- Diaminobutyricibacter tongyongensis gen. nov., sp. nov. and Homoserinibacter gongjuensis gen. nov., sp. nov. Belong to the Family Microbacteriaceae
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Soo-Jin Kim , Jae-Hyung Ahn , Hang-Yeon Weon , Moriyuki Hamada , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2014;52(6):527-533. Published online February 17, 2014
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DOI: https://doi.org/10.1007/s12275-014-3278-y
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Two bacterial strains, KIS66-7T and 5GH26-15T, were isolated from soil samples collected in the South Korean cities of Tongyong and Gongju, respectively. Both strains were aerobic, Gram-stain-positive, mesophilic, flagellated, and rodshaped. A phylogenetic analysis revealed that both strains belonged to the family Microbacteriaceae of the phylum Actinobacteria. The 16S rRNA gene sequence of strain KIS66-7T had the highest similarities with those of Labedella gwakjiensis KSW2-17T (97.3%), Cryobacterium psychrophilum DSM 4854T (97.2%), Leifsonia lichenia 2SbT (97.2%), Leifsonia naganoensis JCM 10592T (97.0%), and Cryobacterium mesophilum MSL-15T (97.0%). Strain 5GH26-15T showed the highest sequence similarities with Leifsonia psychrotolerans LI1T (97.4%) and Schumannella luteola KHIAT (97.1%). The 16S rRNA gene sequence from KIS66-7T exhibited 96.4% similarity with that from 5GH26-15T. Strain KIS66-7T contained a B2γ type peptidoglycan structure with D-DAB as the diamino acid; MK-13, MK-12, and MK-14 as the respiratory quinones; ai-C15:0, ai-C17:0, and i-C16:0 as the major cellular fatty acids; and diphosphatidylglycerol, phatidylglycerol, and glycolipids as the predominant polar lipids. Strain 5GH26-15T had a B2β type peptidoglycan structure with D-DAB as the diamino acid; MK-14 and MK-13 as the respiratory quinones; ai-C15:0, i-C16:0, and ai-C17:0 as the major cellular fatty acids; and diphosphatidylglycerol, phatidylglycerol, and glycolipids as the predominant polar lipids. Both strains had low DNA-DNA hybridization values (<40%) with closely related taxa. Based on our polyphasic taxonomic characterization, we propose that strains KIS66-7T and 5GH26-15T represent novel genera and species, for which we propose the names Diaminobutyricibacter tongyongensis gen. nov., sp. nov. (type strain KIS66-7T =KACC 15515T =NBRC 108724T) and Homoserinibacter gongjuensis gen. nov., sp. nov. (type strain 5GH26-15T =KACC 15524T =NBRC 108755T) within the family Microbacteriaceae.
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Jun Heo, Hayoung Cho, Mi Ae Kim, Moriyuki Hamada, Tomohiko Tamura, Satomi Saitou, Soo-Jin Kim, Soon-Wo Kwon
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- Lysinibacillus chungkukjangi sp. nov., Isolated from Chungkukjang, Korean Fermented Soybean Food
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Kyung-Sook Whang , Soon-Wo Kwon
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J. Microbiol. 2013;51(3):400-404. Published online June 28, 2013
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DOI: https://doi.org/10.1007/s12275-013-2664-1
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One bacterial strain 2RL3-2T was isolated from Chungkukjang, a traditional Korean fermented food made from soybeans, and determined to be a Gram-positive, aerobic, sporeforming rod. Growth of the novel strain was optimal at 30°C and pH 7.0. The 16S rRNA gene of strain 2RL3-2T showed the highest level of sequence similarity to Lysinibacillus sinduriensis BLB-1T (99.0%), Lysinibacillus massiliensis 4400831T (97.1%), Lysinibacillus xylanilyticus XDB9T (97.0%), and Lysinibacillus odysseyi 34hs-1T (96.8%). Phylogenetic analysis showed that strain 2RL3-2T formed a robust cluster with L. sinduriensis BLB-1T, L. massiliensis 4400831T, and L. odyssey 34hs-1T. The major fatty acids were anteiso-C15:0 (47.3%), iso-C16:0 (16.3%), and anteiso-C17:0 (11.3%), and the only menaquinone was MK-7. Diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine were the major polar lipids, along with an unknown phospholipid and two unknown lipids. The peptidoglycan type was A4α, with an interpeptide bridge of l-Lys–d-Asp. DNA-DNA hybridization values between strain 2RL3-2T and closely related Lysinibacillus species were below 43±4%. Therefore, based on phenotypic, chemotaxonomic, and phylogenetic characteristics, it was determined that strain 2RL3-2T represents a novel species of the genus Lysinibacillus, for which the name Lysinibacillus chungkukjangi sp. nov. is proposed. The type strain is 2RL3-2T (=KACC 16626T =NBRC 108948T).
