- UACG: Up‑to‑Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction
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Seong-In Na , Michael James Bailey , Mauricio Chalita , Jae Hyoung Cho , Jongsik Chun
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J. Microbiol. 2023;61(7):683-692. Published online August 11, 2023
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DOI: https://doi.org/10.1007/s12275-023-00064-2
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1,069
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 Abstract
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In the post-genomic era, phylogenomics is a powerful and routinely-used tool to discover evolutionary relationships between
microorganisms. Inferring phylogenomic trees by concatenating core gene sequences into a supermatrix is the standard
method
. The previously released up-to-date bacterial core gene (UBCG) tool provides a pipeline to infer phylogenomic trees
using single-copy core genes for the Bacteria domain. In this study, we established up-to-date archaeal core gene (UACG),
comprising 128 genes suitable for inferring archaeal phylogenomic trees. To test the gene set, we selected the Haloarcula
genus and scrutinized its phylogeny. The phylogeny inferred using the UACG tool was consistent with the orthoANIu
dendrogram, whereas the 16S rRNA gene phylogeny showed high intragenomic heterogeneity resulting in phylogenetic
discrepancies. The software tool using the UACG set is available at https:// www. ezbio cloud. net/ tools/ uacg.
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Citations
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Methanosarcina mangrovi sp. nov. and Methanosarcina sediminis sp. nov., two novel methanogenic archaea isolated from mangrove sediments
Jinjie Zhou, Huidan Tan, Cui-Jing Zhang, Meng LI
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Branched-chain amino acid specialization drove diversification within Calditenuaceae (Caldarchaeia) and enables their cultivation
Dengxun Lai, Damon Mosier, Marike Palmer, Xavier Mayali, Juliet Johnston, Walter Saldivar, Jonathan K. Covington, Jian-Yu Jiao, Ranjani Murali, Cale O. Seymour, Lan Liu, Zheng-Shuang Hua, Wen-Jun Li, Peter K. Weber, Jennifer Pett-Ridge, Daniel R. Colman,
Nature Communications.2026;[Epub] CrossRef - Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Raúl Riesco, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef
- Proposal of a health gut microbiome index based on a meta-analysis of Korean and global population datasets
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Hyun-Seok Oh , Uigi Min , Hyejin Jang , Namil Kim , Jeongmin Lim , Mauricio Chalita , Jongsik Chun
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J. Microbiol. 2022;60(5):533-549. Published online March 31, 2022
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DOI: https://doi.org/10.1007/s12275-022-1526-0
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1,204
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15
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Abstract
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The disruption of the human gut microbiota has been linked
to host health conditions, including various diseases. However,
no reliable index for measuring and predicting a healthy microbiome
is currently available. Here, the sequencing data of
1,663 Koreans were obtained from three independent studies.
Furthermore, we pooled 3,490 samples from public databases
and analyzed a total of 5,153 fecal samples. First, we analyzed
Korean gut microbiome covariates to determine the influence
of lifestyle on variation in the gut microbiota. Next, patterns
of microbiota variations across geographical locations and
disease statuses were confirmed using a global cohort and disease
data. Based on comprehensive comparative analysis, we
were able to define three enterotypes among Korean cohorts,
namely, Prevotella type, Bacteroides type, and outlier type.
By a thorough categorization of dysbiosis and the evaluation
of microbial characteristics using multiple datasets, we identified
a wide spectrum of accuracy levels in classifying health
and disease states. Using the observed microbiome patterns,
we devised an index named the gut microbiome index (GMI)
that could consistently predict health conditions from human
gut microbiome data. Compared to ecological metrics, the
microbial marker index, and machine learning approaches,
GMI distinguished between healthy and non-healthy individuals
with a higher accuracy across various datasets. Thus,
this study proposes a potential index to measure health status
of gut microbiome that is verified from multiethnic data
of various diseases, and we expect this model to facilitate further
clinical application of gut microbiota data in future.
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- UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis
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Jihyeon Kim , Seong-In Na , Dongwook Kim , Jongsik Chun
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J. Microbiol. 2021;59(6):609-615. Published online May 29, 2021
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DOI: https://doi.org/10.1007/s12275-021-1231-4
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1,230
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Abstract
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Phylogenomic tree reconstruction has recently become a
routine and critical task to elucidate the evolutionary relationships
among bacterial species. The most widely used method
utilizes the concatenated core genes, universally present in a
single-copy throughout the bacterial domain. In our previous
study, a bioinformatics pipeline termed Up-to-date Bacterial
Core Genes (UBCG) was developed with a set of bacterial core
genes selected from 1,429 species covering 28 phyla. In this
study, we revised a new bacterial core gene set, named UBCG2,
that was selected from the more extensive genome sequence
set belonging to 3,508 species spanning 43 phyla. UBCG2 comprises
81 genes with nine Clusters of Orthologous Groups of
proteins (COGs) functional categories. The new gene set and
complete pipeline are available at http://leb.snu.ac.kr/ubcg2.
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International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Ammonicoccus luteus sp. nov., a novel actinobacterium isolated from the intestine of Argyrosomus argentatus
Fei Yang, Haifei Liu, Jiawei Li, Caifei Li, Ding Li, Ying Sun, Lifang Yang, Mingguo Jiang
Archives of Microbiology.2026;[Epub] CrossRef - Shinella agrisoli sp. nov., Isolated from a Pymetrozine-Degrading Bacterial Community
Delong Kong, Yuanyang Yi, Hao Xu, Siya Wu, Xu Jiang, Zhiyong Ruan, Wei Zhang
Current Microbiology.2026;[Epub] CrossRef - The van Niel international prize for studies in bacterial systematics, awarded in 2026 to Jon Jongsik Chun
Iain C. Sutcliffe, Edward R. B. Moore, Aharon Oren
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Genomic and structural insights into the high-efficiency poly(3-hydroxybutyrate) biodegradation in Terrabacter sp. AAH1
Sunho Park, Ji Hyuk Ko, Chaeyeon Yang, Seohyun Jeong, Jisu Kim, Seunghui Kwak, Hyunji Lee, Subin Yook, Chunghwan Baek, Jae Young Lee, Taegun Seo
Frontiers in Microbiology.2026;[Epub] CrossRef - Genomic sequencing of vineyard-isolated Bacillus strains and comparison with closely related Bacillus species reveals a putative new lineage, distinct pan-genome architecture and secondary metabolism potential
Adeoye J. Kayode, Edwin I. Wanjofu, Mathabatha Evodia Setati
Frontiers in Microbiology.2026;[Epub] CrossRef - Albidovulum molybdatiresistens sp. nov., a molybdate-resistant bacterium isolated from river water
Yuanshuo Qiu, Jianjun Song, Jia Wang, Donghui Sun, Xiuting Zhang, Hanyun Cui, Menghan Kang, Yanfang Zhao, Zhenbiao Xu, Aijv Liu, Rui Zhang, Hongliang Liu
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Prauseria antiqua gen. nov., sp. nov., a New Member of the Actinomycete Family Jiangellaceae
E. V. Ariskina, A. N. Avtukh, S. V. Tarlachkov, L. V. Dorofeeva, A. V. Borisov, L. I. Evtushenko
Microbiology.2026; 95(5): 729. CrossRef - Rhodococcus folensis sp. nov., an orange-red-pigmented bacterium from mining soil
Aleyna Nalcaoglu Senocak, Omer Faruk Ozturk, Miray Kilic, Ersan Bektas, Ali Osman Belduz, Kadriye Inan Bektas
Scientific Reports.2026;[Epub] CrossRef -
Anaerostipes stercorihominis sp. nov., isolated from human faeces
Tomoki Tanabe, Atsushi Hisatomi, Moriya Ohkuma, Mitsuo Sakamoto, Akihito Endo
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Faecalibacterium harmsenii sp. nov., an abundant but previously overlooked Faecalibacterium in the human gut
Qiqi Pan, Eleni Tsompanidou, Wenbing Hu, Muhammad Tanweer Khan, Jan Maarten van Dijl
ISME Communications.2026;[Epub] CrossRef - Isolation and Genomic Characterisation of Five Novel Lytic Bacteriophages Infecting the Emerging Pathogen Klebsiella grimontii
Anna Tokmakova, Anna Lukianova, Mikhail Shneider, Ilia Putilov, Maria Filatova, Anna Burtseva, Konstantin M. Boyko, Yuliya Mikhailova, Andrey Shelenkov, Elizaveta Popova, Konstantin Miroshnikov
Viruses.2026; 18(9): 942. CrossRef - Twenty-two novel glacier Pseudomonas species expand cultivated representation: nitrogen-cycling potential and temperature-responsive proteomes
Chan Zhao, Lei-Lei Yang, Yu-Hua Xin, Qing Liu
ISME Communications.2026;[Epub] CrossRef - Rhizobacterial biocontrol of potato late blight and genomic insights into disease suppression and growth promotion
Bekele Gelena Kelbessa, Samrat Ghosh, Farideh Ghadamgahi, Vittoria Catara, Stephen C. Whisson, Rodomiro Ortiz, Ramesh Raju Vetukuri
iScience.2026; 29(10): 117682. CrossRef - Phylogenetic and functional genomic heterogeneity of Bordetella bronchiseptica isolates from culture collections
PV Asmaeva, OYu Borisova, AS Pimenova, IYu Andrievskaya, AV Chaplin, LI Kafarskaya, BA Efimov, PV Evseev
Bulletin of Russian State Medical University.2026;[Epub] CrossRef - Genome‐Enabled Characterisation of Fusarium sacchari as a Novel Root Rot Pathogen of Coconut
Kurubarahalli Narayanaswamy Pallavi, Muthakapalli Krishnareddy Prasannakumar, Raju Karan, Jayarama Reddy Harish, Keerti Sharma, Kattarigatta Topegowda Rangaswamy, Swathi Shivanagouda Patil, Hosahally Venkategowda Rame Gowda, Channappa Manjunatha, Pramesh
Plant Pathology.2026;[Epub] CrossRef - Allomesorhizobium aridi sp. nov., a novel symbiotic nitrogen-fixing species isolated from root nodules of Astragalus armatus growing in lead mine tailings in the Middle Atlas, Morocco
Soufiane Alami, Kaoutar Kaddouri, Zohra Chaddad, Mouad Lamrabet, Bacem Mnasri, Pierre-Emmanuel Courty, Mustapha missbah El Idrissi
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Proposal of Lactococcus intestinalis Sun et al. 2024 as a Later Heterotypic Synonym of Lactococcus muris Afrizal et al. 2023
Xin-Yu Zhu, Chun Tao Gu
Current Microbiology.2025;[Epub] CrossRef - Genomic insights into drug resistance and virulence determinants in rare pyomelanin-producing clinical isolates of Acinetobacter baumannii
Lipsa Panda, Krishnapriya GK, Ajit Ramesh Sawant, Santosh Kumar Singh, Minakshi Gupta, Sheela Devi C, P Shashikala, K Prashanth
European Journal of Clinical Microbiology & Infectious Diseases.2025; 44(3): 533. CrossRef - Taxonomic and genomic characterization of a siderophore-producing bacterium, Rhodoligotrophos ferricapiens sp. nov isolated from lettuce cultivation soil
Yu-Jin Kim, Yong-Seok Kim, Chang-Jun Cha
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Streptomyces yaizuensis sp. nov., a berninamycin C-producing actinomycete isolated from sponge
Miku Takahashi, Kanata Hoshino, Moriyuki Hamada, Tomohiko Tamura, Ryota Moriuchi, Hideo Dohra, Youji Nakagawa, Susumu Kokubo, Motoyuki Yamazaki, Hiroyuki Nakagawa, Masayuki Hayakawa, Shinya Kodani, Hideki Yamamura
The Journal of Antibiotics.2025; 78(1): 35. CrossRef - Proposal of Crystallibacter gen. nov., Crystallibacter permensis sp. nov. and Crystallibacter degradans sp. nov. for the salt-tolerant and aromatics degrading actinobacteria, and reclassification of Arthrobacter crystallopoietes as Crystallibacter crystal
Elena G. Plotnikova, Elena V. Ariskina, Olga V. Yastrebova, Natalia V. Potekhina, Alexander N. Avtukh, Sergey V. Tarlachkov, Irina P. Starodumova, Lyubov V. Dorofeeva, Lyudmila I. Evtushenko
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Description and genomic characterization of Mangrovibrevibacter kandeliae gen. nov. sp. nov., a novel carotenoid-producing endophytic bacterium isolated from branch of mangrove plants
Chengshao Zan, Zhouqing Zheng, Xiaohui Chen, Mingsheng Chen, Feina Li, Li Tuo
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Parasalinivibrio latis gen. nov., sp. nov., isolated from the distal gut of healthy farmed Asian Seabass (Lates calcarifer)
Shuan Er, Melissa Soh, Adrian Low, Henning Seedorf
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Phenotypic and Complete Reference Whole Genome Sequence Analyses of Two Paenibacillus spp. Isolates from a Gray Wolf (Canis lupus) Gastrointestinal Tract
Jessika L. Bryant, Jennifer McCabe, C. Cristoph Klews, MiCayla Johnson, Ariel N. Atchley, Thomas W. Cousins, Maya Barnard-Davidson, Kristina M. Smith, Mark R. Ackermann, Michael Netherland, Nur A. Hasan, Peter A. Jordan, Evan S. Forsythe, Patrick N. Ball,
Veterinary Sciences.2025; 12(1): 51. CrossRef -
Flavobacterium magnesitis sp. nov. and Flavobacterium zubiriense sp. nov., two novel Flavobacterium species isolated from alkaline magnesite residues
Leonor Matos, Lorrie Maccarrio, Ana Paula Chung, Diogo N. Proença, Søren Sørensen, Paula V. Morais, Romeu Francisco
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Ascidiimonas meishanensis sp. nov. and Leptobacterium meishanense sp. nov., two bacteria isolated from marine sediment in the East China Sea
Hao Wang, Huiting Wang, Xinyu Liu, Dawoon Jung, Eun-Young Seo, Shan He, Weiyan Zhang, Lijian Ding
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Paenibacillus mesotrionivorans sp. nov., a Mesotrione-Degrading Strain Isolated from Soil
Ye Song, Yan Wu, Leyao Chen, Luyao Ruan, Minglai Wan, Bin Liu, Jian He, Baolong Zhang
Current Microbiology.2025;[Epub] CrossRef - Genomic and phenotypic characterisation of Leeuwenhoekiella obamensis sp. nov., a novel marine bacterium isolated from the surface water of a Japanese fishing port
Yuka Machii, Mao Tsukamoto, Takafumi Kataoka, Ryuji Kondo
Antonie van Leeuwenhoek.2025;[Epub] CrossRef -
Comamonas halotolerans sp. nov., isolated from the faecal sample of a zoo animal, Naemorhedus caudatus
Yerim Park, Bitnara Kim, Jihyeon Min, Woojun Park
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Gallibacterium faecale sp. nov., Isolated from Dairy Cow Feces
Seoung Woo Ryu, Jeong Chan Moon, Byeong Seob Oh, Seung Yeob Yu, Jeong Eun Bak, Eun Seo Heo, Seung-Hwan Park, Se Won Kang, Jiyoung Lee, Mi-Kyung Lee, Mooyoung Jung, Yo Han Choi, Hyeun Bum Kim, Jae-Kyung Kim, Ju-Hoon Lee, Ju Huck Lee
Current Microbiology.2025;[Epub] CrossRef - Reference Whole Genome Sequence Analyses and Characterization of a Novel Carnobacterium maltaromaticum Distinct Sequence Type Isolated from a North American Gray Wolf (Canis lupus) Gastrointestinal Tract
C. Cristoph Klews, Jessika L. Bryant, Jennifer McCabe, Ariel N. Atchley, Thomas W. Cousins, Maya Barnard-Davidson, Mark R. Ackermann, Michael Netherland, Nur A. Hasan, Peter A. Jordan, Evan S. Forsythe, Patrick N. Ball, Bruce S. Seal
Veterinary Sciences.2025; 12(5): 410. CrossRef - Genomic diversity and tracing of Paenibacillus larvae in Australia: implications for American foulbrood outbreak surveillance in low-diversity populations
Paul Worden, Ashlea Webster, Khushbu Gandhi, Risha Gupta, Ania T. Deutscher, Michael Hornitzky, Daniel Ross Bogema
Microbial Genomics
.2025;[Epub] CrossRef - Discovery of mono-ADP ribosylating toxins with high structural homology to Pseudomonas exotoxin A
Geoffrey Masuyer, Alistair Taverner, Julia MacKay, Ana Rita Lima Marques, Yuye Wang, Tom Hunter, Keyi Liu, Randall J. Mrsny
Communications Biology.2025;[Epub] CrossRef - Biocontrol Effect of Bacillus velezensis D7-8 on Potato Common Scab and Its Complete Genome Sequence Analysis
Yu Jiang, Pengfei He, Huihui Kong, Pengbo He, Yixin Wu, Guowen Tang, Ping Tang, Yining Di, Xingyu Li, Lufeng Liu, Shahzad Munir, Yueqiu He
Microorganisms.2025; 13(4): 770. CrossRef - House dust microbiome differentiation and phage-mediated antibiotic resistance and virulence dissemination in the presence of endocrine-disrupting chemicals and pharmaceuticals
Shicong Du, Huiju Lin, Qiong Luo, Chung Ling Man, Sze Han Lai, Kin Fai Ho, Kenneth M. Y. Leung, Patrick K. H. Lee
Microbiome.2025;[Epub] CrossRef - Fulvimarina uroteuthidis sp. nov., isolated from a marine invertebrate and Uroteuthis (Photololigo) edulis
Yea-Lin Moon, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Metabolic response of tellurite resistant Bacillus altitudinis strain 3W19 highlights the potential as a model organism for bioremediation
Pedro Farias, Romeu Francisco, Lorrie Maccario, Jakob Herschend, Søren J. Sørensen, Paula V. Morais
Scientific Reports.2025;[Epub] CrossRef - Reclassification of Bifidobacterium faecale Choi et al. 2014 as a later heterotypic synonym of Bifidobacterium adolescentis Reuter 1963
Shinnosuke Okuhama, Hidenori Takahashi, Yasunori Nakayama, Akihito Endo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Taxonomic revision of the family Aurantimonadaceae: proposal of Dennerimonas gen. nov., Mesocryomonas gen. nov., Rathsackimonas gen. nov. and Plantimonas gen. nov., along with the reclassification of Jeongeupella Jiang et al. 2024 as a later heterotypic s
Imed Sbissi, Hana Dali, Rihab Hamra, Emeni Boujemaa, Mohamed Aziz Haj Nasr, Faten Ghodhbane-Gtari, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Phylogenomics as baseline for taxonomy description: Amphibiibacter pelophylacis gen. nov., sp. nov., a novel taxon of the family Sphaerotilaceae, class Betaproteobacteria, isolated from the skin microbiota of Pelophylax perezi from different populations
Sara Costa, Diogo Neves Proença, Isabel Lopes, Paula V. Morais
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Description of Flavobacterium fructosi sp. nov., Flavobacterium xylosi sp. nov. and Flavobacterium zhouii sp. nov., three new members of the genus Flavobacterium
Dou Han, Lei-Lei Yang, Yu-Hua Xin, Qing Liu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Enterococcus hailinensis sp. nov., Isolated from Traditional Chinese Pickle
Ting-Yu Wang, Hao Wang, Chun Tao Gu
Current Microbiology.2025;[Epub] CrossRef - Genome-guided development of a bacterial two-strain system for low-temperature soil biocementation
Karol Ciuchcinski, Grzegorz Czerwonka, Przemyslaw Decewicz, Zofia Godlewska, Katarzyna Misiolek, Katarzyna Zegadlo, Michal Styczynski, Lukasz Dziewit
Applied Microbiology and Biotechnology.2025;[Epub] CrossRef - Familial Reclassification Within Order Lysobacterales and Proposal of Four Novel Species
Tengfei Ma, Haijiao Liu, Yafei Chen, Juan Liu, Chungen Piao, Han Xue, Risheng Xu, Yong Li
Microorganisms.2025; 13(6): 1212. CrossRef -
Draft genome sequences of
Thermus thermophilus
strains isolated from Japanese hot springs
Yu Sato, Masanori Hashino, Shintaro Maeno, Elinne Becket
Microbiology Resource Announcements.2025;[Epub] CrossRef - Structural basis of the catalytic and allosteric mechanism of bacterial acetyltransferase PatZ
Jun Bae Park, Gwanwoo Lee, Yu-Yeon Han, Dongwook Kim, Kyoo Heo, Jeesoo Kim, Juhee Park, Hyosuk Yun, Chul Won Lee, Hyun-Soo Cho, Jong-Seo Kim, Martin Steinegger, Yeong-Jae Seok, Soung-Hun Roh
Proceedings of the National Academy of Sciences.2025;[Epub] CrossRef - Lacticaseibacillus suihuaensis sp. nov., Isolated from Traditional Chinese Pickle
Xin-Yu Zhu, Chun Yan Li, Hao Wang, Chun Tao Gu
Current Microbiology.2025;[Epub] CrossRef - Idiomarina aminovorans sp. nov., a halophilic bacterium isolated from the Llamara salt pan in the Atacama Desert of northern Chile
Christian Hintersatz, Luis Antonio Rojas, Sean Ting-Shyang Wei, Sabine Kutschke, Angela Thewes, Falk Lehmann, Rohan Jain, Katrin Pollmann
Extremophiles.2025;[Epub] CrossRef - Design of genus-specific semi-nested primers for simple and accurate identification of Enterobacter strains
Sara Jordan, Joël F. Pothier, Pieter de Maayer, Kirk Broders, Brian H. Kvitko, Teresa A. Coutinho, Theo H. M. Smits
BMC Microbiology.2025;[Epub] CrossRef -
Single cell viral tagging of
Faecalibacterium prausnitzii
reveals rare bacteriophages omitted by other techniques
Danielle E. Campbell, Xiaofen Wu, Lindsey R. Hall, Dylan Lawrence, Jerome M. Molleston, Lawrence A. Schriefer, Lindsay Droit, James S. Weagley, Benjamin S. Olson, Joanna Rimmer, Miles Parkes, Scott A. Handley, Megan T. Baldridge
Gut Microbes.2025;[Epub] CrossRef - Lacticaseibacillus salsurae sp. nov. and Levilactobacillus muriae sp. nov., isolated from traditional Chinese pickle
Si-Tong Song, Ting-Yu Wang, Xin-Yu Zhu, Chun Tao Gu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Taxonomic rearrangement of Salinibacterium, Leifsonia, Diaminobutyricibacter, Antiquaquibacter, Homoserinimonas and Glaciibacter: refining genus boundaries and proposal of two new genera – Orlajensenia gen. nov. and Leifsonella gen. nov.
Maher Gtari, Dhouha Boussoufa, Faten Ghodhbane-Gtari, Imed Sbissi
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Bacteroides celer sp. nov. and Bacteroides mucinivorans sp. nov., isolated from human feces, and the reclassification of Bacteroides koreensis Shin et al. 2017 and Bacteroides kribbi Shin et al. 2017 as later heterotypic synonyms of Bacteroides ovatus Egg
Ah-In Yang, Bora Kim, Woorim Kang, Hae-In Joe, Na-Ri Shin
Journal of Microbiology.2025; 63(6): e2502006. CrossRef -
Pseudomonas lyxosi sp. nov., Pseudomonas arabinosi sp. nov. and Pseudomonas frigoris sp. nov., isolated from glaciers
Chan Zhao, Yu-Hua Xin, Qing Liu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Paenibacillus nanchangensis sp. nov., a Nitrogen-Fixing Strain Isolated from Agricultural Soil
Yan Wu, Leyun Dong, Bingbing Weng, Xiaozhen Shi, Ningning Wu, Jian He, Zongzhuan Shen, Jiandong Jiang, Qirong Shen
Current Microbiology.2025;[Epub] CrossRef - Unicore Enables Scalable and Accurate Phylogenetic Reconstruction with Structural Core Genes
Dongwook Kim, Sukhwan Park, Martin Steinegger, Caroline zz Puente-Lelievre
Genome Biology and Evolution.2025;[Epub] CrossRef - Haloimpatiens sporogenes sp. nov. and Haloimpatiens myeolchijeotgali sp. nov., anaerobic bacteria isolated from Myeolchi-jeot, a traditional Korean fermented anchovy
Yu Jeong Lee, Byung Hee Chun
Journal of Microbiology.2025; 63(7): e2504009. CrossRef - Ewingella docleensis sp. nov. isolated from artisanal Montenegrin komanski cheese
Beatriz Daza Prieto, Nadja Raicevic, Patrick Hyden, Adriana Cabal, Johann Ladstätter, Susanne Richter, Anna Stoeger, Robert L. Mach, Aleksandra Martinovic, Werner Ruppitsch
The Microbe.2025; 8: 100449. CrossRef -
Faecalibacterium langellae sp. nov. isolated from human faeces
Adeline Ang, Véronique Robert, Atsushi Hisatomi, Masahiro Hirasaki, Shintaro Maeno, Moriya Ohkuma, Mitsuo Sakamoto, Jean-Marc Chatel, Akihito Endo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-based reclassification of the genus Lactococcus and two novel species Pseudolactococcus yaeyamensis gen. nov., sp. nov. and Lactovum odontotermitis sp. nov. isolated from the gut of termites
Kota Abe, Masahiro Yuki, Yumiko Imagawa, Atsushi Hisatomi, Moriya Ohkuma, Mitsuo Sakamoto, Satoko Noda
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-Wide Insights into Streptomyces Novel Species Qhu-G9 and Its Potential for Enhancing Salt Tolerance and Growth in Avena sativa L. and Onobrychis viciifolia Scop
Xin Xiang, Xiaolan Ma, Hengxia Yin, Liang Chen, Jiao Li, Wenjing Li, Shuhan Zhang, Chenghang Sun, Benyin Zhang
Plants.2025; 14(14): 2135. CrossRef -
Bradyrhizobium tunisiense sp. nov., a novel rhizobial species isolated from Acacia saligna nodules
Jihed Hsouna, Houda Zouagui, Takwa Gritli, Houda Ilahi, Jia-Cheng Han, Muhammad Sulman, Walid Ellouze, Xiao Xia Zhang, Maroua Mansouri, Mustapha Missbah El Idrissi, Soufiane Alami, Pierre Emmanuel Courty, Daniel Wipf, Abdelkader Bekki, James T. Tambong, B
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Distribution of Iron Importers and Ecological Traits in Pseudomonas Species Highlights the Potential Role of Efe System in Plant‐Related Environments
Kenji Okumura, Kohei Ogura, Wataru Hashimoto
Environmental Microbiology.2025;[Epub] CrossRef - Genetic Characterization and Symbiotic Performance of Soybean Rhizobia Under Cold and Water-Deficient Conditions in Poland
Riku Watanabe, Maria Daniela Artigas Ramirez, Shin-ichiro Agake, Sonoko Dorothea Bellingrath-Kimura, Sylwia Lewandowska, Yuki Onishi, Yohei Nishikawa, Haruko Takeyama, Michiko Yasuda, Naoko Ohkama-Ohtsu
Plants.2025; 14(12): 1786. CrossRef - Fulvimonas Volatilium sp. nov., Isolated from the Volatile Organic Compounds Treatment System
Shaofeng Zhou, Yanjin Li, Tongchu Deng, Ling Zhang, Meiying Xu
Current Microbiology.2025;[Epub] CrossRef - Reclassification of Pseudomonas boreopolis Gray and Thornton 1928 (Approved Lists 1980) as Xanthomonas boreopolis comb. nov. and Pseudomonas carboxydohydrogena (ex Sanjieva and Zavarzin 1971) Meyer et al. 1980 as Afipia carboxydohydrogena comb. nov. based
Mehdi Fatahi-Bafghi
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Comprehensive genomic analysis of Sinorhizobium meliloti isolates associated with fenugreek (Trigonella foenum-graecum Linn.) from diverse agroclimatic regions of India
Mitesh Khairnar, Saleh S. Alhewairini, Swapnil Chandrakant Kajale, Vagish Dwibedi, Jayanthi Barasarathi, Andrea Mastinu, Riyaz Sayyed
Chemical and Biological Technologies in Agriculture.2025;[Epub] CrossRef -
Aureibaculum koreense sp. nov. and Aureibaculum conchae sp. nov., isolated from the marine molluscs
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-based classification of Paraniabella aurantiaca gen. nov., sp. nov., isolated from soil and taxonomic reclassification of five species within the genus Niabella
Yong-Seok Kim, Yerang Yang, Miryung Kim, Do-Hoon Lee, Chang-Jun Cha
Journal of Microbiology.2025; 63(10): e2505005. CrossRef - Ruegeria discodermiae sp. nov., Ruegeria jejuensis sp. nov., and Ruegeria hyattellae sp. nov., Isolated from Marine Sponges
Yea-Lin Moon, Kyung Hyun Kim, Ji-Yoon Shin, Jin-Sook Park
Current Microbiology.2025;[Epub] CrossRef - Unexplored diversity and potential functions of extra-chromosomal elements
Haoyu Liu, Jia Sun, JuanJuan Si, Yi Liao, Jiaqi Bai, Xia Li, Limin Wang, Kuojun Cai, Wei Ni, Ping Zhou, Shengwei Hu, Juliette Hayer
mSystems.2025;[Epub] CrossRef -
Microbulbifer discodermiae sp. nov. and Microbulbifer jejuensis sp. nov., isolated from marine sponges
Yea-Lin Moon, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - A Horizontally Transferred Alginate Metabolism Gene Cluster in the Human Gut Genus Bacteroides
Yuki Miyamoto, Natsuko Katsuhiro, Kenji Okumura, Ryuichi Takase, Daisuke Watanabe, Kohei Ogura, Wataru Hashimoto
Journal of Applied Glycoscience.2025; 72(4): n/a. CrossRef - Lactiplantibacillus koreensis sp. nov. and Lactiplantibacillus kimchii sp. nov., isolated from kimchi, a traditional Korean fermented food
Min Ji Lee, Jisu Lee, Sohee Nam, Mi-Ja Jung, Yeon Bee Kim, Yujin Kim, Jeong Ui Yun, Seong Woon Roh, Tae Woong Whon, Che Ok Jeon, Se Hee Lee
Journal of Microbiology.2025; 63(11): e2507007. CrossRef - Comparative genome analysis of the Sphaerotilus-Leptothrix group supports the unification of the genera Sphaerotilus and Leptothrix into a single emended genus Sphaerotilus
Dmitry D. Smolyakov, Alexey V. Beletsky, Tatyana S. Rudenko, Maria V. Gureeva, Nikolai V. Ravin, Margarita Y. Grabovich
Systematic and Applied Microbiology.2025; 48(6): 126666. CrossRef - Paraburkholderia suaedae sp. nov., a Potential Plant Growth-Promoting Bacterium Isolated from the Halophyte Suaeda japonica
Sunho Park, Hyunji Lee, Subin Yook, Chunghwan Baek, Jisu Kim, Seunghui Kwak, Taeho Na, Taegun Seo
Microorganisms.2025; 13(11): 2498. CrossRef - Acquisition of novel antibiotic resistance genes by the bacterial predator Bacteriovorax sp. As-1
Fathrinah Binti Kohadie, Young-Ung Heo, Wonsik Mun, Sumin Choi, Sinseong Park, Yoonhang Lee, Do-Hyung Kim, Robert J Mitchell
The ISME Journal.2025;[Epub] CrossRef - Four novel species of the genus Aquimarina isolated from marine sponges: Aquimarina callyspongiae sp. nov., Aquimarina mycalae sp. nov., Aquimarina discodermiae sp. nov., and Aquimarina penaris sp. nov
Yea-Lin Moon, Seung-Min Han, Kyung Hyun Kim, Jin-Sook Park
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Genomic characterisation and gene editing of Marinibacterium sp. CCB-SX1 as a new marine chassis for polyhydroxyalkanoate production
Sixu Gong, Noorizan Miswan, Nur Hanani Arif Shah, Siti Nor Syairah Anis, Amirul Al-Ashraf Abdullah, Nyok-Sean Lau
International Journal of Biological Macromolecules.2025; 334: 149133. CrossRef - Whole-genome sequencing of Nocardiopsis sp. B33, an alkali-halo-tolerant and moderately thermotolerant plant growth-promoting strain from Algerian Saharan soil: an in vitro and in silico study
Noureddine Bouras, Mónica Majo-Cuervo, Atika Meklat, Lorena Carro, Affaf Laassami, Esther Menéndez, Imen Nouioui
Biocatalysis and Agricultural Biotechnology.2025; 70: 103829. CrossRef - Phylogenomic insights into a psychrotolerant, plant growth-promoting strain of Pseudomonas marginalis isolated from Xinantécatl volcano
José Germán Serrano-Gamboa, José Tomás Tavarez-Arriaga, Mario L. Iza-Arteaga, Martín Romualdo Ide-Pérez, Irán Tapia-Vázquez, Jorge L. Folch-Mallol
Gene Reports.2025; 41: 102356. CrossRef - Comparative Genomics of DH5α-Inhibiting Escherichia coli Isolates from Feces of Healthy Individuals Reveals Common Co-Occurrence of Bacteriocin Genes with Virulence Factors and Antibiotic Resistance Genes
Shuan Er, Yichen Ding, Linda Wei Lin Tan, Yik Ying Teo, Niranjan Nagarajan, Henning Seedorf
Antibiotics.2025; 14(9): 860. CrossRef - Longitudinal gut microbiota tracking reveals the dynamics of horizontal gene transfer
Haoran Peng, Sergio Andreu-Sanchez, Angel J. Ruiz-Moreno, Asier Fernández-Pato, Jiafei Wu, Ranko Gacesa, Alexandra Zhernakova, Daoming Wang, Jingyuan Fu
Nature Communications.2025;[Epub] CrossRef -
Variovorax arabinosiphilus sp. nov., Variovorax flavidus sp. nov., Variovorax gracilis sp. nov., Variovorax brevis sp. nov., Variovorax jilinensis sp. nov., Variovorax davisae sp. nov., Variovorax saccharolyticus sp. nov. and Variovorax fucos
Yu-Hang Jiang, Ce-Ce Yin, Lei-Lei Yang, Yu-Hua Xin, Qing Liu, Jian Ye
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Rubrivirga aquatilis sp. nov. and Rubrivirga halophila sp. nov., isolated from Korean coastal surface seawater
Jisoo Han, Yeonjung Lim, Mirae Kim, Jang-Cheon Cho
Journal of Microbiology.2025; 63(8): e2504017. CrossRef -
Maribacter algae sp. nov., Maribacter spongiae sp. nov., Maribacter corallii sp. nov., Maribacter aquimarinus sp. nov. and Maribacter taeanensis sp. nov., isolated from marine habitats in the Republic of Korea
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Streptomyces shinuiensis sp. nov., a Salternamides-Producing Bacterium Isolated from Saltern Sediment
Yeonjung Lim, Ye-Eun Moon, Mirae Kim, Jayho Lee, Dong-Chan Oh, Jang-Cheon Cho
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef -
Vibrio sabulosilitoris sp. nov., a novel marine bacterium in the Agarivorans clade within the family Vibrionaceae, isolated from a sandy beach in Fukui, Japan
Yuka Machii, Karen Tsukiyama, Takafumi Kataoka, Ryuji Kondo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Bulleidia extructa PP_925: Genome Reduction, Minimalist Metabolism, and Evolutionary Insights into Firmicutes Diversification
Peter V. Evseev, Irina V. Podoprigora, Andrei V. Chaplin, Zurab S. Khabadze, Artem A. Malkov, Lyudmila I. Kafarskaia, Dmitriy A. Shagin, Yulia N. Urban, Olga Yu. Borisova, Boris A. Efimov
International Journal of Molecular Sciences.2025; 27(1): 448. CrossRef - The Isolation and Characterization of a Novel Psychrotolerant Cellulolytic Bacterium, Microbacterium sp. QXD-8T
Peng An, Changjialian Yang, Wei Li, Dahe Zhao, Hua Xiang
Microorganisms.2024; 12(2): 303. CrossRef - Isolation of highly copper-resistant bacteria from deep-sea hydrothermal fields and description of a novel species Marinobacter metalliresistant sp. nov
Tong Yu, Meng Qin, Zongze Shao, Yuemei Zhao, Xiang Zeng
Frontiers in Microbiology.2024;[Epub] CrossRef - Phenazines are involved in the antagonism of a novel subspecies of Pseudomonas chlororaphis strain S1Bt23 against Pythium ultimum
Sylvia I. Chi, Mercy Akuma, Renlin Xu, Véronique Plante, Mehri Hadinezhad, James T. Tambong
Scientific Reports.2024;[Epub] CrossRef - Isoptericola haloaureus sp. nov., a dimorphic actinobacterium isolated from mangrove sediments of southeast India, implicating biosaline agricultural significance through nitrogen fixation and salt tolerance genes
Munisamy Prathaban, Ragothaman Prathiviraj, Mythili Ravichandran, Sharmila Devi Natarajan, Murugesan Sobanaa, S. Hari Krishna Kumar, Varadharaju Chandrasekar, Joseph Selvin
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Azotosporobacter soli gen. nov., sp. nov., a novel nitrogen-fixing bacterium isolated from paddy soil
Cheng-Jie Xie, Ling Yao, Rong Tang, Shuang Han, Shang Yang, Hend Alwathnani, Christopher Rensing, Guo-Hong Liu, Shun-Gui Zhou
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Veillonella faecalis sp. nov., a propionic acid-producing bacterium isolated from the faeces of an infant
Haneol Yang, Hana Jo, Seung Hyun Kim, Chan-Seok Yun, Seung-Hwan Park, Doo-Sang Park
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Rhizobium hidalgonense and Rhizobium redzepovicii as faba bean (Vicia faba L.) microsymbionts in Mexican soils
Flor N. Rivera Ortuña, Joseph Guevara-Luna, Jun Yan, Eloisa Lopez Amezcua, Ivan Arroyo-Herrera, Yan Li, Maria Soledad Vásquez-Murrieta, Danae Rojas Arellano, En Tao Wang
Archives of Microbiology.2024;[Epub] CrossRef -
Chitiniphilus purpureus sp. nov., a novel chitin-degrading bacterium isolated from crawfish pond sediment
Kaiyang Li, Xiong Luo, Rongrong Fan, Zhuoran Ding, Shixue Zheng, Zhengjun Chen
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Augmenting bacterial similarity measures using a graph-based genome representation
Vivek Ramanan, Indra Neil Sarkar, Sergio Baranzini
mSystems.2024;[Epub] CrossRef - Flavobacterium rivulicola sp. nov., Isolated from a Freshwater Stream
Sumin Kim, Miri S. Park, Ilnam Kang, Jang-Cheon Cho
Current Microbiology.2024;[Epub] CrossRef - The genome of a new Halorubrum distributum strain ICIS4 isolated from the culture of a microalga Dunaliella salina
Е. А. Selivanova, А. S. Balkin, Yu. А. Khlopko, V. Ya. Kataev, А. О. Plotnikov
Microbiology.2024; 93(4): 444. CrossRef - Biological Control of Streptomyces sp. PR69 Against Phytophthora capsici and Its Growth-Promoting Effects on Plants
Perla Karina López-Reyes, Susana De la Torre-Zavala, María Mercedes Cortés-González, Luis Jesús Galán-Wong, Hamlet Avilés-Arnaut
Horticulturae.2024; 10(12): 1365. CrossRef - Pectobacterium punjabense Causing Blackleg and Soft Rot of Potato: The First Report in the Russian Federation
Anna A. Vasilyeva, Peter V. Evseev, Alexandr N. Ignatov, Fevzi S.-U. Dzhalilov
Plants.2024; 13(15): 2144. CrossRef - Taxonogenomic analysis of the Xanthomonas translucens complex leads to the descriptions of Xanthomonas cerealis sp. nov. and Xanthomonas graminis sp. nov.
