- Erratum] Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments
-
Shengxiang Pei , Siwen Niu , Fuquan Xie , Wenjing Wang , Shuang Zhang , Gaiyun Zhang
-
J. Microbiol. 2021;59(11):1064-1065.
-
DOI: https://doi.org/10.1007/s12275-021-0235-4
-
-
423
View
-
1
Download
-
1
Crossref
-
 PDF
-
-
Citations
Citations to this article as recorded by  -
Brevibacterium koreense sp. nov., a moderately halophilic bacterium isolated from jogae-jeotgal, a Korean fermented seafood
Sohee Nam, Yujin Kim, Min Ji Lee, Yeon Bee Kim, Jeong Ui Yun, Mi-Ja Jung, Hye Seon Song, Se Hee Lee, Seok-Jun Kim, Tae Woong Whon
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef
- Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments
-
Shengxiang Pei , Siwen Niu , Fuquan Xie , Wenjing Wang , Shuang Zhang , Gaiyun Zhang
-
J. Microbiol. 2021;59(10):898-910. Published online September 7, 2021
-
DOI: https://doi.org/10.1007/s12275-021-1235-0
-
-
595
View
-
1
Download
-
11
Web of Science
-
11
Crossref
-
 Abstract
PDF
-
During a study of the marine actinobacterial biodiversity, a
large number of Brevibacterium strains were isolated. Of these,
five that have relatively low 16S rRNA gene similarity (98.5–
99.3%) with validly published Brevibacterium species, were
chosen to determine taxonomic positions. On the basis of 16S
rRNA gene sequence analysis and BOX-PCR fingerprinting,
strains o2T, YB235T, and WO024T were selected as representative
strains. Genomic analyses, including average nucleotide
identity (ANI) and digital DNA-DNA hybridization (dDDH),
clearly differentiated the three strains from each other and
from their closest relatives, with values ranging from 82.8%
to 91.5% for ANI and from 26.7% to 46.5% for dDDH that
below the threshold for species delineation. Strains YB235T,
WO024T, and o2T all exhibited strong and efficient decolorization
activity in congo red (CR) dyes, moderate decolorization
activity in toluidine blue (TB) dyes and poor decolorization
in reactive blue (RB) dyes. Genes coding for peroxidases
and laccases were identified and accounted for these strains’
ability to effectively oxidize a variety of dyes with different
chemical structures. Mining of the whole genome for secondary
metabolite biosynthesis gene clusters revealed the presence
of gene clusters encoding for bacteriocin, ectoine, NRPS,
siderophore, T3PKS, terpene, and thiopeptide. Based on the
phylogenetic, genotypic and phenotypic data, strains o2T,
YB235T and WO024T clearly represent three novel taxa within
the genus Brevibacterium, for which the names Brevibacterium
limosum sp. nov. (type strain o2T = JCM 33844T = MCCC
1A09961T), Brevibacterium pigmenatum sp. nov. (type strain
YB235T = JCM 33843T = MCCC 1A09842T) and Brevibacterium
atlanticum sp. nov. (type strain WO024T = JCM 33846T
= MCCC 1A16743T) are proposed.
