Journal of Microbiology

Kiseong Joh

6 Articles

Pedobacter soyangensis sp. nov., Isolated from Lake Soyang in Korea: Yochan Joung , Heeyoung Kang , Haneul Kim , Beom-Il Lee , O-Seob Kwon , Kiseong Joh; J. Microbiol. 2014;52(1):83-87. Published online January 4, 2014; DOI: https://doi.org/10.1007/s12275-014-3284-0

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Strain HME6451T was isolated from Lake Soyang in Korea. Phylogenetic tree based on 16S rRNA gene sequence showed that strain HME6451T formed a lineage within the genus Pedobacter. The strain HME6451T was closely related to Pedobacter daechungensis (95.4% sequence similarity), Pedobacter lentus (94.4%), and Pedobacter glucosidilyticus (93.8%). And strain HME6451T was a Gram-staining-negative, short rodshaped, strictly aerobic bacterium. The major fatty acids were iso-C15:0 (41.2%), summed feature 3 (comprising C16:1 ω7c and/or C16:1 ω6c; 23.1%), and iso-C17:0-3OH (10.1%). The polar lipids of HME6451T were consisted of one phosphatidylethanolamine, one unidentified aminolipid, one unidentified phospholipid and four unidentified polar lipids. The DNA G+C content was 36.0 mol%. On the basis of the evidence presented in this study, strain HME6451T represent a novel species of the genus Pedobacter, for which the name Pedobacter soyangensis sp. nov., is proposed the type strain HME6451T (=KCTC 23467T =CECT 7865T).

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Validation List no. 223. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef
Proposal of Pedobacter nototheniae sp. nov., isolated from the spleen of a black rock cod (Notothenia coriiceps, Richardson 1844) from the Chilean Antarctica
Peter Kämpfer, Rute Irgang, Guillermo Fernández-Negrete, Hans-Jürgen Busse, Matías Poblete-Morales, Derie Fuentes-Messina, Stefanie P. Glaeser, Ruben Avendaño-Herrera
Antonie van Leeuwenhoek.2019; 112(10): 1465. CrossRef
Pedobacter vanadiisoli sp. nov., isolated from soil of a vanadium mine
Zhiyong Wang, Yuanqing Tan, Ding Xu, Gejiao Wang, Jihong Yuan, Shixue Zheng
International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5112. CrossRef
Pedobacter rivuli sp. nov., isolated from a freshwater stream
Heeyoung Kang, Haneul Kim, Yochan Joung, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_12): 4073. CrossRef

Pontibacter jeungdoensis sp. nov., Isolated from a Solar Saltern in Korea: Yochan Joung , Haneul Kim , Beom-Il Lee , Heeyoung Kang , Tae Yong Jang , O-Seob Kwon , Kiseong Joh; J. Microbiol. 2013;51(4):531-535. Published online August 30, 2013; DOI: https://doi.org/10.1007/s12275-013-2324-5

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A Gram-staining-negative, rod-shaped and red-pigmented bacterial strain, HMD3125T, was isolated from a solar saltern in Jeungdo, Republic of Korea. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMD3125T formed a lineage within the genus Pontibacter and was similar to Pontibacter salisaro (96.1%) and P. korlensis (95.3%). The major fatty acids of strain HMD3125T were summed feature 4 (comprising iso-C17:1 I and/or anteiso-C17:1 B; 30.4%), iso-C15:0 (20.4%) and iso-C17:0 3OH (17.2%). The polar lipid profile of HMD3125T consisted of the phosphatidylethanolamine, four unidentified polar lipids, unidentified phospholipid, unidentified aminolipid and unidentified aminophospholipid. Strain HMD3125T contained MK-7 as the predominant menaquinone and sym-homospermidine as the major polyamine. The DNA G+C content of strain HMD3125T was 45.6 mol%. Strain HMD3125T assigned as a novel species in the genus Pontibacter, for which the name Pontibacter jeungdoensis sp. nov. is proposed. The type strain is HMD3125T (=KCTC 23156T =CECT 7710T).

