- Mycorrhizal Fungal Diversity Associated with Six Understudied Ectomycorrhizal Trees in the Republic of Korea
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Ki Hyeong Park , Seung-Yoon Oh , Yoonhee Cho , Chang Wan Seo , Ji Seon Kim , Shinnam Yoo , Jisun Lim , Chang Sun Kim , Young Woon Lim
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J. Microbiol. 2023;61(8):729-739. Published online September 4, 2023
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DOI: https://doi.org/10.1007/s12275-023-00073-1
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306
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Mycorrhizal fungi are key components of forest ecosystems and play essential roles in host health. The host specificity of
mycorrhizal fungi is variable and the mycorrhizal fungi composition for the dominant tree species is largely known but
remains unknown for the less common tree species. In this study, we collected soil samples from the roots of six understudied
ectomycorrhizal tree species from a preserved natural park in the Republic of Korea over four seasons to investigate the
host specificity of mycorrhizal fungi in multiple tree species, considering the abiotic factors. We evaluated the mycorrhizal
fungal composition in each tree species using a metabarcoding approach. Our results revealed that each host tree species
harbored unique mycorrhizal communities, despite close localization. Most mycorrhizal taxa belonged to ectomycorrhizal
fungi, but a small proportion of ericoid mycorrhizal fungi and arbuscular mycorrhizal fungi were also detected. While common
mycorrhizal fungi were shared between the plant species at the genus or higher taxonomic level, we found high host
specificity at the species/OTU (operational taxonomic unit) level. Moreover, the effects of the seasons and soil properties
on the mycorrhizal communities differed by tree species. Our results indicate that mycorrhizal fungi feature host-specificity
at lower taxonomic levels.
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Citations
Citations to this article as recorded by  - Effects of elevated temperatures on soil enzymatic activities and bacterial and fungal community composition and diversity
Precious Mutambara, Kabwe Nkongolo
Ecological Genetics and Genomics.2025; 36: 100382. CrossRef
- Root-associated bacteria influencing mycelial growth of Tricholoma matsutake (pine mushroom)
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Seung-Yoon Oh , Young Woon Lim
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J. Microbiol. 2018;56(6):399-407. Published online June 1, 2018
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DOI: https://doi.org/10.1007/s12275-018-7491-y
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478
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30
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Abstract
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Tricholoma matsutake is an ectomycorrhizal fungus usually
associated with Pinus densiflora in South Korea. Fruiting
bodies (mushrooms) of T. matsutake are economically important
due to their attractive aroma; yet, T. matsutake is
uncultivatable and its habitat is rapidly being eradicated due
to global climate change. Root-associated bacteria can influence
the growth of ectomycorrhizal fungi that co-exist in the
host rhizosphere and distinctive bacterial communities are
associated with T. matsutake. In this study, we investigated
how these bacterial communities affect T. matsutake growth
by isolating bacteria from the roots of P. densiflora colonized
by ectomycorrhizae of T. matsutake and co-culturing rootassociated
bacteria with T. matsutake isolates. Thirteen species
of bacteria (27 isolates) were found in pine roots, all
belonging to the orders Bacillales or Burkholderiales. Two
species in the genus Paenibacillus promoted the growth of
T. matsutake in glucose poor conditions, likely using soluble
metabolites. In contrast, other bacteria suppressed the growth
of T. matsutake using both soluble and volatile metabolites.
Antifungal activity was more frequent in glucose poor conditions.
In general, pine rhizospheres harbored many bacteria
that had a negative impact on T. matsutake growth and the
few Paenibacillus species that promoted T. matsutake growth.
Paenibacillus species, therefore, may represent a promising
resource toward successful cultivation of T. matsutake.
