- Description of Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp. nov., and Luteibacter aegosomatissinici sp. nov. isolated from the Intestines of Aegosoma sinicum Larvae
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Hae-In Joe , Jee-Won Choi , June-Young Lee , Hojun Sung , Su-Won Jeong , Yun-Seok Jeong , Jae-Yun Lee , Jin-Woo Bae
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J. Microbiol. 2023;61(6):603-613. Published online May 5, 2023
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DOI: https://doi.org/10.1007/s12275-023-00051-7
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Three novel bacterial strains, 321T,
335T,
and 353T,
were isolated from the intestines of Aegosoma sinicum larvae collected
from Paju-Si, South Korea. The strains were Gram-negative, obligate aerobe and had rod-shaped cells with a single flagellum.
The three strains belonged to the genus Luteibacter in the family Rhodanobacteraceae and shared < 99.2% similarity
in their 16S rRNA gene sequence and < 83.56% similarity in thier whole genome sequence. Strains 321T,
335T,
and 353T
formed a monophyletic clade with Luteibacter yeojuensis KACC 11405T,
L. anthropi KACC 17855T,
and L. rhizovicinus
KACC 12830T,
with sequence similarities of 98.77–98.91%, 98.44–98.58%, and 97.88–98.02%, respectively. Further
genomic analyses, including the construction of the Up-to-date Bacterial Core Gene (UBCG) tree and assessment of other
genome-related indices, indicated that these strains were novel species belonging to the genus Luteibacter. All three strains
contained ubiquinone Q8 as their major isoprenoid quinone and iso-C15:0 and summed feature 9 (
C16:0 10-methyl and/or
iso-C17:1 ω9c) as their major cellular fatty acids. Phosphatidylethanolamine and diphosphatidylglycerol were the major polar
lipids in all the strains. The genomic DNA G + C contents of strains 321T,
335T,
and 353T
were 66.0, 64.5, and 64.5 mol%,
respectively. Based on multiphasic classification, strains 321T,
335T,
and 353T
were classified into the genus Luteibacter
as the type strains of novel species, for which the names Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp.
nov., and Luteibacter aegosomatissinici sp. nov. are proposed, respectively.
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Citations
Citations to this article as recorded by  - Symbiotic Bacterial Diversity, Functional Profiling and Antibiotic Susceptibility of the Red Imported Fire Ant
Yukang Xin, Lei Chen, Munazza Ijaz, Rui Chen, Natasha Manzoor, Alhassan Alrafaie, Xiao Wang, Jinyan Luo, Bin Li, Linfei Shou
Microorganisms.2026; 14(4): 808. CrossRef - Favorable habitats of endangered halophytes harbor unique soil properties and bacterial communities, with a dominant root-associated genus promoting host plant growth
Hinako Kubo, Riku Murakami, Kodai Kato, Manami Tsuna, Takahiko Koizumi, Haruko Saito, Taku Kato, Minenosuke Matsutani, Hikaru Sakamoto, Hiromasa Saitoh, Kosuke Yamamoto
Frontiers in Soil Science.2026;[Epub] CrossRef - First metagenome- and metatranscriptome dataset of Thecaphora frezzii teliospores, assembly and annotation of a new bacterial genome
Renee S. Arias, John T. Dobbs, Valerie A. Orner, E. Cinthia Conforto, Alejandro M. Rago, Luis I. Cazon, Victor S. Sobolev, Imana L. Power, Marshall C. Lamb, Alicia N. Massa
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Current Microbiology.2024;[Epub] CrossRef - Validation List no. 215. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef
- Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
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Su-Won Jeong , Jeong Eun Han , June-Young Lee , Ji-Ho Yoo , Do-Yeon Kim , In Chul Jeong , Jee-Won Choi , Yun-Seok Jeong , Jae-Yun Lee , So-Yeon Lee , Euon Jung Tak , Hojun Sung , Hyun Sik Kim , Pil Soo Kim , Dong-Wook Hyun , Jin-Woo Bae
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J. Microbiol. 2022;60(6):576-584. Published online April 18, 2022