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- Homoserinimonas aerilata gen. nov., sp. nov., a Novel Member of the Family Microbacteriaceae Isolated from an Air Sample in Korea
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(6):1086-1086.
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In the article by Soon-Jin Kim et al. that appears in the Journal of Microbiology 2012; 50, 673-679, the menaquinone composition
of strain 5317J-19T was presented as MK-12 (50%) and MK-11 (31%) as major ones, and MK-13 (11%), MK-10 (7%), and
MK-9 (1%). The correct composition of menaquinones are MK-13 (50%) and MK-12 (31%) as major ones, and MK-14 (11%),
MK-11 (7%), and MK-10 (1%).
- Diaminobutyricimonas aerilata gen. nov., sp. nov., a Novel Member of the Family Microbacteriaceae Isolated from an Air Sample in Korea
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Yun-Hee Jang , Soo-Jin Kim , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(6):1047-1052. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2118-1
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A novel isolate, designated 6408J-67T, was isolated from an air sample collected from Jeju Island, Republic of Korea. Its phenotypic, genotypic, and chemotaxonomic properties were compared with those of members of the family Microbacteriaceae.
The Gram-positive, aerobic, motile rod formed light yellow, smooth, circular and convex colonies. Optimal growth occurred at 30°C and pH 7.0. 16S rRNA gene sequence data showed that the isolate was a novel member of the family Microbacteriaceae, with the highest sequence similarity (97.4%) to Labedella gwakjiensis KSW2-17T and less (<97%) sequence similarity with other taxa. The major cellular fatty acids (>10% of the total) were anteiso-C15:0, iso-C14:0, and iso-C16:0. The strain also contained MK-13, MK-12, and MK-14 as the major menaquinones, as well as diphosphatidylglycerol, phosphatidylglycerol, and two unknown glycolipids. Its peptidoglycan structure was B1β with 2,4-diaminobutyric acid as a diamino acid. Mycolic acids were absent. The DNA G+C content was 68.3 mol%. Based on these phenotypic and genotypic findings, strain 6408J-67T represents a novel species of a new genus within the family Microbacteriaceae, for which the name Diaminobutyricimonas aerilata gen. nov., sp. nov. is proposed. The type strain is 6408J-67T (=KACC 15518T =NBRC 108726T).
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Soo-Jin Kim, Jae-Hyung Ahn, Hang-Yeon Weon, Moriyuki Hamada, Ken-ichiro Suzuki, Soon-Wo Kwon
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International Journal of Systematic and Evolutionary Microbiology
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- Homoserinimonas aerilata gen. nov., sp. nov., a Novel Member of the Family Microbacteriaceae Isolated from an Air Sample in Korea
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(4):673-679. Published online July 21, 2012
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DOI: https://doi.org/10.1007/s12275-012-2096-3
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A bacterial strain isolated from an air sample, strain 5317J-19T, was characterized. The isolate was an aerobic, motile, Gram-positive rod. The organism was able to grow between 4 and 35°C and between pH 6 and 9. The predominant fatty acids were anteiso-C15:0 and iso-C16:0. The major respiratory menaquinones were MK-12 and MK-11, and the minor ones were MK13, MK-10, and MK-9. Genomic DNA G+C content was 66 mol%. The diagnostic diamino acid of the peptidoglycan is presumably D-Orn. The peptidoglycan is supposed to be B2β type. The 16S rRNA gene sequence analysis indicated that this isolate belongs to the family Microbacteriaceae and had the highest sequence similarities with Salinibacterium xinjiangense 0543T (97.6%), Salinibacterium amurskyense KMM 3673T (97.2%), and Leifsonia bigeumensis MSL-27T (97.2%). Phylogenetic analysis and phenotypic characteristics support the proposal of a new genus and a novel species, with the name Homoserinimonas aerilata gen. nov., sp. nov. The type strain of Homoserinimonas aerilata is 5317J-19T (=KACC 15522T =NBRC 108729T).