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Microbial community and functional prediction during the processing of salt production in a 1000-year-old marine solar saltern of South China
Ya-Li Wei, Zi-Jie Long, Ming-Xun Ren
Science of The Total Environment.2022; 819: 152014. CrossRef
Pontibacter aquaedesilientis sp. nov., isolated from Jeongbang Waterfall, Jeju Island
Geeta Chhetri, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
High-throughput absolute quantification sequencing reveals the effect of different fertilizer applications on bacterial community in a tomato cultivated coastal saline soil
Si-Qi Jiang, Ya-Nan Yu, Ren-Wei Gao, Huan Wang, Jian Zhang, Rong Li, Xiao-Hua Long, Qi-Rong Shen, Wei Chen, Feng Cai
Science of The Total Environment.2019; 687: 601. CrossRef
Pontibacter chitinilyticus sp. nov., a novel chitin-hydrolysing bacterium isolated from soil
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Myung Kyum Kim, Taegun Seo
Antonie van Leeuwenhoek.2019; 112(7): 1011. CrossRef
Pontibacter locisalis Sy30T sp. nov. isolated from soil collected from an abandoned saltern
Yan-Xia Zhou, Zhi-Hong Xie, Jin-Xin Zhao, Zong-Jun Du, Guan-Jun Chen
Antonie van Leeuwenhoek.2016; 109(3): 415. CrossRef
Pontibacter amylolyticus sp. nov., isolated from a deep-sea sediment hydrothermal vent field
Yue-Hong Wu, Peng Zhou, Shu-Ling Jian, Zhen-Sheng Liu, Chun-Sheng Wang, Aharon Oren, Xue-Wei Xu
International Journal of Systematic and Evolutionary Microbiology.2016; 66(4): 1760. CrossRef
Pontibacter aydingkolensis sp. nov., isolated from soil of a salt lake
Ghenijan Osman, Tao Zhang, Kai Lou, Yan Gao, Wei Chang, Qing Lin, Hong-Mei Yang, Xiang-Dong Huo, Ning Wang
International Journal of Systematic and Evolutionary Microbiology .2016; 66(12): 5523. CrossRef
Pontibacter mucosus sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment
Namita Nayyar, Puneet Kohli, Nitish Kumar Mahato, Rup Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(6): 2234. CrossRef
Pontibacter ummariensis sp. nov., isolated from a hexachlorocyclohexane-contaminated soil
N. K. Mahato, C. Tripathi, N. Nayyar, A. K. Singh, R. Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(2): 1080. CrossRef
Pontibacter chinhatensis sp. nov., isolated from pond sediment containing discarded hexachlorocyclohexane isomer waste
Amit Kumar Singh, Nidhi Garg, Rup Lal
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_7): 2248. CrossRef
Pontibacter humi sp. nov., Isolated from Mountain Soil
Sathiyaraj Srinivasan, Jae-Jin Lee, Sang-Seob Lee, Myung Kyum Kim
Current Microbiology.2014; 69(3): 263. CrossRef
Pontibacter diazotrophicus sp. nov., a Novel Nitrogen-Fixing Bacterium of the Family Cytophagaceae
Linghua Xu, Xian-Chun Zeng, Yao Nie, Xuesong Luo, Enmin Zhou, Lingli Zhou, Yunfan Pan, Wenjun Li, Paul Jaak Janssen
PLoS ONE.2014; 9(3): e92294. CrossRef

Gramella jeungdoensis sp. nov., Isolated from a Solar Saltern in Korea: Yochan Joung , Haneul Kim , Taeyong Jang , Tae-Seok Ahn , Kiseong Joh; J. Microbiol. 2011;49(6):1022-1026. Published online December 28, 2011; DOI: https://doi.org/10.1007/s12275-011-1192-0

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A non-motile, Gram- stain-negative, yellow pigmented, rod-shaped bacterium, strain HMD3159T, was isolated from a solar saltern in Korea. The major fatty acids were iso-C15:0 (26.3%), iso-C17:0 3OH (12.1%), iso-C16:0 (12.0%), summed feature 3 (comprising C16:1 ω7c and/or C16:1 ω6c; 11.0%) and summed feature 9 (iso-C17:1 ω9c and/or 10-methyl C16:0; 10.0%). The major respiratory quinone was MK-6. The DNA G+C content was 40.9 mol%. The phylogenetic tree based on 16S rRNA gene sequences showed that strain HMD3159T formed a lineage within the genus Gramella and closely related to Gramella gaetbulicola (95.5% sequence similarity), Gramella portivictoriae (94.9%), Gramella echinicola (94.6%), and Gramella marina (93.6%). On the basis of the evidence presented in this study, strain HMD3159T represents a novel species of the genus Gramella, for which the name Gramella jeungdoensis sp. nov., is proposed. The type strain is HMD3159T (=KCTC 32123T =CECT 7683T).