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Citations
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Soil Chemistry and Microbial Community Patterns Across
Tricholoma matsutake
Fairy-Ring Developmental Stages in Yeongju, South Korea
Na-Kyung Kang, Min-Jeong Kang, Gi-Bum Keum, Chanhoon An, Eung-Jun Park, Eun-Kyung Bae
Mycobiology.2026; 54(1): 78. CrossRef - Co-inoculation with rhizobacterial community and an ectomycorrhizal fungus promotes poplar ectomycorrhization
Haiyun Zi, Yun Wang, Yangwenke Liao, Shuikuan Bei, Jinchi Zhang, Xiaogang Li
Applied Soil Ecology.2025; 206: 105833. CrossRef - Extraction of total flavonoids from Chaenomeles speciosa (Sweet) Nakai and its antioxidant and lipoxygenase inhibition effects
Wenqing Pei, Yuting Sun, Juan Li, Yupei Zhang, Chenkang Jian, Feng Lu, Ali Tao, Qizhao Li, José M. Alvarez-Suarez
PLOS ONE.2025; 20(4): e0320582. CrossRef - Multi-meta-omics reveal unique symbiotic synchronization between ectomycorrhizal fungus and soil microbiome in Tricholoma matsutake habitat
In Hyup Bae, Hyun Kim, Su-Min Kim, Yong-Hwan Lee
Microbiome.2025;[Epub] CrossRef - Cultivable Root-Symbiotic Bacteria of a Pioneer Ericaceous Dwarf Shrub Colonizing Volcanic Deposits and Their Potential to Promote host Fitness
Alejandra Fuentes-Quiroz, Héctor Herrera, Roxana Alvarado, Cristiane Sagredo-Saez, Maria Isabel-Mujica, Martin Vohník, Eleonora Rolli
Journal of Soil Science and Plant Nutrition.2024; 24(2): 3355. CrossRef - Commodity chain as a negotiated process: Empirical analysis of benefit allocation, governance, and powers of upstream and downstream actors in matsutake mushroom trade in Shangri-La, Yunnan Province
Xinyang Li, Jinlong Liu, Ryo Kohsaka
Trees, Forests and People.2024; 17: 100618. CrossRef - Effect of bacterial volatiles on the mycelial growth of mushrooms
Axel Orban, Jeanny Jaline Jerschow, Florian Birk, Christian Suarez, Sylvia Schnell, Martin Rühl
Microbiological Research.2023; 266: 127250. CrossRef - Performance of leaf extract media in culturing mycorrhizal mushroom mycelium
Alec Mlambo, Mcebisi Maphosa
South African Journal of Science.2023;[Epub] CrossRef -
Promotion of
Tricholoma matsutake
mycelium growth by
Penicillium citreonigrum
Doo-Ho Choi, Jae-Gu Han, Kang-Hyo Lee, An Gi-Hong
Mycobiology.2023; 51(5): 354. CrossRef - Draft Genome Sequence for the Symbiotic Pine Mushroom Tricholoma matsutake
Min-Jeong Kang, Eun-Kyung Bae, Eung-Jun Park, Kang-Hyeon Ka, Mi-Ra Son, Ki-Tae Kim, Jei-Wan Lee, Jason E. Stajich
Microbiology Resource Announcements.2023;[Epub] CrossRef - Species composition of root-associated mycobiome of ruderal invasive Anthemis cotula L. varies with elevation in Kashmir Himalaya
Afshana, Zafar A. Reshi, Manzoor A. Shah, Rayees A. Malik, Irfan Rashid
International Microbiology.2023; 26(4): 1053. CrossRef - Responses of Bacterial Community Structure, Diversity, and Chemical Properties in the Rhizosphere Soil on Fruiting-Body Formation of Suillus luteus
Yixin Zhou, Zhichao Shi, Qiliang Pang, Xiufeng Liang, Hongtao Li, Xin Sui, Chongwei Li, Fuqiang Song
Microorganisms.2022; 10(10): 2059. CrossRef - Isolation, genomic characterization, and mushroom growth-promoting effect of the first fungus-derived Rhizobium
Zhongyi Hua, Tianrui Liu, Pengjie Han, Junhui Zhou, Yuyang Zhao, Luqi Huang, Yuan Yuan
Frontiers in Microbiology.2022;[Epub] CrossRef - Fairy ring‐induced soil potassium depletion gradients reshape microbial community composition in a montane grassland