James T. Tambong, Renlin Xu, Maria Constanza Fleitas, Randy Kutcher
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Parendozoicomonas callyspongiae sp. nov. Isolated from a Marine Sponge, Callyspongia elongate, and Reclassification of Sansalvadorimonas verongulae as Parendozoicomonas verongulae comb. nov.
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
Current Microbiology.2024;[Epub] CrossRef - Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. Within the OM60/NOR5 Clade, Isolated from Seawater, and Emended Description of the Genus Congregibacter
Hyeonsu Tak, Miri S. Park, Hyerim Cho, Yeonjung Lim, Jang-Cheon Cho
Journal of Microbiology.2024; 62(9): 739. CrossRef - Analysis of Whole-Genome facilitates rapid and precise identification of fungal species
Guihong Qi, Lijun Hao, Tianyi Xin, Yutong Gan, Qian Lou, Wenjie Xu, Jingyuan Song
Frontiers in Microbiology.2024;[Epub] CrossRef - Transformation of hydroxylated polychlorinated biphenyls by bacterial 2-hydroxybiphenyl 3-monooxygenase
Jachym Suman, Kamila Sredlova, Serena Fraraccio, Martina Jerabkova, Michal Strejcek, Hana Kabickova, Tomas Cajthaml, Ondrej Uhlik
Chemosphere.2024; 349: 140909. CrossRef -
Commensalibacter nepenthis sp. nov. and Commensalibacter oyaizuii sp. nov., from fluid in a Nepenthes pitcher cup and a butterfly (Junonia lemonias) in Thailand
Pattaraporn Yukphan, Piyanat Charoenyingcharoen, Supattra Muangham, Wuttichai Mhuantong, Yuzo Yamada
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Lapidilactobacillus salsurivasis sp. nov., Secundilactobacillus muriivasis sp. nov., and Streptococcus parasalivarius sp. nov., isolated from Traditional Chinese Pickle
Ting-Yu Wang, Chun Yan Li, Hao Wang, Chun Tao Gu
Current Microbiology.2024;[Epub] CrossRef - Comparative pangenome analysis of Enterococcus faecium and Enterococcus lactis provides new insights into the adaptive evolution by horizontal gene acquisitions
Dae Gyu Choi, Ju Hye Baek, Dong Min Han, Shehzad Abid Khan, Che Ok Jeon
BMC Genomics.2024;[Epub] CrossRef - Staphylococcus hsinchuensis sp. nov., Isolated from Soymilk
Yu-Ting Wang, Yu-Chun Lin, Yi-Huei Hsieh, Yu-Tzu Lin, Moriyuki Hamada, Chih-Chieh Chen, Jong-Shian Liou, Ai-Yun Lee, Wei-Ling Zhang, Yung-Tsung Chen, Chien-Hsun Huang
Pathogens.2024; 13(4): 343. CrossRef - Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Raúl Riesco, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Rhizobium aouanii sp. nov., efficient nodulating rhizobia isolated from Acacia saligna roots in Tunisia
Jihed Hsouna, Takwa Gritli, Houda Ilahi, Jia-Cheng Han, Walid Ellouze, Xiao Xia Zhang, Maroua Mansouri, Praveen Rahi, Mustapha Missbah El Idrissi, Mouad Lamrabet, Pierre Emmanuel Courty, Daniel Wipf, Abdelkader Bekki, James T. Tambong, Bacem Mnasri
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Paralimibaculum aggregatum gen. nov. sp. nov. and Biformimicrobium ophioploci gen. nov. sp. nov., two novel heterotrophs from brittle star Ophioplocus japonicus
Keisuke Kawano, Tatsuya Awano, Arata Yoshinaga, Junji Sugiyama, Shigeki Sawayama, Satoshi Nakagawa
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Characterization and Genomic Analysis of Affinirhizobium gouqiense sp. nov. Isolated from Seawater of Gouqi Island Located in the East China Sea and Reclassification of Rhizobium lemnae to the Genus Affinirhizobium as Affinirhizobium lemnae comb. nov.
Min He, Gen Chen, Ke-Jing Li, Xing-Xing Tang, Xiao-Xiao Liu, Chang-Bin Ren, Hou-Hong Liu, Hai Luo, Sanjit Chandra Debnath, Pin-Mei Wang, Hai-Xin Chen, Dao-Qiong Zheng
Current Microbiology.2024;[Epub] CrossRef -
Eubacterium album sp. nov., a butyrate-producing bacterium isolated from faeces of a healthy human
Feng-Lan Liu, Rashidin Abdugheni, Cong-Guo Ran, Nan Zhou, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Lentzea sokolovensis sp. nov., Lentzea kristufekii sp. nov. and Lentzea miocenica sp. nov., rare actinobacteria from Miocene lacustrine sediment of the Sokolov Coal Basin, Czech Republic
Ana Catalina Lara, Lucie Kotrbová, Moritz Keller, Imen Nouioui, Meina Neumann-Schaal, Yvonne Mast, Alica Chroňáková
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Rhodoferax potami sp. nov. and Rhodoferax mekongensis sp. nov., isolated from the Mekong River in Thailand
Supattra Kitikhun, Piyanat Charoenyingcharoen, Paopit Siriarchawatana, Somsak Likhitrattanapisal, Thanyakorn Nilsakha, Amonwan Chanpet, Sukanya Jeennor, Pattaraporn Yukphan, Supawadee Ingsriswang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Thalassotalea aquiviva sp. nov., and Thalassotalea maritima sp. nov., Isolated from Seawater of the Coast in South Korea
Jina Lee, Seung-Hui Song, Kira Moon, Nakyeong Lee, Sangdon Ryu, Hye Seon Song, Sung Moon Lee, Yun Ji Kim, Se Won Chun, Kyung-Min Choi, Aslan Hwanhwi Lee
Journal of Microbiology.2024; 62(12): 1099. CrossRef - Genome Sequencing Unveils Nomadic Traits of Lactiplantibacillus plantarum in Japanese Post-Fermented Tea
Kyoka Sato, Yuichiro Ikagawa, Ryo Niwa, Hiroki Nishioka, Masanori Horie, Hitoshi Iwahashi
Current Microbiology.2024;[Epub] CrossRef - Effects of Limosilactobacillus reuteri strains PTA-126787 and PTA-126788 on intestinal barrier integrity and immune homeostasis in an alcohol-induced leaky gut model
Dharanesh Gangaiah, Min Gu, Aline Zaparte, Olaf Will, Laurie C. Dolan, Anthony Goering, Jason Pillai, Shrinivasrao P. Mane, German Plata, Emily B. Helmes, David A. Welsh, Arvind Kumar Mahajan
Scientific Reports.2024;[Epub] CrossRef - Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Nancy O. Nou, Jonathan K. Covington, Dengxun Lai, Xavier Mayali, Cale O. Seymour, Juliet Johnston, Jian-Yu Jiao, Steffen Buessecker, Damon Mosier, Alise R. Muok, Nicole Torosian, Allison M. Cook, Ariane Briegel, Tanja Woyke, Emiley Eloe-Fadrosh, Nicole Sh
Nature Communications.2024;[Epub] CrossRef - Isolation of Sphingopyxis kveilinensis sp. nov., a Potential Antibiotic-Degrading Bacterium, from a Karst Wetland
Ying Chen, Jie Deng, Chengjian Yu
Current Microbiology.2024;[Epub] CrossRef - Transmission and Persistence of Infant Gut-Associated Bifidobacteria
Margaret A. Hilliard, David A. Sela
Microorganisms.2024; 12(5): 879. CrossRef - The Type Strain of Bifidobacterium indicum Scardovi and Trovatelli 1969 (Approved Lists 1980) is ATCC 25912, not DSM 20214, and Rejection to Reclassify Bifidobacterium coryneforme as Bifidobacterium indicum
Cheng-Shan Jiang, Chun Yan Li, Chun Tao Gu
Current Microbiology.2024;[Epub] CrossRef - Cultivation of deep-sea bacteria from the Northwest Pacific Ocean and characterization of Limnobacter profundi sp. nov., a phenol-degrading bacterium
Mirae Kim, Jaeho Song, Seung Yeol Shin, Kazuhiro Kogure, Ilnam Kang, Jang-Cheon Cho
Frontiers in Marine Science.2024;[Epub] CrossRef -
Faecalibacterium taiwanense sp. nov., isolated from human faeces
Jong-Shian Liou, Wei-Ling Zhang, Li-Wen Hsu, Chih-Chieh Chen, Yu-Ting Wang, Koji Mori, Kohei Hidaka, Moriyuki Hamada, Lina Huang, Koichi Watanabe, Chien-Hsun Huang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Mesorhizobium retamae sp. nov., a novel non-nodulating and non-nitrogen-fixing species isolated from the root nodules of Retama raetam sampled in Tunisia
Roukaya Ben Gaied, Imed Sbissi, Mohamed Tarhouni, Katharina Huber, Jacqueline Wolf, Meina Neumann-Schaal, Imen Nouioui, Faten Ghodhbane-Gtari, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genomic and phenotypic characterization of 26 novel marine bacterial strains with relevant biogeochemical roles and widespread presence across the global ocean
Xavier Rey-Velasco, Teresa Lucena, Ana Belda, Josep M. Gasol, Olga Sánchez, David R. Arahal, María J. Pujalte
Frontiers in Microbiology.2024;[Epub] CrossRef - Lacticaseibacillus jixiensis sp. nov., Isolated from Traditional Chinese Pickle
Si-Tong Song, Chun Yan Li, Chun Tao Gu
Current Microbiology.2024;[Epub] CrossRef -
Paracoccus spongiarum sp. nov., isolated from the marine sponge, Phakellia elegans
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Saccharopolyspora mangrovi sp. nov., a novel mangrove soil actinobacterium with distinct metabolic potential revealed by comparative genomic analysis
Yi-Ting Lu, Yi-Yi Wu, Ya-Nan Li, Wei-Yi Zheng, Wen-Zheng Liu
Archives of Microbiology.2024;[Epub] CrossRef - The Genome of a New Halorubrum distributum Strain ICIS4 Isolated from the Culture of a Microalga Dunaliella salina
E. A. Selivanova, A. S. Balkin, Yu. A. Khlopko, V. Ya. Kataev, A. O. Plotnikov
Microbiology.2024; 93(4): 482. CrossRef - Luteibacter sahnii sp. nov., A Novel Yellow-Colored Xanthomonadin Pigment Producing Probiotic Bacterium from Healthy Rice Seed Microbiome
Gagandeep Jaiswal, Rekha Rana, Praveen Kumar Nayak, Rekha Chouhan, Sumit G. Gandhi, Hitendra K. Patel, Prabhu B. Patil
Current Microbiology.2024;[Epub] CrossRef - Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria
Wouter B. Lenferink, Theo A. van Alen, Mike S. M. Jetten, Huub J. M. Op den Camp, Maartje A. H. J. van Kessel, Sebastian Lücker
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Analysis of Whole-Genome for Identification of Seven Penicillium Species with Significant Economic Value
Yuanhao Huang, Lianguo Fu, Yutong Gan, Guihong Qi, Lijun Hao, Tianyi Xin, Wenjie Xu, Jingyuan Song
International Journal of Molecular Sciences.2024; 25(15): 8172. CrossRef - Jatrophihabitans cynanchi sp. nov., isolated from rhizosphere soil of Cynanchum wilfordii
Min Kuk Suh, Ji-Sun Kim, Mi Kyung Eom, Han Sol Kim, Hyo Eun Do, Yong Kook Shin, Jung- Sook Lee
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Helicovermis profundi gen. nov., sp. nov., a novel mesophilic, asporogenous bacterium within the Clostridia isolated from a deep-sea hydrothermal vent chimney
Urara Miyazaki, Daiki Mizutani, Yurina Hashimoto, Akihiro Tame, Shigeki Sawayama, Junichi Miyazaki, Ken Takai, Satoshi Nakagawa
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Patterns of Change in Nucleotide Diversity Over Gene Length
Farhan Ali, Brian Golding
Genome Biology and Evolution.2024;[Epub] CrossRef - SeqCode facilitates naming of South African rhizobia left in limbo
Melandré van Lill, Stephanus N. Venter, Esther K. Muema, Marike Palmer, Wai Y. Chan, Chrizelle W. Beukes, Emma T. Steenkamp
Systematic and Applied Microbiology.2024; 47(2-3): 126504. CrossRef - Bifidobacterium apicola sp. nov., isolated from the gut of honeybee (Apis mellifera)
Ting-Yu Wang, Hao Wang, Chun Tao Gu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Detecting horizontal gene transfer among microbiota: an innovative pipeline for identifying co-shared genes within the mobilome through advanced comparative analysis
Jana Schwarzerova, Michal Zeman, Vladimir Babak, Katerina Jureckova, Marketa Nykrynova, Margaret Varga, Wolfram Weckwerth, Monika Dolejska, Valentine Provaznik, Ivan Rychlik, Darina Cejkova, Feng Gao, Johannes Wöstemeyer, Shay Tal, Alejandro Piña-Iturbe,
Microbiology Spectrum.2024;[Epub] CrossRef - Host genetic regulation of human gut microbial structural variation
Daria V. Zhernakova, Daoming Wang, Lei Liu, Sergio Andreu-Sánchez, Yue Zhang, Angel J. Ruiz-Moreno, Haoran Peng, Niels Plomp, Ángela Del Castillo-Izquierdo, Ranko Gacesa, Esteban A. Lopera-Maya, Godfrey S. Temba, Vesla I. Kullaya, Sander S. van Leeuwen, R
Nature.2024; 625(7996): 813. CrossRef - Uncovering the lignin-degrading potential of Serratia quinivorans AORB19: insights from genomic analyses and alkaline lignin degradation
Nadia Sufdar Ali, Subarna Thakur, Mengwei Ye, Fanny Monteil-Rivera, Youlian Pan, Wensheng Qin, Trent Chunzhong Yang
BMC Microbiology.2024;[Epub] CrossRef - Taxonomic note on Kocuria and Rothia: taxogenomic insights for addressing misidentifications and proposing new combinations and new subspecies
Faten Ghodhbane-Gtari, Mohamed Aziz Haj Nasr, Rafik Gatri, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Chengkuizengella axinellae sp. nov., a symbiotic bacterium isolated from a marine sponge of the genus Axinella
Yea-Lin Moon, Kyung Hyun Kim, Jin-Sook Park
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Adlercreutzia faecimuris sp. nov., producing propionate and acetate isolated from mouse feces
Min Kuk Suh, Jong- Sik Jin, Hyo Eun Do, Ji-Sun Kim, Mi Kyung Eom, Han Sol Kim, Jung- Sook Lee
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Xanthomonas chitinilytica sp. nov., a novel chitinolytic bacterium isolated from a microbial fermentation bed material
Xiaodong Liu, Xin Liu, Zhenshan Deng, Xiaolong He, Yingying Jiang
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Kribbella caucasensis sp. nov. from the Soil of the North Caucasus Mountains
A. N. Avtukh, E. V. Ariskina, L. M. Baryshnikova, N. V. Prisyazhnaya, L. V. Dorofeeva, L. I. Evtushenko
Microbiology.2024; 93(6): 730. CrossRef -
Peptostreptococcus equinus sp. nov., isolated from horse faeces
Hye Su Jung, Jeong Ui Yun, Mi-Ja Jung, Hye Seon Song, Yeon Bee Kim, Yujin Kim, Min Ji Lee, Jisu Lee, Che Ok Jeon, Seong Woon Roh, Tae Woong Whon, Joon-Gyu Kim, Se Hee Lee
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Aurantiacibacter poecillastricola sp. nov., Isolated from the Marine Sponge, Poecillastra wondoensis, and Reclassification of Erythrobacter alti as Aurantiacibacter alti comb. nov.
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
Journal of Microbiology and Biotechnology.2024;[Epub] CrossRef - Philodulcilactobacillus myokoensis gen. nov., sp. nov., a fructophilic, acidophilic, and agar-phobic lactic acid bacterium isolated from fermented vegetable extracts
Tomoaki Kouya, Yohei Ishiyama, Shota Ohashi, Ryota Kumakubo, Takeshi Yamazaki, Toshiki Otaki, Guadalupe Virginia Nevárez-Moorillón
PLOS ONE.2023; 18(6): e0286677. CrossRef - Comparative Genomic Analysis and BTEX Degradation Pathways of a Thermotolerant Cupriavidus cauae PHS1
Chandran Sathesh-Prabu, Jihoon Woo, Yuchan Kim, Suk Min Kim, Sun Bok Lee, Che Ok Jeon, Donghyuk Kim, Sung Kuk Lee
Journal of Microbiology and Biotechnology.2023; 33(7): 875. CrossRef -
Complete genome sequence of the emerging pathogen
Cysteiniphilum
spp. and comparative genomic analysis with genus
Francisella
: Insights into its genetic diversity and potential virulence traits
Changrui Qian, Mengxin Xu, Zeyu Huang, Miran Tan, Cheng Fu, Tieli Zhou, Jianming Cao, Cui Zhou
Virulence.2023;[Epub] CrossRef -
Psychroserpens ponticola sp. nov. and Marinomonas maritima sp. nov., isolated from seawater
Sylvia Kristyanto, Jaejoon Jung, Jeong Min Kim, Byeong Jun Choi, Dong Min Han, Sung Chul Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Atopomonas sediminilitoris sp. nov., isolated from beach sediment of Zhairuo Island, China
Kejing Li, Zhenbo Ye, Gen Chen, Kaiwen Zheng, Jun Yin, Sanjit Chandra Debnath, Cen Yan, Yi Hong, Zhen Guo, Pinmei Wang, Fabai Wu, Daoqiong Zheng
Antonie van Leeuwenhoek.2023; 116(2): 97. CrossRef - Chryseobacterium paludis sp. nov. and Chryseobacterium foetidum sp. nov. Isolated from the Aquatic Environment, South Korea
Miryung Kim, Yong-Seok Kim, Chang-Jun Cha
Journal of Microbiology.2023; 61(1): 37. CrossRef -
Paenibacillus soyae sp. nov., isolated from the rhizosphere of soya bean
Hui Zhao, Yue Su, Qihui Gu, Jumei Zhang, Xinqiang Xie, Qingping Wu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Geothrix oryzisoli sp. nov., a ferric iron-reducing bacterium isolated from paddy soil
Shuang Han, Rong Tang, Shang Yang, Cheng-Jie Xie, Manik Prabhu Narsing Rao, Christopher Rensing, Guo-Hong Liu, Shun-Gui Zhou
Antonie van Leeuwenhoek.2023; 116(5): 477. CrossRef - Description of Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp. nov., and Luteibacter aegosomatissinici sp. nov. isolated from the Intestines of Aegosoma sinicum Larvae
Hae-In Joe, Jee-Won Choi, June-Young Lee, Hojun Sung, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, Jin-Woo Bae
Journal of Microbiology.2023; 61(6): 603. CrossRef -
Hoeflea algicola sp. nov. and Hoeflea ulvae sp. nov., isolated from phycosphere of marine algae
Ju Hye Baek, Sylvia Kristyanto, Jeong Min Kim, Dong Min Han, Zhe-Xue Quan, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Muricauda myxillae sp. nov., isolated from a marine sponge (Myxilla rosacea), and reclassification of Flagellimonas hymeniacidonis as Muricauda symbiotica nom. nov.
Yea-Lin Moon, Kyung-Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description and Genomic Characteristics of Weissella fermenti sp. nov., Isolated from Kimchi
Jae Kyeong Lee, Ju Hye Baek, Dong Min Han, Se Hee Lee, So Young Kim, Che Ok Jeon
Journal of Microbiology and Biotechnology.2023; 33(11): 1448. CrossRef -
Dyadobacter pollutisoli sp. nov., isolated from plastic waste landfill soil
Kyeong Ryeol Kim, Jeong Min Kim, Jae Kyeong Lee, Dong Min Han, Lujiang Hao, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi
Dongwook Kim, Cameron L M Gilchrist, Jongsik Chun, Martin Steinegger
Nucleic Acids Research.2023; 51(D1): D777. CrossRef - Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria
Carlos J Pardo-De la Hoz, Nicolas Magain, Bryan Piatkowski, Luc Cornet, Manuela Dal Forno, Ignazio Carbone, Jolanta Miadlikowska, François Lutzoni, Claudia Lemus-Solis
Systematic Biology.2023; 72(3): 694. CrossRef - Zwartia vadi sp. nov., a Novel Species of the GKS98 Cluster Isolated from a Stream, and the Reclassification of ‘Achromobacter Panacis’ as Zwartia panacis comb. nov
Miri S. Park, Ilnam Kang, Jang-Cheon Cho
Microorganisms.2023; 11(9): 2150. CrossRef - Comparative genomics reveals environmental adaptability and antimicrobial activity of a novel Streptomyces isolated from soil under black Gobi rocks
Ying Wen, Binglin Zhang, Gaosen Zhang, Minghui Wu, Ximing Chen, Tuo Chen, Guangxiu Liu, Wei Zhang
Antonie van Leeuwenhoek.2023; 116(12): 1407. CrossRef - Phylogenomic Insights on the Xanthomonas translucens Complex, and Development of a TaqMan Real-Time Assay for Specific Detection of pv. translucens on Barley
James T. Tambong, Renlin Xu, Maria Constanza Fleitas, Lipu Wang, Keith Hubbard, Randy Kutcher
Phytopathology®.2023; 113(11): 2091. CrossRef - Microvirga terrae sp. nov., Isolated from Soil
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- Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
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Dongwook Kim , Sein Park , Jongsik Chun
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J. Microbiol. 2021;59(5):476-480. Published online April 28, 2021
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DOI: https://doi.org/10.1007/s12275-021-1154-0
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Abstract
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The average amino acid identity (AAI) is an index of pairwise
genomic relatedness, and multiple studies have proposed its
application in prokaryotic taxonomy and related disciplines.
AAI demonstrates better resolution in elucidating taxonomic
structure beyond the species rank when compared with average
nucleotide identity (ANI), which is a standard criterion
in species delineation. However, an efficient and easy-to-use
computational tool for AAI calculation in large-scale taxonomic
studies is not yet available. Here, we introduce a bioinformatic
pipeline, named EzAAI, which allows for rapid
and accurate AAI calculation in prokaryote sequences. The
EzAAI tool is based on the MMSeqs2 program and computes
AAI values almost identical to those generated by the standard
BLAST algorithm with significant improvements in the
speed of these evaluations. Our pipeline also provides a function
for hierarchical clustering to create dendrograms, which
is an essential part of any taxonomic study. EzAAI is available
for download as a standalone JAVA program at http://
leb.snu.ac.kr/ezaai.