-
Citations
Citations to this article as recorded by - Brevibacterium litoralis sp. nov., a cellulose-degrading strain isolated from marine surface sediment
Quan Yang, Aolin Zhao, Haifei Liu, Jiawei Li, Shujing Wu, Ying Huang, Jie Weng, Mingguo Jiang, Yi Jiang
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Comparative analysis of bacterial communities and environmental interactions in seawater and saline-alkali aquaculture ponds for Scylla paramamosain in northern China
Dongping Zhou, Yuanyuan Fu, Lei Liu, Weichuan Lin, Zhibin Lu, Yangfang Ye, Minglei Zhang
Frontiers in Microbiology.2025;[Epub] CrossRef - Functional genomics and taxonomic insights into heavy metal tolerant novel bacterium Brevibacterium metallidurans sp. nov. NCCP-602T isolated from tannery effluent in Pakistan
Sadia Manzoor, Saira Abbas, Sobia Zulfiqar, Hong-Chuan Wang, Min Xiao, Wen-Jun Li, Muhammad Arshad, Iftikhar Ahmed
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Saxibacter everestensis gen. nov., sp. nov., A Novel Member of the Family Brevibacteriaceae, Isolated from the North Slope of Mount Everest
Mao Tian, Shiyu Wu, Wei Zhang, Gaosen Zhang, Xue Yu, Yujie Wu, Puchao Jia, Binglin Zhang, Tuo Chen, Guangxiu Liu
Journal of Microbiology.2024; 62(4): 277. CrossRef - Omics-Based Approaches in Research on Textile Dye Microbial Decolorization
Anna Jasińska, Aleksandra Walaszczyk, Katarzyna Paraszkiewicz
Molecules.2024; 29(12): 2771. CrossRef - Exploring actinobacteria isolated from coral originated from Tulamben Bali in inhibiting multidrug resistance bacteria
Fajar Hidayaturohman, Aninditia Sabdaningsih, Diah Ayuningrum
Asia Pacific Journal of Molecular Biology and Biotechnology.2024; : 101. CrossRef - Comparative Analysis of How the Fecal Microbiota of Green-Winged Saltator (Saltator similis) Diverge among Animals Living in Captivity and in Wild Habitats
Larissa Caló Zitelli, Gabriela Merker Breyer, Mariana Costa Torres, Luiza de Campos Menetrier, Ana Paula Muterle Varela, Fabiana Quoos Mayer, Cláudio Estêvão Farias Cruz, Franciele Maboni Siqueira
Animals.2024; 14(6): 937. CrossRef -
Brevibacterium spongiae sp. nov., isolated from marine sponge Hymeniacidon sp.
Mimi Zhang, Qianqian Song, Jin Sang, Zhiyong Li
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Exploring the biosynthetic gene clusters in Brevibacterium: a comparative genomic analysis of diversity and distribution
Andrés Cumsille, Néstor Serna-Cardona, Valentina González, Fernanda Claverías, Agustina Undabarrena, Vania Molina, Francisco Salvà-Serra, Edward R.B. Moore, Beatriz Cámara
BMC Genomics.2023;[Epub] CrossRef - Identification, characterization, and genome sequencing of Brevibacterium sediminis MG-1 isolate with growth-promoting properties
Marat Tafkilevich Lutfullin, Guzel Fanisovna Lutfullina, Dasha Sergeevna Pudova, Yaw Abayie Akosah, Elena Ilyasovna Shagimardanova, Semyon Germanovich Vologin, Margarita Rashidovna Sharipova, Ayslu Mirkasymovna Mardanova
3 Biotech.2022;[Epub] CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM. Validation List no. 203
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef
- Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria
-
Fuquan Xie , Siwen Niu , Xihuang Lin , Shengxiang Pei , Li Jiang , Yun Tian , Gaiyun Zhang
-
J. Microbiol. 2021;59(10):886-897. Published online September 7, 2021
-
DOI: https://doi.org/10.1007/s12275-021-1186-5
-
-
679
View
-
3
Download
-
14
Web of Science
-
15
Crossref
-
Abstract
PDF
-
We have identified three Microbacterium strains, A18JL200T,
NY27T, and WY121T, that produce C50 carotenoids. Taxonomy
shows they represent three novel species. These strains
shared < 98.5% 16S rRNA gene sequence identity with each
other and were closely related to Microbacterium aquimaris
JCM 15625T, Microbacterium yannicii JCM 18959T, Microbacterium
ureisolvens CFH S00084T, and Microbacterium
hibisci CCTCC AB 2016180T. Digital DNA-DNA hybridization
(dDDH) values and average nucleotide identity (ANI)
showed differences among the three strains and from their
closest relatives, with values ranging from 20.4% to 34.6%
and 75.5% to 87.6%, respectively. These values are below the
threshold for species discrimination. Both morphology and
physiology also differed from those of phylogenetically related
Microbacterium species, supporting that they are indeed novel
species. These strains produce C50 carotenoids (mainly decaprenoxanthin).
Among the three novel species, A18JL200T
had the highest total yield in carotenoids (6.1 mg/L or 1.2 mg/g
dry cell weight). Unusual dual isoprenoid biosynthetic pathways
(methylerythritol phosphate and mevalonate pathways)
were annotated for strain A18JL200T. In summary, we found
strains of the genus Microbacterium that are potential producers
of C50 carotenoids, but their genome has to be investigated
further.
