporinase-producing Escherichia coli in Swedish surface waters used for drinking water supply
    Maria Egervärn, Stina Englund, Marianne Ljunge, Christer Wiberg, Maria Finn, Mats Lindblad, Stefan Börjesson
    Science of The Total Environment.2017; 587-588: 466.     CrossRef
  • Genetic Investigation of Beta-Lactam Associated Antibiotic Resistance Among Escherichia Coli Strains Isolated from Water Sources
    Reza Ranjbar, Mehrdad Sami
    The Open Microbiology Journal.2017; 11(1): 203.     CrossRef
  • Characterization of ceftriaxone-resistant Aeromonas spp. isolates from stool samples of both children and adults in Southern India
    Maanasa Bhaskar, K P Dinoop, Jharna Mandal
    Journal of Health, Population and Nutrition.2015;[Epub]     CrossRef
  • ESBL, plasmidic AmpC, and associated quinolone resistance determinants in coliforms isolated from hospital effluent: first report ofqnrB2,qnrB9,qnrB19, andblaCMY-4in Algeria
    Lynda Anssour, Yamina Messai, Meriem Derkaoui, Souhila Alouache, Vanesa Estepa, Sergio Somalo, Carmen Torres, Rabah Bakour
    Journal of Chemotherapy.2014; 26(2): 74.     CrossRef
  • Bacterial diversity and antibiotic resistance in water habitats: searching the links with the human microbiome
    Ivone Vaz-Moreira, Olga C. Nunes, Célia M. Manaia
    FEMS Microbiology Reviews.2014; 38(4): 761.     CrossRef
  • Characterization of cefotaxime-resistant Escherichia coli isolated from wastewater treatment plant in Daegu
    Hwan-Deuk Kim, Dae-Hyun Park, Mi-Ree Lee, Eun-Jeong Kim, Jae-Keun Cho
    Korean Journal of Veterinary Service.2014; 37(4): 225.     CrossRef
  • Extended spectrum ß-lactamase- and constitutively AmpC-producing Enterobacteriaceae on fresh produce and in the agricultural environment
    Hetty Blaak, Angela H.A.M. van Hoek, Christiaan Veenman, Arieke E. Docters van Leeuwen, Gretta Lynch, Wendy M. van Overbeek, Ana Maria de Roda Husman
    International Journal of Food Microbiology.2014; 168-169: 8.     CrossRef
  • Characterization of ESBLs and Associated Quinolone Resistance in Escherichia coli and Klebsiella pneumoniae Isolates from an Urban Wastewater Treatment Plant in Algeria
    Souhila Alouache, Vanesa Estepa, Yamina Messai, Elena Ruiz, Carmen Torres, Rabah Bakour
    Microbial Drug Resistance.2014; 20(1): 30.     CrossRef
  • Prevalence of antimicrobial resistance and integrons in extended-spectrum β-lactamases producing Escherichia coli isolated from Nakdong and Gumho river
    Jae-Keun Cho, Hwan-Deuk Kim, Soon-Hyo Kwon, Jin-Hyun Kim, Sung-Il Jang, Choi-Kyu Park, Ki-Seuk Kim
    Korean Journal of Veterinary Service.2014; 37(1): 19.     CrossRef
  • Trends in Human Fecal Carriage of Extended-Spectrum β-Lactamases in the Community: Toward the Globalization of CTX-M
    Paul-Louis Woerther, Charles Burdet, Elisabeth Chachaty, Antoine Andremont
    Clinical Microbiology Reviews.2013; 26(4): 744.     CrossRef
  • Human health implications of clinically relevant bacteria in wastewater habitats
    Ana Rita Varela, Célia M. Manaia
    Environmental Science and Pollution Research.2013; 20(6): 3550.     CrossRef
  • Epidemiology and genetics of CTX-M extended-spectrum β-lactamases in Gram-negative bacteria
    Wei-Hua Zhao, Zhi-Qing Hu
    Critical Reviews in Microbiology.2013; 39(1): 79.     CrossRef
  • Pathogenic Escherichia coli Strains Producing Extended-Spectrum β-Lactamases in the Yeongsan River Basin of South Korea
    Jeonghwan Jang, Yae-Seul Suh, Doris Y. W. Di, Tatsuya Unno, Michael J. Sadowsky, Hor-Gil Hur