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Citations
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.2026;[Epub] CrossRef - Genomic Insights into Bacterioruberin and Halorhodopsin Biosynthetic Genes in 12 Halophilic Archaea Isolated from Korean Solar Salterns
Dongseok Lee, Chi Young Hwang, Eui-Sang Cho, Young-Hyun You, Myung-Ji Seo
Journal of Microbiology and Biotechnology.2026;[Epub] CrossRef -
Occallatibacter bavaricus sp. nov., a new representative of the Acidobacteriota isolated from fen soils, reclassification of Terracidiphilus gabretensis as Occallatibacter gabretensis comb. nov. and emended description of the genus Occallatib
Katharina J. Huber, János Papendorf, Carolin Pilke, Petra Büsing, Boyke Bunk, Cathrin Spröer, Sarah Kirstein, Jacqueline Wolf, Meina Neumann-Schaal, Manfred Rohde, Michael Pester
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Sequencing of the invasive E. coli strain BEN2908 isolated from poultry: A comparative investigation of genomic regions shared with intestinal and extraintestinal model E. coli strains
Tobias Weber Martins, Angélina Trotereau, Simone Lahnig-Jacques, Maxime Branger, Sébastien Houle, Charles M. Dozois, Daniel Brisotto Pavanelo, Fabiana Horn, Catherine Schouler, Feng Gao
PLOS One.2026; 21(2): e0342894. CrossRef - Description and Comparative Genomic Analysis of Salipiger Bruguierae sp. nov., a Novel Member of the Family Roseobacteraceae Isolated from Mangrove Sediments
Qiangcai He, Shaoshuai Tang, Zhen Gan, Dakun Chen, Huimin Fan, Yishan Lu, Meng Long
Current Microbiology.2026;[Epub] CrossRef -
Deinococcus pantiae sp. nov., a UV-resistant bacterium isolated from a lake in Schirmacher Oasis, Antarctica
Namrata Jiya, Wormirin Khudai, Bhavuk Gupta, Dev Kant Sindhu, Vibhaw Shrivastava, Sonia Thite, Prachi Karodi, Venkata Ramana Vemuluri, Avinash Sharma
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Potential survival strategies of novel comammox and nitrite-oxidizing Nitrospira synthesizing osmoprotectants in a wastewater microbiome treating high-ammonia brackish landfill leachate
Shohei Yasuda, Alejandro Palomo, Barth F. Smets, Akihiko Terada
Microbiome.2026;[Epub] CrossRef - Streptomyces tyrfis sp. nov., an actinobacterium isolated from Thai peat swamp forest soil and its promising secondary metabolites
Penkawee Kottip, Khanungkan Klanbut, Poowadon Fukasem, Pattama Pittayakhajonwut, Chakapong Intaraudom, Nantiya Bunbamrung, Chanwit Suriyachadkun, Montri Yasawong, Ya-Wen He, Somboon Tanasupawat, Sarin Tadtong, Chitti Thawai
Scientific Reports.2026;[Epub] CrossRef - Apolloniradiicaulis salifontis gen. nov., sp. nov., a New Prosthecate Aerobic Anoxygenic Phototroph Isolated from Lake Winnipegosis Region Salt Springs
Katia Messner, Caleb Pereira, John A. Kyndt, Marike Palmer, Vladimir Yurkov
Microorganisms.2026; 14(3): 525. CrossRef - Halotolerantifilum yawarlongkerapense gen. nov., sp. nov., a novel halotolerant and thermotolerant bacterium isolated from Lake Warden, and proposal of Guggenheimellaceae fam. nov. in the order Peptostreptococcales
Luke A. Fisher, Saloni R. Dangre, Jordan M. McKaig, Paul A. Lawson, Bryce G. Inman, Arthur Odenheimer, Taylor A. Plattner, Enrica Quartini, Christopher E. Carr, Peter T. Doran, Jeff S. Bowman, Britney E. Schmidt, Douglas H. Bartlett
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Halomonas terrestris sp. nov., a Novel Facultatively Anaerobic Bacterium, Isolated from a Terrestrial Mud Volcano
M. A. Khomyakova, A. Y. Merkel, A. I. Slobodkin
Microbiology.2026; 95(1): 17. CrossRef - Evolutionary dynamics of type VI secretion systems in fruit fly-associated Enterobacter
Naima Bel Mokhtar, Panagiota Stathopoulou, Elias Asimakis, Antonios Augustinos, Julieta Salgueiro, Malini Alleck, Preeaduth Sookar, Óscar Dembilio, Diego F. Segura, George Tsiamis
Frontiers in Microbiology.2026;[Epub] CrossRef -
Complete genome sequence of
Virgibacillus
sp. KFRI-KCUT25010 isolated from a fermented hairtail (
Trichiurus lepturus
) sauce
Myunglip Lee, Yukyoung Park, Sunghun Yi, Zhenjiang Zech Xu
Microbiology Resource Announcements.2026;[Epub] CrossRef -
Arboribacterium acericorticis gen. nov., sp. nov., an under-represented oligotrophic bacterium of the phylum Abditibacteriota isolated from the bark of Acer palmatum
Kazuki Kobayashi, Masato Takahashi, Nobutada Kimura, Hideki Aoyagi
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Genomic insights into adaptation and microevolution of two novel non-AOA Nitrososphaeria, Acidarchaeum fankouense and Thermosulfuris yongpingense, in acid mine drainage ecosystems
Licao Chang, Xikai Su, Wenzhe Hu, Yun Fang, Jun Liu, Jintian Li, Linan Huang, Wensheng Shu
Systematic and Applied Microbiology.2026; 49(3): 126711. CrossRef -
Draft genome of clinical isolate of
bla
OXA-395
and
bla
PAO
-producing
Pseudomonas aeruginosa
strain NeRAM02 isolated from urine in Niger
Abdourahamane Yacouba, Oumou Hamidou, Ahmed Olowo-Okere, Abdoulaye Ousmane, Massir Issoufou-Noma, Bassirou Abdou-Natali, Ounoussa Tapha, Mahamadou Doutchi, Saidou Mamadou, Catherine Putonti
Microbiology Resource Announcements.2026;[Epub] CrossRef - Acidaminococcus nyctereutis sp. nov., a bacterium isolated from the gut of a raccoon dog (Nyctereutes procyonoides)
Shuo Li, Xue Zhang, Jia-Xin Zhao, Yun-Bo Miao, Hai-Hua Zhang, Yu-Mei Dai
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Genomics-based insights into the expanded diversity and adaptation strategies of hadal trench anammox bacteria
Yao Xiao, Rui Zhao, Weishu Zhao, Pudi Wang, Xiang Xiao, Xiaotong Peng, Hongmei Jing
ISME Communications.2026;[Epub] CrossRef - Genome Mining and Functional Characterization of Agarases from a Novel Vibrio Species
Marc Jeremie D. Punzalan, Neil Andrew D. Bascos, Arturo O. Lluisma
Marine Biotechnology.2026;[Epub] CrossRef - Description and genomic insights of Niallia laureatilytica sp. nov., isolated from coastal ecosystem
Neetha Joseph, Datta Madamwar, Mansi Gangtire, Namrata Jiya, Vilas Patel, Amaraja Joshi, Prachi Karodi, Avinash Sharma
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - An updated outlook at the planctomycetal genus Singulisphaera: New members, genomes, and functional roles
Svetlana N. Dedysh, Anastasia A. Ivanova, Irina S. Kulichevskaya, Daniil G. Naumoff, Natalia E. Suzina, Alexey V. Beletsky, Andrey L. Rakitin, Andrey V. Mardanov, Nikolai V. Ravin
Systematic and Applied Microbiology.2026; 49(3): 126713. CrossRef - Genomic determinants of antifungal activity of Streptomyces melanosporofaciens STM-2 revealed by genome mining, comparative genomics and evolutionary analysis
Muhammed Opoku Gyamfi, Ming-Jen Cheng, Jyh-Yih Leu, Min Tseng, Joshua Addo, Ai-Ling Hour, Wei-Chung Cheng
Frontiers in Microbiology.2026;[Epub] CrossRef - Herbiconiux dendrobii sp. nov., a Novel Bacterium Isolated from Dendrobium devonianum Sawdust Substrate
Hao Liang, Fang Zhao, Hong-Bo Zha, Zhang-Gui Ding, Le-Le Li, Jiang-Yuan Zhao, Zhi-Ran Zhao, Min Zheng, Jian-Sheng Cheng, Hui-Cheng Deng, Shu-Kun Tang, Ming-Gang Li
Current Microbiology.2026;[Epub] CrossRef - Genomic Insights into the Polysaccharide-Degrading Potential of Rhizosphere-Associated Niallia sp. M35 Isolated from Saline Soils in the Aydarkul Lake Region
A. A. Umruzokov, K. V. Kondrasheva, K. D. Davranov, S. N. Gavrilov, A. G. Elcheninov, V. La Cono, L. Marturano, G. La Spada, M. M. Yakimov, E. Messina
Microbiology.2026; 95(2): 232. CrossRef - A human-associated Spiroplasma ixodetis lineage responsible for infantile cataracts and adult febrile illness
Marie Buysse, Matthew J. Ballinger, Marjorie Bruley, Julien Amoros, Justine Grillet, Navid Farassat, Annerose Serr, Wolf Alexander Lagrèze, Christine Wennerås, Anna Grankvist, Thomas Schön, Jonas Berglund, Lesley Bell-Sakyi, Hein Sprong, Olivier Duron
iScience.2026; 29(4): 115233. CrossRef - Pampinifervens navoyensis sp. nov., an Extremely Thermophilic Facultatively Anaerobic Chemolithoautotrophic Bacterium from a Hot Spring at the Navoi Region (Uzbekistan)
T. G. Sokolova, A. Y. Merkel, A. A. Novikov, K. D. Davranov, N. A. Chernyh
Microbiology.2026; 95(2): 208. CrossRef - Pedobacter terrestris sp. nov. and Pedobacter paludisoli sp. nov., Isolated from Wetland Soil
Jae Kyeong Lee, Byeong Jun Choi, Hülya Bayburt, Jeong Min Kim, Che Ok Jeon
Current Microbiology.2026;[Epub] CrossRef - A genomic atlas of gut clostridia: phylogeny, butyrate, and propionate production
Laura Sola, Francesco Candeliere, Enrico Busi, Stefano Raimondi, Alberto Amaretti, Maddalena Rossi
Frontiers in Microbiology.2026;[Epub] CrossRef - Genome-based reclassification of Chromohalobacter japonicus Sánchez-Porro et al. 2007 as a later heterotypic synonym of Chromohalobacter beijerinckii Peçonek et al. 2006
Preeti Yadav, Pooja, Abhilash Kumar, Princy Hira, Gauri Garg, Charu Dogra Rawat, Rup Lal, Utkarsh Sood
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Microbacterium songi sp. nov., Microbacterium hanjuni sp. nov. and Microbacterium shimangi sp. nov., three novel salt-tolerant bacteria isolated from plateau voles (Neodon fuscus)
Danna Pu, Jiali Chen, Ji Pu, Lin Ye, Hao Zhou, Xuelian Luo, Qian Ling, Teng Qi, Jianfeng Ba, Jing Yang, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Pan-genome guided identification and functional characterisation of three putative bacteriocin variants from Brevibacillus laterosporus
Ming Wu, Fushuang Duan, Shuang Chen, Yuhang Nie, Zhanpeng Wang, Ying Yang, Xuepeng Cai, Jie Li, Zhongmei Ma, Qingling Meng, Jun Qiao
World Journal of Microbiology and Biotechnology.2026;[Epub] CrossRef - Novel Methanosarcinaceae species Methanohalophilus methylutens sp. nov., Methanolobus methylotrophicus sp. nov., and Methanococcoides guerreronegronense sp. nov. from Guerrero Negro hypersaline microbial mats in accordance with the SeqCode
Patricia J. Ramírez-Arenas, Alejandro López-Cortés, Miguel A. Martínez-Mercado
Systematic and Applied Microbiology.2026; 49(3): 126716. CrossRef - Hot life in Antarctica: a novel metabolically versatile Pyrodictiaceae genus thriving at a volcanic–cryosphere–marine interface
Ana Carolina de Araújo Butarelli, Francielli Vilela Peres, Vivian Helena Pellizari, Amanda Gonçalves Bendia
ISME Communications.2026;[Epub] CrossRef - Paramicrobacterium salitolerans sp. nov. isolated from the agricultural soil and Microbacterium fluminis sp. nov. isolated from the Han River, South Korea
Gracia Pradnya Lolita, Do-Hoon Lee, Yong-Seok Kim, Chang-Jun Cha
Journal of Microbiology.2026; 64(4): e2512014. CrossRef - A comprehensive genome-centred taxonomy for agrobacteria and rhizobia in the Bartonellaceae and Rhizobiaceae families
Melandré van Lill, Stephanus N. Venter, Marike Palmer, Chrizelle W. Beukes, Emma T. Steenkamp
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey
Aurora Xolalpa-Aroche, Haydeé Contreras-Peruyero, Enrique J Delgado-Suárez, David I Hernández-Mena, Wilson I Moguel-Chin, Jose F Rivero-Cruz, Rodrigo A Velarde, Elizabeth Ortiz-Vázquez, Blanca E Rivero-Cruz, Jose Abel Lovaco-Flores, Lorena Rodríguez Orduñ
ISME Communications.2026;[Epub] CrossRef - Cupriavidus smyrnaeus sp. nov., Isolated from Soil Litter Near an Arum sp.
Nurettin Sahin, Akio Tani
Current Microbiology.2026;[Epub] CrossRef - Three novel bacterial species isolated from plasma-treated soil: Hymenobacter plasmatis sp. nov., Flavitalea plasmicola sp. nov. and Mucilaginibacter tolerans sp. nov.
Seona Park, M. K. Kim, S. Srinivasan
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - A Novel Freshwater Anammox Species of Candidatus Loosdrechtia Thriving Under Dual Salinity and Sulfate Stresses
Wei Li, Zhiyao Wang, Han Fu, Yan-Rong Ma, Yong Gu, Jin-Long Zhuang, Yu-Xiang Zhao, Yong-Di Liu, Qiang Yang, James P. Shapleigh, Ren-Cun Jin, Jianhua Guo, Boran Kartal, Bruce E. Rittmann
Environmental Science & Technology.2026; 60(23): 16629. CrossRef - Microbial community synergy drives metal-dependent anaerobic methane oxidation under simulated deep-sea high-pressure conditions
Cun Li, Jing-Chun Feng, Xuanyu Tao, Yingli Zhou, Xiao Chen, Song Zhong, Jianzhen Liang, Si Zhang
ENGINEERING Environment.2026;[Epub] CrossRef - Proposal of Edaphobacterium genomatis gen. nov., sp. nov. within the family Casimicrobiaceae from metagenome-assembled genomes in accordance with the SeqCode
Luyao Xia, Luotian Lu, Manchun Liu, Jianyu Jiao, Lan Liu, Liqiang Meng, Yalong Liu, Wenjun Li, Caiyu Lu, Bin Ma
Systematic and Applied Microbiology.2026; 49(4): 126735. CrossRef - Phylogenomic Characterization of Hydrogenophaga sedimenti sp. nov. and Larkinella fluvii sp. nov. Isolated from Riverbed Soil
Sunho Park, Hyunji Lee, Subin Yook, Chunghwan Baek, Jisu Kim, Seunghui Kwak, Taegun Seo
Current Microbiology.2026;[Epub] CrossRef -
Complete genome sequences of metal-oxidizing bacteria
Leptothrix mechoopdaensis
BB-3 and BB-4
Emily J. Fleming, Abigail McIntyre, Gracee K. Tothero, Joyce A. Zimmer, Jessica L. Keffer, Lydia N. Pierce, Kathleen R. Beilsmith, Rosemarie Wilton, Clara S. Chan, Karthik Anantharaman
Microbiology Resource Announcements.2026;[Epub] CrossRef - Gelidimonas denitrificans gen. nov., sp. nov., and Gelidimonas diazotrophica sp. nov. psychrophilic bacteria involved in the nitrogen cycle in tundra soils of South Spitsbergen
Jakub Grzesiak, Julia Brzykcy, Peter Young, Elvira Krakowska, Robert Stasiuk, Kamil Krakowski, Przemysław Decewicz, Alina Kiedryńska, Renata Matlakowska, Dariusz Bartosik
Systematic and Applied Microbiology.2026; 49(4): 126730. CrossRef - Using the SeqCode to validate the names of reclassified lineages of rhizobia and agrobacteria
Melandré van Lill, Emma T. Steenkamp, Marike Palmer, Chrizelle W. Beukes, Stephanus N. Venter
Systematic and Applied Microbiology.2026; 49(4): 126720. CrossRef - Detection and genetic characterization of Tembusu virus and other flaviviruses from mosquitoes in Lao PDR
Chittaphone Vanhnollat, Somsanith Chonephetsarath, Somphavanh Somlor, Veaky Vungkyly, Tiger Soulaphy, Sopha Vongsanga, Irina V. Etobayeva, Thomas Bigot, Gary Wong, Andrew G. Letizia, Paul T. Brey, Philippe Buchy, Khamsing Vongphayloth, Pierre Roques
PLOS One.2026; 21(6): e0351023. CrossRef - Phylogenomic and phenotypic investigations of Terrisphaera buseokensis gen. nov., sp. nov., a verrucomicrobium isolated from riverside soil
Jaewoo Yoon, Seong-Ryong Lee, Sanghwa Park
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Aliikangiella litoralis sp. nov. and Aliikangiella aequoris sp. nov., isolated from coastal seawaters of the Yellow Sea
Seungyeop Oh, Yeonjung Lim, Meora Rajeev, Jang-Cheon Cho
Journal of Microbiology.2026; 64(5): e2602008. CrossRef - Phylogenomic and metabolic insights into iron reduction metabolism in the genus Deferribacter belonging to the order Deferribacterales
Eva Pouder, Karine Alain, Sophie Mieszkin
Microbial Genomics
.2026;[Epub] CrossRef - Taxonomic description of a novel genus, Parajatrophihabitans gen. nov., in the family Jatrophihabitantaceae
Imen Nouioui, Sarah Kirstein, Gabriele Pötter, Marlen Jando, Juan Pablo Gomez Escribano, Meina Neumann-Schaal, Mathias Müsken, Cathrin Spröer, Boyke Bunk, Yvonne Mast
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Whole genome-based reclassification of the genus Metabacillus: Proposal for five novel genera, Chryseobacillus gen. nov., Cohnibacillus gen. nov., Salimetabacillus gen. nov., Pantoeobacillus gen. nov., and Lutimetabacillus gen. nov. and the description of
Daniel Candia-Herrera, Matías Guerra, Jorge Carrasco-Fernández, Carolina Campos-Quiroz, Marina Garcia-Gomez, José M. Igual, Lorena Carro, Jean Franco Castro
Systematic and Applied Microbiology.2026; 49(4): 126734. CrossRef - A giant virus in a small lake: characterization of a new tropical algal virus expands the geographical and genetic diversity of the Brazilian virosphere
Clécio Alonso da Costa Filho, Isadora Luiza de Jesus Canto, Bruna Barbosa Fagundes Botelho, Lethícia Ribeiro Henriques, João Victor Rodrigues Pessoa Carvalho, Ellen Gonçalves de Oliveira, Sara Arêdes da Cunha Souza, Júlia Winkler Souza, Mauricio Teixeira
Journal of Virology.2026;[Epub] CrossRef - Emended description of the genus Rhizobacter and reclassification of Ideonella sakaiensis as Pseudideonella sakaiensis gen. nov., comb. nov.
Huibin Lu, Li Chen
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Three Mycobacterium avium genotypes classified by 1.4-Mb genomic inversion and single-nucleotide variations are tightly linked to disease progression
Kentaro Tanaka, Yuuki Bamba, Nobumasa Aoki, Ikumi Yamagishi, Kenjiro Shima, Hideyuki Ogata, Satoshi Shibata, Yasuyoshi Ohshima, Satoshi Watanabe, Hiroshi Moro, Toshiyuki Koya, Mitsuhiro Yamada, Hisatoshi Sugiura, Akira Watanabe, Toshiaki Kikuchi
International Journal of Infectious Diseases.2026; 169: 108816. CrossRef - TaxaScope: a container-native, visualization-centric workstation for genome-based bacterial taxonomy
Yuxin Peng, Yue Jiang, Yong Jae Lee, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2026;[Epub] CrossRef - Metagenome-Assembled Genomes Support the Proposal of Candidatus Flavobacterium genomatis from the Northeast Black Soil Ecosystem
Xiaoyue Zhang, Caiyu Lu, Luotian Lu, Liqiang Meng, Yalong Liu, Bin Ma
Microorganisms.2026; 14(6): 1292. CrossRef - Enhanced suppression of Pseudomonas coronafaciens pv. garcae, the etiological agent of coffee plant bacterial halo blight, by a four-phage cocktail in in-vitro and ex-planta studies: biological and kinetic profiling
Fernanda C. Moreli, Lucas M.R. Rodrigues, Suzete A.L. Destefano, Marta M.D.C. Vila, Carla Pereira, Paul Hyman, Victor M. Balcão
Bacteriophage.2026; 1: 100005. CrossRef - Think pink 2.0 - Description of Roseobacter cerffii sp. nov., isolated from the chromerid alga Vitrella brassicaformis, and reclassification of Sulfitobacter sabulilitoris as Billmartinia sabulilitoris, gen. nov., comb. nov.
Jörn Petersen, Victoria Ringel, Orsola Päuker, Anja Frühling, Manfred Rohde, Michael Jarek, Cathrin Spröer, Boyke Bunk, Katharina Huber-Fischer, Silke Pradella, Heike M. Freese, Julia Koblitz, Meina Neumann-Schaal, Henner Brinkmann
Systematic and Applied Microbiology.2026; 49(4): 126731. CrossRef - Parasediminibacterium schistidii sp. nov., a novel member of the family Chitinophagaceae isolated from a glacier moss ball in the Canadian High Arctic
Shu-Kuan Wong, Yu Nakajima, Hiroshi Kanda, Vincent Maire, Masaki Uchida
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Isolation and Characterization of Pseudooceanicola aestuariicola sp. nov., from Tidal-Flat Sediments
Ayesha Rehman, Shahzadi Raheela Anum, Naureen Khalid, Keun-Hyeok Yang, Suk Chan Lee, Sathiyaraj Srivansan, Sang Seob Lee
Current Microbiology.2026;[Epub] CrossRef -
Methanococcoides mangrovi sp. nov. and Methanococcus mangrovi sp. nov., two novel methanogens isolated from mangrove sediments
Jinjie Zhou, Huidan Tan, Cui-Jing Zhang, Meng Li
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Four novel Pseudoalteromonas species isolated from seawater: Pseudoalteromonas mucoides sp. nov., Pseudoalteromonas aquimarina sp. nov., Pseudoalteromonas maris sp. nov. and Pseudoalteromonas thalassia sp. nov.
Inhyup Kim, Sunho Park, Chunghwan Baek, Seunghui Kwak, Haejin Woo, Hyunji Lee, Subin Yook, Jisu Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Phylogenomic and genome-relatedness analyses resolve genus and family boundaries within the family Verrucomicrobiaceae
Hana Dali, Imed Sbissi, Rihab Hamra, Tesnim Bouzidi, Haifa ElMay, Faten Ghodhbane-Gtari, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Mycobacterium toneyamaense sp. nov., a novel rapidly growing mycobacterium isolated from human patients
Takeshi Komine, Makoto Nakaya, Nagatoshi Fujiwara, Kiyoharu Fukushima, Yuki Matsumoto, Hiroshi Kida, Manabu Ato, Satoshi Mitarai, Hanako Fukano
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Leucogemmata humicola gen. nov., sp. nov., an oligotrophic bacterium of the under-represented phylum Gemmatimonadota isolated from soil
Rikuta Suzuki, Yumi Shimomura, Tomoki Iwashita, Xiang-Ying Meng, Kazuki Mori, Akiko Enomoto, Setsu Kato, Yutaka Nakashimada, Kosuke Tashiro, Hideyuki Tamaki, Yoshiteru Aoi
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Neffella xylocopae gen. nov., sp. nov., a novel host-specific gut symbiont of Xylocopa carpenter bees in the family Orbaceae
Alan Emanuel Silva Cerqueira, Jo-anne C. Holley, Sarah C. Hatcher, Pedro Marcus Pereira Vidigal, Laila E. Phillips, Nancy A. Moran
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Culture-enriched sequencing reveals river confluence sediments as high-risk reservoirs of viable multidrug-resistant pathogens
Yi Li, Huijuan Huang, Bi Luo, Rong Wang, Zhiwei Zhu
Journal of Hazardous Materials.2026; 514: 142756. CrossRef - Isolation and characterization of Pseudarthrobacter cremeus sp. nov. and Ideonella flava sp. nov. from mountain soil
Chunghwan Baek, Sunho Park, Hyunji Lee, Subin Yook, Seunghui Kwak, Jisu Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Distinguishing
Leptothrix
and
Sphaerotilus
genera by an integrated genomic-phenotypic analysis supported by new
Leptothrix
genomes
Gracee K. Tothero, Jessica L. Keffer, David Emerson, Emily J. Fleming, Clara S. Chan, Ryan J. Newton
mSystems.2026;[Epub] CrossRef - A Modern Framework for Identifying Novel Environmental Legionella Species
Karla Vasari, Maja Kovačević, Niko Kasalo, Snježana Kazazić, Ivan Mijakovic, Göran Klobučar, Damjan Franjevic, Josip Skejo, Tomislav Domazet-Lošo, Brian G. Shelton, Marina Santic, Roberta Sauerborn Klobucar
Life.2026; 16(7): 1187. CrossRef -
Promicromonospora noduliphila sp. nov., a nodulation-enhancing actinobacterium isolated from the root nodules of grey-hair acacia planted in the Khurais desert, Saudi Arabia
Khulud Alghannam, Grégoire Michoud, Alan Barozzi, Sarah Al Romaih, Rawan Alhazmi, Bob Vernooij, Kennedy Odokonyero, Adair Gallo, Himanshu Mishra, Daniele Daffonchio, Ramona Marasco
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Shotgun metagenomics uncovers novel features of the cyanobacterial community in a large, shallow lake in Central Italy
Nico Salmaso, Leonardo Cerasino, Margherita Di Brizio, Massimo Pindo, Adriano Boscaini
Hydrobiologia.2026;[Epub] CrossRef - Resolving the evolutionary duality of marine symbionts: redefining the genus Endozoicomonas and proposing Neoendozoicomonas gen. nov
Flúvio Modolon, Alessandro N Garritano, Philip Hugenholtz, Christian R Voolstra, Tina Keller-Costa, Rodrigo Costa, Torsten Thomas, Raquel S Peixoto
ISME Communications.2026;[Epub] CrossRef - Phylogenomic analysis of Paenibacillus larvae isolates from Slovakia predicts regional genomic clustering
Anna Kopcakova, Jana Kiskova, Silvia Ivorova, M. Pilar Garcillán-Barcia, Peter Pristas
Frontiers in Veterinary Science.2026;[Epub] CrossRef - Comparative Genomic Insights into Genomic GC Variation in the Genus Kordiimonas
Ruo-Ying Zhuo, Jia-Xi Li, Yue-Ran Zhu, Yu-Chen Deng, Xiang-Yang Yu, Cong Sun, Lin Xu
Diversity.2026; 18(7): 421. CrossRef -
Marinomonas algae sp. nov. and Marinomonas phycocola sp. nov., two novel bacteria isolated from marine algae
Yea-Lin Moon, Kyoungdong You, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Characterization of Marinibium conchae gen. nov. sp. nov., a novel psychrotolerant mesophilic bacterium from mussels
Young-Mi Lee, Jaincy N. Jayan, Ha-Jung Moon, Suk-Chan Lee, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Electricity generation and shifts in methanogenesis mediated by an oil-field-derived electroactive bacterium in legacy tar pit sediments
Miho Watanabe, Chihiro Takayama, Nanaho Yoshida, Kosuke Watanabe, Kei Takahashi, Fumiaki Takakai, Kunihiro Okano, Nobuo Kaku, Naoyuki Miyata
Cleaner Energy Systems.2026; 14: 100261. CrossRef - Janthinobacterium foliorum sp. nov., isolated from the decayed leaves of wild alpine rhododendron
Hui-Bin Lu, Ling-Yang Kong, Li Chen, Guang-Jie Chen
Systematic and Applied Microbiology.2026; 49(4): 126736. CrossRef - Caldifarcimen microaerophilum gen. nov., sp. nov., a facultatively anaerobic, thermophilic bacterium of a novel bacterial phylum, Caldifarciminota phyl. nov., formerly called candidate phylum WOR-3, description of Caldifarciminaceae fam. nov., Caldifarcim
Koji Mori, Kohei Hidaka, Satoshi Tamazawa, Akira Hosoyama, Hideyuki Tamaki, Takeshi Kakegawa, Satoshi Hanada
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - The van Niel international prize for studies in bacterial systematics, awarded in 2026 to Jon Jongsik Chun
Iain C. Sutcliffe, Edward R. B. Moore, Aharon Oren
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Eximiradius proteiniborus gen. nov., sp. nov., the first cultivated representative of the “Candidatus Kapaibacteriia” (lineage OPB56) and a proposal of Eximiradiaceae fam. nov., Eximiradiales ord. nov., Eximiradiia class. nov. within the phylum Bacteroido
Olga A. Podosokorskaya, Alexander G. Elcheninov, Alexandra A. Klyukina, Evgenii N. Frolov, Alexander Y. Merkel
Systematic and Applied Microbiology.2026; 49(5): 126753. CrossRef - Genome-based analysis of the taxonomic structure of the genus Stenotrophomonas
Valeriya V. Shapovalova, Elvira R. Shajdullina, G.A. Shipulin, Mikhail V. Edelstein
Clinical Microbiology and Antimicrobial Chemotherapy.2026; 28(1): 4. CrossRef - Comparative genomic analyses provide new insights into phylogenetic and functional diversification in genus Fenollaria
Shaojing Wang, Lijuan Kang, Mei Li, Xiaodong Zhou, Bowen Li, Fei Wang, Jinhuan Meng, Changying Li, Kuo Yang
Frontiers in Microbiology.2026;[Epub] CrossRef - Sphingomonas incarnata sp. nov., an endophytic bacterium with bioactive potential isolated from passionfruit leaves
Luis Gabriel Cueva-Yesquén, Kariny Marley de Castro Martins, Kelly Johanna Hidalgo-Martinez, Adilson Sartoratto, Adriana da Silva Santos de Oliveira, Itamar Soares de Melo, Fabiana Fantinatti-Garboggini
BMC Microbiology.2026;[Epub] CrossRef - Non-nodulating Paenirhizobium fix nitrogen in association with cereal roots
Matthew J Campbell, Beatriz Jorrin, Zohar Katz, Andrzej Tkacz, Raphael Ledermann, Philip S Poole
ISME Communications.2026;[Epub] CrossRef - Genomic and polyphasic characterization of six novel Hymenobacter species isolated from soil in Korea
Yuna Park, Seona Park, Soohyun Maeng, Myung Kyum Kim
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Description of Sulfitobacter gelatinilyticus sp. nov. and Sulfitobacter weihaiensis sp. nov., isolated from marine sediment
Jing Zhang, Zou-Yu Jin, Hai-Qing Zhang, Zi-Hao Wan, Yuan-Xi Xiao, Hui-Xing Li, Zong-Jun Du
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Genomic and phenotypic insights into Pseudocolwellia antarctica sp. nov., a novel psychrotolerant bacterium with symbiotic potential from Antarctic zooplankton
Min Kyo Kim, Seung Ju Oh, Bo Min Lee, Jun Lee, Chung Yeon Hwang
Scientific Reports.2026;[Epub] CrossRef - Rhodococcus dendrobeaniae sp. nov., an actinomycete isolated from an Arctic marine invertebrate exhibiting cytotoxic activity, and an emended description of Rhodococcus sovatensis
Kim van Wezel, Elaine M. Romines, Kine Ø. Hansen, Jeanette H. Andersen, Espen H. Hansen, Patrycja Golińska, Yannik K.H. Schneider
Systematic and Applied Microbiology.2026; 49(5): 126755. CrossRef - Deciphering the genomic features of four newly isolated polyvalent bacteriophages infecting Pseudomonas coronafaciens pv. garcae: A tale of small beginnings
Fernanda C. Moreli, Carlos A. Quinde, Basilio Cieza, Aakash Basu, Marta M.D.C. Vila, Carla Pereira, Paul Hyman, Victor M. Balcão
Bacteriophage.2026; 1: 100010. CrossRef - Routine methods misidentify Serratia spp.: Limitations of MALDI-TOF MS revealed by whole-genome sequencing
Ingrid Macedo Felício, Edgard Freitas Vianna, Mila Muraro Almeida, Jéssica Oliveira Abreu, Robson Souza Leão, Elizabeth Andrade Marques
Diagnostic Microbiology and Infectious Disease.2026; 116(4): 117624. CrossRef - Melioribacter sulfuriphilus sp. nov., facultatively anaerobic thermophilic sulfur- and thiosulfate-respiring bacterium from Karmadon hot springs of North Ossetia (Russian Federation)
Olga A. Podosokorskaya, Alexander Y. Merkel, Andrei A. Novikov, Alexandra A. Klyukina, Alexander G. Elcheninov
Systematic and Applied Microbiology.2026; 49(6): 126768. CrossRef - Description of Kinneretia algicola sp. nov. isolated from a freshwater green alga, and reclassification of 9 species within the family Sphaerotilaceae
Byeong Jun Choi, Hülya Bayburt, Hui Seong Won, Dae Gyu Choi, Ji Young Jung, Che Ok Jeon
Systematic and Applied Microbiology.2026; 49(6): 126771. CrossRef - Phylogenetic diversity, ecological function, and evolutionary history of three novel phyla: Yinglongibacterota, Xuanmingibacterota, and Gonggongibacterota
Jing‐Yi Zhang, Man‐Chun Liu, Zheng‐Han Lian, Meng‐Meng Li, Lei Gao, Yu‐Ting Ouyang, Maite Ortúzar, Lan Liu, Nimaichand Salam, Jian‐Yu Jiao, Wen‐Jun Li
Journal of Systematics and Evolution.2026;[Epub] CrossRef - Novel Thermophilic Species of Limisphaera Demonstrate Facultatively Anaerobic Mode of Life and Utilize a Wide Range of Carbohydrates
Olga A. Podosokorskaya, Tatyana G. Sokolova, Kseniya S. Zayulina, Alexandra A. Klyukina, Polina R. Klepikova, Andrei A. Novikov, Alexander Y. Merkel, Alexander G. Elcheninov
Life.2026; 16(9): 1543. CrossRef - Enrichment and characterization of a haloalkaline-tolerant anammox bacterium
Han-Yin Chuang, Jer-Horng Wu, Shan-Hua Chen, Wei-Yu Chen, Li-Jin Fong, Yi-Ting Lin
The ISME Journal.2026;[Epub] CrossRef - Pseudaquabacterium prasiolae sp. nov., Isolated from the Freshwater Green Alga Prasiola japonica, and Rubrivivax soli sp. nov., Isolated from Soil, with Reclassification of Aquabacterium humicola as Pseudaquabacterium humicola comb. nov.