Antonio Rodríguez, Mercedes Ibáñez, Roland Bol, Nicolas Brüggemann, Agustín Lobo, Juan José Jimenez, Liliane Ruess, M.‐Teresa Sebastià
European Journal of Soil Science.2022;[Epub] CrossRef - Isolation, Identification, and Analysis of Potential Functions of Culturable Bacteria Associated with an Invasive Gall Wasp, Leptocybe invasa
Yipeng Liu, Letian Xu, Zhouqiong Zhang, Zongyou Huang, Dongxue Fang, Xialin Zheng, Zhende Yang, Min Lu
Microbial Ecology.2022; 83(1): 151. CrossRef - The history and distribution of nodulating Paraburkholderia, a potential inoculum for Fynbos forage species
Chrizelle W. Beukes, Stephanus N. Venter, Emma T. Steenkamp
Grass and Forage Science.2021; 76(1): 10. CrossRef - Changes in soil bacteria functional ecology associated with Morchella rufobrunnea fruiting in a natural habitat
Ezra Orlofsky, Limor Zabari, Gregory Bonito, Segula Masaphy
Environmental Microbiology.2021; 23(11): 6651. CrossRef - Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil
Fei Yu, Jun-Feng Liang, Jie Song, Sheng-Kun Wang, Jun-Kun Lu
Frontiers in Microbiology.2020;[Epub] CrossRef - Bioactive properties of streptomyces may affect the dominance of Tricholoma matsutake in shiro
Lu-Min Vaario, Shumpei Asamizu, Tytti Sarjala, Norihisa Matsushita, Hiroyasu Onaka, Yan Xia, Hiroyuki Kurokochi, Shin-Ichi Morinaga, Jian Huang, Shijie Zhang, Chunlan Lian
Symbiosis.2020; 81(1): 1. CrossRef - Global patterns and determinants of bacterial communities associated with ectomycorrhizal root tips of Alnus species
Farzad Aslani, Leho Tedersoo, Sergei Põlme, Oliver Knox, Mohammad Bahram
Soil Biology and Biochemistry.2020; 148: 107923. CrossRef - Comparative analysis of transcriptomes revealed the molecular mechanism of development of Tricholoma matsutake at different stages of fruiting bodies
Xian Tang, Xiang Ding, Yi-ling Hou
Food Science and Biotechnology.2020; 29(7): 939. CrossRef - Effects of bacterial strains isolated from the ectomycorrhizal roots of Laccaria parva on sporocarp production by the fungus in vitro
Keisuke Obase
Mycoscience.2020; 61(1): 9. CrossRef - Advances in the cultivation of the highly-prized ectomycorrhizal mushroom Tricholoma matsutake
Takashi Yamanaka, Akiyoshi Yamada, Hitoshi Furukawa
Mycoscience.2020; 61(2): 49. CrossRef - Biological and chemical diversity go hand in hand: Basidiomycota as source of new pharmaceuticals and agrochemicals
Birthe Sandargo, Clara Chepkirui, Tian Cheng, Lillibeth Chaverra-Muñoz, Benjarong Thongbai, Marc Stadler, Stephan Hüttel
Biotechnology Advances.2019; 37(6): 107344. CrossRef - The mycobiota: fungi take their place between plants and bacteria
Paola Bonfante, Francesco Venice, Luisa Lanfranco
Current Opinion in Microbiology.2019; 49: 18. CrossRef - Paraburkholderia lacunae sp. nov., isolated from soil near an artificial pond
Tingye Feng, Sang Eun Jeong, Jin Ju Lim, Seogang Hyun, Che Ok Jeon
Journal of Microbiology.2019; 57(4): 232. CrossRef - The Influence of Microfungi on the Mycelial Growth of Ectomycorrhizal Fungus Tricholoma matsutake
Seung-Yoon Oh, Myung Soo Park, Young Woon Lim
Microorganisms.2019; 7(6): 169. CrossRef - Mycorrhizosphere Bacterial Communities and their Sensitivity to Antibacterial Activity of Ectomycorrhizal Fungi
Makoto Shirakawa, Iwao Uehara, Megumi Tanaka
Microbes and Environments.2019; 34(2): 191. CrossRef - Extending the hyphal area of the ectomycorrhizal fungus Laccaria parva co-cultured with ectomycorrhizosphere bacteria on nutrient agar plate
Keisuke Obase
