- Phycicoccus ochangensis sp. nov., Isolated from Soil of a Potato Cultivation Field
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Hyangmi Kim , Hyun-Woo Oh , Doo-Sang Park , Kang Hyun Lee , Sung Uk Kim , Hee-Moon Park , Kyung Sook Bae Bae
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J. Microbiol. 2012;50(5):893-893.
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In the article by Kim et al. that appears in the Journal of Microbiology 2012; 50, 349-353. KCTC number on page 349 (abstract line 19) and page 353 (left paragraph line 32) should read as KCTC 19695 not KCTC 19694, and on page 353 (left paragraph
line 33) should read as KCTC 19694 not KCTC 19695.
- Phycicoccus ochangensis sp. nov., Isolated from Soil of a Potato Cultivation Field
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Hyangmi Kim , Hyun-Woo Oh , Doo-Sang Park , Kang Hyun Lee , Sung Uk Kim , Hee-Moon Park , Kyung Sook Bae
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J. Microbiol. 2012;50(2):349-353. Published online April 27, 2012
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DOI: https://doi.org/10.1007/s12275-012-1206-6
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Two novel, Gram-positive, motile, coccal bacteria, strains L1b-b9T and B5a-b5, were isolated from a potato cultivation field in Ochang, Korea. These isolates grew at 10–45°C, pH 5.0–10.0, and in the presence of 8% (w/v) NaCl. The diagnostic diamino acid in the cell-wall peptidoglycan was mesodiaminopimelic acid. The major menaquinone was MK-8(H4) and the main cellular fatty acids were iso-C14:0, iso-C15:0, and anteiso-C15:0. Polar lipids in strain L1b-b9T consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, and an unknown glyco-amino lipid. The G+C content of genomic DNA was 73.6 mol%. A phylogenetic analysis based on 16S rRNA gene sequences showed that strains L1b-b9T and B5a-b5 shared 99.36% similarity and formed a robust clade with the type species of the genus Phycicoccus. Strain L1b-b9T is related most closely to Phycicoccus cremeus V2M29T (97.52% 16S rRNA gene sequence similarity). On the basis of phylogenetic characteristics, the name Phycicoccus ochangensis sp. nov. is proposed for strain LIb-b9T (=KCTC 19694T =JCM 17595T).
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Citations
Citations to this article as recorded by 
- Validation list no. 228: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Phycicoccus sonneraticus sp. nov., a Novel Endophytic Actinobacterium Isolated from the Bark of Sonneratia apetala
Huiling Tang, Xiaohui Chen, Mingsheng Chen, Xiaohong Li, Jianjing Jiang, Li Tuo, Feina Li Current Microbiology.2023;[Epub] CrossRef - An Insight into the Endophytic Bacterial Community of Tomato after Spray Application of Propiconazole and Bacillus subtilis Strain NBRI-W9
Udit Yadav, Nasreen Bano, Sumit Bag, Suchi Srivastava, Poonam C. Singh, Jeffrey A. Gralnick Microbiology Spectrum.2022;[Epub] CrossRef - Phycicoccus ginsengisoli sp. nov., isolated from cultivated ginseng soil
Jong-Pyo Kang, Yeon-Ju Kim, Ngoc-Lan Nguyen, Van-An Hoang, Mohamed El-Agamy Farh, Sung-Chul Joo, Lin-Hu Quan, Deok-Chun Yang International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5320. CrossRef -
Phycicoccus soli sp. nov., isolated from soil
Hina Singh, KyungHwa Won, Hien T. T. Ngo, Juan Du, MooChang Kook, Tae-Hoo Yi
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_8): 2351. CrossRef
- Paenibacillus pini sp. nov., a Cellulolytic Bacterium Isolated from the Rhizosphere of Pine Tree
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Byung-Chun Kim , Kang Hyun Lee , Mi Na Kim , Eun-Mi Kim , Sung Ran Min , Hyun Soon Kim , Kee-Sun Shin
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J. Microbiol. 2009;47(6):699-704. Published online February 4, 2010
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DOI: https://doi.org/10.1007/s12275-009-0343-z