Jae Kyeong Lee, Seo Hui Choi, Seon Hoo Jung, Yeong Eun Kwon, Jeong Min Kim, Che Ok Jeon
Current Microbiology.2026;[Epub] CrossRef - Megamimivirus double-stranded DNA linear genomes flanked by highly diverse terminal inverted repeats
Yucheng Xia, Lanlan Cai, Boyu Ding, Baiyu Su, Rui Zhang, Kristin N. Parent
Journal of Virology.2026;[Epub] CrossRef - Taxonomic characterization and secondary metabolic profiling of three novel species of the genus Kinneretia isolated from crater Lake water
Zi-Xuan Liu, You-Jun Liao, Ya-Jing Yu, Ai-Hua Li
Systematic and Applied Microbiology.2026; 49(6): 126770. CrossRef - Acinetobacter legionensis sp. nov. and Acinetobacter psychrotolerans sp. nov. isolated from different types of retail meat
Alba Puente, Cristina Galisteo, José F. Cobo-Díaz, Filipa Grosso, Coral Barcenilla, Mercedes López, Miguel Prieto, Luisa Peixe, Avelino Alvarez-Ordóñez
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Expanding the diversity of Desulfovibrio from the human gut: Desulfovibrio intestinivivus sp. nov., Desulfovibrio desulfopostgatei sp. nov. and Desulfovibrio faecalis sp. nov
Marnie Barham, Melinda J. Mayer, Kathryn Gotts, Arjan Narbad, Lizbeth Sayavedra
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - A rice rhizosphere-derived methanotrophic consortium enhances root growth and reduces methane intensity in flooded soil
Rey Anthony Sanjorjo, Tenzin Tseten, Jong-Wook Son, Snowie Jane G. Ampode, Lorraine Joule B. Estrada, So Yeong Park, Soon-Kyeong Kwon, Pil-Joo Kim, Sang-Hwal Yoon, Moonhyuk Kwon, Min-Kyoung Kang, Seon-Won Kim
Applied Soil Ecology.2026; 227: 107485. CrossRef - Description of Demequina pilifera sp. nov. and Demequina ureilytica sp. nov. isolated from a mixture of oil production fluids in Shengli Oilfield
Yuwei Liu, Danni Wu, Ya-Jing Yu, Xin Song, Qiongyao Chen, Man Cai, Hong Ming
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Biodegradation of petroleum hydrocarbon by Gordonia oleivorans sp. nov. isolated from oil-contaminated soil
Thi Tuyet Nhan Le, Jin Jun, Hosun Aum, Jihoon Jung, Jaisoo Kim
Scientific Reports.2026;[Epub] CrossRef - Phylogenomic analysis and characterization of a novel metagenome-assembled genome from the Bay of Bengal and description of Candidatus Niobacter visakhapatnamensis gen. nov., sp. nov
Naga Radha Srinivas Tanuku, Anil Kumar Pinnaka, Pradeep Kumar Patel, Hardik Chavda, Naveen Sagar Garbhapu, Satyanarayana Reddy Tadi, Ann Rose
Archives of Microbiology.2026;[Epub] CrossRef -
Pan-proteome regulation of marine
Synechococcus
nutrient stress plasticity
Nathan S. Garcia, Mak A. Saito, Renne Harcourt, Matthew R. McIlvin, Adam C. Martiny, Jizhong Zhou
mBio.2026;[Epub] CrossRef - Beyond the boundaries of microbial diversity in radioactive environments: novel microbial species isolated from a former silver-uranium mine’s radon-saturated waters
Gabriela Kapinusova, Kunal Jani, Petr Pajer, Alena Filipova, Pavel Ulbrich, Tomas Cajthaml, Michal Strejcek, Jachym Suman, Ondrej Uhlik
BMC Microbiology.2026;[Epub] CrossRef - Parasalinivibrio latis gen. nov., sp. nov., isolated from the distal gut of healthy farmed Asian Seabass (Lates calcarifer)
Shuan Er, Melissa Soh, Adrian Low, Henning Seedorf
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Acidisoma cladoniae sp. nov., an acidotolerant bacterium isolated from an Antarctic lichen
Un Cho, Jehyun Jeon, Woohyun Kim, Soon Gyu Hong, Hyoungseok Lee, Yung Mi Lee
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Phenylobacterium ferrooxidans sp. nov., isolated from a sub-surface geothermal aquifer in Iceland
Eva Pouder, Erwann Vince, Karen Jacquot, Maimouna batoma Traoré, Ashley Grosche, Maria Ludwig, Mohamed Jebbar, Loïs Maignien, Karine Alain, Sophie Mieszkin
Systematic and Applied Microbiology.2025; 48(1): 126578. CrossRef - Streptomyces yaizuensis sp. nov., a berninamycin C-producing actinomycete isolated from sponge
Miku Takahashi, Kanata Hoshino, Moriyuki Hamada, Tomohiko Tamura, Ryota Moriuchi, Hideo Dohra, Youji Nakagawa, Susumu Kokubo, Motoyuki Yamazaki, Hiroyuki Nakagawa, Masayuki Hayakawa, Shinya Kodani, Hideki Yamamura
The Journal of Antibiotics.2025; 78(1): 35. CrossRef - Advanced aspects of acetogens
Anja Poehlein, Benjamin Zeldes, Maximilian Flaiz, Tim Böer, Alina Lüschen, Franziska Höfele, Kira S. Baur, Bastian Molitor, Christian Kröly, Meng Wang, Quan Zhang, Yixuan Fan, Wei Chao, Rolf Daniel, Fuli Li, Mirko Basen, Volker Müller, Largus T. Angenent,
Bioresource Technology.2025; 427: 131913. CrossRef - Description of Hyphococcus formosus sp. nov. and Hyphococcus lacteus sp. nov., isolated from coastal sediment, and reclassification of Marinicaulis flavus as Hyphococcus luteus nom. nov. and Marinicaulis aureus as Hyphococcus aureus comb. nov
Yu-Qi Ye, Xin-Yue Zhang, Hong-Nan Gong, Meng-Qi Ye, Zong-Jun Du
Systematic and Applied Microbiology.2025; 48(1): 126575. CrossRef - Methyloraptor flagellatus gen. nov., sp. nov., novel Ancalomicrobiaceae-affiliated facultatively methylotrophic bacteria that feed on methanotrophs of the genus Methylococcus
Victoria A. Saltykova, Olga V. Danilova, Igor Y. Oshkin, Svetlana E. Belova, Natalia E. Suzina, Nikolai V. Pimenov, Svetlana N. Dedysh
Systematic and Applied Microbiology.2025; 48(1): 126565. CrossRef - Taxonomic and genomic characterization of a siderophore-producing bacterium, Rhodoligotrophos ferricapiens sp. nov isolated from lettuce cultivation soil
Yu-Jin Kim, Yong-Seok Kim, Chang-Jun Cha
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Florfenicol-resistant Brevundimonas sanguinis sp. nov., a novel bacterium isolated from patient blood in South Korea
Ji Hee Lee, Yewon An, Su Yeon Kim
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Aquibaculum sediminis sp. nov., a halotolerant bacteria isolated from salt lake sediment
Qing-Yu Xu, Lei Gao, Dildar Wu, Xin-Yao Li, Yong-Hong Liu, Yao Zhang, Yue-Heng Chen, Ting-Ting She, Bao-Zhu Fang, Wen-Jun Li
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Infection signatures of multiple Nucleocytoviricota virus lineages in the brown algae Undaria pinnatifida revealed by population-wide genome analysis
Hiroki Ban
Journal of Applied Phycology.2025; 37(4): 2705. CrossRef - Genomic insights into novel predatory myxobacteria isolated from human feces
Joyasree Das, Shilpee Pal, Anu Negi, Shiva S. Sundharam, Amit Yadav, Srikrishna Subramanian, S. K. Sinha, Jayanta Samanta, Srinivasan Krishnamurthi, Jan Claesen
Microbiology Spectrum.2025;[Epub] CrossRef - Polyphasic Taxonomic Analysis of Pontitalea aquivivens gen. nov., sp. nov., Isolated from Seawater
Jaewoo Yoon
Current Microbiology.2025;[Epub] CrossRef - Flavobacterium arundinis sp. nov., Flavobacterium calami sp. nov., Flavobacterium helocola sp. nov. and Flavobacterium flavipallidum sp. nov., isolated from stagnant water in a clump of Phragmites japonica Steud
Sunho Park, Inhyup Kim, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Virgifigura deserti gen. nov., sp. nov., isolated from the Gurbantunggut Desert soil
Qi Li, Zi-Qi Peng, Wen-Ling Liu, Zhen-Hao Luo, Shuai Li, Wen-Jun Li, Lei Dong
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Resolution of MALDI-TOF compared to whole genome sequencing for identification of Bacillus species isolated from cleanrooms at NASA Johnson Space Center
Farnaz Mazhari, Aaron B. Regberg, Christian L. Castro, Michael G. LaMontagne
Frontiers in Microbiology.2025;[Epub] CrossRef -
Thalassobellus suaedae gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a halophyte Suaeda japonica
Su Yeon Lee, Ami Rho, Jy Young Choi, Jaeho Choi, Bo Min Lee, Byung Cheol Cho, Chung Yeon Hwang
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Nocardioides eburneus sp. nov., isolated from commercial soil
Min-Seok Kang, Jae-yon Yu, Yong Ho Kim, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Rubrolithibacter danxiaensis gen. nov., sp. nov. isolated from red sandy conglomerate in the Danxia Mountain
Wen-Hui Lian, Huan-Huan He, Ying Wang, Zhuo-Huan Zheng, Fang Chen, Ting Zhou, Chao-Jian Hu, Jia-Rui Han, Lei Dong, Wen-Jun Li
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Bacteria in the Phylum Bacillota Degrade Nicotine Through the Variant of Pyridine and Pyrrolidine Pathway
Xiu-Ming Liu, Xuan Hai, Cong-Jian Li, Yu-Fan Han, Xing Chen, Yu-Jin Fan, Jian Wu, En-Min Zhou, Yuan-Dong Li, Ling-Ling Yang, Yan-Qing Duan, Xiao-Yang Zhi
Current Microbiology.2025;[Epub] CrossRef -
Schlesneria sphaerica sp. nov., a neutrophilic, xylan-degrading planctomycete from a mountain wetland, and emended description of the genus Schlesneria
Irina S Kulichevskaya, Anastasia A Ivanova, Daniil G Naumoff, Anna A Zlatogorskaya, Gennady S Kachmazov, Svetlana N Dedysh
FEMS Microbiology Letters.2025;[Epub] CrossRef - Characterization of three novel Helicobacter species infecting stomachs of dogs and cats: Helicobacter gastrocanis sp. nov., Helicobacter gastrofelis sp. nov., and Helicobacter felistomachi sp. nov.
Emiko Rimbara, Sae Aoki, Masato Suzuki, Hirotaka Kobayashi, Taisuke Nakagawa, Yuko Goto-Koshino, Sachiyo Nomura, Wan-Ying Du, Hidenori Matsui, Shigetarou Mori, Keigo Shibayama, Tsuyoshi Kenri, Koichi Ohno
Frontiers in Microbiology.2025;[Epub] CrossRef - Evolution of far-red light photoacclimation in cyanobacteria
Laura A. Antonaru, Cecilia Rad-Menéndez, Susan Mbedi, Sarah Sparmann, Matthew Pope, Thomas Oliver, Shujie Wu, David H. Green, Muriel Gugger, Dennis J. Nürnberg
Current Biology.2025; 35(11): 2539. CrossRef - Genome-based classification and phylogenetic revision of the family Colwelliaceae with proposals for new genera and species
Min Seo Lee, Sung-Hyun Yang, Yun Jae Kim, Yeong-Jun Park, Mi-Jeong Park, Kae Kyoung Kwon
Frontiers in Ecology and Evolution.2025;[Epub] CrossRef - FastAAI: efficient estimation of genome average amino acid identity and phylum-level relationships using tetramers of universal proteins
Kenji Gerhardt, Carlos A Ruiz-Perez, Luis M Rodriguez-R, Chirag Jain, James M Tiedje, James R Cole, Konstantinos T Konstantinidis
Nucleic Acids Research.2025;[Epub] CrossRef - Reduction of enteric methane emission using methanotroph-based probiotics in Hanwoo steers
Tenzin Tseten, Rey Anthony Sanjorjo, Jong-Wook Son, Keun Sik Baik, Janine I. Berdos, Seon-Ho Kim, Sang-Hwal Yoon, Min-Kyoung Kang, Moonhyuk Kwon, Sang-Suk Lee, Seon-Won Kim
Animal Microbiome.2025;[Epub] CrossRef - Isolation and Characterisation of Gracilimonas aurantiaca sp. nov., A Novel Bacterium Isolated from Tidal-Flat Sediment
Jaincy N. Jayan, Sathiyaraj Srinivasan, Sang-Seob Lee
Current Microbiology.2025;[Epub] CrossRef - Closed genomes of commercial inoculant rhizobia provide a blueprint for management of legume inoculation
MacLean G. Kohlmeier, Graham W. O'Hara, Joshua P. Ramsay, Jason J. Terpolilli, Gladys Alexandre
Applied and Environmental Microbiology.2025;[Epub] CrossRef -
Flavonifractor porci sp. nov. and Flintibacter porci sp. nov., two novel butyrate-producing bacteria of the family Oscillospiraceae
Han-Yu Niu, Jie Zhang, Hao-Jie Huang, Xin-Wei Sun, Hao-Yu Chen, Xiao-Meng Wang, Ci Liu, Ming-Xia Bi, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Characterisation of Aequorivita ciconiae sp. nov., isolated from oriental stork, Ciconia boyciana
Jeong-Eun Han, Seomin Kang, So-Yeon Lee, Jin-Woo Bae
Antonie van Leeuwenhoek.2025;[Epub] CrossRef -
Sulfitobacter sediminis sp. nov., a novel halophilic bacterium isolated from tidal flat sediment
Jaincy N. Jayan, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Gracilimonas qinghaiensis sp. nov., a halophilic bacterium from a high-altitude saline lake exhibiting diverse metabolic potential and ecological adaptation
Haohao Wang, Chi Zhang, Yaqin Chen, Yifan Guo, Lijian Ding, Shengfa Zhang, Gaijun Du, Weiyan Zhang, Shan He
Current Research in Microbial Sciences.2025; 9: 100413. CrossRef - Isolation and characterization of Sporomusa carbonis sp. nov.: a carboxydotrophic hydrogenogen in the genus of Sporomusa isolated from a charcoal-burning pile
Tim Böer, Florian P. Rosenbaum, Lena Eysell, Volker Müller, Rolf Daniel, Anja Poehlein
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Paenibacillus zeirhizosphaerae sp. nov., isolated from surface of the maize (Zea mays) roots in a horticulture field, Hungary
Dalma Márton, Milán Farkas, Anna Bedics, Erika Tóth, András Táncsics, Károly Bóka, Gergely Maróti, Erzsébet Baka, Balázs Kriszt, Mátyás Cserháti
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Marivivens marinum sp. nov., isolated from tidal flat, Gochang, South Korea
Min-Seok Kang, Hyung-Seop Kim, Jae-yon Yu, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Jannaschia maritima sp. nov., a novel marine bacterium isolated from the biofilm of concrete breakwater structures
Hao Feng, Shuyi Liang, Ruisi Li, Hui Wang, Runlin Cai
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Ascidiimonas meishanensis sp. nov. and Leptobacterium meishanense sp. nov., two bacteria isolated from marine sediment in the East China Sea
Hao Wang, Huiting Wang, Xinyu Liu, Dawoon Jung, Eun-Young Seo, Shan He, Weiyan Zhang, Lijian Ding
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Meridianimarinicoccus marinus sp. nov., Isolated from Tidal Flat
Min-Seok Kang, Jae-Yon Yu, Hyung-Seop Kim, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
Current Microbiology.2025;[Epub] CrossRef - Taklimakanibacter albus sp. nov., an Endophytic Bacterial Species Isolated from the Root of Paris polyphylla var. yunnanensis
Jin-Yu Tian, Zhen Zhang, Yu Zhao, Xiao-Yang Zhi, Ling-Ling Yang
Current Microbiology.2025;[Epub] CrossRef - Comprehensive genomic and functional analysis of Leuconostoc lactic acid bacteria in alcohol and acetaldehyde metabolism
Joo-Han Gwak, Yun Ji Choi, Hina Ayub, Min Kyeong Seol, Hongik Kim, Man-Young Jung
Journal of Microbiology.2025; 63(2): e2410026. CrossRef - Comamonas squillarum sp. nov., Isolated from Intestine of Red Swamp Crayfish (Procambarus clarkii)
Shi Shi, Dao-Feng Zhang, Hong-Chuan Wang, Fu-Hui Jiang, Li-Fan Cui, Ying Huang
Current Microbiology.2025;[Epub] CrossRef -
Limibacterium fermenti gen. nov., sp. nov., a novel member of the family Dysgonomonadaceae isolated from the Chinese strong aroma-type Baijiu fermentation system
Yang Gu, Huilin Wang, Xia Zhang, Zhiyun Peng, Jian Su, Dong Zhao, Jia Zheng
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Inconstantimicrobium mannanitabidum sp. nov., a novel member of the family Clostridiaceae isolated from anoxic soil under the treatment of reductive soil disinfestation
Atsuko Ueki, Akio Tonouchi, Sachi Honma, Nobuo Kaku, Katsuji Ueki
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Halomonas pelophila sp. nov., isolated from mud and Halomonas aquatica sp. nov., isolated from marine water
Subin Yook, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Taegun Seo
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Metabolic redundancy and specialisation of novel sulfide-oxidizing Sulfurimonas and Sulfurovum along the brine-seawater interface of the Kebrit Deep
Rayyan Alamoudi, Alan Barozzi, Grégoire Michoud, Marc W. Van Goethem, Charlene Odobel, Yue Chen, Ramona Marasco, Daniele Daffonchio
Environmental Microbiome.2025;[Epub] CrossRef - Three Novel Bacterial Species, Roseateles flavus sp. nov., Roseateles paludis sp. nov., and Roseateles hydrophilus sp. nov., Isolated from Various Water-Related Environments
Haejin Woo, Geeta Chhetri, Inhyup Kim, Sunho Park, Hyunji Lee, Subin Yook, Taegun Seo
Current Microbiology.2025;[Epub] CrossRef - Taxonomic, genomic, and ecological insights into a novel Flavobacteriaceae strain from coastal tidal flats
Haohao Wang, Jiahui Liu, Yifan Guo, Yaqin Chen, Chi Zhang, Shan He, Weiyan Zhang, Lijian Ding
BMC Microbiology.2025;[Epub] CrossRef - High diversity of nitrifying bacteria and archaea in biofilms from a subsea tunnel
Linnea F M Kop, Hanna Koch, Paula Dalcin Martins, Carolina Suarez, Sabina Karačić, Frank Persson, Britt-Marie Wilén, Per Hagelia, Mike S M Jetten, Sebastian Lücker
FEMS Microbiology Ecology.2025;[Epub] CrossRef -
Dethiothermospora halolimnae gen. nov., sp. nov., a novel moderately halophilic, thermotolerant, bacterium isolated from a brine lake
Luke A. Fisher, Saloni R. Dangre, Arthur Odenheimer, Nirav Patel, Peter T. Doran, Jeff S. Bowman, Britney E. Schmidt, Douglas H. Bartlett
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Whole genome sequence data of Mycolicibacterium parafortuitum Panama NTM 1 from a dairy farm in Panama
Johanna Elizabeth Ku, Alejandro Llanes, Francisco Guizado-Batista, Emmanuel Hernández-Ricord, Amanda Ramírez-Casanova, Pave Mislov-Vallarino, Alexa Prescilla-Ledezma, Nicolas Torrales, Fermín Acosta, Amador Goodridge, Nora Ortiz de Moreno
Data in Brief.2025; 59: 111368. CrossRef - Genomic and functional characterization of the Pantoea ananatis nfd35 strain, a potential biocontrol agent of anthracnose disease in Trichosanthes kirilowii Maxim
Ziang He, Feng Zhu, Shuzhen Sun, Ying Zhang, Rui Min, Huixiang Yang, Leiming Xu, Dengke Yin, Weifang Xu
Physiological and Molecular Plant Pathology.2025; 138: 102683. CrossRef - Growth physiology, genomics, and proteomics of Desulfurivibrio dismutans sp. nov., an obligately chemolithoautotrophic, sulfur disproportionating and ammonifying haloalkaliphile from soda lakes
Dimitry Y. Sorokin, Alexander Y. Merkel, Rustam H. Ziganshin, Ilya V. Kublanov
Frontiers in Microbiology.2025;[Epub] CrossRef - Isolation of a putative sulfur comproportionating microorganism
Heidi S. Aronson, Douglas E. LaRowe, Jennifer L. Macalady, Jan P. Amend
Scientific Reports.2025;[Epub] CrossRef - Phylogenomics as baseline for taxonomy description: Amphibiibacter pelophylacis gen. nov., sp. nov., a novel taxon of the family Sphaerotilaceae, class Betaproteobacteria, isolated from the skin microbiota of Pelophylax perezi from different populations
Sara Costa, Diogo Neves Proença, Isabel Lopes, Paula V. Morais
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Harmony in diversity: Reorganizing the families within the order Pseudomonadales
José David Flores-Félix, Paula García-Fraile, Zaki Saati-Santamaría
Molecular Phylogenetics and Evolution.2025; 206: 108321. CrossRef - A novel carotenoid-producing bacterium, Paenibacillus roseopurpureus sp. nov., isolated from Korean marine mud
Chi Young Hwang, Eui-Sang Cho, Young-Do Nam, So-Lim Park, Seong-Il Lim, Myung-Ji Seo
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Novel thermophilic hydrolytic bacterium Rarispira pelagica gen. nov., sp. nov., reclassification of Spirochaeta thermophila as Winmispira thermophila gen. nov., comb. nov., and proposal of Winmispiraceae fam. nov. and Winmispirales ord. nov. in the class
Olga A. Podosokorskaya, Anastasiia I. Maltseva, Alexander G. Elcheninov, Andrei A. Novikov, Kseniya S. Zayulina, Alexander Y. Merkel
Systematic and Applied Microbiology.2025; 48(3): 126604. CrossRef - Novosphingobium rhizovicinum sp. nov. and Novosphingobium kalidii sp. nov., two novel species isolated from rhizosphere soil and a root of halophyte Kalidium cuspidatum
Rui-Qi Sun, Wen-Xia Dong, Jia-Hui Zeng, Hua-Mei Wei, Lian Xu, Ji-Quan Sun
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Probiotic Potential of Enterococcus lactis GL3 Strain Isolated from Honeybee (Apis mellifera L.) Larvae: Insights into Its Antimicrobial Activity Against Paenibacillus larvae
Manhong Ye, Yinhong Jiang, Qiannan Han, Xiaoyuan Li, Chuang Meng, Chao Ji, Feng Ji, Bin Zhou
Veterinary Sciences.2025; 12(2): 165. CrossRef -
Pelomonas baiyunensis sp. nov., Pelomonas candidula sp. nov., Pelomonas dachongensis sp. nov., Pelomonas lactea sp. nov., Pelomonas margarita sp. nov., Pelomonas nitida sp. nov., Pelomonas parva sp. nov. and Roseateles rivi sp. nov., isolated
Huibin Lu, Guannan Li, Shan Yu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Structure and mechanism of the Zorya anti-phage defence system
Haidai Hu, Philipp F. Popp, Thomas C. D. Hughes, Aritz Roa-Eguiara, Nicole R. Rutbeek, Freddie J. O. Martin, Ivo Alexander Hendriks, Leighton J. Payne, Yumeng Yan, Dorentina Humolli, Victor Klein-Sousa, Inga Songailiene, Yong Wang, Michael Lund Nielsen, R
Nature.2025; 639(8056): 1093. CrossRef - Liberiplasma polymorphum gen. nov., sp. nov., a novel cell-wall-less free-living anaerobe, isolated from a terrestrial mud volcano, and proposal of Liberiplasmataceae fam. nov. and Liberiplasmatales ord. nov
M.A. Khomyakova, A.Y. Merkel, A.A. Novikov, A.I. Slobodkin
Systematic and Applied Microbiology.2025; 48(4): 126629. CrossRef - Opacimonas immobilis sp. nov., a novel non-flagellated Alteromonadaceae species with the smallest genome isolated from the phycosphere of the diatom Actinocyclus curvatulus
Xiaoyu Yang, Xuanru Lin, Runlin Cai, Hui Wang, Guanjing Cai
Archives of Microbiology.2025;[Epub] CrossRef -
Draft genome sequence of
Desulfobacterota
strain M19, a mesophilic sulfur-disproportionating bacterium from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
Marie Hemon, Lukáš Novák, Maxime Allioux, Léna Ailliot, Erwann Vince, Karine Alain, Simon Roux
Microbiology Resource Announcements.2025;[Epub] CrossRef - Identification and functional genomic analyses of Bartonella isolates from honey bees, and reassessment of the taxonomy of the genus Bartonella
Juliana Botero, Nikolas Basler, Margo Cnockaert, Charlotte Peeters, Maria Schreiber, Manja Marz, Dirk C. de Graaf, Jelle Matthijnssens, Peter Vandamme
Systematic and Applied Microbiology.2025; 48(4): 126625. CrossRef -
Pseudidiomarina salilacus sp. nov., a novel bacterium of the genus Pseudidiomarina isolated from sediment in Yuncheng Salt Lake
Hui-Ying Yu, Jia-Tan Wei, Chuan-Xu Wang, Zhuo Wang, Ya-Jie Niu, Wen-Jun Li, Bao-Zhu Fang, Hao-Ran Guo, Xin Li
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Microbial dark matter spearheading the biogeochemical cycle in the Solar Lake of Taba, Egypt
Rehab Z. Abdallah, Ali H.A. Elbehery, Amged Ouf, Rania Siam
Current Research in Microbial Sciences.2025; 9: 100433. CrossRef -
Draft genome sequence of an
Acinetobacter courvalinii
isolate from Africa
Ahmed Olowo-Okere, E. Skiebe, G. Wilharm, Simon Roux
Microbiology Resource Announcements.2025;[Epub] CrossRef - Phycobium rhodophyticola gen. nov., sp. nov. and Aliiphycobium algicola gen. nov., sp. nov., isolated from the phycosphere of marine red algae
Jeong Min Kim, Woonhee Baek, Byeong Jun Choi, Hülya Bayburt, Jae Kyeong Lee, Sung Chul Lee, Che Ok Jeon
Journal of Microbiology.2025; 63(6): e2503014. CrossRef - Isolation and characterization of Fibrella aquatica sp. nov. from freshwater, Fibrella musci sp. nov. from moss on soil and Fibrella arboris sp. nov. from moss on a tree
Chunghwan Baek, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Subin Yook, Seunghui Kwak, Jisu Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Synergy between anammox bacteria and a novel glycogen-accumulating organism in domestic sewage treatment under carbon-poor conditions
Hanbin Wang, Qiong Zhang, Jialin Li, You Wu, Xiyao Li, Liang Zhang, Yongzhen Peng
Chemical Engineering Journal.2025; 520: 165931. CrossRef -
Aestuariibius violaceus sp. nov., isolated from a marine limpet Cellana toreuma
Min Seo Lee, Mi-Jeong Park, Purena Son, Taekeun Rho, Kae Kyoung Kwon, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Reclassification of Moraxella boevrei, M. osloensis and M. atlantae, into the genus Faucicola, and proposal of a new genus within the family Moraxellaceae, Lwoffella lincolnii gen. nov., comb. nov., to accommodate the divergent species Moraxella lincolnii
Imed Sbissi, Ikram Kammoun, Haifa El May, Tesnim Bouzidi, Faten Ghodhbane-Gtari, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Pyranulibacter aquaticus gen. nov., sp. nov., the first nitrate-reducing representative of the class Ignavibacteria from an Iturup well
Olga A. Podosokorskaya, Alexander Y. Merkel, Andrei A. Novikov, Alexandra A. Klyukina, Alexander G. Elcheninov
Systematic and Applied Microbiology.2025; 48(5): 126639. CrossRef - Challenges in the Identification of Environmental Bacterial Isolates from a Pharmaceutical Industry Facility by 16S rRNA Gene Sequences
Juliana Nunes Ramos, Luciana Veloso da Costa, Verônica Viana Vieira, Marcelo Luiz Lima Brandão
DNA.2025; 5(3): 33. CrossRef - Insights into the bacterial fraction of sediments from the South China Sea: physiological, chemotaxonomic, and genomic characterization of seven novel members of the Bacillaceae family
Shu-Tong Ge, Hong Cheng, Ying-Wen Zhong, Jia-Ling Tang, Xin-Yue Huang, Bin Wei, Yue-Hong Wu, Chun-Sheng Wang
Frontiers in Microbiology.2025;[Epub] CrossRef - Robertkochia aurantiaca sp. nov., and Robertkochia flava sp. nov., two potential quinate- and catechol-degrading bacteria isolated from tidal-flat sediments
Jaincy N. Jayan, Young-Mi Lee, Ye-ji You, Sathiyaraj Srinivasan, Sang-Seob Lee
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Machine learning models for delineating marine microbial taxa
Stilianos Louca
NAR Genomics and Bioinformatics.2025;[Epub] CrossRef - Vibrio iocasae sp. nov., a bacterium isolated from the gill homogenate of bivalve lucinids Indoaustriella scarlatoi in intertidal mangrove sediments
Jia Luo, Huan Zhang, Ziyun Ye, Fei Li, Zhaoshan Zhong, Jiacheng Wang, Minxiao Wang, Chaolun Li
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - PhyloScape: interactive and scalable visualization platform for phylogenetic trees
Jiajia Wang, Bo Zhang, Linglu Zheng, Yan Chen, Chunyang Zhang, Guojiao Lin, Zhen Meng, Xuezhi Wang, Yuanchun Zhou
BMC Bioinformatics.2025;[Epub] CrossRef - Astrobacterium formosum gen. nov., sp. nov., a novel psychrotolerant rosette-forming bacterium from a laboratory psychrophilic EGSB bioreactor
V.V. Potokina, S.N. Parshina, A.Y. Merkel, A.G. Elcheninov, A.V. Vishnyakova, A.N. Avtukh, N.A. Kostrikina, V.M. Tereshina, Y.V. Litti
Systematic and Applied Microbiology.2025; 48(5): 126640. CrossRef -
Thermohahella caldifontis gen. nov., sp. nov., a thermo-halophilic bacterium isolated from a hot spring
Dariimaa Ganbat, Sondor Ganbat, Bo Hyeon Park, Min Kyeong Kim, Jae-Yoon Sung, Won-Jae Chi, Seong-Bo Kim, Dong-Woo Lee, Sang-Jae Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-based reclassification of Blautia coccoides (Kaneuchi et al. 1976) Liu et al. 2008 as a later heterotypic synonym of Blautia producta (Prévot 1941) Liu et al. 2008
Mehdi Fatahi-Bafghi
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genomic characterization of Gillisia xinjiangensis sp. nov.: insights into nitrogen metabolism, stress adaptation, and application potential
Hao-hao Wang, Chi Zhang, Ya-qin Chen, Yi-fan Guo, Li-jian Ding, Sheng-fa Zhang, Gai-jun Du, Wei-yan Zhang, Shan He
Systematic and Applied Microbiology.2025; 48(5): 126645. CrossRef - Duganella hordei sp. nov., Duganella caerulea sp. nov., and Duganella rhizosphaerae sp. nov., isolated from barley rhizosphere
Katsumoto Kishiro, Nurettin Sahin, Daisuke Saisho, Naoki Yamaji, Jun Yamashita, Yuki Monden, Tomoyuki Nakagawa, Keiichi Mochida, Akio Tani
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Carnimonas bestiolae sp. nov. and Cernens ardua gen. nov., sp. nov.: new halotolerant bacteria from the invasive solitary bee Megachile sculpturalis
Juliana Botero, Margo Cnockaert, Yakun Zhang, Charlotte Peeters, Peter Vandamme
Systematic and Applied Microbiology.2025; 48(5): 126648. CrossRef -
Radicibacter daui, gen. nov., sp. nov., isolated from tomato rhizosphere soil and proposal of Radicibacteraceae fam. nov. and Radicibacterales ord. nov.
Joo Hwan Kwon, Lemessa Etana Bultum, Seongmin Lee, Sang-Moo Lee, Minseo Choi, Seon-Woo Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Pseudoduganella rhizocola sp. nov., Isolated from Rhizospheric Soil
Shakiba S. Chegini, Jaincy N. Jayan, Yong Ho Kim, Sathiyaraj Srinivasan, Sang-Seob Lee
Current Microbiology.2025;[Epub] CrossRef - Alicycliphilus soli sp. nov., Isolated from a Plastic Film Greenhouse Soil and the Proposal for the Reclassification of Diaphorobacter limosus as Alicycliphilus limosus comb. nov.