    Environmental Science & Technology.2013; 47(2): 1128.     CrossRef
  • Distribution of Extended-Spectrum β-Lactamases, AmpC β-Lactamases, and Carbapenemases among Enterobacteriaceae Isolates Causing Intra-Abdominal Infections in the Asia-Pacific Region: Results of the Study for Monitoring Antimicrobial Resistance Trends (SMA
    Wang-Huei Sheng, Robert E. Badal, Po-Ren Hsueh
    Antimicrobial Agents and Chemotherapy.2013; 57(7): 2981.     CrossRef
  • Class 1 and 2 integrons, sul resistance genes and antibiotic resistance in Escherichia coli isolated from Dongjiang River, South China
    Hao-Chang Su, Guang-Guo Ying, Ran Tao, Rui-Quan Zhang, Jian-Liang Zhao, You-Sheng Liu
    Environmental Pollution.2012; 169: 42.     CrossRef
  • Catheter-Related Bacteremia Caused by Multidrug-Resistant Leclercia adecarboxylata in a Patient with Breast Cancer
    Gee-Wook Shin, Myung-Jo You, Hye-Soo Lee, Chang-Seop Lee
    Journal of Clinical Microbiology.2012; 50(9): 3129.     CrossRef
  • Antibiotic Resistance and Extended-Spectrum β-Lactamases in Isolated Bacteria from Seawater of Algiers Beaches (Algeria)
    Souhila Alouache, Mohamed Kada, Yamina Messai, Vanesa Estepa, Carmen Torres, Rabah Bakour
    Microbes and Environments.2012; 27(1): 80.     CrossRef
  • Diversity of Clavulanic Acid-Inhibited Extended-Spectrum β-Lactamases inAeromonasspp. from the Seine River, Paris, France
    Delphine Girlich, Laurent Poirel, Patrice Nordmann
    Antimicrobial Agents and Chemotherapy.2011; 55(3): 1256.     CrossRef
  • Nationwide survey of extended-spectrum β-lactamase-producing Enterobacteriaceae in the French community setting
    C. Arpin, C. Quentin, F. Grobost, E. Cambau, J. Robert, V. Dubois, L. Coulange, C. André
    Journal of Antimicrobial Chemotherapy.2009; 63(6): 1205.     CrossRef
Different Planctomycetes Diversity Patterns in Latitudinal Surface Seawater of the Open Sea and in Sediment
Qinglong Shu , Nianzhi Jiao
J. Microbiol. 2008;46(2):154-159.   Published online June 11, 2008
DOI: https://doi.org/10.1007/s12275-008-0002-9
  • 280 View
  • 0 Download
  • 20 Crossref
AbstractAbstract PDF
The 16S rRNA gene approach was applied to investigate the diversity of Planctomycetes in latitudinal surface seawater of the Western Pacific Ocean. The results revealed that the Pirellula-Rhodopirellula-Blastopirellula clade dominated the Planctomycetes community at all surface seawater sites while the minority genera Gemmata and Planctomyces were only found at sites H5 and H2 respectively. Although the clone frequency of the PRB clade seemed stable (between 83.3% and 94.1%) for all surface seawater sites, the retrieved Pirellula-Rhodopirellula-Blastopirellula clade presented unexpected diversity. Interestingly, low latitude seawater appeared to have higher diversity than mid-latitudes. ∫-LIBSHUFF software analysis revealed significantly different diversity patterns between in latitudinal surface seawater and in the sediment of South China Sea station M2896. Our data suggested that different hydrological and geographic features contributed to the shift of Planctomycetes diversity in marine environments. This is, to our knowledge, the first systematic assessment of Planctomycetes in latitudinal surface seawater of the open sea and the first comparison of diversity pattern between surface seawater and sediments and has broadened our understanding of Planctomycetes diversity in marine environments.