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Strain S22T, a novel cellulolytic bacterium was isolated from the rhizosphere of pine trees. This isolate was Gram-reaction positive, motile and rods, and formed terminal or subterminal ellipsoidal spores. S22T represented positive activity for catalase, oxidase, esterase (C4), esterase lipase (C8), β-galactosidase, leucine arylamidase, and hydrolysis of esculin. It contained meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall. The predominant isoprenoid quinone was menaquinone 7 (MK-7), and the major cellular fatty acids were anteiso-C15:0 (52.9%), iso-C16:0 (11.3%), and iso-C15:0 (10.0%). The DNA G+C content was 43.3 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that this isolate belonged to the family Paenibacillaceae. S22T exhibited less than 97.0% 16S rRNA gene similarity with all relative type strains in the genus Paenibacillus, and the most closely related strains were Paenibacillus anaericanus MH21T and Paenibacillus ginsengisoli Gsoil 1638T, with equal similarities of 95.8%. This polyphasic evidence suggested that strain S22T should be considered a novel species in the genus Paenibacillus, for which the name, Paenibacillus pini sp. nov., is proposed. The type strain is S22T (=KCTC 13694T =KACC 14198T =JCM 16418T)
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Paenibacillus auburnensis sp. nov. and Paenibacillus pseudetheri sp. nov., isolated from the rhizosphere of Zea mays
Peter Kämpfer, André Lipski, John A. McInroy, Dominique Clermont, Lucie Lamothe, Stefanie P. Glaeser, Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Bacillus rhizoplanae sp. nov. from maize roots
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International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Cellulolytic Properties of a Potentially Lignocellulose-Degrading Bacillus sp. 8E1A Strain Isolated from Bulk Soil
Jakub Dobrzyński, Barbara Wróbel, Ewa Beata Górska Agronomy.2022; 12(3): 665. CrossRef - Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root
Peter Kämpfer, André Lipski, Lucie Lamothe, Dominique Clermont, Alexis Criscuolo, John A. McInroy, Stefanie P. Glaeser Archives of Microbiology.2022;[Epub] CrossRef - Microbiomes of commercially-available pine nuts and sesame seeds
Megan Fay, Joelle K. Salazar, Padmini Ramachandran, Diana Stewart, Massimiliano Cardinale PLOS ONE.2021; 16(6): e0252605. CrossRef -
Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays
Peter Kämpfer, Hans-Jürgen Busse, John A. McInroy, Dominique Clermont, Alexis Criscuolo, Stefanie P. Glaeser
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Paenibacillus nebraskensis sp. nov., isolated from the root surface of field-grown maize
Peter Kämpfer, Hans-Jürgen Busse, John A. McInroy, Chia-Hui Hu, Joseph W. Kloepper, Stefanie P. Glaeser
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(12): 4956. CrossRef - Paenibacillus rhizoplanae sp. nov., isolated from the rhizosphere of Zea mays
Peter Kämpfer, Hans-Jürgen Busse, John A. McInroy, Chia-Hui Hu, Joseph W. Kloepper, Stefanie P. Glaeser International Journal of Systematic and Evolutionary Microbiology.2017; 67(4): 1058. CrossRef - A novel type bacterial flagellar motor that can use divalent cations as a coupling ion
Riku Imazawa, Yuka Takahashi, Wataru Aoki, Motohiko Sano, Masahiro Ito Scientific Reports.2016;[Epub] CrossRef -
Paenibacillus lemnae sp. nov., an endophytic bacterium of duckweed (Lemna aequinoctialis)
Chokchai Kittiwongwattana, Chitti Thawai
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_1): 107. CrossRef -
Paenibacillus selenii sp. nov., isolated from selenium mineral soil
Wanwan Xiang, Gejiao Wang, Yuantao Wang, Rong Yao, Fujun Zhang, Rui Wang, Dan Wang, Shixue Zheng
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_8): 2662. CrossRef -
Draft Genome Sequence of Paenibacillus pini JCM 16418