Mycoscience.2019; 60(2): 95. CrossRef - Diversity and effect of Trichoderma isolated from the roots of Pinus densiflora within the fairy ring of pine mushroom (Tricholoma matsutake)
Seung-Yoon Oh, Myung Soo Park, Hae Jin Cho, Young Woon Lim, Sung-Hwan Yun
PLOS ONE.2018; 13(11): e0205900. CrossRef
- Diversity of fungi associated with roots of Calanthe orchid species in Korea
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Myung Soo Park , John A. Eimes , Sang Hoon Oh , Hwa Jung Suh , Seung-Yoon Oh , Seobihn Lee , Ki Hyeong Park , Hyuk Joon Kwon , Soo-Young Kim , Young Woon Lim
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J. Microbiol. 2018;56(1):49-55. Published online January 4, 2018
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DOI: https://doi.org/10.1007/s12275-018-7319-9
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413
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11
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Abstract
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While symbiotic fungi play a key role in the growth of endangered
Calanthe orchid species, the relationship between
fungal diversity and Calanthe species remains unclear. Here,
we surveyed root associated fungal diversity of six Calanthe
orchid species by sequencing the internal transcribed spacer
(ITS) region using 454 pyrosequencing. Our results revealed
that Paraboeremia and Coprinopsis are dominant fungal genera
among Calanthe species. In terms of overall relative abundance,
Paraboeremia was the most common fungal genus associated
with Calanthe roots, followed by Coprinopsis. Overall
fungal diversity showed a significant degree of variation depending
on both location and Calanthe species. In terms of
number of different fungal genera detected within Calanthe
species, C. discolor had the most diverse fungal community,
with 10 fungal genera detected. This study will contribute toward
a better understanding of those fungi that are required
for successful cultivation and conservation of Korean Calanthe
species.
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Citations
Citations to this article as recorded by - Preliminary Assessment of Mycobiome at Former Quarry Site That Hosts a Diverse and Abundant Orchid Population
Viswambharan Sarasan, Dean Williams, Zoe Ringwood
Microorganisms.2025; 13(10): 2390. CrossRef - Culture conditions of symbiotic fungus Coprinellus radians and its effects on seedlings of Cremastra appendiculata (D.Don.) Makino (Orchidaceae)
Liqin Wang, Jingyi Zhang, Qiuyu Lv, Gonggu Lv, Guangquan Lv, Xin Xiao, Fulin Yan, Miao Liu, Mingsheng Zhang
Canadian Journal of Plant Science.2025; 105: 1. CrossRef -
Whole chloroplast genome sequence and phylogenetic analysis of
Calanthe discolor
(Orchidaceae)
Qiuping Liu, Qin Song, Yan Yu, Yiming Shi, Minghui Lu, Yan Chen, Leitao Tan
Mitochondrial DNA Part B.2024; 9(10): 1345. CrossRef - The rhizosphere microbiome and its influence on the accumulation of metabolites in Bletilla striata (Thunb.) Reichb. f
Shiqing Li, Xiaomei Li, Yueyu Ye, Man Chen, Haimin Chen, Dongfeng Yang, Meiya Li, Fusheng Jiang, Xiaobo Zhang, Chunchun Zhang
BMC Plant Biology.2024;[Epub] CrossRef - Geographic location shapes fungal communities associated with Epidendrum roots
Tiphany Nkomo, Tanay Bose, Brenda D. Wingfield, Rosa Knoppersen, Ongeziwe Mbhele, Miguel Nemesio-Gorriz, Carlos A. Rodas, Christian Paetz, Cornelius T. Cilliers, Maria A. Ferreira, Almuth Hammerbacher