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Zhao-Tong Chen, Bing Yu, Yu-Shan Li, Zhi-Wei Zhu, Xi-Ying Zhang, Yi Li
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Yangjie Lin, Kai Zhang, Minghuang Ling, Xiupian Liu, Longjiang Mao, Qiliang Lai, Zhuhua Luo
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef
Gramella oceanisediminis sp. nov., isolated from deep-sea sediment of the Indian Ocean
Lin Yang, Haolei Shi, Qian Li, Minggang Zheng, Qiliang Lai, Li Zheng
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Gramella sediminis sp. nov., isolated from a tidal flat of the Yellow Sea
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Linking bacterial community composition to soil salinity along environmental gradients
Kristin M Rath, Noah Fierer, Daniel V Murphy, Johannes Rousk
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Gramella fulva sp. nov., isolated from a dry surface of tidal flat
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Mariyam Shahina, Asif Hameed, Shih-Yao Lin, Ren-Jye Lee, Maw-Rong Lee, Chiu-Chung Young
Antonie van Leeuwenhoek.2014; 105(4): 771. CrossRef
Gramella oceani sp. nov., a zeaxanthin-producing bacterium of the family Flavobacteriaceae isolated from marine sediment
Asif Hameed, Mariyam Shahina, Shih-Yao Lin, You-Cheng Liu, Wei-An Lai, Chiu-Chung Young
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Pontibacter salisaro sp. nov., Isolated from a Clay Tablet Solar Saltern in Korea: Yochan Joung , Haneul Kim , Tae-Seok Ahn , Kiseong Joh; J. Microbiol. 2011;49(2):290-293. Published online May 3, 2011; DOI: https://doi.org/10.1007/s12275-011-0093-6

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A Gram-negative, aerobic, rod-shaped, and red-pigmented bacterial strain, HMC5104T, was isolated from a solar saltern, found in Jeungdo, Republic of Korea (34°59′47′′N 126°10′02′′E). The major fatty acids were summed feature 4 (comprising iso-C17:1 I and/or anteiso-C17:1 B; 37.2%), iso-C15:0 (20.4%), and iso-C17:0 3OH (15.3%). The DNA G+C content was 46.0 mol%. The major isoprenoid quinone was menaquinone-7 (MK-7). A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMC5104T formed a lineage within the genus Pontibacter, and was closely related to Pontibacter korlensis (95.9%), P. roseus (94.9%), and P. actiniarum (94.3%). Similarities to all other Pontibacter species were between 95.9-93.9%. On the basis of the evidence presented in this study, strain HMC5104T represents a novel species of the genus Pontibacter, for which the name Pontibacter salisaro sp. nov. is proposed. The type strain is HMC5104T (=KCTC 22712T =NBRC 105731T).