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, Isolated from the Rhizosphere of Pine Tree
Masahiro Yuki, Kenshiro Oshima, Wataru Suda, Yumi Oshida, Keiko Kitamura, Toshiya Iida, Masahira Hattori, Moriya Ohkuma Genome Announcements.2014;[Epub] CrossRef -
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shirakamiensis sp. nov., isolated from the trunk surface of a Japanese oak (Quercus crispula)
Akio Tonouchi, Daisuke Tazawa, Takashi Fujita
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_5): 1763. CrossRef - Partial Characterization of α-Galactosidic Activity from the Antarctic Bacterial Isolate, Paenibacillus sp. LX-20 as a Potential Feed Enzyme Source
Inkyung Park, Jaekoo Lee, Jaiesoon Cho Asian-Australasian Journal of Animal Sciences.2012; 25(6): 852. CrossRef - Identification and Characterization of Psychrotolerant Sporeformers Associated with Fluid Milk Production and Processing
Reid A. Ivy, Matthew L. Ranieri, Nicole H. Martin, Henk C. den Bakker, Bruno M. Xavier, Martin Wiedmann, Kathryn J. Boor Applied and Environmental Microbiology.2012; 78(6): 1853. CrossRef - Applications of systems biology towards microbial fuel production
Christopher M. Gowen, Stephen S. Fong Trends in Microbiology.2011; 19(10): 516. CrossRef - Sphingomonas rosea sp. nov. and Sphingomonas swuensis sp. nov., rosy colored β-glucosidase-producing bacteria isolated from soil
Sathiyaraj Srinivasan, Jae-Jin Lee, Myung Kyum Kim The Journal of Microbiology.2011; 49(4): 610. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology.2011; 61(1): 1. CrossRef - Sphingomonas humi sp. nov., isolated from soil
Tae Hoo Yi, Chang-Kyun Han, Sathiyaraj Srinivasan, Kang Jin Lee, Myung Kyum Kim The Journal of Microbiology.2010; 48(2): 165. CrossRef
- Paenibacillus pinihumi sp. nov., a Cellulolytic Bacterium Isolated from the Rhizosphere of Pinus densiflora
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Byung-Chun Kim , Kang Hyun Lee , Mi Na Kim , Eun-Mi Kim , Moon-Soo Rhee , O-Yu Kwon , Kee-Sun Shin
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J. Microbiol. 2009;47(5):530-535. Published online October 24, 2009
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DOI: https://doi.org/10.1007/s12275-009-0270-z
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759
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A novel cellulolytic bacterium, strain S23T, was isolated from the rhizosphere of the pine trees in Daejeon, Republic of Korea. This isolate was Gram-positive, strictly aerobic, rod-shaped, catalase-negative, oxidase- positive, motile by means of peritrichous flagella, and tested positive for alkaline phosphatase, esterase lipase,
leucine arylamidase, α-galactosidase, and β-galactosidase activities. The DNA G+C content was 49.5mol%. The main cellular fatty acids were anteiso-C15:0 (51.9%), iso-C16:0 (14.7%), and iso-C15:0 (13.2%). The major isoprenoid quinone was menaquinone 7 (MK-7). Diagnostic diamino acid in the cell-wall peptidoglycan
was meso-diaminopimelic acid. Comparative 16S rRNA gene sequence analysis showed that this strain clustered with Paenibacillus species. The 16S rRNA gene sequence similarity values between S23T and other Paenibacillus species were between 89.9% and 95.9%, and S23T was most closely related to Paenibacillus tarimensis SA-7-6T. On the basis of phylogenetic and phenotypic properties of strain S23T, the isolate is considered as a novel species belonging to the genus Paenibacillus. Therefore, the name, Paenibacillus pinihumi sp. nov., is proposed for the rhizosphere isolate; the type strain is S23T (=KCTC 13695T =KACC 14199T =JCM 16419T)
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Citations
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Peter Kämpfer, André Lipski, Lucie Lamothe, Dominique Clermont, Alexis Criscuolo, John A. McInroy, Stefanie P. Glaeser Antonie van Leeuwenhoek.2023; 116(9): 883. CrossRef -