Mycological Progress.2024;[Epub] CrossRef - Ethnobotany, phytochemistry, pharmacology, and conservation of the genus Calanthe R. Br. (Orchidaceae)
Consolata Nanjala, Jing Ren, Fredrick Munyao Mutie, Emmanuel Nyongesa Waswa, Elizabeth Syowai Mutinda, Wyclif Ochieng Odago, Moses Mutuse Mutungi, Guang-Wan Hu
Journal of Ethnopharmacology.2022; 285: 114822. CrossRef - Current Insight into Traditional and Modern Methods in Fungal Diversity Estimates
Ajay Kumar Gautam, Rajnish Kumar Verma, Shubhi Avasthi, Sushma, Yogita Bohra, Bandarupalli Devadatha, Mekala Niranjan, Nakarin Suwannarach
Journal of Fungi.2022; 8(3): 226. CrossRef - Fungal diversity driven by bark features affects phorophyte preference in epiphytic orchids from southern China
Lorenzo Pecoraro, Hanne N. Rasmussen, Sofia I. F. Gomes, Xiao Wang, Vincent S. F. T. Merckx, Lei Cai, Finn N. Rasmussen
Scientific Reports.2021;[Epub] CrossRef - Heavy metal tolerance of orchid populations growing on abandoned mine tailings: A case study in Sardinia Island (Italy)
Antonio De Agostini, Claudia Caltagirone, Alberto Caredda, Angela Cicatelli, Annalena Cogoni, Domenica Farci, Francesco Guarino, Alessandra Garau, Massimo Labra, Michele Lussu, Dario Piano, Cinzia Sanna, Nicola Tommasi, Andrea Vacca, Pierluigi Cortis
Ecotoxicology and Environmental Safety.2020; 189: 110018. CrossRef - GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies
Tomáš Větrovský, Daniel Morais, Petr Kohout, Clémentine Lepinay, Camelia Algora, Sandra Awokunle Hollá, Barbara Doreen Bahnmann, Květa Bílohnědá, Vendula Brabcová, Federica D’Alò, Zander Rainier Human, Mayuko Jomura, Miroslav Kolařík, Jana Kvasničková, Sa
Scientific Data.2020;[Epub] CrossRef - Fungal colonization associated with phenological stages of a photosynthetic terrestrial temperate orchid from the Southern Iberian Peninsula
Irene Herrera-Rus, Julio E. Pastor, Rocío Juan
Journal of Plant Research.2020; 133(6): 807. CrossRef
- Diversity and enzyme activity of Penicillium species associated with macroalgae in Jeju Island
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Myung Soo Park , Seobihn Lee , Seung-Yoon Oh , Ga Youn Cho , Young Woon Lim
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J. Microbiol. 2016;54(10):646-654. Published online September 30, 2016
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DOI: https://doi.org/10.1007/s12275-016-6324-0
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510
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18
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A total of 28 strains of 19 Penicillium species were isolated in
a survey of extracellular enzyme-producing fungi from macroalgae
along the coast of Jeju Island of Korea. Penicillium
species were identified based on morphological and β-tubulin
sequence analyses. In addition, the halo-tolerance and enzyme
activity of all strains were evaluated. The diversity of
Penicillium strains isolated from brown algae was higher than
the diversity of strains isolated from green and red algae.
The commonly isolated species were Penicillium antarcticum,
P. bialowiezense, P. brevicompactum, P. crustosum, P. oxalicum,
P. rubens, P. sumatrense, and P. terrigenum. While many
strains showed endoglucanase, β-glucosidase, and protease
activity, no alginase activity was detected. There was a positive
correlation between halo-tolerance and endoglucanase
activity within Penicillium species. Among 19 Penicillium
species, three species–P. kongii, P. olsonii, and P. viticola–
have not been previously recorded in Korea.
