- Hymenobacter jeollabukensis sp. nov., isolated from soil
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Leonid N. Ten , Young Eun Han , Kyeung Il Park , In-Kyu Kang , Jeung-Sul Han , Hee-Young Jung
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J. Microbiol. 2018;56(7):500-506. Published online June 28, 2018
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DOI: https://doi.org/10.1007/s12275-018-8085-4
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A Gram-stain-negative, non-motile, rod-shaped, aerobic bacterial
strain, designated 1-3-3-8T, was isolated from soil and
characterized taxonomically using a polyphasic approach.
Comparative 16S rRNA gene sequence analysis showed that
strain 1-3-3-8T belongs to the family Cytophagaceae of phylum
Bacteroidetes and is most closely related to Hymenobacter
paludis KBP-30T (96.8% similarity), Hymenobacter ocellatus
Myx2105T (96.8%), Hymenobacter coalescens WW84T (95.6%),
and Hymenobacter deserti ZLB-3T (95.4%). The G + C content
of the genomic DNA of strain 1-3-3-8T was 63.6 mol%. The
isolate contained C15:0 iso (28.4%), summed feature 4 (C17:1
anteiso B/C17:1 iso I; 18.9%), and C15:0 anteiso (17.6%) as major
fatty acids, MK-7 as the predominant respiratory quinone,
and sym-homospermidine as the predominant polyamine.
The major polar lipids were phosphatidylethanolamine and
an unidentified lipid. The phenotypic and chemotaxonomic
data supported the affiliation of strain 1-3-3-8T with the genus
Hymenobacter. The DNA-DNA relatedness between strain
1-3-3-8T and H. paludis KCTC 32237T and H. ocellatus DSM
11117T were 24.5 and 27.4% respectively, clearly showing that
the isolate is not related to them at the species level. Overall,
the novel strain could be differentiated from its phylogenetic
neighbors on the basis of several phenotypic, genotypic, and
chemotaxonomic features. Therefore, strain 1-3-3-8T represents
a novel species of the genus Hymenobacter, for which
the name Hymenobacter jeollabukensis sp. nov. has been proposed.
The type strain is 1-3-3-8T (= KCTC 52741T = JCM
32192T).
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Citations
Citations to this article as recorded by  - Isolation and characterization of two new species, Hymenobacter mellowenesis sp. nov. and Hymenobacter aranciens sp. nov., from soil
Seonjae Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
Archives of Microbiology.2024;[Epub] CrossRef -
Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Compositional Data Analysis of 16S rRNA Gene Sequencing Results from Hospital Airborne Microbiome Samples
Maria Rita Perrone, Salvatore Romano, Giuseppe De Maria, Paolo Tundo, Anna Rita Bruno, Luigi Tagliaferro, Michele Maffia, Mattia Fragola
International Journal of Environmental Research and Public Health.2022; 19(16): 10107. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2019; 69(1): 5. CrossRef - Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate
Yingchao Geng, Yumin Zhang, Jin Tian, Jia Liu, Kun Qin, Yao Huang, Ziyan Wei, Fang Peng
Antonie van Leeuwenhoek.2019; 112(10): 1533. CrossRef - Hymenobacter edaphi sp. nov., isolated from abandoned arsenic-contaminated farmland soil
Li Nie, Xia Fan, Dongfang Xiang, Shuijiao Liao, Gejiao Wang
International Journal of Systematic and Evolutionary Microbiology.2019; 69(9): 2921. CrossRef
- Hymenobacter terrigena sp. nov., isolated from soil
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Jeong-Eun Ohn , Leonid N. Ten , Kyeung Il Park , Byung-Oh Kim , Jeung-Sul Han , Hee-Young Jung
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J. Microbiol. 2018;56(4):231-237. Published online April 2, 2018
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DOI: https://doi.org/10.1007/s12275-018-8029-z
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837
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A Gram-stain-negative, non-motile, non-spore-forming, rodshaped,
aerobic bacterial strain, designated S1-2-2-5T, was isolated
from the Jeollabuk-do province, Republic of Korea, and
was characterized taxonomically using a polyphasic approach.