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Peter Kämpfer, André Lipski, John A. McInroy, Dominique Clermont, Lucie Lamothe, Stefanie P. Glaeser, Alexis Criscuolo
International Journal of Systematic and Evolutionary Microbiology
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Bacillus rhizoplanae sp. nov. from maize roots
Peter Kämpfer, André Lipski, John A. McInroy, Dominique Clermont, Alexis Criscuolo, Stefanie P. Glaeser
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root
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Paenibacillus allorhizosphaerae sp. nov., from soil of the rhizosphere of Zea mays
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Shahina Akter, Xiaoqing Wang, Sun-Young Lee, M. Mizanur Rahman, Jong-Hyun Park, Muhammad Zubair Siddiqi, Sri Renukadevi Balusamy, Kihong Nam, Md. Shahedur Rahman, Md. Amdadul Huq Archives of Microbiology.2021; 203(7): 3997. CrossRef - Paenibacillus elymi sp. nov., isolated from the rhizosphere of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea
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Paenibacillus nebraskensis sp. nov., isolated from the root surface of field-grown maize
Peter Kämpfer, Hans-Jürgen Busse, John A. McInroy, Chia-Hui Hu, Joseph W. Kloepper, Stefanie P. Glaeser
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(12): 4956. CrossRef - Paenibacillus rhizoplanae sp. nov., isolated from the rhizosphere of Zea mays
Peter Kämpfer, Hans-Jürgen Busse, John A. McInroy, Chia-Hui Hu, Joseph W. Kloepper, Stefanie P. Glaeser International Journal of Systematic and Evolutionary Microbiology.2017; 67(4): 1058. CrossRef -
Paenibacillus panaciterrae sp. nov., isolated from ginseng-cultivated soil
Ngoc-Lan Nguyen, Yeon-Ju Kim, Van-An Hoang, Jong-Pyo Kang, Priyanka Singh, Deok-Chun Yang
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.2015; 65(Pt_11): 4080. CrossRef - Genome-Based Comparative Analyses of Antarctic and Temperate Species of Paenibacillus
Melissa Dsouza, Michael W. Taylor, Susan J. Turner, Jackie Aislabie, Patrick C. Y. Woo PLoS ONE.2014; 9(10): e108009. CrossRef - Bacterial community structure in fumigated soil
Cristina A. Domínguez-Mendoza, Juan M. Bello-López, Yendi E. Navarro-Noya, Arit S. de León-Lorenzana, Laura Delgado-Balbuena, Selene Gómez-Acata, Victor M. Ruíz-Valdiviezo, Daniel A. Ramirez-Villanueva, Marco Luna-Guido, Luc Dendooven Soil Biology and Biochemistry.2014; 73: 122. CrossRef - Paenibacillus darwinianus sp. nov., isolated from gamma-irradiated Antarctic soil
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taihuensis sp. nov., isolated from an eutrophic lake
Yu-Fan Wu, Qing-Long Wu, Shuang-Jiang Liu
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.2013; 63(Pt_10): 3652. CrossRef - Identification and Characterization of Psychrotolerant Sporeformers Associated with Fluid Milk Production and Processing
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Paenibacillus wooponensis sp. nov., isolated from wetland freshwater
Keun Sik Baik, Han Na Choe, Seong Chan Park, Eun Mi Kim, Chi Nam Seong
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.2011; 61(11): 2763. CrossRef - List of new names and new combinations previously effectively, but not validly, published
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- Paenibacillus filicis sp. nov., Isolated from the Rhizosphere of the Fern
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Byung-Chun Kim , Mi Na Kim , Kang Hyun Lee , Sun Beom Kwon , Kyung Sook Bae , Kee-Sun Shin
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J. Microbiol. 2009;47(5):524-529. Published online October 24, 2009
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DOI: https://doi.org/10.1007/s12275-009-0266-8