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Physicochemical transformation of polystyrene mediated by Pontibacter strains isolated from discarded expanded polystyrene buoys in a coastal marine environment
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Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
Yali Wei, Fang Wang, Jiangli Gao, Yaolong Huang, Wei Ren, Hongmei Sheng
BMC Microbiology.2021;[Epub] CrossRef
Pontibacter chitinilyticus sp. nov., a novel chitin-hydrolysing bacterium isolated from soil
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Myung Kyum Kim, Taegun Seo
Antonie van Leeuwenhoek.2019; 112(7): 1011. CrossRef
Pontibacter beigongshangensis sp. nov., Isolated from the Mash of Wine
Jialiang Xu, Leping Sun, Zhanbin Sun, Xuan Xing, Jia Li, Xin Lu, Ying Huang, Qing Ren
Current Microbiology.2019; 76(12): 1525. CrossRef
Vegetation succession influences soil carbon sequestration in coastal alkali-saline soils in southeast China
Niu Li, Tianyun Shao, Tingshuo Zhu, Xiaohua Long, Xiumei Gao, Zhaopu Liu, Hongbo Shao, Zed Rengel
Scientific Reports.2018;[Epub] CrossRef
Edaphorhabdus rosea gen. nov., sp. nov., a new member of the family Cytophagaceae isolated from soil in South Korea
Geeta Chhetri, Dahye Yang, Jiwon Choi, Hyungdong Kim, Taegun Seo
Antonie van Leeuwenhoek.2018; 111(12): 2385. CrossRef
Pontibacter locisalis Sy30T sp. nov. isolated from soil collected from an abandoned saltern
Yan-Xia Zhou, Zhi-Hong Xie, Jin-Xin Zhao, Zong-Jun Du, Guan-Jun Chen
Antonie van Leeuwenhoek.2016; 109(3): 415. CrossRef
Pontibacter amylolyticus sp. nov., isolated from a deep-sea sediment hydrothermal vent field
Yue-Hong Wu, Peng Zhou, Shu-Ling Jian, Zhen-Sheng Liu, Chun-Sheng Wang, Aharon Oren, Xue-Wei Xu
International Journal of Systematic and Evolutionary Microbiology.2016; 66(4): 1760. CrossRef
Pontibacter virosus sp. nov., isolated from a hexachlorocyclohexane-contaminated dumpsite
Puneet Kohli, Namita Nayyar, Anukriti Sharma, Amit Kumar Singh, Rup Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(11): 4395. CrossRef
Pontibacter mucosus sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment
Namita Nayyar, Puneet Kohli, Nitish Kumar Mahato, Rup Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(6): 2234. CrossRef
Pontibacter aydingkolensis sp. nov., isolated from soil of a salt lake
Ghenijan Osman, Tao Zhang, Kai Lou, Yan Gao, Wei Chang, Qing Lin, Hong-Mei Yang, Xiang-Dong Huo, Ning Wang
International Journal of Systematic and Evolutionary Microbiology .2016; 66(12): 5523. CrossRef
Pontibacter ummariensis sp. nov., isolated from a hexachlorocyclohexane-contaminated soil
N. K. Mahato, C. Tripathi, N. Nayyar, A. K. Singh, R. Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(2): 1080. CrossRef
Pontibacter chinhatensis sp. nov., isolated from pond sediment containing discarded hexachlorocyclohexane isomer waste
Amit Kumar Singh, Nidhi Garg, Rup Lal
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_7): 2248. CrossRef
Pontibacter humi sp. nov., Isolated from Mountain Soil
Sathiyaraj Srinivasan, Jae-Jin Lee, Sang-Seob Lee, Myung Kyum Kim
Current Microbiology.2014; 69(3): 263. CrossRef
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Linghua Xu, Xian-Chun Zeng, Yao Nie, Xuesong Luo, Enmin Zhou, Lingli Zhou, Yunfan Pan, Wenjun Li, Paul Jaak Janssen
PLoS ONE.2014; 9(3): e92294. CrossRef
Pontibacter indicus sp. nov., isolated from hexachlorocyclohexane-contaminated soil
Amit Kumar Singh, Nidhi Garg, Pushp Lata, Roshan Kumar, Vivek Negi, Surendra Vikram, Rup Lal
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_1): 254. CrossRef
Pontibacter ruber sp. nov. and Pontibacter deserti sp. nov., isolated from the desert
Y. Subhash, Ch. Sasikala, Ch. V. Ramana
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_3): 1006. CrossRef
Pontibacter jeungdoensis sp. nov., isolated from a solar saltern in Korea
Yochan Joung, Haneul Kim, Beom-Il Lee, Heeyoung Kang, Tae Yong Jang, O-Seob Kwon, Kiseong Joh
Journal of Microbiology.2013; 51(4): 531. CrossRef
Pontibacter toksunensis sp. nov., isolated from soil, and emended descriptions of Pontibacter roseus and Pontibacter akesuensis
Lei Zhang, Lingfang Zhu, Linfang Wei, Changfu Li, Yao Wang, Xihui Shen
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Pontibacter lucknowensis sp. nov., isolated from a hexachlorocyclohexane dump site
Vatsala Dwivedi, Neha Niharika, Rup Lal
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_1): 309. CrossRef
Pontibacter saemangeumensis sp. nov., isolated from seawater
Ji Young Kang, Yochan Joung, Jeesun Chun, Haneul Kim, Kiseong Joh, Kwang Yeop Jahng
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_2): 565. CrossRef
Pontibacter ramchanderi sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment
Amit Kumar Singh, Nidhi Garg, Naseer Sangwan, Vivek Negi, Roshan Kumar, Surendra Vikram, Rup Lal
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_8): 2829. CrossRef
Draft Genome Sequence of Pontibacter sp. nov. BAB1700, a Halotolerant, Industrially Important Bacterium
M. N. Joshi, A. C. Sharma, R. V. Pandya, R. P. Patel, Z. M. Saiyed, A. K. Saxena, S. B. Bagatharia
Journal of Bacteriology.2012; 194(22): 6329. CrossRef