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DOI: https://doi.org/10.1007/s12275-022-1604-3
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1,029
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Three aerobic, Gram-negative, and rod-shaped bacterial strains,
designated strains G4M1T, SM13T, and L12M9T, were isolated
from the gut of Batillaria multiformis, Cellana toreuma, and
Patinopecten yessoensis collected from the Yellow Sea in South
Korea. All the strains grew optimally at 25°C, in the presence
of 2% (w/v) NaCl, and at pH 7. These three strains, which
belonged to the genus Polaribacter in the family Flavobacteriaceae,
shared < 98.8% in 16S rRNA gene sequence and < 86.68%
in whole-genome sequence with each other. Compared with
the type strains of Polaribacter, isolates showed the highest
sequence similarity to P. haliotis KCTC 52418T (< 98.68%),
followed by P. litorisediminis KCTC 52500T (< 98.13%). All
the strains contained MK-6 as their predominant menaquinone
and iso-C15:0 as their major fatty acid. Moreover, all the
strains had phosphatidylethanolamine as their polar lipid
component. In addition, strain G4M1T had two unidentified
lipids and three unidentified aminolipids, strain SM13T had
three unidentified lipids and three unidentified aminolipids,
and strain L12M9T had three unidentified lipids and one unidentified
aminolipid. The DNA G + C contents of strains
G4M1T, SM13T, and L12M9T were 31.0, 30.4, and 29.7 mol%,
respectively. Based on phenotypic, phylogenetic, chemotaxonomic,
and genotypic findings, strains G4M1T (= KCTC 82388T
= DSM 112372T), SM13T (= KCTC 82389T = DSM 112373T),
and L12M9T (= KCTC 62751T = DSM 112374T) were classified
into the genus Polaribacter as the type strains of novel
species, for which the names Polaribacter batillariae sp. nov.,
Polaribacter cellanae sp. nov., and Polaribacter pectinis sp.
nov., respectively, have been proposed.
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Citations
Citations to this article as recorded by - Characterization of Polaribacter formosus sp. nov. and Polaribacter salmoneus sp. nov. with Comparative Genomic Analysis of the Genus Polaribacter
Dandan Zhang, Yuqi Ye, Siyu An, Fang Luan, Zongjun Du
Microorganisms.2026; 14(10): 2227. CrossRef - Polaribacter uvawellassae sp. nov., a Member of the Family Flavobacteriaceae Isolated from Mud Crab (Scylla serrata)
W. M. Lakshani Anuradha Wanasinghe, Wang Xin, Yuan Siliang, Dongru Qiu
Current Microbiology.2025;[Epub] CrossRef - Isolation and characterization of Polaribacter sargassicola sp. nov. and Algibacter ulvanivorans sp. nov.: two novel species with ability to degrade algal polysaccharides
Jin Li, Aihua Mao, Chao Peng, Linhui Li, Binghan Li, Lijuan Zhou, Yan Xu, Mingqi Zhong, Zhong Hu
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - The juvenile Antarctic whelk Neobuccinum eatoni maintains a specialized microbiome in its proboscis even in adulthood
Emanuela Buschi, Michael Tangherlini, Marco Lo Martire, Cinzia Corinaldesi
Polar Biology.2025;[Epub] CrossRef - Unique skin microbiome: insights to understanding bacterial symbionts in octopuses
Chelsea O. Bennice, Lauren E. Krausfeldt, W. Randy Brooks, Jose V. Lopez
Frontiers in Marine Science.2024;[Epub] CrossRef - An update on novel taxa and revised taxonomic status of bacteria isolated from aquatic host species described in 2022–2023
Claire R. Burbick, Sara D. Lawhon, Brittany Bukouras, Giovanna Lazzerini, Erik Munson, Romney M. Humphries
Journal of Clinical Microbiology.2024;[Epub] CrossRef -
Polaribacter ponticola sp. nov., isolated from seawater, reclassification of Polaribacter undariae as a later heterotypic synonym of Polaribacter sejongensis, and emended description of Polaribacter sejongensis Kim et al. 2013
Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Rhodobacteraceae are Prevalent and Ecologically Crucial Bacterial Members in Marine Biofloc Aquaculture
Meora Rajeev, Jang-Cheon Cho