Xinyu Liu, Hailong Liang, Yingying Liu, Huijun Zhang, Hui Han, Bingyue Xin, Xiaomin Wu, Feng Li, Man Song, Long Zhang
Current Microbiology.2025;[Epub] CrossRef - Genome-resolved insights into the bacterial phylum WOR-3: hydrogenotrophic metabolism and unique carbon fixation via archaeal form III RuBisCO
Jianxiong Zeng, Wenzhe Hu, Licao Chang, Zhengshuang Hua, Geng Wu, Yun Fang, Guowei Wang, Chunqiao Xiao, Jun Liu, Michaeline B. N. Albright
mSystems.2025;[Epub] CrossRef - Multiple-omics analysis of three novel haloalkaliphilic species of Kocuria revealed that the phenolic acid-degrading abilities are ubiquitous in the genus
Lian Xu, Rui-Qi Sun, Jia-Hui Zeng, Hua-Mei Wei, Biao Shen, Ji-Quan Sun
Frontiers in Microbiology.2025;[Epub] CrossRef - Isolation of diverse Undibacterium-related strains from alpine lakes and re-examining the taxonomic status of this genus
Hui-Bin Lu, Ling-Yang Kong, Li Chen, Guang-Jie Chen, Jian-Jun Wang
Systematic and Applied Microbiology.2025; 48(6): 126661. CrossRef - Metagenomic binning reveals community and functional characteristics of sulfur- and methane-oxidizing bacteria in cold seep sponge ground
Yan Wang, Lin Gong, Dong Dong, Xinzheng Li
Environmental Microbiome.2025;[Epub] CrossRef - Comprehensive genomic analysis of Sinorhizobium meliloti isolates associated with fenugreek (Trigonella foenum-graecum Linn.) from diverse agroclimatic regions of India
Mitesh Khairnar, Saleh S. Alhewairini, Swapnil Chandrakant Kajale, Vagish Dwibedi, Jayanthi Barasarathi, Andrea Mastinu, Riyaz Sayyed
Chemical and Biological Technologies in Agriculture.2025;[Epub] CrossRef - Description of Fulverythrobacter ferritrahens gen. nov., sp. nov., a Siderophore-Producing Bacterium Isolated from Poultry Manure Compost and Reclassification of Caenibius fulvus and Altererythrobacter segetis as Fulverythrobacter fulvus Comb. nov. and Cr
Shih-Yao Lin, Asif Hameed, Tzu-Yu Lin, Chiu-Chung Young
Current Microbiology.2025;[Epub] CrossRef - Reclassification of Pseudomonas boreopolis Gray and Thornton 1928 (Approved Lists 1980) as Xanthomonas boreopolis comb. nov. and Pseudomonas carboxydohydrogena (ex Sanjieva and Zavarzin 1971) Meyer et al. 1980 as Afipia carboxydohydrogena comb. nov. based
Mehdi Fatahi-Bafghi
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Description of Neorhizobium tunisiense sp. nov., reclassification of Neorhizobium xiangyangii as Pseudorhizobium xiangyangii comb. nov. and proposal of Terrirhizobium terrae gen. nov., comb. nov. to accommodate the divergent species Aliirhizobium terrae
Imed Sbissi, Dhouha Boussoufa, Ikram Kammoun, Rihab Hamra, Hana Dali, Mohamed Tarhouni, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Taxonomic and metabolic diversity of microbial communities in a thermal water stream in Uzbekistan and proposal of two new classes of uncultivated bacteria, Desulfocorpusculia class. nov. and Tepidihabitantia class. nov., named following the rules of SeqC
Galina B. Slobodkina, Alexander Y. Merkel, Kseniya V. Kondrasheva, Alexandra R. Stroeva, Elizaveta A. Bonch-Osmolovskaya, Kahramon D. Davranov, Alexander I. Slobodkin
Systematic and Applied Microbiology.2025; 48(5): 126650. CrossRef -
Qipengyuania marincola sp. nov., Qipengyuania flavescens sp. nov. and Pseudoblastomonas aquimaris sp. nov., three novel members of the family Erythrobacteraceae isolated from seawater
Tian-Pu Li, Dao-Feng Zhang, Zi-Yue Fu, Meng-Han Huang
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - New Isolates of Betachloroviruses Shed Light on the Diversity and Biological Complexity of an Unexplored Group of Giant Algal Viruses
Júlia W. Souza, Lethícia R. Henriques, Roger M. Carlson, Bruna B. F. Botelho, João Victor R. P. Carvalho, João Pedro N. Santos, Eric R. G. R. Aguiar, Irina V. Agarkova, James L. Van Etten, David D. Dunigan, Rodrigo A. L. Rodrigues
Viruses.2025; 17(8): 1096. CrossRef -
Adaptation strategies of iron-oxidizing bacteria
Gallionella
and Zetaproteobacteria crossing the marine–freshwater barrier
Petra Hribovšek, Emily Olesin Denny, Achim Mall, Håkon Dahle, Ida Helene Steen, Runar Stokke, Christa M. Schleper
mBio.2025;[Epub] CrossRef - Genomic diversity and adaptation in Arctic marine bacteria
Michael C. Sadler, Matthias Wietz, Sayaka Mino, Robert M. Morris, Stephen J. Giovannoni
mBio.2025;[Epub] CrossRef - Microbial diversity and functional potential of the Halobates melleus (Heteroptera: Gerridae) microbiome from the Red Sea coastline
Juan David Escobar-Prieto, Marc W. Van Goethem, Bob Vernooij, Chakkiath Paul Antony, Lanna Cheng, Himanshu Mishra, Ramona Marasco, Daniele Daffonchio
Environmental Microbiome.2025;[Epub] CrossRef - Taxonomy for clinicians – recent changes in names of anaerobic species with pathogenic or probiotic properties
Lyudmila Boyanova, Raina Gergova, Rumyana Markovska
Anaerobe.2025; 96: 103002. CrossRef - Expansion and revision of the genus Xanthobacter and proposal of Roseixanthobacter gen. nov.
Maximillian P. M. Soltysiak, Amogh P. Jalihal, Caroline E. Christophersen, Audrey L. H. Ory, Andrew D. Lee, Jessica Boulton, Michael Springer
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Ovoidimarina sediminis gen. nov., sp. nov., a novel member of the Roseobacteraceae isolated from tidal flat sediment
Akila Kathiresan, Jaincy N. Jayan, Hee-Su Kim, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Whole Genome Sequencing-Based Taxonomic Identification of Dulcitol-Positive Cronobacter dublinensis subsp. beijingensis subsp. nov. and Cronobacter dublinensis subsp. infanticibi subsp. nov. from Infant Cereals in China
Xin Gan, Menghan Li, Fengqin Li, Jianyun Zhao, Hui Li, Séamus Fanning, Yinping Dong, Li Bai
Current Microbiology.2025;[Epub] CrossRef - Characterization of Sulfitobacter sediminivivens sp. nov., A Novel Halotolerant, Nitrogen-Assimilating Bacterium from Tidal Flat Sediment
Akila Kathiresan, Hee-Yeon Park, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
Current Microbiology.2025;[Epub] CrossRef - Genome insights into the Bacillus paramycoides RZ3MS14: a multitrait plant growth-promoting rhizobacterium from Amazonian rainforest able to improve the sugarcane growth
Gladys Angélica Apaza-Castillo, Guilherme Kenichi Hosaka, Carolina Alessandra de Almeida Hayashibara, Renan Fantine, Manuella Nóbrega Dourado, Mauricio Santos Rosa, Heloísa Defant, Maria Carolina Quecine, Euan James
FEMS Microbiology Letters.2025;[Epub] CrossRef - Genome-based classification of Halonovum salinarum gen. nov., sp. nov., and Halonovum rutilum sp. nov., two novel halophilic archaea isolated from a solar saltern
Chi Young Hwang, Eui-Sang Cho, Ki-Eun Lee, Eun-Young Lee, Myung-Ji Seo
BMC Microbiology.2025;[Epub] CrossRef -
Puribacter membranae gen. nov., sp. nov., isolated from a biofilm of a membrane bioreactor (MBR) treating sewage
Masashi Hatamoto
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-based classification of Paraniabella aurantiaca gen. nov., sp. nov., isolated from soil and taxonomic reclassification of five species within the genus Niabella
Yong-Seok Kim, Yerang Yang, Miryung Kim, Do-Hoon Lee, Chang-Jun Cha
Journal of Microbiology.2025; 63(10): e2505005. CrossRef - Gudongella ferriphila sp. nov., an Anaerobic Bacterium Isolated from a Terrestrial Mud Volcano
G. Slobodkina, A. Merkel, D. Kopitsyn, A. Slobodkin
Microbiology.2025; 94(6): 893. CrossRef - Genomic characterization of Microbacterium meiriae sp. nov., a novel bacterium isolated from the International Space Station
Fathi Karouia, Lorraine Christine de Oliveira, Asif Hameed, Anna Simpson, Nitin Singh, Punchappady D. Rekha, Christopher E. Mason, Kasthuri Venkateswaran
Scientific Reports.2025;[Epub] CrossRef - Genome insights into Hydrogenophaga taeniospiralis and its R-body genetic determinants
Jorge Lalucat, Antonio Busquets, Magdalena Mulet, Raúl Riesco, Elena García-Valdés, Margarita Gomila
Systematic and Applied Microbiology.2025; 48(6): 126664. CrossRef - Denitraticella aggregata gen. nov., sp. nov. a denitrifying benzoate-utilizing bacterium isolated from a terrestrial mud volcano
Galina Slobodkina, Alexander Merkel, Andrei Novikov, Alexander Slobodkin
Systematic and Applied Microbiology.2025; 48(6): 126665. CrossRef -
Extensive cultivation of human gut phages revealing undescribed
Bacteroidaceae
phages
Zhe Liu, Yaoyu Yang, Sihong Mao, Zhaoqi Wang, Qiheng Zhu, Yuyu Yuan, Ye Xiang
Gut Microbes.2025;[Epub] CrossRef - Comparative Analysis of Evolutionary Distances Using the Genus Mycobacterium
Danila Zimenkov, Anastasia Ushtanit
International Journal of Molecular Sciences.2025; 26(21): 10471. CrossRef - Fast and robust estimate of bacterial genus novelty using the percentage of conserved proteins with unique matches (POCPu)
Charlie Pauvert, Thomas C.A. Hitch, Thomas Clavel
PeerJ.2025; 13: e20259. CrossRef - Acid tolerance and metabolic potential of comammox and nitrite-oxidizing Nitrospira enriched from soil
Yu Takahashi, Hirotsugu Fujitani, Itsuki Taniguchi, Yasuhiro Gotoh, Yuta Shimada, Shuto Ikeda, Tetsuya Hayashi, Kanako Tago, Masahito Hayatsu, Satoshi Tsuneda
ISME Communications.2025;[Epub] CrossRef - Quyinboa mangrovi gen. nov., sp. nov., Quyinboa ferrireducens sp. nov., and Quyinboa sediminis sp. nov., three novel Fe(III)-reducing and nitrogen-fixing bacteria isolated from mangrove sediment, and the proposal of Quyinboaceae fam. nov. within the class
Xiao-Xuan Song, Le Liu, Guan-Jun Chen, Zhenxing Xu, Zong-Jun Du
Systematic and Applied Microbiology.2025; 48(6): 126668. CrossRef -
Solicola agrisoli sp. nov., a novel actinobacterium isolated from agricultural soil in Republic of South Korea
Syed Muhammad Khizar Shah, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales
Joel Hallgren, Jennah E. Dharamshi, Alejandro Rodríguez-Gijón, Julia Nuy, Sarahi L. Garcia, Kristina Jonas
Nature Communications.2025;[Epub] CrossRef - Integrated genomic and mutagenesis analysis of Pseudomonas argentinensis SA190 reveals mechanisms of plant root colonization and stress resilience
Büsra Elkatmis, Sabiha Parween, Abdul Aziz Eida, Rewaa Jalal, Feras Lafi, Intikhab Alam, Stanislav Kopriva, Heribert Hirt, Maged M. Saad
BMC Microbiology.2025;[Epub] CrossRef - Paraburkholderia suaedae sp. nov., a Potential Plant Growth-Promoting Bacterium Isolated from the Halophyte Suaeda japonica
Sunho Park, Hyunji Lee, Subin Yook, Chunghwan Baek, Jisu Kim, Seunghui Kwak, Taeho Na, Taegun Seo
Microorganisms.2025; 13(11): 2498. CrossRef - Genomic and phenotypic insights into the expanding phylogenetic landscape of the Cryptococcus genus
Marco A. Coelho, Márcia David-Palma, Aleksey V. Kachalkin, Miroslav Kolařík, Benedetta Turchetti, José Paulo Sampaio, Michael J. Wingfield, Matthew C. Fisher, Andrey M. Yurkov, Joseph Heitman, Geraldine Butler
PLOS Genetics.2025; 21(11): e1011945. CrossRef -
Nocardioides secundeburneus sp. nov. and Gordonia aurantiaca sp. nov., isolated from soil
Jisu Kim, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Subin Yook, Jung-Hoon Yoon, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Acinetobacter zhairhuonensis sp. nov., isolated from sediments of the East China Sea
Qian Jiang, Yike Wang, Kaiwen Zheng, Yuangui Tang, Yunlu Cui, Qunjian Yin, Daoqiong Zheng, Jinzhong Xu, Daxiong Ji, Dongdong Zhang, Sanjit Chandra Debnath, Pinmei Wang
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Youngimonas ophiurae sp. nov., a Quorum-Quenching Marine Bacterium Isolated from a Brittle Star in the South China Sea, and Reclassification of Lutimaribacter litoralis as Youngimonas litoralis comb. nov.
Zengzhi Liu, Meng Zhang, Qiliang Lai, Shanshan Xu, Ying Xu
Microorganisms.2025; 13(12): 2661. CrossRef - Diversity, metabolic potential and global distribution of the anaerobic fermentative bacteria Phylum Candidatus Cloacimonadota
Yi Liu, Min Yu, Xing Chen, Lingman Ran, Xiao-Hua Zhang
Environmental Microbiome.2025;[Epub] CrossRef - Genomic and Metabolomic Characterization of Kitasatospora griseola JNUCC 62 from Mulyeongari Oreum and Its Cosmeceutical Potential
Mi-Sun Ko, Mi-Yeon Moon, Chang-Gu Hyun
Fermentation.2025; 11(12): 671. CrossRef - A machine learning approach to predict strain-specific phage-host interactions
Pamela Yael Camejo, Felipe Rojas, Antonio Ossa, Rodrigo Hurtado, Daniel Tichy, Christian Pieringer, Michael Pino, Paola Mora-Uribe, Soledad Ulloa, Rodrigo Norambuena, Eduardo Tobar-Calfucoy, Matías Aguilera, Victoria Rojas-Martínez, Onix Cifuentes, Andrea
Scientific Reports.2025;[Epub] CrossRef -
Description of high-altitude, cold-adaptive, metabolically versatile
Dyadobacter aurulentus
sp. nov. isolated from Western Himalayan farmland soils
Amit Yadav, Kiran Kirdat, Vipool Thorat, Ngangyola Tuikhar, Kirti Chundawat, Tushar Lodha, Bhavesh Tiwarekar, Umera Patwekar, Malad Mubarak, Shuchi Shastri, Saurabh Kumar, Yogesh Shouche, Reeta Goel, Rup Lal
Microbiology Spectrum.2025;[Epub] CrossRef - Billgrantia hypersalina sp. nov. LNSP4103-1T: A Halotolerant Bioplastic-Producing Bacterium from Saline Agricultural Soil
Pedro Mauricio Moran-Olvera, Joseph Guevara-Luna, Ivan Arroyo-Herrera, Violeta Larios-Serrato, César Mateo Flores-Ortiz, Luis Barbo Hernández-Portilla, Edgar López-Villegas, Paulina Estrada-de los Santos, Juan Alfredo Hernández-García, María Soledad Vásqu
Microorganisms.2025; 13(12): 2683. CrossRef - Identification of robust species-specific marker genes for the demarcation of the Klebsiella pneumoniae–quasipneumoniae–variicola complex
Mustafa Galib, Viet Hung Nguyen
Journal of Medical Microbiology
.2025;[Epub] CrossRef - Novel insights into the genome organization of Rhizobiaceae: identification of linear plasmids
Nemanja Kuzmanovic, Ryan R. Wick, Michał Kalita, Joanna Puławska, George C. diCenzo, Michael F. Hynes, Kornelia Smalla, Doreen Babin, Torsten Thünen
Microbial Genomics
.2025;[Epub] CrossRef - Putative promiscuous symbionts in deep-sea corals and crinoids may contribute to nitrogen cycling
Flúvio Modolon, Alessandro N. Garritano, Lilian J. Hill, Gustavo Duarte, Amanda Bendia, Rafael de Moura, Vivian Pellizari, Torsten Thomas, Raquel S. Peixoto
Microbiome.2025;[Epub] CrossRef -
Croceiramulus getboli gen. nov., sp. nov., a marine bacterium isolated from the tidal flat
Yeonjae Yoo, Sang Hyun Lee, Dae Young Kwon, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Jae-Jin Kim
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-based reclassification of Fontibacillus solani Ramirez-Bahena et al. 2015 as a later heterotypic synonym of Fontibacillus panacisegetis Lee et al. 2011
Aleyna Nalcaoglu Senocak, Kadriye Inan Bektas, Sabriye Canakci, Ali Osman Belduz
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Methylomonas stagni sp. nov., a methanotroph of the genus Methylomonas, from a reservoir pond in Korea
Joo-Han Gwak, Chanmee Seo, Yongman Kim, Joong-Wook Park, Sung-Keun Rhee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-based reclassification of Metallosphaera prunae as a later heterotypic synonym of Metallosphaera sedula
Pooja, Preeti Yadav, Abhilash Kumar, Princy Hira, Charu Dogra Rawat, Rup Lal, Utkarsh Sood
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-Based Reclassification of [Bizionia] algoritergicola Bowman and Nichols 2005 as Algorimicrobium algoritergicola gen. nov., comb. nov. and description of Algorimicrobium bowmanii sp. nov.
Valeriya Kurilenko, Evgeniya Bystritskaya, Nadezhda Otstavnykh, Peter Velansky, Sergey Baldaev, Viacheslav Eremeev, Natalya Ageenko, Konstantin Kiselev, Olga Nedashkovskaya, Marina Isaeva
Microorganisms.2025; 14(1): 24. CrossRef - Bulleidia extructa PP_925: Genome Reduction, Minimalist Metabolism, and Evolutionary Insights into Firmicutes Diversification
Peter V. Evseev, Irina V. Podoprigora, Andrei V. Chaplin, Zurab S. Khabadze, Artem A. Malkov, Lyudmila I. Kafarskaia, Dmitriy A. Shagin, Yulia N. Urban, Olga Yu. Borisova, Boris A. Efimov
International Journal of Molecular Sciences.2025; 27(1): 448. CrossRef - LINgroups as a Robust Principled Approach to Compare and Integrate Multiple Bacterial Taxonomies
Reza Mazloom, N. Tessa Pierce-Ward, Parul Sharma, Leighton Pritchard, C. Titus Brown, Boris A. Vinatzer, Lenwood S. Heath
IEEE/ACM Transactions on Computational Biology and Bioinformatics.2024; 21(6): 2304. CrossRef -
Microbulbifer spongiae sp. nov., isolated from marine sponge Diacarnus erythraeanus
Nabila Ishaq, Mimi Zhang, Luyao Gao, Micha Ilan, Zhiyong Li
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genome‐based taxonomic analysis of the genus Pseudoalteromonas reveals heterotypic synonyms
Patrick Videau, Maximillian D. Shlafstein, David K. Oline, Scott A. Givan, Linda Fleet Chapman, Wendy K. Strangman, Richard L. Hahnke, Jimmy H. Saw, Blake Ushijima
Environmental Microbiology.2024;[Epub] CrossRef -
Arcicella gelida sp. nov. and Arcicella lustrica sp. nov., isolated from streams in China and re-examining the taxonomic status of all the genera within the families Spirosomataceae and Cytophagaceae
Huibin Lu, Li Chen, Linpei Huang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Sustained bacterial N2O reduction at acidic pH
Guang He, Gao Chen, Yongchao Xie, Cynthia M. Swift, Diana Ramirez, Gyuhyon Cha, Konstantinos T. Konstantinidis, Mark Radosevich, Frank E. Löffler
Nature Communications.2024;[Epub] CrossRef -
Paenalcaligenes faecalis sp. nov., a novel species of the family Alcaligenaceae isolated from chicken faeces
Yiran Zhang, John Quensen, Bo Chen, Hailong Li, James Tiedje, Wei Sun, Xun Qian
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Rhodoferax lithotrophicus sp. nov., a neutrophilic iron-oxidizing and -reducing bacterium isolated from iron-rich freshwater sediments
Shingo Kato, Takashi Itoh, Takao Iino, Mitsuo Sakamoto, Moriya Ohkuma
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Paenibacillus suaedae sp. nov. and Paenibacillus violae sp. nov., isolated from the roots of Suaeda japonica Makino and Viola mandshurica W. Becker with plant growth-promoting potential
Inhyup Kim, Sunho Park, Yonghee Jung, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genetic potential for aerobic respiration and denitrification in globally distributed respiratory endosymbionts
Daan R. Speth, Linus M. Zeller, Jon S. Graf, Will A. Overholt, Kirsten Küsel, Jana Milucka
Nature Communications.2024;[Epub] CrossRef -
Description of the first marine-isolated member of the under-represented phylum
Gemmatimonadota
, and the environmental distribution and ecogenomics of
Gaopeijiales
ord. nov.
Yu-Qi Ye, Meng-Qi Ye, Xin-Yue Zhang, You-Zhi Huang, Zi-Yang Zhou, Yan-Jun Feng, Zong-Jun Du, Thulani P. Makhalanyane
mSystems.2024;[Epub] CrossRef -
Ideonella margarita sp. nov., Ideonella lacteola sp. nov., Pseudaquabacterium inlustre sp. nov. and Pseudaquabacterium rugosum sp. nov., isolated from streams in China and re-examining the taxonomic status of all the genera within the family
Huibin Lu, Li Chen
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Comparative genomics of obligate predatory bacteria belonging to phylum
Bdellovibrionota
highlights distribution and predicted functions of lineage-specific protein families
Sidney C. Davis, Joseph Cerra, Laura E. Williams, Barbara J. Campbell
mSphere.2024;[Epub] CrossRef - Isolation and characterization of cellulose-mineralizing haloalkaliphilic bacteria from Siberian soda lakes
Dimitry Y. Sorokin, Alexander Y. Merkel, Tatjana V. Khizhniak
Frontiers in Microbiology.2024;[Epub] CrossRef - The genome of a new Halorubrum distributum strain ICIS4 isolated from the culture of a microalga Dunaliella salina
Е. А. Selivanova, А. S. Balkin, Yu. А. Khlopko, V. Ya. Kataev, А. О. Plotnikov
Microbiology.2024; 93(4): 444. CrossRef -
Lacrimispora brassicae sp. nov. isolated from fermented cabbage, and proposal of Clostridium indicum Gundawar et al. 2019 and Clostridium methoxybenzovorans Mechichi et al. 1999 as heterotypic synonyms of Lacrimispora amygdalina (Parshina et
Hisami Kobayashi, Yasuhiro Tanizawa, Mitsuo Sakamoto, Moriya Ohkuma, Masanori Tohno
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Clostridium lapidicellarium sp. nov. and Clostridium moutaii sp. nov., two species isolated from fermentation cellar-producing sauce-flavour Chinese baijiu
Fan Yang, Hui Wang, Liang-Qiang Chen, Nan Zhou, Jian-Jun Lu, Xiu-Xin Pu, Bo Wan, Li Wang, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
Piotr Rozwalak, Jakub Barylski, Yasas Wijesekara, Bas E. Dutilh, Andrzej Zielezinski
Nature Communications.2024;[Epub] CrossRef - Description of Streptococcus dentalis sp. nov., Streptococcus gingivalis sp. nov., and Streptococcus lingualis sp. nov., Isolated from Human Oral Cavities
Beom-Jin Goo, Young-Sik Choi, Do-Hun Gim, Su-Won Jeong, Jee-Won Choi, Hojun Sung, Jae-Yun Lee, Jin-Woo Bae
Journal of Microbiology.2024; 62(11): 973. CrossRef - Hohaiivirga grylli gen. nov., sp. nov., a New Member of the Family Methylobacteriaceae, Isolated from Cricket (Gryllus chinensis)
Hong-Chuan Wang, Meng-Han Huang, Dan-Yuan Guo, Wei He, Lu Wang, Zi-Yue Fu, Wen-Jun Li, Ai Hua Zhang, Dao-Feng Zhang
Current Microbiology.2024;[Epub] CrossRef -
Cellulomonas alba sp. nov. and Cellulomonas edaphi sp. nov., isolated from wetland soils
Sunho Park, Inhyup Kim, Geeta Chhetri, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Age, metabolisms, and potential origin of dominant anammox bacteria in the global oxygen-deficient zones
Rui Zhao, Irene H Zhang, Amal Jayakumar, Bess B Ward, Andrew R Babbin
ISME Communications.2024;[Epub] CrossRef - Limosilactobacillus allomucosae sp. nov., a novel species isolated from wild boar faecal samples as a potential probiotic for domestic pigs
Binbin Chen, Shaktheeshwari Silvaraju, Sharifah Nora Ahmad Almunawar, Yu Chyuan Heng, Jolie Kar Yi Lee, Sandra Kittelmann
Systematic and Applied Microbiology.2024; 47(6): 126556. CrossRef - Evaluation of sequence-based tools to gather more insight into the positioning of rhizogenic agrobacteria within the Agrobacterium tumefaciens species complex
Pablo Roberto Vargas Ribera, Nuri Kim, Marc Venbrux, Sergio Álvarez-Pérez, Hans Rediers, Muhammad Anwar
PLOS ONE.2024; 19(11): e0302954. CrossRef -
Chitiniphilus purpureus sp. nov., a novel chitin-degrading bacterium isolated from crawfish pond sediment
Kaiyang Li, Xiong Luo, Rongrong Fan, Zhuoran Ding, Shixue Zheng, Zhengjun Chen
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Thalassotalea aquiviva sp. nov., and Thalassotalea maritima sp. nov., Isolated from Seawater of the Coast in South Korea
Jina Lee, Seung-Hui Song, Kira Moon, Nakyeong Lee, Sangdon Ryu, Hye Seon Song, Sung Moon Lee, Yun Ji Kim, Se Won Chun, Kyung-Min Choi, Aslan Hwanhwi Lee
Journal of Microbiology.2024; 62(12): 1099. CrossRef - Cold adaptation and response genes of Antarctic Cryobacterium sp. SO2 from the Fildes Peninsula, King George Island
Chui Peng Teoh, Marcelo González‑Aravena, Paris Lavin, Clemente Michael Vui Ling Wong
Polar Biology.2024; 47(2): 135. CrossRef - Xiashengella succiniciproducens gen. nov., sp. nov., a succinate-producing bacterium isolated from an anaerobic digestion tank in the family Marinilabiliaceae of the order Bacteroidales
Hao-Jie Huang, Xi Zhang, Xin-Wei Sun, Biao Chen, Xiu-Tong Li, Nan Zhou, Rashidin Abdugheni, Qiu-Yin Cheng, Tie-Jun Zhang, Yao Liu, Yong Jiang, Ye Deng, Shuang-Jiang Liu, Cheng-Ying Jiang
Archives of Microbiology.2024;[Epub] CrossRef -
Paracoccus spongiarum sp. nov., isolated from the marine sponge, Phakellia elegans
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Sorlinia euscelidii gen. nov., sp. nov., a novel acetic acid bacterium isolated from the leafhopper Euscelidius variegatus (Hemiptera: Cicadellidae)
Ramona Marasco, Grégoire Michoud, Kholoud A. Seferji, Elena Gonella, Elisa Garuglieri, Eleonora Rolli, Alberto Alma, Francesca Mapelli, Sara Borin, Daniele Daffonchio, Elena Crotti
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Comparative genomics of the genus Halioglobus reveals the genetic basis for the reclassification of Halioglobus pacificus as Parahalioglobus pacificus gen. nov. comb. nov
Jake Adolf V. Montecillo
International Microbiology.2024; 27(6): 1831. CrossRef -
Neisseria leonii sp. nov., isolated from the nose, lung, and liver of rabbits
Martin Boutroux, Sandrine Favre-Rochex, Olivier Gorgette, Gérald Touak, Estelle Mühle, Christiane Bouchier, Olivier Chesneau, Frédéric J. Veyrier, Dominique Clermont, Praveen Rahi
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Pedobacter rhodius sp. nov. and Pedobacter punctiformis sp. nov., isolated from soil
Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Taxonomic characterization of Sphaerotilus microaerophilus sp. nov., a sheath-forming microaerophilic bacterium of activated sludge origin
Shiori Narihara, Shun Chida, Naoki Matsunaga, Ryosuke Akimoto, Mizuki Akimoto, Aoi Hagio, Tomomi Mori, Tadashi Nittami, Michio Sato, Sehui Mun, Hyeonjin Kang, Ji Hwan Back, Minoru Takeda
Archives of Microbiology.2024;[Epub] CrossRef -
Sphingomonas rustica sp. nov. and Sphingomonas agrestis sp. nov., novel carotenoid-producing bacterial species isolated from farm soil
Hyunji Lee, Inhyup Kim, Sunho Park, Haejin Woo, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Hidden genomic diversity drives niche partitioning in a cosmopolitan eukaryotic picophytoplankton
Yangbing Xu, Shara K K Leung, Taylor M W Li, Charmaine C M Yung
The ISME Journal.2024;[Epub] CrossRef -
Flagellimonas baculiformis sp. nov. and Flagellimonas crocea sp. nov., isolated from surface seawater of the Pacific Ocean
Ming-lei Wang, Ge-Yi Fu, Xue-Wei Xu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Two Novel Bacterial Species, Rhodanobacter lycopersici sp. nov. and Rhodanobacter geophilus sp. nov., Isolated from the Rhizosphere of Solanum lycopersicum with Plant Growth-Promoting Traits
Haejin Woo, Inhyup Kim, Geeta Chhetri, Sunho Park, Hyunji Lee, Subin Yook, Taegun Seo
Microorganisms.2024; 12(11): 2227. CrossRef - Preliminary comparative genomics analysis among Corynebacterium kroppenstedtii complex necessitates a reassessment of precise species associated with mastitis
Ying Huang, Ming-Hui Song, Shun-Guang Li, Hong- Yu Shen, Ping-Hua Qu, Dao-Feng Zhang
Journal of Applied Microbiology.2024;[Epub] CrossRef - Salmonirosea aquatica gen. nov., sp. nov., a Novel Genus within the Family Spirosomaceae, Was Isolated from Brackish Water in the Republic of Korea
Kiwoon Baek, Sumin Jang, Jaeduk Goh, Ahyoung Choi
Microorganisms.2024; 12(8): 1671. CrossRef - Phylogenomic analyses of the genus Actinoplanes: description of four novel genera
Ivan Roman, Victor Fedorenko, Oleksandr Gromyko
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - A hotspot of diversity: novel Shewanella species isolated from Baltic Sea sediments delineate a sympatric species complex
Alberto J. Martín-Rodríguez, Víctor Fernández-Juárez, Valerie D. Valeriano, Indiwari Mihindukulasooriya, Livia Ceresnova, Enrique Joffré, Susanne Jensie-Markopoulos, Edward R. B. Moore, Åsa Sjöling
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - An evolutionary view of the Fusarium core genome
Daniel A. Gomez-Chavarria, Alvaro L. Rua-Giraldo, Juan F. Alzate
BMC Genomics.2024;[Epub] CrossRef - Complete genome sequence of a winter season Vibrio facilitates discovery of a novel subclade of cold-adapted species in the albus clade
Paul D. Kastner, Stephen E. Noell, David A. Essig
Microbial Genomics
.2024;[Epub] CrossRef - Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematicsin addressing challenges in the meta-data era
Jian-Yu Jiao, Rashidin Abdugheni, Dao-Feng Zhang, Iftikhar Ahmed, Mukhtiar Ali, Maria Chuvochina, Svetlana N Dedysh, Xiuzhu Dong, Markus Göker, Brian P Hedlund, Philip Hugenholtz, Kamlesh Jangid, Shuang-Jiang Liu, Edward R B Moore, Manik Prabhu Narsing Ra
National Science Review.2024;[Epub] CrossRef -
Klebsiella Pneumoniae – Taxonomy, Occurrence, Identification, Virulence Factors and Pathogenicity
Dorota Ochońska, Monika Brzychczy-Włoch
Advancements of Microbiology.2024; 63(3): 157. CrossRef - Characterization of a Novel Species of Legionella Isolated from a Healthcare Facility: Legionella resiliens sp. nov
Sandra Cristino, Maria Rosaria Pascale, Federica Marino, Carlo Derelitto, Silvano Salaris, Massimiliano Orsini, Stefano Squarzoni, Antonella Grottola, Luna Girolamini
Pathogens.2024; 13(3): 250. CrossRef - Genome-based classification of Halobellus rubicundus sp. nov., a novel extremely halophilic archaeon isolated from a Korean solar saltern
Chi Young Hwang, Eui-Sang Cho, In-Tae Cha, Ki-Eun Lee, Eun-Young Lee, Myung-Ji Seo
Extremophiles.2024;[Epub] CrossRef - Reclassification of Aestuariicella albida as Pseudomaricurvus albidus comb. nov. and Aestuariicella hydrocarbonica as Pseudomaricurvus hydrocarbonicus comb. nov. Based on Comparative Genomics and Molecular Synapomorphies
Jake Adolf V. Montecillo, Merell P. Billacura, Maria Distressa G. Billacura
Current Microbiology.2024;[Epub] CrossRef - Schauerella fraxinea gen. nov., sp. nov., a bacterial species that colonises ash trees tolerant to dieback caused by Hymenoscyphus fraxineus
Undine Behrendt, Valentin Burghard, Sonja Wende, Kristina Ulrich, Jacqueline Wolf, Meina Neumann-Schaal, Andreas Ulrich
Systematic and Applied Microbiology.2024; 47(4): 126516. CrossRef -
Roseateles subflavus sp. nov. and Roseateles aquae sp. nov., isolated from artificial pond water and Roseateles violae sp. nov., isolated from a Viola mandshurica root
Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - New Drinking Water Genome Catalog Identifies a Globally Distributed Bacterial Genus Adapted to Disinfected Drinking Water Systems
Ashwin S Sudarshan, Zihan Dai, Marco Gabrielli, Solize Oosthuizen-Vosloo, Konstantinos T. Konstantinidis, Ameet J Pinto
Environmental Science & Technology.2024; 58(37): 16475. CrossRef - Phylogenomic evaluation of Mangrovimicrobium sediminis gen. nov. sp. nov., the first nitrogen fixing member of the family Halieaceae adapted to mangrove habitat and reclassification of Halioglobus pacificus to Pseudohaliglobus pacificus comb. nov.