Citations

Citations to this article as recorded by  
  • The Utility of Macroecological Rules for Microbial Biogeography
    Jonathan R. Dickey, Rachel A. Swenie, Sophia C. Turner, Claire C. Winfrey, Daniela Yaffar, Anchal Padukone, Kendall K. Beals, Kimberly S. Sheldon, Stephanie N. Kivlin
    Frontiers in Ecology and Evolution.2021;[Epub]     CrossRef
  • Gemmata obscuriglobus: A connecting link between prokaryotic and eukaryotic cell
    Saurabh Singh, Himanshu K. Rathva, Tulika Sahay, Daljeet S. Dhanjal, Chirag Chopra, Reena Singh
    Biologia.2020; 75(12): 2433.     CrossRef
  • Potential of combined advanced oxidation – Biological process for cost-effective organic matters removal in reverse osmosis concentrate produced from industrial wastewater reclamation: Screening of AOP pre-treatment technologies
    Q.Q. Cai, M.Y. Wu, R. Li, S.H. Deng, B.C.Y. Lee, S.L. Ong, J.Y. Hu
    Chemical Engineering Journal.2020; 389: 123419.     CrossRef
  • Planctomycetes as Host-Associated Bacteria: A Perspective That Holds Promise for Their Future Isolations, by Mimicking Their Native Environmental Niches in Clinical Microbiology Laboratories
    Odilon D. Kaboré, Sylvain Godreuil, Michel Drancourt
    Frontiers in Cellular and Infection Microbiology.2020;[Epub]     CrossRef
  • Bacterial community composition and diversity in the ballast water of container ships arriving at Yangshan Port, Shanghai, China
    Qiong Wang, Fangping Cheng, Junzeng Xue, Nanyan Xiao, Huixian Wu
    Marine Pollution Bulletin.2020; 160: 111640.     CrossRef
  • Improved culture of fastidious Gemmata spp. bacteria using marine sponge skeletons
    Odilon D. Kaboré, Sylvain Godreuil, Michel Drancourt
    Scientific Reports.2019;[Epub]     CrossRef
  • Characterizing microbial diversity and community composition of groundwater in a salt-freshwater transition zone
    Lin Chen, Bill X. Hu, Heng Dai, Xiaoying Zhang, Chuan-An Xia, Jin Zhang
    Science of The Total Environment.2019; 678: 574.     CrossRef
  • Development of a chemically-defined minimal medium for studies on growth and protein uptake of Gemmata obscuriglobus
    Henry P. Mishek, Stephen A. Stock, Jacqueline D.E. Florick, Wilson R. Blomberg, Josef D. Franke
    Journal of Microbiological Methods.2018; 145: 40.     CrossRef
  • Diversity and distribution of anammox bacteria in water column and sediments of the Eastern Indian Ocean
    Gang Qian, Jing Wang, Jinjun Kan, Xiaodong Zhang, Zhiqiang Xia, Xuecheng Zhang, Yanyi Miao, Jun Sun
    International Biodeterioration & Biodegradation.2018; 133: 52.     CrossRef
  • Diversity patterns and isolation of Planctomycetes associated with metalliferous deposits from hydrothermal vent fields along the Valu Fa Ridge (SW Pacific)
    Julia Endresen Storesund, Anders Lanzèn, Antonio García-Moyano, Anna-Louise Reysenbach, Lise Øvreås
    Antonie van Leeuwenhoek.2018; 111(6): 841.     CrossRef
  • Explaining global variation in the latitudinal diversity gradient: Meta‐analysis confirms known patterns and uncovers new ones
    Nicole L. Kinlock, Lisa Prowant, Emily M. Herstoff, Catherine M. Foley, Morodoluwa Akin‐Fajiye, Nicole Bender, Mihir Umarani, Hae Yeong Ryu, Bilgecan Şen, Jessica Gurevitch
    Global Ecology and Biogeography.2018; 27(1): 125.     CrossRef
  • Compartmentalization in PVC super-phylum: evolution and impact
    Sandrine Pinos, Pierre Pontarotti, Didier Raoult, Jean Pierre Baudoin, Isabelle Pagnier
    Biology Direct.2016;[Epub]     CrossRef
  • Gemmata Species: Planctomycetes of Medical Interest
    Rita Aghnatios, Michel Drancourt
    Future Microbiology.2016; 11(5): 659.     CrossRef
  • Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants
    Rita Aghnatios, Caroline Cayrou, Marc Garibal, Catherine Robert, Said Azza, Didier Raoult, Michel Drancourt
    Standards in Genomic Sciences.2015;[Epub]     CrossRef
  • Community composition of thePlanctomycetesassociated with different macroalgae
    Joana Bondoso, Vanessa Balagué, Josep M. Gasol, Olga M. Lage
    FEMS Microbiology Ecology.2014; 88(3): 445.     CrossRef
  • Signature Protein of the PVC Superphylum
    Ilias Lagkouvardos, Marc-André Jehl, Thomas Rattei, Matthias Horn
    Applied and Environmental Microbiology.2014; 80(2): 440.     CrossRef
  • Diversity of Planctomycetes in iron-hydroxide deposits from the Arctic Mid Ocean Ridge (AMOR) and description of Bythopirellula goksoyri gen. nov., sp. nov., a novel Planctomycete from deep sea iron-hydroxide deposits
    Julia E. Storesund, Lise Øvreås
    Antonie van Leeuwenhoek.2013; 104(4): 569.     CrossRef