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Citations
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Expanding the Inventory of Seven Unrecorded Marine
Penicillium
with Morphological Descriptions and Phenotypic Variability
Wonjun Lee, Ji Seon Kim, Sumin Jo, Young Woon Lim
Mycobiology.2025; 53(5): 648. CrossRef - Plastic-inhabiting fungi in marine environments and PCL degradation activity
Sung Hyun Kim, Jun Won Lee, Ji Seon Kim, Wonjun Lee, Myung Soo Park, Young Woon Lim
Antonie van Leeuwenhoek.2022; 115(12): 1379. CrossRef - Marine fungal abilities to enzymatically degrade algal polysaccharides, proteins and lipids: a review
Yoran Le Strat, Nicolas Ruiz, Joël Fleurence, Yves-François Pouchus, Paul Déléris, Justine Dumay
Journal of Applied Phycology.2022; 34(3): 1131. CrossRef - Characterization of two 1,3-β-glucan-modifying enzymes from Penicillium sumatraense reveals new insights into 1,3-β-glucan metabolism of fungal saprotrophs
Valentina Scafati, Francesca Troilo, Sara Ponziani, Moira Giovannoni, Anna Scortica, Daniela Pontiggia, Francesco Angelucci, Adele Di Matteo, Benedetta Mattei, Manuel Benedetti
Biotechnology for Biofuels and Bioproducts.2022;[Epub] CrossRef - Four Unrecorded Aspergillus Species from the Rhizosphere Soil in South Korea
Jun Won Lee, Sung Hyun Kim, Young-Hyun You, Young Woon Lim, Myung Soo Park
Mycobiology.2021; 49(4): 346. CrossRef - Advances in research on calf rennet substitutes and their effects on cheese quality
Xiaofeng Liu, Yuanfeng Wu, Rongfa Guan, Guochao Jia, YuChen Ma, Yao Zhang
Food Research International.2021; 149: 110704. CrossRef - Mutation, Chemoprofiling, Dereplication, and Isolation of Natural Products from Penicillium oxalicum
Vidushi Abrol, Manoj Kushwaha, Divya Arora, Sharada Mallubhotla, Sundeep Jaglan
ACS Omega.2021; 6(25): 16266. CrossRef - Evaluating the xerophilic potential of moulds on selected egg tempera paints on glass and wooden supports using fluorescent microscopy
Janez Kosel, Maša Kavčič, Lea Legan, Klara Retko, Polonca Ropret
Journal of Cultural Heritage.2021; 52: 44. CrossRef - Dietary effects on gut microbiota of the mesquite lizard Sceloporus grammicus (Wiegmann, 1828) across different altitudes
Nina Montoya-Ciriaco, Selene Gómez-Acata, Ligia Catalina Muñoz-Arenas, Luc Dendooven, Arturo Estrada-Torres, Aníbal H. Díaz de la Vega-Pérez, Yendi E. Navarro-Noya
Microbiome.2020;[Epub] CrossRef - Penicillium from Rhizosphere Soil in Terrestrial and Coastal Environments in South Korea
Myung Soo Park, Jun Won Lee, Sung Hyun Kim, Ji-Hyun Park, Young-Hyun You, Young Woon Lim
Mycobiology.2020; 48(6): 431. CrossRef - Three Unrecorded Species Belonging toPenicilliumSectionSclerotiorafrom Marine Environments in Korea
Myung Soo Park, Dawoon Chung, Kyunghwa Baek, Young Woon Lim
Mycobiology.2019; 47(2): 165. CrossRef - Fungal Diversity and Enzyme Activity Associated with the Macroalgae, Agarum clathratum
Seobihn Lee, Myung Soo Park, Hanbyul Lee, Jae-Jin Kim, John A. Eimes, Young Woon Lim
Mycobiology.2019; 47(1): 50. CrossRef - Biodiversity of Penicillium species from marine environments in Portugal and description of Penicillium lusitanum sp. nov., a novel species isolated from sea water