Pravin Kumar, Ashish Verma, Pooja Yadav, Joyasree Das, Lalit Kumar, Srinivasan Krishnamurthi
Science of The Total Environment.2024; 933: 172995. CrossRef - Draft Genome Sequences of Three Janthinobacterium lividum Strains Producing Violacein
Yu Jeong Lee, Jae-Cheol Lee, Kira Moon, Aslan Hwanhwi Lee, Byung Hee Chun
Microbiology and Biotechnology Letters.2024; 52(2): 215. CrossRef -
Eubacterium album sp. nov., a butyrate-producing bacterium isolated from faeces of a healthy human
Feng-Lan Liu, Rashidin Abdugheni, Cong-Guo Ran, Nan Zhou, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode
Daniel Tamarit, Stephan Köstlbacher, Kathryn E. Appler, Kassiani Panagiotou, Valerie De Anda, Christian Rinke, Brett J. Baker, Thijs J.G. Ettema
Systematic and Applied Microbiology.2024; 47(4): 126525. CrossRef -
Alterisphingorhabdus coralli gen. nov. sp. nov., a novel aerobic anoxygenic phototrophic bacteria isolated from reef-building coral
Chang Yan, Kun Zhang, Songbiao Shi, Lili Jian, Beilin Chen, Syed Raziuddin Quadri, Xinpeng Tian
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Raúl Riesco, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Polymorphospora lycopeni sp. nov., a lycopene-producing actinomycetes isolated from lakeside soil sample of Baiyangdian
Jiashan Liu, Shilong Li, Xiaomin Duan, Hongmei Li, Xiumin Zhang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Reclassification of Butyrivibrio crossotus Moore et al. 1976 (Approved Lists 1980) into a novel genus as Eshraghiella crossota gen. nov., comb. nov.
Mehdi Fatahi-Bafghi
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Analysis of the genetic diversity in RNA-directed RNA polymerase sequences: implications for an automated RNA virus classification system
Zhongshuai Tian, Tao Hu, Edward C Holmes, Jingkai Ji, Weifeng Shi
Virus Evolution.2024;[Epub] CrossRef - Fodinisporobacter ferrooxydans gen. nov., sp. nov.—A Spore-Forming Ferrous-Oxidizing Bacterium Isolated from a Polymetallic Mine
Zhen Jiang, Xiutong Li, Zonglin Liang, Zebao Tan, Nan Zhou, Ying Liu, Zhenghua Liu, Huaqun Yin, Kun Luo, Supawadee Ingsriswang, Shuangjiang Liu, Chengying Jiang
Microorganisms.2024; 12(5): 853. CrossRef - An abundant bacterial phylum with nitrite-oxidizing potential in oligotrophic marine sediments
Rui Zhao, Steffen L. Jørgensen, Andrew R. Babbin
Communications Biology.2024;[Epub] CrossRef - Genomic and phenotypic characterization of 26 novel marine bacterial strains with relevant biogeochemical roles and widespread presence across the global ocean
Xavier Rey-Velasco, Teresa Lucena, Ana Belda, Josep M. Gasol, Olga Sánchez, David R. Arahal, María J. Pujalte
Frontiers in Microbiology.2024;[Epub] CrossRef - Ignisphaera cupida sp. nov., a hyperthermophilic hydrolytic archaeon from a hot spring of Uzon (Kamchatka), and emended description of the genus Ignisphaera
Olga A. Podosokorskaya, Alexander G. Elcheninov, Alexandra A. Klyukina, Alexander Y. Merkel
Systematic and Applied Microbiology.2024; 47(5): 126541. CrossRef - Genomic diversity in Paenibacillus polymyxa: unveiling distinct species groups and functional variability
Adrian Wallner, Livio Antonielli, Ouiza Mesguida, Patrice Rey, Stéphane Compant
BMC Genomics.2024;[Epub] CrossRef - Comparative genomic analyses of Cutibacterium granulosum provide insights into genomic diversity
Peishan Chen, Shaojing Wang, Hongyan Li, Xiaoye Qi, Yuanyuan Hou, Ting Ma
Frontiers in Microbiology.2024;[Epub] CrossRef - A new insight on the xyl upper operon revealed through genomic investigation strategy
Xuefeng Tian, Shaojing Wang, Peishan Chen, Mingbo Yang, Zhaoying Su, Yue Ming, Guoqiang Li, Ting Ma
International Biodeterioration & Biodegradation.2024; 189: 105748. CrossRef - Genome-based reclassification of Spiroplasma atrichopogonis Koerber et al. 2005 as a later heterotypic synonym of Spiroplasma mirum Tully et al. 1982
Vatsal Bhargava, Darshana Lahon, Sonal Gupta, Jasvinder Kaur, Pushp Lata
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Lysinibacillus piscis sp. nov. isolated from the gut of mottled spinefoot Siganus fuscescens
Hiyu Kanbe, Yuki Sano, Kazumori Mise, Shusei Kanie, Natsumi Ushijima, Keisuke Kawano, Minoru Kihara, Hideomi Itoh
Archives of Microbiology.2024;[Epub] CrossRef - Specific amino acid changes correlate with pathogenic flavobacteria
Vincent Gélinas, Valérie E. Paquet, Maude F. Paquet, Steve J. Charette, Antony T. Vincent
Genome.2024; 67(10): 368. CrossRef -
Aurantiacibacter flavus sp. nov. and Aurantiacibacter gilvus sp. nov., isolated from the mudflat of Suaeda japonica colonies
Sunho Park, Inhyup Kim, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Splendidivirga corallicola gen. nov., sp. nov. and Agaribacillus aureus gen. nov., sp. nov., two bacteria isolated from coral Porites lutea, and proposal of Splendidivirgaceae fam. nov.
Jin Li, Jixin Luo, Mi Li, Chenyan Wang, Siyu Hu, Kun Lu, Guanghua Wang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - The Genome of a New Halorubrum distributum Strain ICIS4 Isolated from the Culture of a Microalga Dunaliella salina
E. A. Selivanova, A. S. Balkin, Yu. A. Khlopko, V. Ya. Kataev, A. O. Plotnikov
Microbiology.2024; 93(4): 482. CrossRef - Peteryoungia algae sp. nov. isolated from seaweeds of Gouqi Island, China, and its unique genetic features among Peteryoungia strains
Jun Yin, Min He, Xiao-Xiao Liu, Chang-Bin Ren, Hou-Hong Liu, Hai Luo, Gen Chen, Ze-Fei Wang, Sanjit Chandra Debnath, Pin-Mei Wang, Hai-Xin Chen, Dao-Qiong Zheng
Antonie van Leeuwenhoek.2024;[Epub] CrossRef -
Methylomonas rivi sp. nov., Methylomonas rosea sp. nov., Methylomonas aurea sp. nov. and Methylomonas subterranea sp. nov., type I methane-oxidizing bacteria isolated from a freshwater creek and the deep terrestrial subsurface
Christopher A. Abin, Christopher T. Garner, Krithivasan Sankaranarayanan, Reid A. Sindelar, Kyrah F. Kotary, Rosa M. Garner, Samantha C. Barclay, Haiyuan Cai, Paul A. Lawson, Lee R. Krumholz
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Phylogenomic discernments into Anaerolineaceae thermal adaptations and the proposal of a candidate genus Mesolinea
Katherine Bedoya-Urrego, Juan F. Alzate
Frontiers in Microbiology.2024;[Epub] CrossRef - Unraveling the genomic secrets of Tritonibacter mobilis AK171: a plant growth-promoting bacterium isolated from Avicennia marina
Amal Khalaf Alghamdi, Sabiha Parween, Heribert Hirt, Maged M. Saad
BMC Genomics.2024;[Epub] CrossRef - Ochrobactrum chromiisoli sp. nov., Isolated from Chromium-Contaminated Soil
Yi Yang, Zhe Xu, Li Yang, Meng-yao Hu, Guang-yang Jiang, Jia Chen, Yi-chen Yang, Yongqiang Tian
Current Microbiology.2024;[Epub] CrossRef -
Spartinivicinus poritis sp. nov., a red pigment-producing bacterium isolated from a scleractinian coral Porites lutea
Sumbal Sajid, Guoqiang Zhang, Zongyao Zhang, Yishan Lu, Lianguo Chen, Lin Cai
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Tardiphaga alba sp. nov., a heavy-metal-tolerant bacterium isolated from garden soil
Zhihua Bao, Chaojun Wang, Jiahui Cao, Tingting Zhang, Yong Guo, Yoshinori Sato, Tomoyasu Nishizawa, Hiroyuki Ohta
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments
Yue Zheng, Baozhan Wang, Ping Gao, Yiyan Yang, Bu Xu, Xiaoquan Su, Daliang Ning, Qing Tao, Qian Li, Feng Zhao, Dazhi Wang, Yao Zhang, Meng Li, Mari-K H Winkler, Anitra E Ingalls, Jizhong Zhou, Chuanlun Zhang, David A Stahl, Jiandong Jiang, Willm Martens-H
The ISME Journal.2024;[Epub] CrossRef - Refining the taxonomy of the order Hyphomicrobiales (Rhizobiales) based on whole genome comparisons of over 130 type strains
George C. diCenzo, Yuqi Yang, J. Peter W. Young, Nemanja Kuzmanović
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Luteimonas flava sp. nov. and Aquilutibacter rugosus gen. nov., sp. nov., isolated from freshwater environments in China and re-examining the taxonomic status of genera Luteimonas and Lysobacter
Huibin Lu, Li Chen, Yujing Wang, Peng Xing, Qinglong Wu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Novel taxonomic and functional diversity of eight bacteria from the upper digestive tract of chicken
Bibiana Rios-Galicia, Johan S. Sáenz, Timur Yergaliyev, Christoph Roth, Amélia Camarinha-Silva, Jana Seifert
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Parendozoicomonas callyspongiae sp. nov. Isolated from a Marine Sponge, Callyspongia elongate, and Reclassification of Sansalvadorimonas verongulae as Parendozoicomonas verongulae comb. nov.
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
Current Microbiology.2024;[Epub] CrossRef -
Novel phage infecting the
Roseobacter
CHUG lineage reveals a diverse and globally distributed phage family
Zuqing Wu, Luyuan Guo, Ying Wu, Mingyu Yang, Sen Du, Jiabing Shao, Zefeng Zhang, Yanlin Zhao, Michael J. Imperiale
mSphere.2024;[Epub] CrossRef - Biochip-Based Identification of Mycobacterial Species in Russia
Danila Zimenkov, Vyacheslav Zhuravlev, Anastasia Ushtanit, Marina Filippova, Uliana Semenova, Natalia Solovieva, Maria Sviridenko, Anastasia Khakhalina, Svetlana Safonova, Marina Makarova, Elizaveta Gordeeva, Elena Guselnikova, Yakov Schwartz, Natalia Sta
International Journal of Molecular Sciences.2024; 25(23): 13200. CrossRef -
Leptothrix ochracea
genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon
Gracee K. Tothero, Rene L. Hoover, Ibrahim F. Farag, Daniel I. Kaplan, Pamela Weisenhorn, David Emerson, Clara S. Chan, Arpita Bose
Applied and Environmental Microbiology.2024;[Epub] CrossRef -
Svornostia abyssi gen. nov., sp. nov. isolated from the world’s deepest silver–uranium mine currently devoted to the extraction of radon-saturated water
Gabriela Kapinusova, Jachym Suman, Michal Strejcek, Petr Pajer, Tomas Cajthaml, Pavel Ulbrich, Meina Neumann-Schaal, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria
Wouter B. Lenferink, Theo A. van Alen, Mike S. M. Jetten, Huub J. M. Op den Camp, Maartje A. H. J. van Kessel, Sebastian Lücker
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Genome streamlining in Parcubacteria transitioning from soil to groundwater
Narendrakumar M. Chaudhari, Olga M. Pérez-Carrascal, Will A. Overholt, Kai U. Totsche, Kirsten Küsel
Environmental Microbiome.2024;[Epub] CrossRef - Sulfurospirillum diekertiae sp. nov., a tetrachloroethene-respiring bacterium isolated from contaminated soil
Huijuan Jin, Leitao Huo, Yi Yang, Yan Lv, Jingjing Wang, Julien Maillard, Christof Holliger, Frank E. Löffler, Jun Yan
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Pseudocalidococcus azoricus gen. sp. nov. (Thermosynechococcaceae, Cyanobacteria), a Rare but Widely Distributed Coccoid Cyanobacteria
Rúben Luz, Rita Cordeiro, Jan Kaštovský, Amélia Fonseca, Ralph Urbatzka, Vitor Vasconcelos, Vítor Gonçalves
Diversity.2023; 15(12): 1157. CrossRef - The identification of the new species Nitratireductor thuwali sp. nov. reveals the untapped diversity of hydrocarbon-degrading culturable bacteria from the arid mangrove sediments of the Red Sea
Ramona Marasco, Grégoire Michoud, Fatmah O. Sefrji, Marco Fusi, Chakkiath P. Antony, Kholoud A. Seferji, Alan Barozzi, Giuseppe Merlino, Daniele Daffonchio
Frontiers in Microbiology.2023;[Epub] CrossRef -
Danxiaibacter flavus gen. nov., sp. nov., a novel bacterium of the family Chitinophagaceae isolated from forest soil on Danxia Mountain
Zhuo-Huan Zheng, Chun-Yan Lu, Wen-Hui Lian, Jia-Rui Han, Fang Chen, Ting Zhou, Shuai Li, Lei Dong, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions
Jinbo Xu, Lu Wang, Weifeng Lv, Xinmin Song, Yong Nie, Xiao-Lei Wu
Frontiers in Microbiology.2023;[Epub] CrossRef - Comparative Genomics Reveal the High Conservation and Scarce Distribution of Nitrogen Fixation nif Genes in the Plant-Associated Genus Herbaspirillum
Ana Marina Pedrolo, Filipe Pereira Matteoli, Cláudio Roberto Fônseca Sousa Soares, Ana Carolina Maisonnave Arisi
Microbial Ecology.2023; 86(1): 563. CrossRef - UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction
Seong-In Na, Michael James Bailey, Mauricio Chalita, Jae Hyoung Cho, Jongsik Chun
Journal of Microbiology.2023; 61(7): 683. CrossRef -
Alkalicoccobacillus porphyridii sp. nov., isolated from a marine red alga, reclassification of Shouchella plakortidis and Shouchella gibsonii as Alkalicoccobacillus plakortidis comb. nov. and Alkalicoccobacillus gibsonii comb. nov., and emend
Kyung Hyun Kim, Dong Min Han, Jae Kyeong Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Phocaeicola oris sp. nov., an anaerobic bacterium isolated from the saliva of a patient with oral squamous cell carcinoma
Jiung-Wen Chen, Chao-Jen Shih, Li-Wha Wu, Yen-Chi Wu, Wei-Fan Chiang, Yuh-Ling Chen, Jer-Horng Wu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Methylacidiphilum caldifontis gen. nov., sp. nov., a thermoacidophilic methane-oxidizing bacterium from an acidic geothermal environment, and descriptions of the family Methylacidiphilaceae fam. nov. and order Methylacidiphilales ord. nov.
Samuel Imisi Awala, Joo-Han Gwak, Yongman Kim, Chanmee Seo, Andrea Strazzulli, Song-Gun Kim, Sung-Keun Rhee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Genome-based classification of the class Halobacteria and description of Haladaptataceae fam. nov. and Halorubellaceae fam. nov
Can Cui, Dong Han, Jing Hou, Heng-Lin Cui
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Complete genome sequence analysis of plant growth-promoting bacterium, Isoptericola sp. AK164 isolated from the rhizosphere of Avicennia marina growing at the Red Sea coast
Amal Khalaf Alghamdi, Sabiha Parween, Heribert Hirt, Maged M. Saad
Archives of Microbiology.2023;[Epub] CrossRef - Draft genome sequence of Hahella sp. CR1 and its ability in producing cellulases for saccharifying agricultural biomass
Melvin Chun Yun Tan, Muhammad Ramziuddin Zakaria, Kok Jun Liew, Chun Shiong Chong
Archives of Microbiology.2023;[Epub] CrossRef - Sedimenticola hydrogenitrophicus sp. nov. a chemolithoautotrophic bacterium isolated from a terrestrial mud volcano, and proposal of Sedimenticolaceae fam. nov. in the order Chromatiales
Galina Slobodkina, Alexander Merkel, Nataliya Ratnikova, Alexandra Kuchierskaya, Alexander Slobodkin
Systematic and Applied Microbiology.2023; 46(5): 126451. CrossRef - Comparative genomic assessment of members of genus Tenacibaculum: an exploratory study
Rohit Satyam, Shaban Ahmad, Khalid Raza
Molecular Genetics and Genomics.2023; 298(5): 979. CrossRef - Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species
Mina Bizic, Traian Brad, Danny Ionescu, Lucian Barbu-Tudoran, Luca Zoccarato, Joost W Aerts, Paul-Emile Contarini, Olivier Gros, Jean-Marie Volland, Radu Popa, Jessica Ody, Daniel Vellone, Jean-François Flot, Scott Tighe, Serban M Sarbu
The ISME Journal.2023; 17(3): 340. CrossRef -
Solicola gregarius gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with Micrococcus luteus culture supernatant
Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Alena Filipova, Petr Pajer, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Microbial Niche Differentiation during Nitrite-Dependent Anaerobic Methane Oxidation
Wen-Bo Nie, Guo-Jun Xie, Xin Tan, Jie Ding, Yang Lu, Yi Chen, Chun Yang, Qiang He, Bing-Feng Liu, Defeng Xing, Nanqi Ren
Environmental Science & Technology.2023; 57(17): 7029. CrossRef -
Allocoprobacillus halotolerans gen. nov., sp. nov and Coprobacter tertius sp. nov., isolated from human gut microbiota
Nancy M. Y. Teng, Raymond Kiu, Rhiannon Evans, David J. Baker, Christian Zenner, Stephen D. Robinson, Lindsay J. Hall
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Aridibaculum aurantiacum gen. nov., sp. nov., isolated from the Kumtag Desert soil
Lei Dong, Shuai Li, Guo-Yuan Shi, Jia-Rui Han, Chun-Yan Lu, Wen-Hui Lian, Ling-Xiang Yue, Dalal Hussien M. Alkhalifah, Wael N. Hozzein, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Acidaminococcus homini s sp. nov., Amedibacillus hominis sp. nov., Lientehia hominis gen. nov. sp. nov., Merdimmobilis hominis gen. nov. sp. nov., and Paraeggerthella hominis sp. nov., isolated from human faeces
Rashidin Abdugheni, Dan-Hua Li, Yu-Jing Wang, Meng-Xuan Du, Nan Zhou, Chang Liu, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology.2023;[Epub] CrossRef -
Vogesella aquatica sp. nov. and Vogesella margarita sp. nov., isolated from rivers in Southwest China
Huibin Lu, Li Chen, Lingyang Kong, Linpei Huang, Guangjie Chen
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Dermatobacter hominis gen. nov., sp. nov., a new member of the family Iamiaceae, revealed the potential utilisation of skin-derived metabolites
HyungWoo Jo, Chaeyun Baek, Young Mok Heo, Hye-Been Kim, Haeun Lee, Seunghyun Kang, Seyoung Mun, Yunseok Oh, Doyeong Ko, Kyudong Han, Raúl Riesco, Martha E. Trujillo, Dong-Geol Lee
Antonie van Leeuwenhoek.2023; 116(11): 1139. CrossRef - Dynamic Development of Viral and Bacterial Diversity during Grass Silage Preservation
Johan S. Sáenz, Bibiana Rios-Galicia, Bianca Rehkugler, Jana Seifert
Viruses.2023; 15(4): 951. CrossRef -
Alteromonas gilva sp. nov. and Erythrobacter fulvus sp. nov., isolated from a tidal mudflat
Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Two novel alkalitolerant species Pseudalkalibacillus spartinae sp. nov. and Pseudalkalibacillus sedimenti sp. nov.
Guo-Hong Liu, Shuang Han, Bing Li, Rui-Li Li, Huai Shi, Qian-Qian Chen, Hend A. Alwathnani, Christopher Rensing, Shun-Gui Zhou
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Brachybacterium sillae sp. nov., a thermophilic bacterium isolated from a hot spring
Dariimaa Ganbat, DoKyung Oh, Yong-Jik Lee, Dong-Woo Lee, Seong-Bo Kim, Won-Jae Chi, Ki-Eun Lee, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
Antonie van Leeuwenhoek.2023; 116(8): 791. CrossRef -
Bacillus mexicanus sp. nov., a biological control bacterium isolated from the common bean (Phaseolus vulgaris L.) crop in Sinaloa, Mexico
Sergio de los Santos Villalobos, Carmen María Félix Pablos, Valeria Valenzuela Ruiz, Fannie I. Parra Cota
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Genome-centric metagenomic insights into the role of Chloroflexi in anammox, activated sludge and methanogenic reactors
Patricia Bovio-Winkler, Leandro D. Guerrero, Leonardo Erijman, Pía Oyarzúa, María Eugenia Suárez-Ojeda, Angela Cabezas, Claudia Etchebehere
BMC Microbiology.2023;[Epub] CrossRef - Potential for homoacetogenesis via the Wood–Ljungdahl pathway in Korarchaeia lineages from marine hydrothermal vents
Francesca Vulcano, Petra Hribovšek, Emily Olesin Denny, Ida H. Steen, Runar Stokke
Environmental Microbiology Reports.2023; 15(6): 698. CrossRef - Isolation and characterisation of novel Methanocorpusculum species indicates the genus is ancestrally host-associated
James G. Volmer, Rochelle M. Soo, Paul N. Evans, Emily C. Hoedt, Ana L. Astorga Alsina, Benjamin J. Woodcroft, Gene W. Tyson, Philip Hugenholtz, Mark Morrison
BMC Biology.2023;[Epub] CrossRef -
Thermomonas mangrovi sp. nov., isolated from soil of a mangrove nature reserve
Shanshan Xu, Junpeng Chen, Si Chen, Qiliang Lai, Zengzhi Liu, Ying Xu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Proposal to transfer Bacillus massiliigorillae to the genus Peribacillus as Peribacillus massiliigorillae comb. nov., and Bacillus sinesaloumensis to the genus Ferdinandcohnia as Ferdinandcohnia sinesaloumensis comb. nov
Awalagaway Dhulappa, Manik Prabhu Narsing Rao, Haijie Wang, Bhagwan Narayan Rekadwad, Ying-Qian Kang
Archives of Microbiology.2023;[Epub] CrossRef - Characterization and Antioxidant Activity of Exopolysaccharides Produced by Lysobacter soyae sp. nov Isolated from the Root of Glycine max L.
Inhyup Kim, Geeta Chhetri, Yoonseop So, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo
Microorganisms.2023; 11(8): 1900. CrossRef - Leucobacter edaphi sp. nov., a highly chromate-tolerant bacterium isolated from chromium containing chemical plant soil
Bijun Zheng, Zhe Xu, Li Yang, Guangyang Jiang, Jia Chen, Yichen Yang, Yongqiang Tian
Antonie van Leeuwenhoek.2023; 116(12): 1433. CrossRef -
Roseateles albus sp. nov., Roseateles koreensis sp. nov. and Janthinobacterium fluminis sp. nov., isolated from freshwater at Jucheon River, and emended description of Roseateles aquaticus comb. nov.
Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Isolation and Genomic Analysis of 3-Chlorobenzoate-Degrading Bacteria from Soil
Ifat Ara, Ryota Moriuchi, Hideo Dohra, Kazuhide Kimbara, Naoto Ogawa, Masaki Shintani
Microorganisms.2023; 11(7): 1684. CrossRef - Brytella acorum gen. nov., sp. nov., a novel acetic acid bacterium from sour beverages
Atena Sadat Sombolestani, Dries Bongaerts, Eliza Depoorter, Ilse Cleenwerck, Anneleen D. Wieme, Scott J. Britton, Stefan Weckx, Luc De Vuyst, Peter Vandamme
Systematic and Applied Microbiology.2023; 46(5): 126440. CrossRef - Complete genome sequence of Vibrio gazogenes PB1: an estuarine bacterium capable of producing prodigiosin from starch or cellulose
Bincy Baby, Dhanya Vijay, Pretty S. Philip, Afra A. Alnuaimi, Hessa M. Almansoori, Sarah O. Areidat, Gulfaraz Khan, Ranjit Vijayan, M. Kalim Akhtar
Frontiers in Marine Science.2023;[Epub] CrossRef -
Tianweitania aestuarii sp. nov., isolated from a coastal dune, reclassification of Corticibacterium populi as Tianweitania populi comb. nov., and emended description of the genus Tianweitania
Ji Hyeon Song, Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Fluviispira vulneris sp. nov., isolated from human wound secretions
Peijuan Tang, Na Peng, Pengwen Ouyang, Sheng Long, Zhenhua Wei, Xingchun Chen, Pinghua Qu, Liangyi Xie
Antonie van Leeuwenhoek.2023; 116(12): 1305. CrossRef -
Neorhizobium turbinariae sp. nov., a coral-beneficial bacterium isolated from Turbinaria peltata
Hao Sun, Zhiyuan Miao, Shuai Liu, Xuerui Liu, Bogui Chen, Baolin Liao, Baohua Xiao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Salinimicrobium tongyeongense sp. nov., isolated from seawater
Dariimaa Ganbat, Dong-Woo Lee, Seong-Bo Kim, Yong-Jik Lee, Gaewon Nam, Won-Jae Chi, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Genomic analysis and characterization of phages infecting the marine Roseobacter CHAB-I-5 lineage reveal a globally distributed and abundant phage genus
Zefeng Zhang, Zuqing Wu, He Liu, Mingyu Yang, Rui Wang, Yanlin Zhao, Feng Chen
Frontiers in Microbiology.2023;[Epub] CrossRef - PhaGAA: an integrated web server platform for phage genome annotation and analysis
Jiawei Wu, Qingrui Liu, Min Li, Jiliang Xu, Chen Wang, Junyin Zhang, Minfeng Xiao, Yannan Bin, Junfeng Xia, Can Alkan
Bioinformatics.2023;[Epub] CrossRef - Comparative Genomics Reveals Three Genetic Groups of the Whitefly Obligate Endosymbiont Candidatus Portiera aleyrodidarum
Teng Lei, Ning Luo, Chao Song, Junwei Yu, Yuhang Zhou, Xin Qi, Yinquan Liu
Insects.2023; 14(11): 888. CrossRef -
Roseobacter insulae sp. nov. and Loktanella gaetbuli sp. nov., isolated from tidal flats in the Yellow Sea in Korea
Eun Bee Lee, Sooyeon Park, Wonyong Kim, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Novosphingobium mangrovi sp. nov., isolated from mangrove sediment
Qian Huang, Zhihui Qian, Tao Peng, Jin Li, Xueying Ye, Tongwang Huang, Zhong Hu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Phylotaxonomic assessment based on four core gene sets and proposal of a genus definition among the families Paracoccaceae and Roseobacteraceae
Dao-Feng Zhang, Wei He, Zongze Shao, Iftikhar Ahmed, Yuqin Zhang, Wen-Jun Li, Zhe Zhao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil
Sophie Mieszkin, Blandine Trouche, Julien Ancousture, Youssef Raouf, Stéphane Uroz, Karine Alain
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Comammox
Nitrospira
and Ammonia-Oxidizing Archaea Are Dominant Ammonia Oxidizers in Sediments of an Acid Mine Lake Containing High Ammonium Concentrations
Deyong Li, Zhichang Ren, Yangqi Zhou, Lugao Jiang, Min Zheng, Guoqiang Liu, Jennifer B. Glass
Applied and Environmental Microbiology.2023;[Epub] CrossRef - Citrobacter sp. Y3 harbouring novel gene HBCD-hd-1 mineralizes hexabromocyclododecane via new metabolic pathways according to multi-omics characterization
Xingxing Peng, Tianyu Li, Qihang Zheng, Yingyuan Lu, Yuzhe He, Yetao Tang, Rongliang Qiu
Journal of Hazardous Materials.2023; 442: 130071. CrossRef -
Opacimonas viscosa gen. nov., sp. nov., a novel bacterium isolated from phycosphere
Xuanru Lin, Runlin Cai, Guanjing Cai, Jianmin Xie, Zhenyuan Zhou, Hui Wang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Microbacterium neungamense sp. nov. isolated from a hot spring
Dariimaa Ganbat, Ga Eul Jeong, DoKyung Oh, Dong-Woo Lee, Yong-Jik Lee, Seong-Bo Kim, In-Tae Cha, Won-Jae Chi, Seul-Ki Park, Jung-Sook Lee, Sang-Jae Lee
Archives of Microbiology.2023;[Epub] CrossRef - Habitat distribution of the genus Belliella in continental waters and the description of Belliella alkalica sp. nov., Belliella calami sp. nov. and Belliella filtrata sp. nov.
Kristóf Korponai, Sára Szuróczki, Zsuzsanna Márton, Attila Szabó, Paula V. Morais, Diogo Neves Proença, Erika Tóth, Emil Boros, Károly Márialigeti, Tamás Felföldi
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Molecular Characterization of Indigenous Rhizobia from Kenyan Soils Nodulating with Common Beans
Clabe Wekesa, Kelvin Kiprotich, Patrick Okoth, George O. Asudi, John O. Muoma, Alexandra C. U. Furch, Ralf Oelmüller
International Journal of Molecular Sciences.2023; 24(11): 9509. CrossRef - Putative novel hydrogen- and iron-oxidizing sheath-producing Zetaproteobacteria thrive at the Fåvne deep-sea hydrothermal vent field
Petra Hribovšek, Emily Olesin Denny, Håkon Dahle, Achim Mall, Thomas Øfstegaard Viflot, Chanakan Boonnawa, Eoghan P. Reeves, Ida Helene Steen, Runar Stokke, Michael S. Rappe
mSystems.2023;[Epub] CrossRef - Thiovibrio frasassiensis gen. nov., sp. nov., an autotrophic, elemental sulphur disproportionating bacterium isolated from sulphidic karst sediment, and proposal of Thiovibrionaceae fam. nov.