-
Citations
Citations to this article as recorded by - Identification, evaluation, control of yellow-causing bacteria and their influence on the quality of high moisture rice-based food
Sijie Zhang, Lin Ou, Cuiping Yi, Qiutao Xie, Yang Shan
Food Control.2025; 168: 110887. CrossRef - Microbacterium xanthum sp. nov. Isolated from Seaweed, with the Reclassification of Microbacterium ihumii Yacouba et al. 2023 as a Later Heterotypic Synonym of Microbacterium tenebrionis Lee and Kim 2023
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Current Microbiology.2025;[Epub] CrossRef - Description of Microbacterium luticellae sp. nov., Microbacterium alcoholitolerans sp. nov. and Microbacterium daqui sp. nov. isolated from baijiu pit mud and daqu
Mingkai Tian, Ye Lu, Xinyu Liu, Yi Yan, Jialiang Xu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Chlamydomonas reinhardtii and Microbacterium forte sp. nov., a mutualistic association that favors sustainable hydrogen production
Neda Fakhimi, María Jesus Torres, Emilio Fernández, Aurora Galván, Alexandra Dubini, David González-Ballester
Science of The Total Environment.2024; 913: 169559. CrossRef - Discovery of a new bacterium, Microbacterium betulae sp. nov., in birch wood associated with hypersensitivity pneumonitis in woodworkers
Mariola Paściak, Krzysztof J. Pawlik, Dariusz Martynowski, Łukasz Łaczmański, Jarosław Ciekot, Bogumiła Szponar, Angelina Wójcik‐Fatla, Barbara Mackiewicz, Ewelina Farian, Grażyna Cholewa, Alicja Cholewa, Jacek Dutkiewicz
Environmental Microbiology Reports.2024;[Epub] CrossRef - Microbacterium aquilitoris sp. nov. and Microbacterium gwkjiense sp. nov., isolated from beach
Soon Dong Lee, Hong Lim Yang, Ji-Sun Kim, In Seop Kim
Archives of Microbiology.2024;[Epub] CrossRef -
Microbacterium algihabitans sp. nov., Microbacterium phycohabitans sp. nov., and Microbacterium galbum sp. nov., isolated from dried beach seaweeds
Soon Dong Lee, Hong Lim Yang, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Association between the gut microbiome and carotenoid plumage phenotype in an avian hybrid zone
Marcella D. Baiz, Andrew W. Wood, David P. L. Toews
Proceedings of the Royal Society B: Biological Sciences.2024;[Epub] CrossRef - Description of Microbacterium dauci sp. nov., a plant growth hormone indoleacetic acid-producing and nitrogen-fixing bacterium isolated from carrot rhizosphere soil
Jiawen Zheng, Yunyu Liao, Yang Li, Dongsheng Li, Yaping Sun, Zijun Xiao
Archives of Microbiology.2024;[Epub] CrossRef - Can Sugarcane Yield and Health Be Altered with Fully Mechanized Management?
Jian Xiao, Tian Liang, Shangdong Yang, Hongwei Tan
Agronomy.2023; 13(1): 153. CrossRef - Evaluation of Various Escherichia coli Strains for Enhanced Lycopene Production
Jun Ren, Junhao Shen, Thi Duc Thai, Min-gyun Kim, Seung Ho Lee, Wonseop Lim, Dokyun Na
Journal of Microbiology and Biotechnology.2023; 33(7): 973. CrossRef - Effects of flavonoids on membrane adaptation of food-associated bacteria
Maria Linden, Alexander Flegler, Michelle M. Feuereisen, Fabian Weber, André Lipski, Andreas Schieber
Biochimica et Biophysica Acta (BBA) - Biomembranes.2023; 1865(4): 184137. CrossRef - Four new Microbacterium species isolated from seaweeds and reclassification of five Microbacterium species with a proposal of Paramicrobacterium gen. nov. under a genome-based framework of the genus Microbacterium
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Frontiers in Microbiology.2023;[Epub] CrossRef - Microbacterium Cluster EA Bacteriophages: Phylogenomic Relationships and Host Range Predictions
Mark Milhaven, Cyril J. Versoza, Aman Garg, Lindsey Cai, Sanjana Cherian, Kamalei Johnson, Kevin Salas Perez, Madison Blanco, Jackelyn Lobatos, Corinne Mitra, Maria Strasser, Susanne P. Pfeifer
Microorganisms.2023; 11(1): 170. CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM. Validation List no. 203
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef
|
MSK