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A Gram-positive and endospore-forming bacterial strain, designated S4T, was isolated from the rhizosphere of ferns in Daejeon, Republic of Korea. This isolate is strictly aerobic, motile, and rod-like in shape, and it is positive for catalase, oxidase, esterase lipase, and β-galactosidase activities. In addition, this strain
grows when cultured at temperatures between 15 and 37°C and at pH values ranging from 5.5 to 9.0. The DNA G+C content was determined to be 53.2 mol%. Strain S4T has meso-diaminopimelic acid in the cell-wall peptidoglycan; it also contains menaquinone 7 (MK-7) as the predominant isoprenoid quinone and
anteiso-C15:0 (57.5%), iso-C16:0 (11.3%), and C16:0 (9.4%) as the major cellular fatty acids. Phylogenetic analysis based on alignments of the 16S rRNA gene sequence showed that S4T is affiliated with a cluster of strains within the genus Paenibacillaceae and is most closely related to Paenibacillus chinjuensis WN9T,
with 96.8% similarity. Based on the phylogenetic and phenotypic characteristics of strain S4T, we believe that this isolate should be distinguished from all type species of the genus Paenibacillus and should thus represent a novel taxon within the genus Paenibacillus. We propose naming this type species Paenibacillus filicis sp. nov. for the rhizosphere isolate; the type strain will be known as S4T (=KCTC 13693T =KACC 14197T =JCM 16417T).
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Citations
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- Bacterias rizosféricas asociadas a Dryopteris pseudofilix-mas (Dryopteridaceae) en el Monte Tláloc, México
Rosa Mireya López Ambrocio, Ronald Ferrera Cerrato, Juan J. Almaraz, Libia Iris Trejo Téllez, Leticia Pacheco, Ma. Cristina Gpe. López Peralta, Oscar García Barradas, Sandra Cortés Pérez, Azareel Angulo Castro Revista de Biología Tropical.2026; 73(1): e2025. CrossRef - Paenibacillus gyeongsangnamensis sp. nov., Isolated from Soil
Hyosun Lee, Dhiraj Kumar Chaudhary, Dong-Uk Kim Journal of Microbiology and Biotechnology.2024; 34(8): 1636. CrossRef - Paenibacillus puerhi sp. nov., isolated from the rhizosphere soil of Pu-erh tea plants (Camellia sinensis var. assamica)
Rui-Juan Yang, De Zhou, Qiao-Mei Wang, Xing-Hua Wang, Wen-Jie Zhang, Li Zhuang, Xuan-Jun Wang, Liang Yan, Jie Lv, Jun Sheng Archives of Microbiology.2021; 203(4): 1375. CrossRef - Paenibacillus konkukensis sp. nov., isolated from animal feed
Wan-Taek Im, Kwon-Jung Yi, Sang-Suk Lee, Hyung In Moon, Che Ok Jeon, Dong-Woon Kim, Soo-Ki Kim International Journal of Systematic and Evolutionary Microbiology.2017; 67(7): 2343. CrossRef - Paenibacillus cucumis sp. nov. isolated from greenhouse soil
Jae-Hyung Ahn, Byoung-chan Kim, Byung-Yong Kim, Soo-Jin Kim, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon Journal of Microbiology.2014; 52(6): 460. CrossRef -
Paenibacillus vulneris sp. nov., isolated from a necrotic wound
Stefanie P. Glaeser, Enevold Falsen, Hans-Jürgen Busse, Peter Kämpfer
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_2): 777. CrossRef - Identification and Characterization of Psychrotolerant Sporeformers Associated with Fluid Milk Production and Processing
Reid A. Ivy, Matthew L. Ranieri, Nicole H. Martin, Henk C. den Bakker, Bruno M. Xavier, Martin Wiedmann, Kathryn J. Boor Applied and Environmental Microbiology.2012; 78(6): 1853. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology
.2010; 60(1): 1. CrossRef - Paenibacillus pini sp. nov., a cellulolytic bacterium isolated from the rhizosphere of pine tree
Byung-Chun Kim, Kang Hyun Lee, Mi Na Kim, Eun-Mi Kim, Sung Ran Min, Hyun Soon Kim, Kee-Sun Shin The Journal of Microbiology.2009; 47(6): 699. CrossRef
- Paenibacillus camelliae sp. nov., Isolated from Fermented Leaves of Camellia sinensis
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Hyun-Woo Oh , Byung-Chun Kim , Kang Hyun Lee , Do Young Kim , Doo-Sang Park , Hee-Moon Park , Kyung Sook Bae
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J. Microbiol. 2008;46(5):530-534. Published online October 31, 2008