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International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4683. CrossRef -
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.2019; 69(4): 1093. CrossRef - Huakuichenia soli gen. nov., sp. nov., a new member of the family Microbacteriaceae, isolated from contaminated soil
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Soo-Jin Kim, Jae-Hyung Ahn, Hang-Yeon Weon, Moriyuki Hamada, Ken-ichiro Suzuki, Soon-Wo Kwon
Journal of Microbiology.2014; 52(6): 527. CrossRef -
Rudaibacter terrae gen. nov., sp. nov., isolated from greenhouse soil
Soo-Jin Kim, Ji-Young Moon, Moriyuki Hamada, Tomohiko Tamura, Hang-Yeon Weon, Ken-ichiro Suzuki, Soon-Wo Kwon
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.2013; 63(Pt_11): 4052. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology
.2012; 62(Pt_11): 2549. CrossRef
- Leucobacter denitrificans sp. nov., Isolated from Cow Dung
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Hang-Yeon Weon , Rangasamy Anandham , Tomohiko Tamura , Moriyuki Hamada , Soo-Jin Kim , Yi-Seul Kim , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(1):161-165. Published online February 27, 2012
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DOI: https://doi.org/10.1007/s12275-012-1324-1
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The bacterial strain M1T8B10T was isolated from cow dung
in Suwon, Republic of Korea. The strain was a Gram stainpositive
rod, nonmotile, and non-spore-forming. According
to 16S rRNA gene sequence analysis, the strain fell within
the clade of the genus Leucobacter, showing the highest sequence
similarities with Leucobacter aridicollis L-9T (98.7%),
Leucobacter iarius 40T (98.4%), and Leucobacter komagatae
JCM 9414T (98.2%). Cell-wall peptidoglycan contained the
diagnostic diamino acid 2,4-diaminobutyric acid of the genus
Leucobacter, showing B-type cross-linked peptidoglycans.
The major fatty acids were anteiso-C15:0, iso-C16:0, and anteiso-
C17:0. The quinone system consisted of the menaquinones
MK-11 (78%) and MK-10 (22%). The polar lipid profiles
contained diphosphatidylglycerol, phosphatidylglycerol, and
an unidentified glycolipid. Differences in several physiological
features including nitrate reduction enabled the isolate
to be differentiated from all recognized Leucobacter
species. Based on these phylogenetic, chemotaxonomic, and
phenotypic results, the isolate represents a novel species,
for which the name Leucobacter denitrificans sp. nov. is
proposed. The type strain is M1T8B10T (=KACC 14055T
=NBRC 106309T).
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- Microbacterium suwonense sp. nov., Isolated from Cow Dung
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DOI: https://doi.org/10.1007/s12275-011-1036-y
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Abstract
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An actinomycete strain, designated M1T8B9T, was isolated from cow dung in Suwon, Republic of Korea. The isolate was a Gram-positive, nonmotile, and non-spore-forming bacterium. Phylogenetic evaluation based on 16S rRNA gene sequence similarity showed that this isolate belongs to the genus Microbacterium, with its closest neighbors being Microbacterium soli DCY17T (98.2%) and Microbacterium esteraromaticum DSM 8609T (98.0%). The polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, and one unknown glycolipid. Strain M1T8B9T contained the major fatty acids C15:0 anteiso, C16:0 iso, C17:0 anteiso, and C15:0 iso, and the cell-wall peptidoglycan was of type B2β. According to DNA-DNA hybridization studies, strain M1T8B9T showed 42% and 26% relatedness with M. soli DCY17T and M. esteraromaticum DSM 8609T, respectively. On the basis of the data presented, strain M1T8B9T is considered to represent a novel species of the genus Microbacterium, for which the name Microbacterium suwonense sp. nov. is proposed. The type strain is M1T8B9T (=KACC 14058T =NBRC 106310T).
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