Journal of Microbiology.2024; 62(11): 985. CrossRef - Validation List no. 207. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn
Do-Yeon Kim, In-Chul Jeong, So-Yeon Lee, Yun-Seok Jeong, Jeong Eun Han, Euon Jung Tak, June-Young Lee, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef
- Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds
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So-Yeon Lee , Hojun Sung , Pil Soo Kim , Hyun Sik Kim , Jae-Yun Lee , June-Young Lee , Yun-Seok Jeong , Euon Jung Tak , Jeong Eun Han , Dong-Wook Hyun , Jin-Woo Bae
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J. Microbiol. 2021;59(11):978-987. Published online September 27, 2021
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DOI: https://doi.org/10.1007/s12275-021-1323-1
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969
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Phenotypic and genomic analyses were performed to characterize
two novel species, H23M54T and AMA3305T, isolated
from the faeces of the Oriental stork (Ciconia boyciana) and
the cinereous vulture (Aegypius monachus), respectively. Strains
H23M54T and AMA3305T showed the highest similarities of
16S rRNA gene sequences and complete genome sequences
with Ornithinimicrobium cavernae CFH 30183T (98.5% of 16S
rRNA gene sequence similarity and 82.1% of average nucleotide
identity, ANI) and O. pekingense DSM 21552T (98.5% of
16S rRNA gene sequence similarity and 82.3% of ANI), respectively.
Both strains were Gram-stain-positive, obligate aerobes,
non-motile, non-spore-forming, and coccoid- and rodshaped.
Strain H23M54T grew optimally at 25–30°C and pH
8.0 and in the presence of 1.5–2% (wt/vol) NaCl, while strain
AMA3305T grew optimally at 30°C and pH 7.0 and in the presence
of 1–3% (wt/vol) NaCl. Both strains had iso-C15:0, iso-
C16:0, and summed feature 9 (iso-C17:1 ω9c and/or C16:0 10-
methyl) as major cellular fatty acids. MK-8 (H4) was identified
as the primary respiratory quinone in both strains. Strains
H23M54T and AMA3305T possessed diphosphatidylglycerol
and phosphatidylglycerol as major polar lipids. Moreover,
strains H23M54T and AMA3305T commonly contained ribose
and glucose as major sugars and L-ornithine, L-alanine,
glycine, and aspartic acid as major amino acids. The polyphasic
taxonomic data indicate that strains H23M54T and AMA3305T
represent novel species of the genus Ornithinimicrobium. We
propose the names Ornithinimicrobium ciconiae sp. nov. and
Ornithinimicrobium avium sp. nov. for strains H23M54T (= KCTC 49151T = JCM 33221T) and AMA3305T (= KCTC
49180T = JCM 32873T), respectively.
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Citations
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Yuqing Liu, Ji Pu, Wenbo Luo, Han Wang, Hao Zhou, Jiali Chen, Ying Li, Jing Yang, Lili Ren, Jianguo Xu
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Yuyuan Huang, Suping Zhang, Yuanmeihui Tao, Jing Yang, Shan Lu, Dong Jin, Ji Pu, Wenbo Luo, Han Zheng, Liyun Liu, Jia-fu Jiang, Jianguo Xu
Frontiers in Cellular and Infection Microbiology.2023;[Epub] CrossRef - Description of Ornithinimicrobium cryptoxanthini sp. nov., a Novel Actinomycete Producing β-cryptoxanthin Isolated from the Tongtian River Sediments
Yuyuan Huang, Yifan Jiao, Sihui Zhang, Yuanmeihui Tao, Suping Zhang, Dong Jin, Ji Pu, Liyun Liu, Jing Yang, Shan Lu
Journal of Microbiology.2023; 61(4): 379. CrossRef - An update on novel taxa and revised taxonomic status of bacteria isolated from non-domestic animals described in 2022
Claire R. Burbick, Sara D. Lawhon, Erik Munson, Elizabeth Thelen, Amanda Zapp, Anastasia Wilson, Romney M. Humphries
Journal of Clinical Microbiology.2023;[Epub] CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM
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.2022;[Epub] CrossRef - Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
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Journal of Microbiology.2022; 60(5): 469. CrossRef
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