  • Abundance and diversity of Planctomycetes in a Tyrrhenian coastal system of central Italy
    I Pizzetti, A Gobet, BM Fuchs, R Amann, S Fazi
    Aquatic Microbial Ecology.2011; 65(2): 129.     CrossRef
  • Aquisphaera giovannonii gen. nov., sp. nov., a planctomycete isolated from a freshwater aquarium
    Joana Bondoso, Luciana Albuquerque, M. Fernanda Nobre, Alexandre Lobo-da-Cunha, Milton S. da Costa, Olga Maria Lage
    International Journal of Systematic and Evolutionary Microbiology .2011; 61(12): 2844.     CrossRef
  • Comparison of primer sets for the study of Planctomycetes communities in lentic freshwater ecosystems
    Thomas Pollet, Rémy D. Tadonléké, Jean‐F. Humbert
    Environmental Microbiology Reports.2011; 3(2): 254.     CrossRef
Molecular Characterization of Antibiotic Resistant Escherichia coli Strains Isolated from Tap and Spring Waters in a Coastal Region in Turkey
Osman Birol Ozgumus , Elif Celik-Sevim , Sengul Alpay-Karaoglu , Cemal Sandalli , Ali Sevim
J. Microbiol. 2007;45(5):379-387.
DOI: https://doi.org/2600 [pii]
  • 236 View
  • 0 Download
AbstractAbstract PDF
A hundred and seventeen antibiotic-resistant Escherichia coli strains were isolated from public tap and spring waters which were polluted by fecal coliforms. There were no significant differences between two water sources as to the coliform pollution level (p> 0.05). All E. coli isolates were detected to be resistant to one or more antibiotics tested. Nearly 42% of the isolates showed multiresistant phenotype. Three (2.5%) of these isolates contained class 1 integron. Sequencing analysis of variable regions of the class 1 integrons showed two gene cassette arrays, dfr1-aadA1 and dhfrA17-aadA5. Resistance to ampicillin, tetracycline or trimethoprim-sulfamethoxazole was transferable according to the results of conjugation experiments. The rate of tetracycline resistance was 15%. tet(A)-mediated tetracycline resistance was widespread among tetracycline-resistant E. coli isolates. Genotyping by BOX-polymerase chain reaction (BOX-PCR) showed that some of the strains were epidemiologically related. This is the first report on the prevalence and characterization of class 1 integron-containing E. coli isolates of environmental origin in Turkey.
Dominance of Endospore-forming Bacteria on a Rotating Activated Bacillus Contactor Biofilm for Advanced Wastewater Treatment
Seong Joo Park , Jerng Chang Yoon , Kwang-Soo Shin , Eung Ho Kim , Soobin Yim , Yeon-Je Cho , Gi Moon Sung , Dong-Geun Lee , Seung Bum Kim , Dong-Uk Lee , Sung-Hoon Woo , Ben Koopman
J. Microbiol. 2007;45(2):113-121.
DOI: https://doi.org/2525 [pii]
  • 199 View
  • 0 Download
AbstractAbstract PDF
The bacterial diversity inherent to the biofilm community structure of a modified rotating biological contactor wastewater treatment process, referred to as the Rotating Activated Bacillus Contactor (RABC) process, was characterized in this study, via both culture-dependent and culture-independent methods. On the basis of culture-dependent methods, Bacillus sp. were found to exist in large numbers on the biofilm (6.5% of the heterotrophic bacteria) and the microbial composition of the biofilms was quite simple. Only three phyla were identified-namely, the Proteobacteria, the Actinobacteria (High G+C Gram-positive bacteria), and the Firmicutes (Low G+C Gram-positive bacteria). The culture-independent partial 16S rDNA sequence analysis revealed a considerably more diverse microbial composition within the biofilms. A total of eight phyla were recovered in this case, three of which were major groups: the Firmicutes (43.9%), the Proteobacteria (28.6%), and the Bacteroidetes (17.6%). The remaining five phyla were minor groups: the Planctomycetes (4.4%), the Chlorobi (2.2%), the Actinobacteria (1.1%), the Nitrospirae (1.1%), and the Verrucomicrobia (1.1%). The two most abundant genera detected were the endospore-forming bacteria (31.8%), Clostridium and Bacillus, both of which are members of the Firmicutes phylum. This finding indicates that these endospore-forming bacteria successfully colonized and dominated the RABC process biofilms. Many of the colonies or clones recovered from the biofilms evidenced significantly high homology in the 16S rDNA sequences of bacteria stored in databases associated with advanced wastewater treatment capabilities, including nitrification and denitrification, phosphorus accumulation, the removal of volatile odors, and the removal of chlorohydrocarbons or heavy metals. The microbial community structures observed in the biofilms were found to correlate nicely with the enhanced performance of advanced wastewater treatment protocols.