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DOI: https://doi.org/10.1007/s12275-008-0233-9
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A novel bacterium, strain b11s-2T was isolated from Pu’er tea. The isolate was Gram-positive, endosporeforming motile rod that grew at 15~42°C and pH 6.0~10.2. The DNA G+C content was 48.3 mol%, the predominant isoprenoid quinone was MK-7, and the predominant cellular fatty acid was anteiso-C15:0 (54.2%) followed by C16:0 (15.5%) and iso-C16:0 (8.2%). The polar lipid pattern of b11s-2T was characterized by the presence of diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol. Phylogenetic analysis based on 16S rRNA gene sequence showed that the strain was affiliated within the Paenibacillaceae. The strain was most closely related to Paenibacillus granivorans A30T, with a similarity of 97.1%. Based on the phylogenetic and phenotypic characteristics of strain b11s-2T, the isolate is thought to represent a novel taxon in the genus Paenibacillus. The name Paenibacillus camelliae sp. nov. is proposed for the fermented tea isolate; the type strain is b11s-2T (= KCTC 13220T= CECT 7361T).
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International Journal of Systematic and Evolutionary Microbiology
.2016; 66(12): 5000. CrossRef - Paenibacillus puernese sp. nov., a β-glucosidase-producing bacterium isolated from Pu’er tea
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Hyun-Sook Kim, Sathiyaraj Srinivasan, Sang-Seob Lee Current Microbiology.2015; 70(6): 865. CrossRef - An Integrated Metagenomics/Metaproteomics Investigation of the Microbial Communities and Enzymes in Solid-state Fermentation of Pu-erh tea
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Lili Niu, Tianyi Tang, Zhongliang Ma, Lei Song, Kegui Zhang, Yuanyuan Chen, Ziyi Hua, Xing Hu, Meng Zhao
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.2015; 65(Pt_11): 3806. CrossRef - Paenibacillus wenxiniae sp. nov., a nifH gene -harbouring endophytic bacterium isolated from maize
Jun-lian Gao, Fan-yang Lv, Xu-ming Wang, Tian-lei Qiu, Mei Yuan, Ji-wei Li, Yi Zhou, Jian-guang Sun Antonie van Leeuwenhoek.2015; 108(5): 1015. CrossRef -
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Jibing Li, Qin Lu, Ting Liu, Shungui Zhou, Guiqin Yang, Yong Zhao
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_11): 3891. CrossRef - Structure and dynamics of the bacterial communities in fermentation of the traditional Chinese post-fermented pu-erh tea revealed by 16S rRNA gene clone library
Ming Zhao, Wei Xiao, Yan Ma, Tingting Sun, Wenxia Yuan, Na Tang, Donglian Zhang, Yongxia Wang, Yali Li, Hongjie Zhou, Xiaolong Cui World Journal of Microbiology and Biotechnology.2013; 29(10): 1877. CrossRef -
Paenibacillus catalpae sp. nov., isolated from the rhizosphere soil of Catalpa speciosa
Jian Zhang, Zi-Ting Wang, Hui-Min Yu, Yuchao Ma
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_5): 1776. CrossRef -
Paenibacillus oceanisediminis sp. nov. isolated from marine sediment
Jina Lee, Na-Ri Shin, Mi-Ja Jung, Seong Woon Roh, Min-Soo Kim, Jung-Sook Lee, Keun Chul Lee, Young-Ok Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_2): 428. CrossRef - Paenibacillus xylaniclasticus sp. nov., a xylanolytic-cellulolytic bacterium isolated from sludge in an anaerobic digester
Chakrit Tachaapaikoon, Somboon Tanasupawat, Patthra Pason, Somphit Sornyotha, Rattiya Waeonukul, Khin Lay Kyu, Khanok Ratanakhanokchai Journal of Microbiology.2012; 50(3): 394. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology
.2010; 60(11): 2509. CrossRef
- Diversity of Yeasts Associated with Panax ginseng
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Soon Gyu Hong , Kang Hyun Lee , Jangyul Kwak , Kyung Sook Bae
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J. Microbiol. 2006;44(6):674-679.