Comparative 16S rRNA gene sequence analysis showed that
strain S1-2-2-5T belonged to the family Cytophagaceae in phylum
Bacteroidetes, and was most closely related to Hymenobacter
terrae DG7AT (98.2%), Hymenobacter rubidus DG7BT
(98.0%), Hymenobacter soli PB17T (97.7%), Hymenobacter
daeguensis 16F3Y-2T (97.2%) and Hymenobacter saemangeumensis
GSR0100T (97.0%). The G + C content of the genomic
DNA of strain S1-2-2-5T was 59.4 mol%. The detection of
menaquinone MK-7 as the predominant respiratory quinone,
a fatty acid profile with summed feature 3 (C16:1 ω7c/C16:1 ω6c;
32.0%), C15:0 iso (19.0%), and C15:0 anteiso (15.0%) as the major
components, and a polar lipid profile with phosphatidylethanolamine
as the major component supported the affiliation
of strain S1-2-2-5T to the genus Hymenobacter. The
DNA-DNA relatedness between strain S1-2-2-5T and H.
terrae KCTC 32554T, H. rubidus KCTC 32553T, H. soli KCTC
12607T, H. daeguensis KCTC 52537T, and H. saemangeumensis
KACC 16452T were 49.5, 48.2, 34.1, 28.1, and 31.8% respectively,
clearly showing that the isolate is not related to them
at the species level. Strain S1-2-2-5T could be clearly differentiated
from its closest neighbors on the basis of its phenotypic,
genotypic and chemotaxonomic features. Therefore,
strain S1-2-2-5T represents a novel species of the genus Hymenobacter,
for which the name Hymenobacter terrigena
sp. nov. is proposed. The type strain is S1-2-2-5T (= KCTC
52737T = JCM 32195T).
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Citations
Citations to this article as recorded by - Isolation and characterization of two new species, Hymenobacter mellowenesis sp. nov. and Hymenobacter aranciens sp. nov., from soil
Seonjae Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
Archives of Microbiology.2024;[Epub] CrossRef -
Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Hymenobacter cyanobacteriorum sp. nov., isolated from a freshwater reservoir during the cyanobacterial bloom period
Ve Van Le, So-Ra Ko, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
Archives of Microbiology.2022;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(9): 2707. CrossRef
- Larkinella roseus sp. nov., a species of the family Cytophagaceae isolated from beach soil
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Jae-Bong Lee , Sumin Hong , Seung-Yeol Lee , Su-Jin Park , Kyeung Il Park , Seok-Gwan Choi , Myung Kyum Kim , Leonid N. Ten , Hee-Young Jung
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J. Microbiol. 2018;56(1):30-35. Published online January 4, 2018
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DOI: https://doi.org/10.1007/s12275-018-7476-x
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1,007
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The taxonomic position of bacterial strain, designated 15J16-
1T3AT, recovered from a soil sample was established using
a polyphasic approach. Phylogenic analysis based on the
16S rRNA gene sequence showed that strain 15J16-1T3AT
belonged to the family Cytophagaceae, phylum Bacteroidetes,
and was most closely related to ‘Larkinella harenae’ 15J9-9
(95.9% similarity), Larkinella ripae 15J11-11T (95.6%), Larkinella
bovis M2TB15T (94.7%), Larkinella arboricola Z0532T
(93.9%), and Larkinella insperata LMG 22510T (93.5%). Cells
were rod-shaped, Gram-stain-negative, aerobic, and nonmotile.
The isolate grew on NA, R2A, TSA, but not on LB
agar. The strain was able to grow at temperature range from
10°C to 30°C with an optimum at 25°C and pH 6–8. Menaquinone
MK-7 was the predominant respiratory quinone.
The major cellular fatty acids comprised C16:1 ω5c (48.6%)
and C15:0 iso (24.1%). Phosphatidylethanolamine, phosphatidylserine,
and an unidentified lipid were the major polar
lipids. The G + C content of the genomic DNA was 49.5
mol%. Strain 15J16-1T3AT could be distinguished from its
closest phylogenetic neighbors based on its phenotypic, genotypic,
and chemotaxonomic features. Therefore, the isolate
is considered to represent a novel species in the genus
Larkinella, for which the name Larkinella roseus sp. nov. is
proposed. The type strain is 15J16-1T3AT (= KCTC 52004T
= JCM 31991T).
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Citations
Citations to this article as recorded by - Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
Yuna Park, Leonid N. Ten, Young Koung Lee, Hee‑Young Jung, Myung Kyum Kim
Archives of Microbiology.2022;[Epub] CrossRef - Larkinella punicea sp. nov., isolated from manganese mine soil
Zijie Zhou, Lin Zhu, Yixuan Dong, Xian Xia, Shijuan Wu, Gejiao Wang
Archives of Microbiology.2020; 202(9): 2517. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1411. CrossRef - Hymenobacter segetis sp. nov., isolated from soil
Leonid N. Ten, Soo Jeong Lim, Byung-Oh Kim, In-Kyu Kang, Hee-Young Jung
Archives of Microbiology.2018; 200(8): 1167. CrossRef
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