Comparison of Bacterial Composition between Human Saliva and Dental Unit Water System
Eun-Hyoung Jeon , Ji-Hye Han , Tae-Young Ahn
J. Microbiol. 2007;45(1):1-5.
DOI: https://doi.org/2500 [pii]
  • 218 View
  • 0 Download
AbstractAbstract PDF
The bacterial compositions between the dental unit water system and human saliva were characterized and compared by direct sequence analysis of 16S rDNA clone libraries. Based on the species richness estimation, bacterial diversity in the dental unit water system (DUW) was more diverse than that of the human saliva (HS). The Chao1 estimates of species richness in HS and DUW samples were 12.0 and 72.4, respectively. The total numbers of OTUs observed in the combined libraries accounted for 83% (HS) and 59% (DUW) of the Chao1 diversity estimate as defined at the 80% similarity threshold. Based on the sequence analysis, the phylum Proteobacteria was the major group in both clone libraries at phylum level. DUW clone library contained 80.0% Proteobacteria, 8.0% Bacteroides, 4.0% Nitrospira, 4.0% Firmicutes, 2.0% Planctomycetes and 2.0% Acidobacteria. On the other hand, human saliva (HS) clone library contained 55.5% Proteobacteria, 36.1% Firmicutes and 8.4% Bacteroides. The majority of bacteria identified belonged to phylum Proteobacteria in both samples. In dental unit water system (DUW), Alphaproteobacteria was detected as the major group. There was no evidence of the bacterial contamination due to a dental treatment. Most sequences were related to microorganisms derived from biofilm in oligotrophic environments.
Development of a Virus Concentration Method and its Application for the Detection of Noroviruses in Drinking Water in China
Junyi Liu , Qingping Wu , Xiaoxia Kou
J. Microbiol. 2007;45(1):48-52.
DOI: https://doi.org/2492 [pii]
  • 218 View
  • 0 Download
AbstractAbstract PDF
A new procedure for the concentration of nonoviruses from water samples has been developed. This procedure (calcium flocculation-citrate dissolution method) uses the following steps: virus flocculation formed by treatment with 1 M CaCl2 and 1 M Na2HPO4, virus release by sodium citrate dissolution (0.3 M Na citrate, pH 3.5), and virus re-concentration by ultrafiltration. When reverse transcription (RT)-PCR was performed after the procedure, the overall detection sensitivity for seeded noroviruses in a one liter drinking water sample was as low as 1 RT-PCR unit, which is equal to a 10-6 dilution of the virus sample. This approach showed at least a 5-fold-higher sensitivity than the current method with its three steps of adsorption-elution-concentration. The newly developed procedure was used to test different brands of bottled drinking water from China for putative contamination with noroviruses. A total of 144 samples were analyzed; all of the samples were negative for norovirus specific nucleic acids.
The Diversity of Multi-drug Resistance Profiles in Tetracycline-Resistant Vibrio Species Isolated from Coastal Sediments and Seawater
Farzana Ashrafi Neela , Lisa Nonaka , Satoru Suzuki
J. Microbiol. 2007;45(1):64-68.
DOI: https://doi.org/2489 [pii]
  • 205 View
  • 0 Download
AbstractAbstract PDF
In this study we examined the multi-drug resistance profiles of the tetracycline (TC) resistant genus Vibrio to determine its susceptibility to two β-lactams, ampicillin (ABPC), and mecillinam (MPC), as well as to macrolide, erythromycin (EM). The results showed various patterns of resistance among strains that were isolated from very close geographical areas during the same year, suggesting diverse patterns of drug resistance in environmental bacteria from this area. In addition, the cross-resistance patterns suggested that the resistance determinants among Vibrio spp. are acquired differently within the sediment and seawater environments.
Journal of Microbiology : Journal of Microbiology
© The Microbiological Society of Korea.
TOP