Journal of Microbiology

Qing-Mei Liu

5 Articles

Mucilaginibacter ginsenosidivorax sp. nov., with Ginsenoside Converting Activity Isolated from Sediment: Jin-Kwang Kim , Tae-Eun Choi , Qing-Mei Liu , Hye-Yoon Park , Tae-Hoo Yi , Min-Ho Yoon , Sun-Chang Kim , Wan-Taek Im; J. Microbiol. 2013;51(3):394-399. Published online June 28, 2013; DOI: https://doi.org/10.1007/s12275-013-2653-4

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A Gram-reaction-negative, strictly aerobic, non-motile, nonspore-forming, and rod-shaped bacterial strain designated KHI28T was isolated from sediment in Gapcheon (river) and its taxonomic position was investigated using a polyphasic approach. Strain KHI28T grew at 10–42°C and at pH 5.5–8.5 on R2A and nutrient agar without additional NaCl as a supplement. Strain KHI28T possessed β-glucosidase activity, which was responsible for its ability to transform ginsenosides Rb1 and Re (ones of the dominant active components of ginseng) to C-K and Rg2, respectively. On the basis of 16S rRNA gene sequence similarity, strain KHI28T was shown to belong to the family Sphingobacteriaceae and to be related to Mucilaginibacter dorajii DR-f4T (97.9% sequence similarity), M. polysacchareus DRP28T (97.3%), and M. lappiensis ANJLI2 T (97.2%). The G+C content of the genomic DNA was 45.8%. The predominant respiratory quinone was MK-7 and the major fatty acids were summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c), iso-C15:0 and C16:0. DNA and chemotaxonomic data supported the affiliation of strain KHI28T to the genus Mucilaginibacter. Strain KHI28T could be differentiated genotypically and phenotypically from the recognized species of the genus Mucilaginibacter. The isolate therefore represents a novel species, for which the name Mucilaginibacter ginsenosidivorax sp. nov. is proposed, with the type strain KHI28T (=KACC 14955T =LMG 25804T).

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Parthiban Subramanian, Jun Heo, Daseul Lee, Seunghwan Kim, Hyorim Choi, Yunhee Choi, Yiseul Kim
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A literature update elucidating production of Panax ginsenosides with a special focus on strategies enriching the anti-neoplastic minor ginsenosides in ginseng preparations
Tanya Biswas, A. K. Mathur, Archana Mathur
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Mucilaginibacter pocheonensis sp. nov., with ginsenoside-converting activity, isolated from soil of a ginseng-cultivating field
Yan Zhao, Hyung-Gwan Lee, Soo-Ki Kim, Hongshan Yu, Fengxie Jin, Wan-Taek Im
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Mucilaginibacter aquaedulcis sp. nov., isolated from fresh water
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International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_2): 698. CrossRef
Niabella ginsenosidivorans sp. nov., isolated from compost
Kwon-Jung Yi, Wan-Taek Im, Dong-Woon Kim, Qing Mei Liu, Soo-Ki Kim
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Mucilaginibacter auburnensis sp. nov., isolated from a plant stem
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Sphingomonas ginsenosidimutans sp. nov., with Ginsenoside Converting Activity: Tae-Eun Choi , Qing-Mei Liu , Jung-Eun Yang , Siyi Sun , Se-Young Kim , Tae-Hoo Yi , Wan-Taek Im; J. Microbiol. 2010;48(6):760-766. Published online January 9, 2011; DOI: https://doi.org/10.1007/s12275-010-0469-z

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Abstract PDF

The Gram-reaction-negative, strictly aerobic, non-motile, non-spore-forming, and rod-shaped bacterial strain designated Gsoil 1429T was isolated from the soil of ginseng cultivating field of Pocheon province in South Korea. This bacterium was characterized in order to determine its taxonomic position by using the polyphasic approach. Strain Gsoil 1429T grew well at 25-37°C and at pH 7.0 on R2A and nutrient agar without NaCl supplement. Strain Gsoil 1429T had beta-glucosidase activity, which was responsible for its ability to transform ginsenoside Rb1 (one of the dominant active components of ginseng) to F2 via gypenoside XVII. On the basis of 16S rRNA gene sequence similarity, strain Gsoil 1429T was shown to belong to the family Sphingomonadaceae and to be related to Sphingomonas yunnanensis YIM 003T (98.2% sequence similarity), S. phyllosphaerae FA2T (97.5%), S. koreensis JSS26T (97.3%), and S. asaccharolytica IFO 15499T (97.1%). The G+C content of the genomic DNA was 65.6%. The major respiratory quinone was Q-10 and the major fatty acids were summed feature 8 (comprising C18:1 w7c/w9t/w12t), C16:0 and C14:0 2OH. DNA and chemotaxonomic data supported the affiliation of strain Gsoil 1429T to the genus Sphingomonas. The DNA-DNA relatedness values between strain Gsoil 1429T and its closest phylogenetically neighbours were below 28%. Strain Gsoil 1429T could be differentiated genotypically and phenotypically from the recognized species of the genus Sphingomonas. The isolate therefore represents a novel species, for which the name Sphingomonas ginsenosidimutans sp. nov. is proposed, with the type strain Gsoil 1429T (=KACC 14949T =JCM 17074T =LMG 25799T).