Heidi S. Aronson, Cais Thomas, Maia K. Bhattacharyya, Shaan R. Eckstein, Sophia R. Jensen, Roman A. Barco, Jennifer L. Macalady, Jan P. Amend
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Hufsiella ginkgonis gen. nov., sp. nov. and Hufsiella arboris sp. nov., isolated from tree barks
Heeyoung Kang, Seokhyeon Bae, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Phenotypic and genomic characterization of the first alkaliphilic aceticlastic methanogens and proposal of a novel genus Methanocrinis gen.nov. within the family Methanotrichaceae
Maria A. Khomyakova, Alexander Y. Merkel, Alexander I. Slobodkin, Dimitry Y. Sorokin
Frontiers in Microbiology.2023;[Epub] CrossRef - Description of Xanthocytophaga agilis sp. nov. and Xanthocytophaga flavus sp. nov. of the new genus Xanthocytophaga gen. nov and the proposal of Rhodocytophagaceae fam. nov. within the order Cytophagales
Xianjiao Zhang, Guang-Da Feng, Yang Liu, Fan Yang, Yanxuan Li, Xiaoqin Deng, Honghui Zhu, Qing Yao
Archives of Microbiology.2023;[Epub] CrossRef - Draft genome sequence of Joostella atrarenae M1-2T with cellulolytic and hemicellulolytic ability
Kok Jun Liew, Muhammad Ramziuddin Zakaria, Clarine Wan Ling Hong, Melvin Chun Yun Tan, Chun Shiong Chong
3 Biotech.2023;[Epub] CrossRef - Transcriptional Landscapes of Herelleviridae Bacteriophages and Staphylococcus aureus during Phage Infection: An Overview
Maria Kornienko, Dmitry Bespiatykh, Roman Gorodnichev, Narina Abdraimova, Egor Shitikov
Viruses.2023; 15(7): 1427. CrossRef -
Tenacibaculum tangerinum sp. nov., isolated from a tidal flat sediment
Sang Hyun Lee, Yeonjae Yoo, Dae Young Kwon, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Jae-Jin Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Mesonia aestuariivivens sp. nov., isolated from a tidal flat
Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
Archives of Microbiology.2022;[Epub] CrossRef - Metabacillus rhizolycopersici sp. nov., Isolated from the Rhizosphere Soil of Tomato Plants
Rong Ma, Shan-Wen He, Xing Wang, Kyu Kyu Thin, Ji-Gang Han, Xiao-Xia Zhang
Current Microbiology.2022;[Epub] CrossRef - Longitalea arenae gen. nov., sp. nov. and Longitalea luteola sp. nov., two new members of the family Chitinophagaceae isolated from desert soil
Shuai Li, Lei Dong, Jia-Rui Han, Guo-Yuan Shi, Chun-Yan Lu, Lu Xu, Wen-Hui Lian, Dalal Hussien M. Alkhalifah, Wael N. Hozzein, Wen-Jun Li
Archives of Microbiology.2022;[Epub] CrossRef - Description of Deefgea piscis sp. nov., and Deefgea tanakiae sp. nov., isolated from the gut of Korean indigenous fish
Do-Hun Gim, So-Yeon Lee, Jeong Eun Han, Jae-Yun Lee, Seo Min Kang, Jin-Woo Bae
Journal of Microbiology.2022; 60(11): 1061. CrossRef -
Fibrella aquatilis sp. nov., Fibrella rubiginis sp. nov. and Fibrella forsythiae sp. nov., isolated from freshwater, rusty iron and forsythia flower
Heeyoung Kang, Haneul Kim, Seokhyeon Bae, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Pedomonas mirosovicensis gen. nov., sp. nov., a bacterium isolated from soil with the aid of Micrococcus luteus culture supernatant containing resuscitation-promoting factor
Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Petr Pajer, Jacqueline Wolf, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Psychroflexus curvus sp. nov., Psychroflexus longus sp. nov. and Psychroflexus montanilacus sp. nov., isolated from salt lakes on the Tibetan Plateau
Huibin Lu, Peixin Gao, Dorji Phurbu, Qinglong Wu, Peng Xing
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
(Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed
Gemmatimonadota
Xiaowei Zheng, Xin Dai, Yaxin Zhu, Jian Yang, Hongchen Jiang, Hailiang Dong, Li Huang, Steven J. Hallam
mSystems.2022;[Epub] CrossRef - Complete Genome Sequence of Weissella cibaria NH9449 and Comprehensive Comparative-Genomic Analysis: Genomic Diversity and Versatility Trait Revealed
Komwit Surachat, Duangporn Kantachote, Monwadee Wonglapsuwan, Arnon Chukamnerd, Panchalika Deachamag, Pimonsri Mittraparp-arthorn, Kongpop Jeenkeawpiam
Frontiers in Microbiology.2022;[Epub] CrossRef - Sulfuricystis multivorans gen. nov., sp. nov. and Sulfuricystis thermophila sp. nov., facultatively autotropic sulfur-oxidizing bacteria isolated from a hot spring, and emended description of the genus Rugosibacter
Hisaya Kojima, Miho Watanabe, Naoyuki Miyata, Manabu Fukui
Archives of Microbiology.2022;[Epub] CrossRef - Draft genome sequence of Thermovorax subterraneus 70BT, a thermophile isolated from a geothermally active underground mine that produces hydrogen
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- UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction
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Seong-In Na , Yeong Ouk Kim , Seok-Hwan Yoon , Sung-min Ha , Inwoo Baek , Jongsik Chun
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J. Microbiol. 2018;56(4):280-285. Published online February 28, 2018
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DOI: https://doi.org/10.1007/s12275-018-8014-6
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Abstract
PDF
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Genome-based phylogeny plays a central role in the future
taxonomy and phylogenetics of Bacteria and Archaea by
replacing 16S rRNA gene phylogeny. The concatenated core
gene alignments are frequently used for such a purpose. The
bacterial core genes are defined as single-copy, homologous
genes that are present in most of the known bacterial species.
There have been several studies describing such a gene set, but
the number of species considered was rather small. Here we
present the up-to-date bacterial core gene set, named UBCG,
and software suites to accommodate necessary steps to generate
and evaluate phylogenetic trees. The method was successfully
used to infer phylogenomic relationship of Escherichia
and related taxa and can be used for the set of genomes at any
taxonomic ranks of Bacteria. The UBCG pipeline and file
viewer are freely available at https://www.ezbiocloud.net/
tools/ubcg and https://www.ezbiocloud.net/tools/ubcg_viewer,
respectively.
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Lixuan Ma, Xun Liu, Karine Alain, Di Wang, Xiqiu Han, Zongze Shao, Xiang Zeng
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Chitinimonas violaceus sp. nov., a violacein-producing and floc-forming bacterium isolated from the activated sludge of a municipal sewage treatment plant in Zhuhai, China
Yan Huang, Yaqi Liu, Ansi Jiang, Yong Zhang, Diao Jiao, Xin Wang, Wei Li, Haiyan Zeng, Dongru Qiu
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Sphingomonas mangrovi sp. nov., Isolated from Leaves of Aegiceras corniculatum
Pengyu Wang, Suyun Fang, Yanyan Huang, Xiaoke Hu
Current Microbiology.2026;[Epub] CrossRef - Bradyrhizobium dasycarpae sp. nov. a novel rhizobial species lacking canonical nod genes, isolated from the Moroccan endemic legume Retama dasycarpa
Mouad Lamrabet, Kaoutar Kaddouri, Zohra Chaddad, Soufiane Alami, Omar Bouhnik, Hanaa Abdelmoumen, Bacem Mnasri, Pierre-Emmanuel Courty, Mustapha Missbah El Idrissi
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Using the SeqCode to validate the names of reclassified lineages of rhizobia and agrobacteria
Melandré van Lill, Emma T. Steenkamp, Marike Palmer, Chrizelle W. Beukes, Stephanus N. Venter
Systematic and Applied Microbiology.2026; 49(4): 126720. CrossRef -
Galbibacter kalidii sp. nov., a flexirubin-type pigment-producing bacterium, isolated from saline soil in Xinjiang
Yin Huang, Yibo Yuan, Jinbiao Ma, Rashidin Abdugheni, Man Cai, Yongxia Wang, Wen-Jun Li, Li Li
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Three novel bacterial species isolated from plasma-treated soil: Hymenobacter plasmatis sp. nov., Flavitalea plasmicola sp. nov. and Mucilaginibacter tolerans sp. nov.
Seona Park, M. K. Kim, S. Srinivasan
Antonie van Leeuwenhoek.2026;[Epub] CrossRef - A comprehensive genome-centred taxonomy for agrobacteria and rhizobia in the Bartonellaceae and Rhizobiaceae families
Melandré van Lill, Stephanus N. Venter, Marike Palmer, Chrizelle W. Beukes, Emma T. Steenkamp
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - A novel Sinomonas strain and Its genus-wide genomic insights into plant growth-promoting potential
Hangtao Wu, Yusheng Lu, Kaizhi Xie, Chong Liu, Changmin Zhou, Dan Wang, Kun Zhang, Yaying Li, Lili Sun, Chaohong Shi, Huanlong Peng, Jiexin Zhang, Wenjie Gu
BMC Microbiology.2026;[Epub] CrossRef - Screening and genomic identification of the bacterial pathogens from an apple orchard in Kazakhstan
Valeriya Kostyukova, Alexandr Pozharskiy, Gulnaz Nizamdinova, Ainur Khalilayeva, Aisha Taskuzhina, Dilyara Gritsenko
PeerJ.2026; 14: e21078. CrossRef - Improving plant salt tolerance using the endophytic halophile Vreelandella salis sp. nov.
Yuxin Peng, Jiyoung Lee
Plant Physiology and Biochemistry.2026; 237: 111492. CrossRef -
Acinetobacter uliginosus sp. nov. and Acinetobacter halobius sp. nov. isolated from soil
Cong-Guo Ran, Feng-Lan Liu, Tong Wu, Rashidin Abdugheni, Nan Zhou, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Fungal fusaric acid triggers a conserved siderophore-based defense strategy in Bacillus velezensis
Yarui Wei, Zhenhe Su, Xiaomeng Liu, Shaojing Mo, Xiuye Chen, Shezeng Li, Lemeng Dong, Guoliang Qian, Qinggang Guo, Ping Ma
Journal of Integrative Agriculture.2026;[Epub] CrossRef - Isolation and Characterization of Pseudooceanicola aestuariicola sp. nov., from Tidal-Flat Sediments
Ayesha Rehman, Shahzadi Raheela Anum, Naureen Khalid, Keun-Hyeok Yang, Suk Chan Lee, Sathiyaraj Srivansan, Sang Seob Lee
Current Microbiology.2026;[Epub] CrossRef - Chryseobacterium amylolyticum sp. nov., a potential plant growth-promoting bacterium isolated from the rind of Hami melon
Jiali Li, Yang Zhou, Yinfeng Liu, Qing Yao, Huaping Li, Guangda Feng, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Phylogenomic and phenotypic investigations of Terrisphaera buseokensis gen. nov., sp. nov., a verrucomicrobium isolated from riverside soil
Jaewoo Yoon, Seong-Ryong Lee, Sanghwa Park
Antonie van Leeuwenhoek.2026;[Epub] CrossRef -
Metabacillus harenarius sp. nov., an alginate lyase-producing bacterium, and reclassification of ‘Bacillus weihaiensis’
Rongting Liang, Kunlian Mo, Zhuobing Zhao, Yonghua Hu, Zheng Zhang, Mingguo Jiang, Huiqin Huang
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Efficient Biodegradation of Cefixime by the Newly Isolated Strain Pseudochrobactrum asaccharolyticum TY12 and Insights into Its Degradation Mechanism
Boxiang Kou, Zexun Wang, Yujia Wang, Meng Shen, Zhaoyi Zheng, Yecheng Gao, Dan Ma, Sijun Dong
Journal of Agricultural and Food Chemistry.2026; 74(26): 20581. CrossRef - Comparative genomics and taxonomic characterization of Streptomyces diversicolor sp. nov.: a novel species exhibiting intraspecific genomic divergence and biotechnological potential
Wissarut Srisakvarangkool, A'liyatur Rosyidah, Montri Yasawong, Chanwit Suriyachadkun, Nittaya Pitiwittayakul, Phongsakorn Ganta, Somboon Tanasupawat, Nawarat Nantapong
Systematic and Applied Microbiology.2026; 49(4): 126737. CrossRef - Think pink 2.0 - Description of Roseobacter cerffii sp. nov., isolated from the chromerid alga Vitrella brassicaformis, and reclassification of Sulfitobacter sabulilitoris as Billmartinia sabulilitoris, gen. nov., comb. nov.
Jörn Petersen, Victoria Ringel, Orsola Päuker, Anja Frühling, Manfred Rohde, Michael Jarek, Cathrin Spröer, Boyke Bunk, Katharina Huber-Fischer, Silke Pradella, Heike M. Freese, Julia Koblitz, Meina Neumann-Schaal, Henner Brinkmann
Systematic and Applied Microbiology.2026; 49(4): 126731. CrossRef - Ornithinibacillus liuyingii sp. nov.: a novel multidrug-resistant and potentially pathogenic bacterium isolated from Apodemus chevrieri lung tissue
Jian Zhou, Tao Gu, Ya Zhang, Jingzhu Zhou, Xiaoxiao Zeng, Fengming Chen, Yong Hu, Shijun Li
BMC Microbiology.2026;[Epub] CrossRef - Functional Insights of the Genus Trinickia, and Description of a Novel Species Trinickia camelliae sp. nov., Isolated from Rhizosphere Soil of Camellia oleifera
Chunling Wang, Lutian Mao, Fangyu Liang, Miaoling Lai, Yuting Huang, Renjie Li
Current Microbiology.2026;[Epub] CrossRef - Copper availability controls niche differentiation between comammox Nitrospira and ammonia-oxidizing bacteria
Kazuyoshi Koike, Garrett J Smith, Nao Okuda, Ryoma Konno, Shizuka Watanabe, Yoshihito Kusunoki, Shuji Kawakami, Theo A van Alen, Maartje A H J van Kessel, Ryoko Yamamoto-Ikemoto, Sebastian Lücker, Norihisa Matsuura
ISME Communications.2026;[Epub] CrossRef - Characterization of Marinibium conchae gen. nov. sp. nov., a novel psychrotolerant mesophilic bacterium from mussels
Young-Mi Lee, Jaincy N. Jayan, Ha-Jung Moon, Suk-Chan Lee, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Paenibacillus tabacirhizosphaerae sp. nov., isolated from rhizosphere soil of tobacco
Xiu-Ming Liu, Xing-Kui Zhou, Wen-Jun Li, Martha E. Trujillo, Maite Ortúzar, Li Gao, Yuan-Dong Li, Rui-Lin Hu, Gang Du, Yan-Qing Duan
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Four novel Pseudoalteromonas species isolated from seawater: Pseudoalteromonas mucoides sp. nov., Pseudoalteromonas aquimarina sp. nov., Pseudoalteromonas maris sp. nov. and Pseudoalteromonas thalassia sp. nov.
Inhyup Kim, Sunho Park, Chunghwan Baek, Seunghui Kwak, Haejin Woo, Hyunji Lee, Subin Yook, Jisu Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Description of two novel species, Celerinatantimonas sediminis sp. nov. and Celerinatantimonas marina sp. nov., isolated from a mangrove ecosystem
Yaping Du, Qiliang Lai, Guangyu Li, Jianning Wang, Xiupian Liu, Zongze Shao, Guizhen Li
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Whole genome sequence data of a cellulose degrading bacterium, Bacillus sp. ABR isolated from the soils of Kurseong, India
Binoy Kumar Show, Tushar Lodha, Anudeb Ghosh, Prashant Dhakephalkar, Andrew B. Ross, Shibani Chaudhury, Srinivasan Balachandran
Data in Brief.2026; 68: 113090. CrossRef - The van Niel international prize for studies in bacterial systematics, awarded in 2026 to Jon Jongsik Chun
Iain C. Sutcliffe, Edward R. B. Moore, Aharon Oren
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Isolation and Taxonogenomic Analysis of Aliiroseovarius pontivivens sp. nov., a Novel Marine Alphaproteobacterium
Jaewoo Yoon, Ji Hoon Oh
Microbiology.2026; 95(4): 576. CrossRef - Pseudoalteromonas nanhaiensis sp. nov., a Novel Bacterium Isolated from South China Sea
Dan-Yuan Guo, Wen-Li Liu, Hong-Chuan Wang, Sen-Hua Chen, Lan Liu, Zi-Wen Yang, Lei Dong, Wen-Jun Li
Current Microbiology.2026;[Epub] CrossRef - Genomic sequencing of vineyard-isolated Bacillus strains and comparison with closely related Bacillus species reveals a putative new lineage, distinct pan-genome architecture and secondary metabolism potential
Adeoye J. Kayode, Edwin I. Wanjofu, Mathabatha Evodia Setati
Frontiers in Microbiology.2026;[Epub] CrossRef - Parasedimentitalea nitratireducens sp. nov., a Novel Nitrate-Reducing Bacterium Isolated from the Yellow Sea
Yanjiao Zhang, Xinyu Liu, Hao Yu, Xiuqing Yang
Microorganisms.2026; 14(8): 1706. CrossRef - From CRISPR–Cas to Argonautes: Defense systems of bacteria and archaea in the hydrothermal deep subsurface
Lei Su, Paraskevi Mara, Virginia Edgcomb, Andreas Teske
ISME Communications.2026;[Epub] CrossRef - Characterization of gut microbiome signatures in metabolic dysfunction associated steatotic liver disease
Yuyang Ma, Min Yang, Andi Xu, Xueni Zhao, Xiao Dong, Wenyuan Li, Huakang Tu, Yi Guo, Zhengya Song, Xifeng Wu
npj Biofilms and Microbiomes.2026;[Epub] CrossRef -
Pseudoneobacillus rhizolycopersici sp. nov., a novel multifunctional rhizobacterium for the biocontrol of tomato bacterial wilt
Shengfeng Pan, Zengwei Feng, Meng Chen, Xiaolin Xie, Qing Yao, Ming-Rong Deng, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Delineation of Paraburkholderia tuberum and description of Paraburkholderia lebeckiae sp. nov. isolated from the root nodules of South African Lebeckia ambigua
Lazarus Mavima, Emma T. Steenkamp, Tolu O. Soogun, Chrizelle W. Beukes, Marike Palmer, William B. Whitman, John Howieson, Ron Yates, Euan K. James, Sofie E. De Meyer, Martin P.A. Coetzee, Stephanus N. Venter
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Type III secretion system diversity in the Pseudomonas fluorescens species complex
Kai‐Ji Liao, Yuan Luo, Qiguo Zhuang, Hai‐Lei Wei
New Phytologist.2026; 252(2): 779. CrossRef - Dyella cornirhiza sp. nov., a Maize Rhizosphere Bacterium with Diverse Biosynthetic Potential
Ying Li, Lei Shen, Miaomiao An, Xuming Wang, Guozhu Zhao, Tianlei Qiu
Microorganisms.2026; 14(9): 1943. CrossRef - Dechloromonas parva sp. nov., a Member of the Family Azonexaceae
Min-gyung Baek, Ji-Hyeon Son, Hana Yi, Sangcheol Park
Journal of Microbiology and Biotechnology.2026;[Epub] CrossRef - Proposal of three novel species of the family Xanthobacteraceae: Xanthobacter pollutisoli sp. nov., Xanthobacter luteus sp. nov. and Aquabacter albus sp. nov., isolated from oil-contaminated soils
Thi Tuyet Nhan Le, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Genomic evidence that Shouchella miscanthi (Shin et al. 2020) Joshi et al. 2022 is a later heterotypic synonym of Shouchella hunanensis (Patel and Gupta 2020) Joshi et al. 2022
Qing Liu, Lei-Lei Yang, Guo-Qing Zhang, Yu-Hua Xin
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Streptomyces xingningensis sp. nov. and Streptomyces rhizosphaerae sp. nov. isolated from the rhizosphere soil of Camellia oleifera
Chunling Wang, Jiankun Yi, Qiulan Zeng, Lutian Mao, Jinyu Liao, Huier Lin, Xinjian Xv, Jiaxin Zhuo, Gegen Bao
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Genome Analysis of Halomonas sp. 0522KB3.1, a Marine Bacterium Isolated from the Brown Alga Sargassum mcclurei, Reveals Potential for Fucoidan Modification
Hong Hanh Hoang, Vo Thi Dieu Trang, Ngoc Tung Quach, Vy Ha Nguyen Tran, Thuan Thi Nguyen, Tran Van Huynh, Huynh Hoang Nhu Khanh, Tran Thi Thanh Van, Pham Duc Thinh, Quyet Tien Phi, Thi Hanh Nguyen Vu, Hang Thi Thuy Cao
Microbiology.2026; 95(5): 773. CrossRef - Taxonomic characterization and secondary metabolic profiling of three novel species of the genus Kinneretia isolated from crater Lake water
Zi-Xuan Liu, You-Jun Liao, Ya-Jing Yu, Ai-Hua Li
Systematic and Applied Microbiology.2026; 49(6): 126770. CrossRef - Leifsonia araucanica sp. nov., isolated from nodules of Lupinus luteus and reclassification of Leifsonia naganoensis as a later heterotypic synonym of Leifsonia aquatica
Grace Armijo-Godoy, Luis Cottet, Annally Rupayan, Makarena Carrasco, Daniela Levicoy, Haroldo Salvo-Garrido
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Pseudooceanicola aquaeponti sp. nov. and Pseudooceanicola profundi sp. nov., two novel species isolated from seawater samples of the western Pacific Ocean
Zhijie Xu, Yangjie Lin, Xi Liang, Kai Zhang, Minghuang Ling, Xiupian Liu, Qiliang Lai, Zhuhua Luo
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Genome-based analyses of the genus Frateuria: proposal of the two novel genera Parafrateuria gen. nov., Pseudofrateuria gen. nov., and the identification of Pseudofrateuria alba sp. nov., Pseudofrateuria humi sp. nov., and Pseudofrateuria lycopersici sp.
Honghong Dong, Yang Liu, Xiaolin Xie, Qian Yang, Liangqiu Li, Honghui Zhu, Ming-Rong Deng
Systematic and Applied Microbiology.2026; 49(6): 126774. CrossRef - Aquimarina ulvae sp. nov. and Polaribacter litoreus sp. nov., isolated from the green alga Ulva prolifera
Sylvia Kristyanto, Jiyoung Woo, Keun-Hyung Choi
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Deciphering the genomic and functional basis of virulence and immune modulation in Pantoea stewartii
Jianying Liu, Na Peng, Xiaoxia Zhang, Hai-Lei Wei
Frontiers in Microbiology.2026;[Epub] CrossRef -
Flavobacterium xizangense sp. nov. and Flavobacterium erigeronis sp. nov. isolated from the rhizosphere soil of Erigeron canadensis, Tibet, China
Yijun Li, Fu Yang, Linmin Zhang, Shanjun Wei, Xiaoxia Zhang, Haisheng Wang
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Riboswitch-targeted improvement of lysine production in Bacillus and Priestia species
Tessa S. Canoy, Pablo Atienza Lopez, Emma S. Wiedenbein, Helga Sato, Frej Larsen, Eoghan T. Reilly, Stefan E. Seemann, Jan Gorodkin, Lene Jespersen, Dennis S. Nielsen
npj Science of Food.2026;[Epub] CrossRef -
Pantoea citricola sp. nov. and Pantoea folii sp. nov., two bacteria with plant-growth-promoting traits isolated from the phyllosphere of honey pomelo (Citrus maxima)
Jun Zhang, Xiang Rong, Qingying Chen, Jiali Li, Guang-Da Feng, Honghui Zhu, Songzhen Yang
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - kamino: fast proteome-wide variant calling for amino acid phylogenomics
Romain Derelle, John Lees, Leonid Chindelevitch, Daniel Falush
Molecular Biology and Evolution.2026;[Epub] CrossRef - Unveiling novel antimicrobial peptides from the ruminant gastrointestinal microbiomes: A deep learning-driven approach yields an anti-MRSA candidate
Hong Shen, Yanru Li, Qingjie Pi, Junru Tian, Xianghan Xu, Zan Huang, Jinhu Huang, Cong Pian, Shengyong Mao
Journal of Advanced Research.2025; 77: 821. CrossRef - Altererythrobacter arenosus sp. nov., Isolated from Marine Sediment
Soyeon Ahn, Yunjeong Lee, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
Current Microbiology.2025;[Epub] CrossRef - A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion
Clelton A. Santos, Mariana A. B. Morais, Fernanda Mandelli, Evandro A. Lima, Renan Y. Miyamoto, Paula M. R. Higasi, Evandro A. Araujo, Douglas A. A. Paixão, Joaquim M. Junior, Maria L. Motta, Rodrigo S. A. Streit, Luana G. Morão, Claudio B. C. Silva, Luci
Nature.2025; 639(8056): 1076. CrossRef -
Paenibacillus zeirhizosphaerae sp. nov., isolated from surface of the maize (Zea mays) roots in a horticulture field, Hungary
Dalma Márton, Milán Farkas, Anna Bedics, Erika Tóth, András Táncsics, Károly Bóka, Gergely Maróti, Erzsébet Baka, Balázs Kriszt, Mátyás Cserháti
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Characterisation of Aequorivita ciconiae sp. nov., isolated from oriental stork, Ciconia boyciana
Jeong-Eun Han, Seomin Kang, So-Yeon Lee, Jin-Woo Bae
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Genomic insights into Marinospirillum alkalitolerans sp. nov., a novel PHB producing bacterium from an Indian impact crater, and an emended description of family Oceanospirillaceae
Amaraja Joshi, Sonia Thite, Devika Godbole, Dibyajyoti Boruah, Dev Kant Sindhu, Atharva Prabhu, Neetha Joseph, Amit Yadav, Avinash Sharma, Tushar Lodha
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Cerasicoccus fimbriatus sp. nov., isolated from the mid-ridge of the Southwest Indian Ocean
Xuanyun Qiu, Beihan Chen, Dan Lin, Guohua Liu, Zhiyi Su, Mingzhe Zhang, Kai Tang
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Thiobacillus sedimenti sp. nov., a chemolithoautotrophic sulphur-oxidizing bacterium isolated from freshwater sediment
Chenming Dai, Guangye Zhang, Weitie Lin, Jianfei Luo
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Arvimicrobium flavum gen. nov., sp. nov., A Novel Genus in the Family Phyllobacteriaceae Isolated From Forest Soil
Hyosun Lee, Dhiraj Kumar Chaudhary, Ki-Eun Lee, In-Tae Cha, Won-Jae Chi, Sunho Park, Taegun Seo, Dong-Uk Kim
Current Microbiology.2025;[Epub] CrossRef - Flavobacterium arundinis sp. nov., Flavobacterium calami sp. nov., Flavobacterium helocola sp. nov. and Flavobacterium flavipallidum sp. nov., isolated from stagnant water in a clump of Phragmites japonica Steud
Sunho Park, Inhyup Kim, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Facivitalis istanbulensis gen. nov., sp. nov., a novel member of the family Sphingomonadaceae with the potential for aromatic-degradation isolated from Jet A1 fuel
Simge Arkan-Ozdemir, Miray Üstüntürk-Onan, Esra Ilhan-Sungur
Antonie van Leeuwenhoek.2025;[Epub] CrossRef -
Streptacidiphilus alkalitolerans sp. nov., Streptacidiphilus cavernicola sp. nov. and Streptacidiphilus jeojiensis sp. nov. isolated from a cave, and an emended description of the genus Streptacidiphilus
Soon Dong Lee, Hong Lim Yang, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Brevibacterium litoralis sp. nov., a cellulose-degrading strain isolated from marine surface sediment
Quan Yang, Aolin Zhao, Haifei Liu, Jiawei Li, Shujing Wu, Ying Huang, Jie Weng, Mingguo Jiang, Yi Jiang
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Microbacterium rhizophilus sp. nov., an indole acetic acid-producing actinobacterium isolated from rhizosphere soil
Haifei Liu, Quan Yang, Jiawei Li, Lifang Yang, Aolin Zhao, Ying Huang, Hongcun Liu, Shujing Wu, Mingguo Jiang
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Roseobacter sinensis sp. nov., a marine bacterium capable to synthesize arachidonic acid
Hong-Chuan Wang, Meng-Han Huang, Dan-Yuan Guo, Wen-Li Liu, Zi-Wen Yang, Dao-Feng Zhang, Wen-Jun Li
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Comprehensive genomic and phenotypic characterization of thermophilic bacterium Sinimarinibacterium thermocellulolyticum sp. nov. HSW-8T, a cellulase-producing bacterium isolated from hot spring water in South Korea
Yue Jiang, Zhun Li
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Mesorhizobium salmacidum sp. nov. and Mesorhizobium argentiipisi sp. nov. are symbionts of the dry-land forage legumes Lessertia diffusa and Calobota sericea
Esther K. Muema, Melandré van Lill, Stephanus N. Venter, Wai Yin Chan, Ricu Claassens, Emma T. Steenkamp
Antonie van Leeuwenhoek.2025;[Epub] CrossRef -
Tetrameric PilZ protein stabilizes stator ring in complex flagellar motor and is required for motility in
Campylobacter jejuni
Yuanyuan Chen, Shoichi Tachiyama, Yuqian Li, Xueyin Feng, Hang Zhao, Yanmin Wu, Yu Guo, María Lara-Tejero, Canfeng Hua, Jun Liu, Beile Gao
Proceedings of the National Academy of Sciences.2025;[Epub] CrossRef - Proposal of Lactococcus intestinalis Sun et al. 2024 as a Later Heterotypic Synonym of Lactococcus muris Afrizal et al. 2023
Xin-Yu Zhu, Chun Tao Gu
Current Microbiology.2025;[Epub] CrossRef - Isolation and characterization of a novel lytic phage K14-2 infecting diverse species of the genus Klebsiella and Raoultella
Seomin Kang, Jeong-Eun Han, Young-Sik Choi, In-Chul Jeong, Jin-Woo Bae
Frontiers in Microbiology.2025;[Epub] CrossRef - Jannaschia ovalis sp. nov., a marine bacterium isolated from a tidal flat sediment in the Republic of Korea
Dae Young Kwon, Sang Hyun Lee, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Yeonjae Yoo, Jae-Jin Kim
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Erwinia aeris sp. nov., A Novel Bacterium Isolated from the Surface of an Ore in Hubei Province, China
He-Bao Guo, Hong-Tu Zhu, Yi-Fan Zhang, Fu Yang, Xiao-Tong Ma, Shi-Gui Li, Hai-Lei Wei, Xiao-Xia Zhang
Current Microbiology.2025;[Epub] CrossRef - Assessing hydrocarbon degradation capacity of Isoptericola peretonis sp. nov. and related species: a comparative study
Àngela Vidal-Verdú, Adriel Latorre-Pérez, Javier Pascual, Ruth Mañes-Collado, Aitana Nevot-Terraes, Manuel Porcar
Frontiers in Microbiology.2025;[Epub] CrossRef - Physiological and Genomic Elucidation of Cold-Resilient Rhizobacteria Reveals Plant Growth Promotion by Siderophore Optimization and Enhanced Biocontrol Potential Against Fungal Pathogens
Pallavi Sharma, Girija Kaushal, Shruti Sinai Borker, Ayush Lepcha, Anil Kumar, Rakshak Kumar
Journal of Plant Growth Regulation.2025; 44(12): 6953. CrossRef - Unveiling root nodulation in Tribulus terrestris and Roystonea regia via metagenomics analysis
Saleh Rahimlou, Mahdieh S. Hosseyni Moghadam, Romina Gazis, Elena Karlsen-Ayala, Mohammad Bahram, Timothy Y. James, Leho Tedersoo
Molecular Genetics and Genomics.2025;[Epub] CrossRef -
Methylobacterium litchii sp. nov., Methylobacterium guangdongense sp. nov. and Methylorubrum subtropicum sp. nov., isolated from the phyllosphere of litchi
Ruifeng Gao, Jiali Li, Huaping Li, Xinqiang Xie, Guang-Da Feng, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - The Genomic Characteristics of Potential Probiotics: Two Streptococcus salivarius Isolates from a Healthy Individual in China