Pedobacter yonginense sp. nov., Isolated from a Mesotrophic Artificial Lake in Korea: Yochan Joung , Hanuel Kim , Kiseong Joh; J. Microbiol. 2010;48(4):536-540. Published online August 20, 2010; DOI: https://doi.org/10.1007/s12275-010-0010-4

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A non-motile red-pigmented bacterium, designated strain HMD1002T, was isolated from an artificial lake located on the campus of Hankuk University of Foreign Studies, South Korea. The major fatty acids were iso-C15:0 (29.6%), Summed Feature 3 (comprising C16:1 ω7c and/or iso-C15:0 2-OH; 17.5%) and iso-C17:0 3-OH (12.5%). The major isoprenoid quinone was menaquinone-7 (MK-7). The DNA G+C content was 41.0 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMD1002T formed a lineage in the genus Pedobacer and was closely related to Pedobacer terrae (96.3%) and Pedobacer suwonensis (95.8%) in sequence similarity. On the basis of the evidence presented in this study, strain HMD1002T represents a novel species of the genus Pedobacter, for which the name Pedobacter yonginense sp.nov. is proposed. The type strain is HMD1002T (=KCTC 22721T =CECT 7544T).

Citations

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Validation list no. 228: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef
Culturable microorganisms of substrates of terrestrial plant communities of the maritime Antarctic (Galindez Island, Booth Island)
Solomiia Komplikevych, Olha Maslovska, Taras Peretyatko, Oksana Moroz, Svitlana Diakiv, Yeva Zaritska, Ivan Parnikoza, Svitlana Hnatush
Polar Biology.2023; 46(1): 1. CrossRef
Nine novel psychrotolerant species of the genus Pedobacter isolated from Arctic soil with potential antioxidant activities
Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2537. CrossRef
Proposal of Pedobacter nototheniae sp. nov., isolated from the spleen of a black rock cod (Notothenia coriiceps, Richardson 1844) from the Chilean Antarctica
Peter Kämpfer, Rute Irgang, Guillermo Fernández-Negrete, Hans-Jürgen Busse, Matías Poblete-Morales, Derie Fuentes-Messina, Stefanie P. Glaeser, Ruben Avendaño-Herrera
Antonie van Leeuwenhoek.2019; 112(10): 1465. CrossRef
Pedobacter paludis sp. nov., isolated from wetland soil
Yuxiao Zhang, Jingxin Li, Jinling Wang, Gejiao Wang
Archives of Microbiology.2019; 201(3): 349. CrossRef
Characterization of shed medicinal leech mucus reveals a diverse microbiota
Brittany M. Ott, Allen Rickards, Lauren Gehrke, Rita V. M. Rio
Frontiers in Microbiology.2015;[Epub] CrossRef
Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T)
Konstantinos Liolios, Johannes Sikorski, Meagan Lu, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Natalia Ivanova, Ioanna Pagani, Konstantinos
Standards in Genomic Sciences.2011; 5(1): 30. CrossRef

Rapid Detection of Virulence Factors of Aeromonas Isolated from a Trout Farm by Hexaplex-PCR: In-Young Nam , Kiseong Joh; J. Microbiol. 2007;45(4):297-304.; DOI: https://doi.org/2569 [pii]

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Abstract PDF: The detection of virulence factors of Aeromonas is a key component in determining potential pathogenicity because these factors act multifunctionally and multifactorially. In this study water samples were collected from a trout farm on a seasonal basis, and diseased fish and Aeromonas species were isolated and identified. For rapid detection of six virulence factors of isolated Aeromonas, a hexaplex-polymerase chain reaction (hexaplex-PCR) assay was used. The detected virulence factors include aerolysin (aer), GCAT (gcat), serine protease (ser), nuclease (nuc) lipase (lip) and lateral flagella (laf). The dominant strain found in our isolates was Aeromonas sobria, and the dominant virulence factors were aer and nuc for all seasons. We confirmed that A. sobria and two of the virulence genes (aer and nuc) are related. We proposed a method by which one can identify the major strains of Aeromonas: A. hydrophila, A. sobria, A. caviae, and A. veronii, using hexaplex-PCR.

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