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Sphingomonas ginsenosidivorax sp. nov., with the ability to transform ginsenosides
Xue-Feng Jin, Jin-Kwang Kim, Qing-Mei Liu, Myung-Suk Kang, Dan He, Feng-Xie Jin, Sun-Chang Kim, Wan-Taek Im
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Nocardioides ginsengisegetis sp. nov., Isolated from Soil of a Ginseng Field: Wan-Taek Im , Se-Young Kim , Qing-Mei Liu , Jung-Eun Yang , Sung-Taik Lee , Tae-Hoo Yi; J. Microbiol. 2010;48(5):623-628. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0001-5

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Abstract PDF

A Gram-positive, rod-shaped, non-spore-forming bacterium (Gsoil 485T) was isolated from the soil of a ginseng field located in Pocheon province in South Korea. This bacterium was characterized in order to determine its taxonomic position by using the polyphasic approach. On the basis of 16S rRNA gene sequence similarity, strain Gsoil 485T was shown to belong to the family Nocardioidaceae and related to Nocardioides koreensis (96.8% 16S rRNA gene sequence similarity), Nocardioides basaltis (96.7%), Nocardioides salarius (96.7%), and Nocardioides sediminis (96.5%). The sequence similarity with other species that had validly published names within the genus Nocardioides was less than 96.4%. Strain Gsoil 485T was characterized chemotaxonomically as having LL-2,6-diaminopimelic acid in a cell-wall peptidoglycan, MK-8(H4) as the predominant menaquinone, and iso-C16:0, C18:1 ω9c as the major fatty acids. The G+C content of genomic DNA was 71.6 mol%. The chemotaxonomic properties and phenotypic characteristics supported the affiliation of strain Gsoil 485T to the genus Nocardioides. The results of both physiological and biochemical tests allowed for genotypic differentiation of strain Gsoil 485T from the recognized Nocardioides species. Therefore, strain Gsoil 485T is considered to represent the novel species, for which the name Nocardioides ginsengisegetis sp. nov. is proposed, with the type strain Gsoil 485T (KACC 14269T =KCTC 19469T =DSM 21349T).

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Sphingomonas ginsenosidimutans sp. nov., with ginsenoside converting activity
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Panacagrimonas perspica gen. nov., sp. nov., a Novel Member of Gammaproteobacteria Isolated from Soil of a Ginseng Field: Wan-Taek Im , Qing-Mei Liu , Jung-Eun Yang , Min-Seok Kim , Se-Young Kim , Sung-Taik Lee , Tae-Hoo Yi; J. Microbiol. 2010;48(2):262-266. Published online May 1, 2010; DOI: https://doi.org/10.1007/s12275-010-0067-0

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A taxonomic study was carried out on Gsoil 142T, a bacterial strain isolated from the soil collected in a ginseng field in Pocheon province, South Korea. Comparative 16S rRNA gene sequence studies showed a clear affiliation of this bacterium to the Gammaproteobacteria, and it was most closely related to Hydrocarboniphaga effusa ATCC BAA 332T (94.4%, 16S rRNA gene sequence similarity), Nevskia ramosa DSM 11499T (94.1%) and Alkanibacter difficilis MN154.3T (92.0%). Strain Gsoil 142T was a Gram-negative, strictly aerobic, motile, and rod-shaped bacterium. The G+C content of the genomic DNA was 69.9% and predominant ubiquinone was Q-8. Major fatty acids were summed feature 8 (C18:1 w7c and/or w6c, 36.3%), summed feature 3 (iso-C15:0 2-OH and/or C16:1 w7c, 20.6%) and C16:0 (17.4%). The major polar lipids detected in strain Gsoil 142T were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unknown glycolipid. On the basis of polyphasic evidence, it is proposed that strain Gsoil 142T should be placed in a novel genus and species, for which the name Panacagrimonas perspica gen. nov., sp. nov. is proposed. The type strain is Gsoil 142T (=KCTC 12982T =LMG 23239T).

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Comamonas granuli sp. nov., Isolated from Granules Used in a Wastewater Treatment Plant: Kyoung-Ho Kim , Leonid N. Ten , Qing-Mei Liu , Wan-Taek Im , Sung-Taik Lee; J. Microbiol. 2008;46(4):390-395. Published online August 31, 2008; DOI: https://doi.org/10.1007/s12275-008-0019-0

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A Gram-negative, motile, rod-shaped, non-spore-forming bacterial strain, designated as Ko03T, was isolated from microbial granules, and was characterized, using a polyphasic approach, in order to determine its taxonomic position. The isolate was positive for catalase and oxidase, but negative for gelatinase and β-galactosidase. Phylogenetic analyses using the 16S rRNA gene sequence showed that the strain formed a monophyletic branch towards the periphery of the evoluionary radiation occupied by the genus Comamonas, its closest neighbors being Comamonas koreensis KCTC 12005T (95.9% sequence similarity), Comamonas nitrativorans DSM 13191T (95.7%), and Comamonas odontotermitis LMG 23579T (95.7%). Strain Ko03T had a genomic DNA G+C content of 68.4 mol% and the predominant respiratory quinone was Q-8. The major fatty acids were C16:1 ω7c (44.7%), C16:0 (28.1%), C18:1 (16.1%), and C10:0 3-OH (3.5%). These chemotaxonomic results supported the affiliation of strain Ko03T to the genus Comamonas. However, low 16S rRNA gene sequence similarity values and distinguishing phenotypic characteristics allowed genotypic and phenotypic differentiation of strain Ko03T from recognized Comamonas species. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain Ko03T represents a novel species of the genus Comamonas, for which the name Comamonas granuli sp. nov. is proposed. The type strain is Ko03T (= KCTC 12199T= NBRC 101663T).

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