Micael F. M. Gonçalves, Liliana Santos, Bruno M. V. Silva, Alberto C. Abreu, Tânia F. L. Vicente, Ana C. Esteves, Artur Alves
International Journal of Systematic and Evolutionary Microbiology.2019; 69(10): 3014. CrossRef - Taxonomic revision of the biotechnologically important species Penicillium oxalicum with the description of two new species from acidic and saline soils
Alena Kubátová, Martina Hujslová, Jens C. Frisvad, Milada Chudíčková, Miroslav Kolařík
Mycological Progress.2019; 18(1-2): 215. CrossRef - The diversity and ecological roles of Penicillium in intertidal zones
Myung Soo Park, Seung-Yoon Oh, Jonathan J. Fong, Jos Houbraken, Young Woon Lim
Scientific Reports.2019;[Epub] CrossRef - Fungal Root Microbiome from Healthy and Brittle Leaf Diseased Date Palm Trees (Phoenix dactylifera L.) Reveals a Hidden Untapped Arsenal of Antibacterial and Broad Spectrum Antifungal Secondary Metabolites
Fedia B. Mefteh, Amal Daoud, Ali Chenari Bouket, Faizah N. Alenezi, Lenka Luptakova, Mostafa E. Rateb, Adel Kadri, Neji Gharsallah, Lassaad Belbahri
Frontiers in Microbiology.2017;[Epub] CrossRef - Species List of Aspergillus, Penicillium and Talaromyces in Korea, Based on ‘One Fungus One Name’ System
The Korean Journal of Mycology.2016;[Epub] CrossRef
- Species Delimitation of Three Species within the Russula Subgenus Compacta in Korea: R. eccentrica, R. nigricans, and R. subnigricans
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Myung Soo Park , Hyun Lee , Seung-Yoon Oh , Paul Eunil Jung , Soon Ja Seok , Jonathan J. Fong , Young Woon Lim
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J. Microbiol. 2014;52(8):631-638. Published online July 4, 2014
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DOI: https://doi.org/10.1007/s12275-014-4168-z
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498
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Distinguishing individual Russula species can be very difficult due to extensive phenotypic plasticity and obscure morphological and anatomical discontinuities. In this study, we use the internal transcribed spacer (ITS) and 28S nuclear ribosomal large subunit (LSU) markers to identify and study the genetic diversity of species in the Russula subgenus Compacta in Korea. We focus on two morphologically similar
species that are often misidentified for each other: R. nigricans and R. subnigricans. Based on molecular phylogenetic analyses, we identify three subgroups of R. nigricans, with two from Asia and one from Europe/North America. Surprisingly, we find Korean R. subnigricans are more closely related to R. eccentrica from North America than the type specimen of R. subnigricans from Japan. These molecular
data, along with habitat data, reveal that Korean R. subnigricans had previously been misclassified and should now be recognized as R. eccentrica. Both ITS and LSU exhibit high interspecific and low intraspecific variation for R. eccentrica, R. nigricans, and R. subnigricans. These markers provide enough resolutional power to differentiate these species and uncover phylogeographic structure, and will be powerful tools for future ecological studies of Russula.