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DOI: https://doi.org/2457 [pii]
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Abstract
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Biodiversity of yeasts was investigated in the ginseng cultivation field. Among 34 isolates tested in this study, 26 isolates belonged to the hymenomycetous yeast group. These 26 strains were classified into 12 species including four new-species candidates that did not have clear affiliation to any established species. Seven isolates among the remaining strains were classified into three ascomycetous yeast species, and one isolate was identified as a urediniomycetous yeast species.
- Isolation and Characterization of Bacteria Associated with Two Sand Dune Plant Species, Calystegia soldanella and Elymus mollis
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Myung Soo Park , Se Ra Jung , Myoung Sook Lee , Kyoung Ok Kim , Jin Ok Do , Kang Hyun Lee , Seung Bum Kim , Kyung Sook Bae
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J. Microbiol. 2005;43(3):219-227.
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DOI: https://doi.org/2223 [pii]
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Abstract
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Little is known about the bacterial communities associated with the plants inhabiting sand dune ecosystems. In this study, the bacterial populations associated with two major sand dune plant species, Calystegia soldanella (beach morning glory) and Elymus mollis (wild rye), growing along the costal areas in Tae-An, Chungnam Province, were analyzed using a culture-dependent approach. A total of 212 bacteria were isolated from the root and rhizosphere samples of the two plants, and subjected to further analysis. Based on the analysis of the 16S rDNA sequences, all the bacterial isolates were classified into six major phyla of the domain Bacteria. Significant differences were observed between the two plant species, and also between the rhizospheric and root endophytic communities. The isolates from the rhizosphere of the two plant species were assigned to 27 different established genera, and the root endophytic bacteria were assigned to 21. Members of the phylum Gammaproteobacteria, notably the Pseudomonas species, comprised the majority of both the rhizospheric and endophytic bacteria, followed by members of Bacteroidetes and Firmicutes in the rhizosphere and Alphaproteobacteria and Bacteroidetes in the root. A number of isolates were recognized as potentially novel bacterial taxa. Fifteen out of 27 bacterial genera were commonly found in the rhizosphere of both plants, which was comparable to 3 out of 21 common genera in the root, implying the host specificity for endophytic populations. This study of the diversity of culturable rhizospheric and endophytic bacteria has provided the basis for further investigation aimed at the selection of microbes for the facilitation of plant growth.
- Diversity of Yeasts Associated with Natural Environments in Korea
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Soon Gyu Hong , Kang Hyun Lee , Kyung Sook Bae
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J. Microbiol. 2002;40(1):55-62.
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Biodiversity of yeasts in various natural environments including soils, swamps and plants was investigated. By molecular identification methods based on the partial sequences of 26S rDNA, 69 isolates were assigned to 44 taxa including 27 known species. The remaining 17 taxa could potentially form new species. All of them were classified into Ascomycota, Hymenomycetes, Urediniomycetes and Ustilaginomycetes. Ascomycetous and ustilaginomycetous yeasts were generally isolated from flower samples, and hymenomycetous and urediniomycetous yeasts were generally isolated from soil samples. Distribution of yeast groups exhibited geographical variation. Yeast biodiversity of root soil also varied according to the associated plant species.
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