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Citations
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Zhiyong Zhao, Lanxin Zhao, Enjing Tian, Fenshuang Zheng, Hengchao E, Xiaoyan Zhao, Changyan Zhou
Microchemical Journal.2025; 211: 113100. CrossRef - Mortality Cases of Mushroom Poisoning with Russula subnigricans
Mo Se Chun, Mun Ki Min, Ji Ho Ryu, Dae Sub Lee, Min Jee Lee, Taegyu Hyun, Seung Woo Shon
Wilderness & Environmental Medicine.2023; 34(3): 372. CrossRef - Clarifying the identity of marketed edible Huotanjun (Burnt Charcoal Mushroom) in southern China
Lian-hui Huang, Jing Wang, Shu-hong Li, Wei-qiang Qin, Hai-jiao Li, Xiang-hua Wang
Mycological Progress.2023;[Epub] CrossRef -
Microstoma Ningshanica
, a new species of
Microstoma
based on molecular, light and scanning electron microscopy analyses from Shaanxi Province, China
Wenyan Huo, Liguang Zhang, Yu Liu, Xuelian He, Peng Qi, Lu Dai, Ting Qiao, Peng Lu, Junzhi Li
All Life.2022; 15(1): 901. CrossRef - Seven Unrecorded Indigenous Fungi from Mudeungsan National Park in Korea
Minseo Cho, Sun Lul Kwon, Young Mok Heo, Young Min Lee, Hanbyul Lee, Changmu Kim, Byoung Jun Ahn, Jae-Jin Kim
Mycobiology.2022; 50(4): 203. CrossRef - Morphological Characteristics and Phylogeny Reveal Six New Species in Russula Subgenus Russula (Russulaceae, Russulales) from Yanshan Mountains, North China
Hao Zhou, Gui-Qiang Cheng, Qiu-Tong Wang, Mei-Jun Guo, Lan Zhuo, Hui-Fang Yan, Guo-Jie Li, Cheng-Lin Hou
Journal of Fungi.2022; 8(12): 1283. CrossRef - Description of the Fifth New Species of Russula subsect. Maculatinae from Pakistan Indicates Local Diversity Hotspot of Ectomycorrhizal Fungi in Southwestern Himalayas
Munazza Kiran, Miroslav Caboň, Dušan Senko, Abdul Nasir Khalid, Slavomír Adamčík
Life.2021; 11(7): 662. CrossRef - Three Novel Species of Russula Pers. Subg. Compactae (Fr.) Bon from Dinghushan Biosphere Reserve in Southern China
Songyan Zhou, Yu Song, Kaixing Chen, Jingwei Li, Bart Buyck, Lihong Qiu
Cryptogamie, Mycologie.2020;[Epub] CrossRef - The community composition variation of Russulaceae associated with the Quercus mongolica forest during the growing season at Wudalianchi City, China
Pengjie Xing, Yang Xu, Tingting Gao, Guanlin Li, Jijiang Zhou, Mengle Xie, Ruiqing Ji
PeerJ.2020; 8: e8527. CrossRef - Hypomyces pseudolactifluorum sp. nov. (Hypocreales: Hypocreaceae) on Russula sp. from Yunnan, PR China
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Seung-Yoon Oh , Jonathan J. Fong , Myung Soo Park , Limseok Chang , Young Woon Lim
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J. Microbiol. 2014;52(6):465-472. Published online April 11, 2014
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DOI: https://doi.org/10.1007/s12275-014-3550-1
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Fungal spores are widespread and common in the atmosphere. In this study, we use a metagenomic approach to study the fungal diversity in six total air samples collected from April to May 2012 in Seoul, Korea. This springtime period is important in Korea because of the peak in fungal spore concentration and Asian dust storms, although the year of this study (2012) was unique in that were no major Asian dust events. Clustering sequences for operational taxonomic unit (OTU) identification recovered 1,266 unique OTUs in the combined dataset, with between 223-396 OTUs present in individual samples. OTUs from three fungal phyla were identified. For Ascomycota, Davidiella (anamorph: Cladosporium) was the most common genus in all samples, often accounting for more than 50% of all sequences in a sample. Other common Ascomycota genera identified were Alternaria, Didymella, Khuskia, Geosmitha, Penicillium, and Aspergillus. While several Basidiomycota genera were observed, Chytridiomycota OTUs were only present in one sample. Consistency was observed within sampling days, but there was a large shift in species composition from Ascomycota dominant to Basidiomycota dominant in the middle of the sampling period. This marked change may have been caused by meteorological events. A potential set of 40 allergyinducing genera were identified, accounting for a large proportion of the diversity present (22.5–77.2%). Our study identifies high fungal diversity and potentially high levels of fungal allergens in springtime air of Korea, and provides a good baseline for future comparisons with Asian dust storms.
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