Mingyue Sun, Qian Li, Feiran Zhang, Ding Yao, Wenhua Huang, Qingyu Lv, Hua Jiang, Decong Kong, Yuhao Ren, Shaolong Chen, Yongqiang Jiang, Peng Liu
Microorganisms.2025; 13(3): 694. CrossRef - High diversity of nitrifying bacteria and archaea in biofilms from a subsea tunnel
Linnea F M Kop, Hanna Koch, Paula Dalcin Martins, Carolina Suarez, Sabina Karačić, Frank Persson, Britt-Marie Wilén, Per Hagelia, Mike S M Jetten, Sebastian Lücker
FEMS Microbiology Ecology.2025;[Epub] CrossRef - Novel Gene Clusters for Secondary Metabolite Synthesis in Mesophotic Sponge‐Associated Bacteria
Nuo Chen, Liwei Liu, Jingxuan Wang, Deqiang Mao, Hongmei Lu, Tânia Keiko Shishido, Shuai Zhi, Hua Chen, Shan He
Microbial Biotechnology.2025;[Epub] CrossRef - Enterococcus hailinensis sp. nov., Isolated from Traditional Chinese Pickle
Ting-Yu Wang, Hao Wang, Chun Tao Gu
Current Microbiology.2025;[Epub] CrossRef - Three Novel Bacterial Species, Roseateles flavus sp. nov., Roseateles paludis sp. nov., and Roseateles hydrophilus sp. nov., Isolated from Various Water-Related Environments
Haejin Woo, Geeta Chhetri, Inhyup Kim, Sunho Park, Hyunji Lee, Subin Yook, Taegun Seo
Current Microbiology.2025;[Epub] CrossRef - Genome mining and metabolite profiling illuminate the taxonomy status and the cytotoxic activity of a mangrove-derived Microbacterium alkaliflavum sp. nov
Wen-Jin Hu, Li-Xian Deng, Yi-Ying Huang, Xiao-Chun Wang, Jin-Ling Qing, Hao-Jun Zhu, Xing Zhou, Xiao-Ying Zhou, Jie-Mei Chu, Xinli Pan
BMC Microbiology.2025;[Epub] CrossRef - Curvibacter soli sp. nov., Extensimonas soli sp. nov., Pseudarthrobacter naphthalenicus sp. nov. and Terripilifer ovatus gen. nov., sp. nov., four new species isolated from polluted soil
Ze-Shen Liu, Ke-Huan Wang, Xiao-Kang Wang, Man Cai, Mei-Ling Yang, Wen-Ke Yang, De-Feng Li, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Inconstantimicrobium mannanitabidum sp. nov., a novel member of the family Clostridiaceae isolated from anoxic soil under the treatment of reductive soil disinfestation
Atsuko Ueki, Akio Tonouchi, Sachi Honma, Nobuo Kaku, Katsuji Ueki
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genomic Scale Analysis Foresees Enteroprotective and Butyrogenic Properties in Brazilian Isolates of Lactiplantibacillus plantarum
Thayra Gomes dos Santos, Karina Araujo Gomes dos Santos, Eddy José Francisco de Oliveira, Bertram Brenig, Elinalva Maciel Paulo, Pedro Henrique Marques, Valbert Nascimento Cardoso, Flávia Figueira Aburjaile, Siomar Castro Soares, Wanderson Marques da Silv
Probiotics and Antimicrobial Proteins.2025; 17(5): 3713. CrossRef - Comprehensive Phenotypic Characterization and Genomic Analysis Unveil the Probiotic Potential of Bacillus velezensis K12
Yingying Tang, Tian Li, Yihong Huang, Liangliang Wu, Xiaobo Liu, Ruichao Yue, Jianmin Yuan
Animals.2025; 15(6): 798. CrossRef - Halomonas pelophila sp. nov., isolated from mud and Halomonas aquatica sp. nov., isolated from marine water
Subin Yook, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Taegun Seo
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Bioremediation of chromium (VI) from mining-contaminated soil using Klebsiella sp. (BH-A1): environmental implications
Anjali Srivastava, Asha Lata Singh, Aniruddha Kumar, Alok Kumar
Environmental Geochemistry and Health.2025;[Epub] CrossRef - Superior Resolution Profiling of the Coleofasciculus Microbiome by Amplicon Sequencing of the Complete 16S rRNA Gene and ITS Region
Pia Marter, Heike M. Freese, Victoria Ringel, Henner Brinkmann, Silke Pradella, Manfred Rohde, Michal Jarek, Cathrin Spröer, Irene Wagner‐Döbler, Jörg Overmann, Boyke Bunk, Jörn Petersen
Environmental Microbiology Reports.2025;[Epub] CrossRef - Sulfurimonas microaerophilic sp. nov. and Sulfurimonas diazotrophicus sp. nov.: Two Novel Nitrogen-Fixing and Hydrogen- and Sulfur-Oxidizing Chemolithoautotrophs Within the Campylobacteria Isolated from Mangrove Sediments
Yangsheng Zhong, Yufei Li, Zhaodi Wang, Liang Cui, Shiwei Lv, Han Zhu, Qing Yuan, Qiliang Lai, Shasha Wang, Lijing Jiang
Microorganisms.2025; 13(4): 713. CrossRef - Uliginosibacterium silvisoli sp. nov., Isolated from Subtropical Forest Soil in Hunan Province, China
Yu Lv, Qi Zhang, Le Liu, Jian He, Shimei Wang, Qirong Shen
Current Microbiology.2025;[Epub] CrossRef -
Evidence of
in vitro mecB
-mediated β-lactam antibiotic resistance transfer to
Staphylococcus aureus
from
Macrococcus psychrotolerans
sp. nov., a psychrophilic bacterium
Ivana Mašlaňová, Vojtěch Kovařovic, Tibor Botka, Pavel Švec, Ivo Sedláček, Ondrej Šedo, Adéla Finstrlová, Meina Neumann-Schaal, Sarah Kirstein, Sybille Schwendener, Eva Staňková, Kristína Rovňáková, Petr Petráš, Jiří Doškař, Vincent Perreten, Roman Pantůč
Applied and Environmental Microbiology.2025;[Epub] CrossRef - Mixotrophic cyanobacteria are critical active diazotrophs in polychlorinated biphenyl-contaminated paddy soil
Wenbo Hu, Ying Teng, Xiaomi Wang, Yongfeng Xu, Yi Sun, Hongzhe Wang, Yanning Li, Shixiang Dai, Ming Zhong, Yongming Luo
ISME Communications.2025;[Epub] CrossRef - Meridianimarinicoccus marinus sp. nov., Isolated from Tidal Flat
Min-Seok Kang, Jae-Yon Yu, Hyung-Seop Kim, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
Current Microbiology.2025;[Epub] CrossRef - Metabolomic and genomic insights into Micromonospora carbonacea subsp. caeruleus for anti-colorectal compound
Tepakorn Kongsaya, Nuttaporn Emthomya, Chananan Ngamcharungchit, Aiyada Aroonsri, Umaporn Uawisetwathana, Thapanee Pruksatrakul, Jirayut Euanorasetr, Bungonsiri Intra
Applied Microbiology and Biotechnology.2025;[Epub] CrossRef -
Marivivens marinum sp. nov., isolated from tidal flat, Gochang, South Korea
Min-Seok Kang, Hyung-Seop Kim, Jae-yon Yu, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Antrihabitans spumae sp. nov., a novel bacterium isolated from stable foams formed in wastewater treatment plants and emended description of the genus Antrihabitans
Jhon A. Suescún-Sepúlveda, Raúl Riesco, Steve Petrovski, Jacques Soddell, Vartul Sangal, Amanda L. Jones, Fernando Sánchez-Juanes, Robert J. Seviour, Michael Goodfellow, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Insights into Leuconostoc-clade as starters in Chinese paocai: Shaping microbial communities for rapid, safe, and flavor-preserving fermentation
Xinyu Hu, Mengke Cheng, Meng Zhang, Biyue Yang, Rong Wang, Juan Bai, Jiayan Zhang, Wei Wei, Lin Zhu, Xiang Xiao
Food Bioscience.2025; 68: 106410. CrossRef -
Buchananella felis sp. nov. isolated from feline pyothorax
Simon Feyer, Stephanie Fuss, Natascha Gross, Sandra Zumwald, Isabelle Brodard, Sonja Kittl
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome mining reveals the biosynthetic potential of a novel Lysinibacillus zambalensis sp. nov., isolated from a hyperalkaline spring
Joyce Amarachi Aja, Lawrence Dave Llorin, Kenji Rowel Q. Lim, Jade Joshua Teodosio, Erwin John Sioson, Ron L. Dy, Carlo A. Arcilla, Doralyn S. Dalisay, Jose Enrico Hizon Lazaro
Archives of Microbiology.2025;[Epub] CrossRef - Genetic and species rearrangements in microbial consortia impact biodegradation potential
Zaki Saati-Santamaría, Pilar Navarro-Gómez, Juan A Martínez-Mancebo, Maitane Juárez-Mugarza, Amando Flores, Inés Canosa
The ISME Journal.2025;[Epub] CrossRef - Massilia paldalensis sp. nov., Isolated from Stream Bank Soil
Nhi Thi Ai Nguyen, Jaisoo Kim
Diversity.2025; 17(5): 327. CrossRef - Description of Labrys sedimenti sp. nov., isolated from a diclofenac-degrading enrichment culture, and genome-based reclassification of Labrys portucalensis as a later heterotypic synonym of Labrys neptuniae
Andrea Csépányi, András Táncsics, Márton Pápai, Erzsébet Baka, Erika Tóth, Károly Bóka, Hussein Daood, István Szabó, Balázs Kriszt
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Nocardioides eburneus sp. nov., isolated from commercial soil
Min-Seok Kang, Jae-yon Yu, Yong Ho Kim, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Gracilibacillus pellucidus sp. nov., a moderately halophilic bacterium isolated from saline soil in Xinjiang province, China
Zengqin Zhang, Hui Wang, Mengli Xia, Wenjing Li, Pan Zhang, Yanwei Wang, Linpei Liu, Peixin Li, Yong Zhuang, Furong Tan
Antonie van Leeuwenhoek.2025;[Epub] CrossRef -
Pontibacter rufus sp. nov., Pontibacter humidus sp. nov. and Pontibacter coccineus sp. nov. isolated from UV-irradiated soil in Korea
Seona Park, Hyang Burm Lee, Sathiyaraj Srinivasan, Myung Kyum Kim
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Insights into the bacterial fraction of sediments from the South China Sea: physiological, chemotaxonomic, and genomic characterization of seven novel members of the Bacillaceae family
Shu-Tong Ge, Hong Cheng, Ying-Wen Zhong, Jia-Ling Tang, Xin-Yue Huang, Bin Wei, Yue-Hong Wu, Chun-Sheng Wang
Frontiers in Microbiology.2025;[Epub] CrossRef - A sustainable solution for eucalyptus cultivation under environmental stresses: novel Pseudomonas species with plant growth-promoting traits
Tian Liu, Yuhan Jiang, Weishan Zhang, Lu Lin, Xinlei Fan
Plant and Soil.2025;[Epub] CrossRef -
Cultivation and metabolic versatility of novel and ubiquitous chemolithoautotrophic
Campylobacteria
from mangrove sediments
Liang Cui, Yangsheng Zhong, Yufei Li, Stefan M. Sievert, Zhaobin Huang, Wanpeng Wang, Maxim Rubin-Blum, Xiaxing Cao, Yong Wang, Zongze Shao, Qiliang Lai, Shasha Wang, Lijing Jiang, Weimin Sun
Microbiology Spectrum.2025;[Epub] CrossRef - Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
Marike Palmer, Nancy O. Nou, Lara A. Turello, Carolyn E. Power, John C. Ong, Jonathan K. Covington, Dengxun Lai, Xavier Mayali, Anna-Louise Reysenbach, Yan-Ling Qi, Jeremy A. Dodsworth, Jian-Yu Jiao, Lan Liu, Zheng-Han Lian, Meng-Meng Li, Yitai Liu, Ranja
Systematic and Applied Microbiology.2025; 48(5): 126644. CrossRef - Polyphasic taxonomy and genome mining of Desertivibrio insolitus gen. nov., sp. nov., a novel psychrotolerant pectin-degrading actinobacterium isolated from desert soil
Shuai Li, Jun Liu, Huan-Huan He, Jia-Rui Han, Jie Huang, Wen-Hui Lian, Yong-Hong Liu, Lei Dong, Wen-Jun Li
Current Research in Microbial Sciences.2025; 9: 100438. CrossRef - Exploring the Biosynthetic Potential of Microorganisms from the South China Sea Cold Seep Using Culture-Dependent and Culture-Independent Approaches
Gang-Ao Hu, Huai-Ying Sun, Qun-Jian Yin, He Wang, Shi-Yi Liu, Bin-Gui Wang, Hong Wang, Xin Li, Bin Wei
Marine Drugs.2025; 23(8): 313. CrossRef - Parerythrobacter aurantius sp. nov., a Member of the Family Erythrobacteraceae Isolated from a Coastal Breakwater Stone
Yang Liu, Tao Pei, Juan Du, Ming-Rong Deng, Honghui Zhu
Current Microbiology.2025;[Epub] CrossRef - Oryzifoliimicrobium ureilyticus gen. nov., sp. nov., a Novel Phosphate-Solubilizing and Siderophore-Producing Bacterium Within the Family Rhizobiaceae
Guo-Hong Liu, Ling Yao, Peng Gao, Shu-Qun Zhang, Bing Li, Christopher Rensing, Wen-Qing Li, Shun-Gui Zhou
Current Microbiology.2025;[Epub] CrossRef - Flavobacterium algoriphilum sp. nov., Flavobacterium arabinosi sp. nov., Flavobacterium cryoconiti sp. nov., Flavobacterium galactosi sp. nov., Flavobacterium melibiosi sp. nov., and Flavobacterium algoris sp. nov., six novel cold-adapted bacteria isolate
Lei-Lei Yang, Yu-Hua Xin, Qing Liu
BMC Microbiology.2025;[Epub] CrossRef - Isoptericola rhizosphaerae sp. nov. and Isoptericola aurantiacus sp. nov. two novel bacteria isolated from rhizosphere soil
Haifei Liu, Quan Yang, Jiawei Li, Fei Yang, Caifei Li, Ding Li, Ying Sun, Lifang Yang, Mingguo Jiang
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - A new nodule-associated bacterium, Cupriavidus consociatus sp. nov. Isolated from the root nodules of Leucaena sp. and Arachis sp. growing in a cacao field in Chiapas, Mexico
Erika-Yanet Tapia-García, Belén Chávez-Ramírez, Violeta Larios-Serrato, Ivan Arroyo-Herrera, J. Antonio Ibarra, Paulina Estrada-de los Santos, Ying Ma
PLOS One.2025; 20(5): e0324390. CrossRef - Lacticaseibacillus suihuaensis sp. nov., Isolated from Traditional Chinese Pickle
Xin-Yu Zhu, Chun Yan Li, Hao Wang, Chun Tao Gu
Current Microbiology.2025;[Epub] CrossRef - Isolation and characterization of Fibrella aquatica sp. nov. from freshwater, Fibrella musci sp. nov. from moss on soil and Fibrella arboris sp. nov. from moss on a tree
Chunghwan Baek, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Subin Yook, Seunghui Kwak, Jisu Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Coriander borne
Salmonella
superbug: genomic assessments of chromosomal and plasmid-associated resistance, virulence and MGEs of XDR
Salmonella
enterica Typhi NH1
Noor Ul Huda, Khwaja Ali Hasan, Faizan Saleem, Shahida Naz, Saeed Khan, Zulfiqar Ali Mirani, Muhammad Noman Syed, Amal S. Alswat, Muhammad Sohail
Pathogens and Global Health.2025; 119(5-6): 210. CrossRef - Characterization of known and novel clinically important antibiotic resistance genes and novel microbes from wastewater-impacted high Arctic fjord sediments
Manish P. Victor, Lise Øvreås, Nachiket P. Marathe
Science of The Total Environment.2025; 985: 179699. CrossRef - Isolation and characterization of Polaribacter sargassicola sp. nov. and Algibacter ulvanivorans sp. nov.: two novel species with ability to degrade algal polysaccharides
Jin Li, Aihua Mao, Chao Peng, Linhui Li, Binghan Li, Lijuan Zhou, Yan Xu, Mingqi Zhong, Zhong Hu
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Emergence of a dual-threat ST1322 clinical Isolate: Hypervirulent and carbapenem-resistant Klebsiella pneumoniae revealed by genomic and virulence analysis
Tianyao Liu, Xinyi Chen, Zhiyun Hao, Min Wang
Biochemical and Biophysical Research Communications.2025; 779: 152425. CrossRef - Genomic insights into Neopusillimonas aestuarii sp. nov., a novel estuarine bacterium with adaptations for ectoine biosynthesis and stress tolerance
Kiran Kirdat, Umera Patwekar, Kunal Jain, Malad Mubarak, Pradeep Choudhary, Lucky Thakkar, Vipool Thorat, Datta Madamwar, Tushar Lodha, Amit Yadav
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Robertkochia aurantiaca sp. nov., and Robertkochia flava sp. nov., two potential quinate- and catechol-degrading bacteria isolated from tidal-flat sediments
Jaincy N. Jayan, Young-Mi Lee, Ye-ji You, Sathiyaraj Srinivasan, Sang-Seob Lee
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Genomic insights into novel predatory myxobacteria isolated from human feces
Joyasree Das, Shilpee Pal, Anu Negi, Shiva S. Sundharam, Amit Yadav, Srikrishna Subramanian, S. K. Sinha, Jayanta Samanta, Srinivasan Krishnamurthi, Jan Claesen
Microbiology Spectrum.2025;[Epub] CrossRef -
Flavobacterium mekongense sp. nov., isolated from the Mekong River in Thailand
Chitwadee Phithakrotchanakoon, Supattra Kitikhun, Paopit Siriarchawatana, Piyanat Charoenyingcharoen, Sukanya Jeennor, Thanyakorn Nilsakha, Amonwan Chanpet, Thanat Vorajinda, Sermsiri Mayteeworakoon, Pattaraporn Yukphan, Supawadee Ingsriswang
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Familial Reclassification Within Order Lysobacterales and Proposal of Four Novel Species
Tengfei Ma, Haijiao Liu, Yafei Chen, Juan Liu, Chungen Piao, Han Xue, Risheng Xu, Yong Li
Microorganisms.2025; 13(6): 1212. CrossRef - Comparative genome analyses reveal insights into the marine adaptation of a novel bacterium Pontimicrobium maritimus sp. nov., isolated from seawater
Neak Muhammad, Tien Q. Vuong, Ho Le Han, Song-Gun Kim
Scientific Reports.2025;[Epub] CrossRef - Lacticaseibacillus salsurae sp. nov. and Levilactobacillus muriae sp. nov., isolated from traditional Chinese pickle
Si-Tong Song, Ting-Yu Wang, Xin-Yu Zhu, Chun Tao Gu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome analysis reveals diverse novel psychrotolerant Mucilaginibacter species in Arctic tundra soils
Anil Kumar, Minna K Männistö, Marika Pätsi, Lee J Kerkhof, Max M Häggblom
ISME Communications.2025;[Epub] CrossRef -
Chryseobacterium cupriresistens sp. nov., a copper-resistant bacterium isolated from soil contaminated with heavy metals in Chapala Basin, Mexico
Ivan Arroyo-Herrera, Ana Laura Reséndiz-Martínez, Brenda Román-Ponce, Joseph Guevara-Luna, Xiaoxia Zhang, Ayixon Sánchez-Reyes, Paulina Estrada-de los Santos, En Tao Wang, María Soledad Vásquez-Murrieta
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Cellvibrio chitinivorans sp. nov., a chitinolytic bacterium isolated from an intertidal mudflat
Yanzhe Xin, Xing Qin, Honghai Zhang, Tao Dong, Xiaolu Wang, Yaru Wang, Yuan Wang, Tao Tu, Huoqing Huang, Bin Yao, Huiying Luo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - A virulent phage vB_VpaP_R28Z infecting Vibrio parahaemolyticus with potential for therapeutic application
Huiying Zhong, Wenjie Huang, Kate Ting Lin, Qian Zhang, Yuchan Deng, Rui Zhang, Ruijie Ma
BMC Microbiology.2025;[Epub] CrossRef -
Curtobacterium phyllosphaerae sp. nov. and Curtobacterium guangdongense sp. nov., isolated from the citrus phyllosphere
Songzhen Yang, Jiali Li, Xiang Rong, Qingying Chen, Xueying Lu, Jun Zhang, Ming-Rong Deng, Honghui Zhu, Guang-Da Feng
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genomic insights and biotechnological potential of “Mesobacillus aurantius” strain S13: A canthaxanthin pigment-producing bacterium
Shankar Karthik, Gurusamy Raman, Arumugam Srinivasan, Syed Gulam Dastager, Vasudev Wagh, Niraikulam Ayyadurai
Gene Reports.2025; 40: 102287. CrossRef -
Ovoidimarina sediminis gen. nov., sp. nov., a novel member of the Roseobacteraceae isolated from tidal flat sediment
Akila Kathiresan, Jaincy N. Jayan, Hee-Su Kim, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Characterization of Sulfitobacter sediminivivens sp. nov., A Novel Halotolerant, Nitrogen-Assimilating Bacterium from Tidal Flat Sediment
Akila Kathiresan, Hee-Yeon Park, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
Current Microbiology.2025;[Epub] CrossRef -
Roseovarius halophilus sp. nov., Roseovarius salis sp. nov. and Roseovarius salincola sp. nov., three novel species of the genus Roseovarius from different saline lakes
Dildar Wu, Hao-Ran Guo, Lei Gao, Qing-Yu Xu, Tayyiba Habib, Rashidin Abdugheni, Bao-Zhu Fang, Yong-Hong Liu, Wen-Sheng Shu, Xin Li, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Alicycliphilus soli sp. nov., Isolated from a Plastic Film Greenhouse Soil and the Proposal for the Reclassification of Diaphorobacter limosus as Alicycliphilus limosus comb. nov.
Xinyu Liu, Hailong Liang, Yingying Liu, Huijun Zhang, Hui Han, Bingyue Xin, Xiaomin Wu, Feng Li, Man Song, Long Zhang
Current Microbiology.2025;[Epub] CrossRef - Genome Mining of Chromobacterium Genus Reveals a Class of Nonribosomal Lipopeptides with Potent Antifungal Activity
Qinghong Meng, Yutian Guan, Jinghai Wang, Xingyan Wang, Xiangmei Ren, Haiyan Sui, Bin Wei, Xiaoying Bian
Journal of Agricultural and Food Chemistry.2025; 73(35): 21920. CrossRef - Microbacterium xanthum sp. nov. Isolated from Seaweed, with the Reclassification of Microbacterium ihumii Yacouba et al. 2023 as a Later Heterotypic Synonym of Microbacterium tenebrionis Lee and Kim 2023
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Current Microbiology.2025;[Epub] CrossRef -
Guyparkeria halopsychrophila sp. nov., a chemolithoautotrophic polyextremophile isolated from a sub-zero Arctic hypersaline spring
Matthew W. Quinn, Olivia Blenner-Hassett, Scott Sugden, Lochlan Breckenridge, Lyle G. Whyte
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Comparative genomics of Clostridium butyricum reveals a conserved genome architecture and novel virulence-related gene clusters
Orlagh H. Anderson, James P. J. Chong, Gavin H. Thomas
Microbial Genomics
.2025;[Epub] CrossRef -
Cedecea selenatireducens sp. nov. and Rahnella selenatireducens sp. nov., isolated from the seleniferous soil
Sasa Zhang, Yi Liu, Haoyang Wang, Jing Peng, Kui Li, Ziwei Jiao, Yanbin Guo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Methylobacterium alsaeris sp. nov. and Methylobacterium carpenticola sp. nov., isolated from a car air conditioning system
Jung Pyo Yoon, Tae Hun Kim, So Yoon Park, Ki Young Yoon, Hyung Min Kim
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Emerging probiotics: future therapeutics for human gut health
Sylvia H Duncan, Carlos Sabater
FEMS Microbiology Ecology.2025;[Epub] CrossRef - Taxonomic Characterization and Genome Analysis of Polaribacter gochangensis sp. nov., Isolated From a Tidal Clam Farm
Akila Kathiresan, Hyung-Seop Kim, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
Current Microbiology.2025;[Epub] CrossRef - Integrated genome mining and molecular networking uncover the biosynthetic potential of a novel mangrove-derived strain Streptomyces sp. B1866
Liyuan Jiang, Wenjin Hu, Jinling Qin, Baorui Teng, Siwei Chen, Dan Zhang, Hui Lei, XinLi Pan
BMC Genomics.2025;[Epub] CrossRef - Efficient degradation of cephalexin by newly isolated strain Brevundimonas sp. CEF1 and its biodegradation mechanisms
Boxiang Kou, Yujia Wang, Yunyun Dong, Tiantian Wang, Zexun Wang, Junheng Wang, Dan Ma, Sijun Dong
Chemical Engineering Journal.2025; 522: 167124. CrossRef - Pseudarthrobacter raffinosi sp. nov. and Pseudarthrobacter cellobiosi sp. nov. Two Heavy-Metal-Tolerant and Psychrotolerant Bacteria Isolated from Glaciers
Lei-Lei Yang, Yu-Hua Xin, Qing Liu
Current Microbiology.2025;[Epub] CrossRef - Description of Silvibacterium acidisoli sp. nov. and Edaphobacter albus sp. nov. and a Proposal for Taxonomic Rearrangements Within the Family Acidobacteriaceae Based on Comparative Genome Analysis
Lihong Qiu, Lixiang Cao
Taxonomy.2025; 5(3): 40. CrossRef -
Variovorax atrisoli sp. nov., a novel species isolated from black soil applied with herbicide atrazine in Northeast China
Jianheng Wang, Yuzhu Chen, Yuxi Yang, Yuxin Fan, Charity Offei, Jing Bai, Yanjie Qi, Yucheng Wu, Dongfei Han
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Agromyces endophyticus sp. nov., isolated from endosphere of garlic
Seunghwan Kim, Jun Heo, Hyorim Choi, Yunhee Choi, Hang-Yeon Weon, Soon-Wo Kwon, Hanako Naito, Tomomi Yamada, Moriyuki Hamada, Yiseul Kim
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Augmenting microbial phylogenomic signal with tailored marker gene sets
Henry Secaira-Morocho, Xiaofang Jiang, Qiyun Zhu
Nature Communications.2025;[Epub] CrossRef - Potential application of MALDI-TOF MS to identify Streptococcus parapneumoniae, an emerging pathogen previously misidentified as Streptococcus pneumoniae
Yan Zhao, Yuanchao Ma, Hwei Huih Lee, Wing Ho Li, Antonio Hung-Yee Ngan, Jonathan Hon-Kwan Chen, Simon Yung-Chun So, Vincent Chi-Chung Cheng, Kwok-Yung Yuen, Man Lung Yeung, Jade Lee-Lee Teng
International Journal of Infectious Diseases.2025; 160: 108042. CrossRef -
Apilactobacillus intestinapis sp. nov., isolated from the honeybee
Li-Jyun Tsai, Po-Cheng Chen, Wei-Tsu Lan, Yun-Shien Lee, Yu-Chung Chang, Hui-Chung Wu, Chong-You Lin, Yi-Hsien Liu, Jhih-Ti Teng, Yi-Sheng Chen
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Phylogenomic insights support the merger of the genera Mameliella and Maliponia into the genus Antarctobacter
Xiaokun Xu, Xiuzhen Li, Qingjie Xue, Ang Liu
BMC Genomics.2025;[Epub] CrossRef - Hymenobacter cheonanensis sp. nov., and Hymenobacter convexus sp. nov. isolated from the construction site
Ji-yun Son, Sathiyaraj Srinivasan
Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Comparative genomics of ‘Xanthomonas cannabis’ reveals an emerging, diverse pathogen
Daniel J. E. McKnight, Lauren Clackson, Johanna Wong-Bajracharya, John Webster, Paul Worden, Fridtjof Snijders, Efenaide B. Okoh, Steven P. Djordjevic, Toni A. Chapman, Daniel R. Bogema
Microbial Genomics
.2025;[Epub] CrossRef - Isolation of diverse Undibacterium-related strains from alpine lakes and re-examining the taxonomic status of this genus
Hui-Bin Lu, Ling-Yang Kong, Li Chen, Guang-Jie Chen, Jian-Jun Wang
Systematic and Applied Microbiology.2025; 48(6): 126661. CrossRef - Genome-based classification of Halonovum salinarum gen. nov., sp. nov., and Halonovum rutilum sp. nov., two novel halophilic archaea isolated from a solar saltern
Chi Young Hwang, Eui-Sang Cho, Ki-Eun Lee, Eun-Young Lee, Myung-Ji Seo
BMC Microbiology.2025;[Epub] CrossRef -
Enterococcus infantis sp. nov., isolated from the faeces of an infant with atopic dermatitis
Chin-Kan Chan, Li-Jyun Tsai, Misa Otoguro, Fujitoshi Yanagida, Yun-Shien Lee, Hui-Chung Wu, Yu-Chung Chang, Yi-Sheng Chen
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Reclassification of Rhizobium panacihumi as Endobacterium panacihumi comb. nov. and emended description of the genus Endobacterium
Esther Menéndez, José David Flores-Félix, Encarna Velázquez, Alvaro Peix
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Description of Sediminicola litoralis sp. nov. isolated from tidal flat sediment and functional genomic analysis of the genus Sediminicola
Yang Liu, Juan Du, Xiong Xiong, Xuan Lu, Haofang Wu, Shuai Meng, Liangqiu Li, Ming-Rong Deng, Honghui Zhu
BMC Microbiology.2025;[Epub] CrossRef - Description of Fulverythrobacter ferritrahens gen. nov., sp. nov., a Siderophore-Producing Bacterium Isolated from Poultry Manure Compost and Reclassification of Caenibius fulvus and Altererythrobacter segetis as Fulverythrobacter fulvus Comb. nov. and Cr
Shih-Yao Lin, Asif Hameed, Tzu-Yu Lin, Chiu-Chung Young
Current Microbiology.2025;[Epub] CrossRef -
Identification of an antifungal lipopeptide from
Bacillus amyloliquefaciens
HAU3 inhibiting the growth of
Fusarium graminearum
using preparative chromatography and 2D-NMR
Yuxuan Liu, Ziyao Shi, Xianhua Wan, Ruolin Wang, Yang Liu, Yujie Gong, Donghua Li, Yanhua Zhang, Hong Li, Guoxi Li, Xiaojun Liu, Xiangli Sun, Xiangtao Kang, Yanbin Wang, Quan Zeng
Microbiology Spectrum.2025;[Epub] CrossRef -
Nocardioides lacus sp. nov., a novel member of the Actinomycetota isolated from a freshwater pond
Young Ho Nam, Ji Young Jung, Hye Kyeong Kang, Byung-Gon Ryu, Ye-Ji Hwang, Tae Jin Kim, Mi-Hwa Lee, Hyun Mi Jin, Kook-Il Han
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Estimated timeline for the evolution of symbiotic nitrogen fixing Paraburkholderia
Lazarus Mavima, Emma T. Steenkamp, Chrizelle W. Beukes, Marike Palmer, Sofie E. De Meyer, Euan K. James, Stephanus N. Venter, Martin P.A. Coetzee
Molecular Phylogenetics and Evolution.2025; 213: 108447. CrossRef - Actinomadura opuntiae Sp. Nov., Isolated from a Soil of Cactus and the Reclassification of Actinomadura namibiensis Wink Et Al. 2003 as a Later Heterotypic Synonym of Actinomadura kijaniata Horan and Brodsky 1982
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Current Microbiology.2025;[Epub] CrossRef - Comparative Genomics and Phylogenomics of Novel Radiation-Resistant Bacterium Paracoccus qomolangmaensis sp. nov. S3-43T, Showing Pyrethroid Degradation
Yang Liu, Tuo Chen, Yiyang Zhang, Lu Zhang, Xiaowen Cui, Tian Cheng, Guangxiu Liu, Wei Zhang, Gaosen Zhang
Microorganisms.2025; 13(11): 2441. CrossRef - Nocardioides epinepheli sp. nov., an Epsilon-Poly-l-lysine-Producing Actinobacterium Isolated from the Fish Intestine
Jiawei Li, Aolin Zhao, Quan Yang, Haifei Liu, Lifang Yang, Ying Huang, Shujing Wu, Mingguo Jiang
Current Microbiology.2025;[Epub] CrossRef - Paired genomic and metabolomic analysis reveals the secondary metabolome potential of Cystobacter
Wen-Chao Yu, Shu-Qi Ge, Jia-Lian Huang, Bin Wei, Qihao Wu, Hong Wang, Yanlei Yu
Journal of Applied Microbiology.2025;[Epub] CrossRef - Strain-specific qPCR assay to track the vaginal colonization of the probiotic Lacticaseibacillus rhamnosus TOM 22.8 strain orally administered
Amanda Vaccalluzzo, Alessandra Pino, Georgiana Bosco, Cinzia Caggia, Cinzia Lucia Randazzo
BMC Microbiology.2025;[Epub] CrossRef - Longitudinal gut microbiota tracking reveals the dynamics of horizontal gene transfer
Haoran Peng, Sergio Andreu-Sanchez, Angel J. Ruiz-Moreno, Asier Fernández-Pato, Jiafei Wu, Ranko Gacesa, Alexandra Zhernakova, Daoming Wang, Jingyuan Fu
Nature Communications.2025;[Epub] CrossRef - Streptococcus atopica sp. nov., Isolated from the Feces of a Toddler with Atopic Dermatitis
Chin-Kan Chan, Hui-Shan Wu, Li-Jyun Tsai, Yun-Shien Lee, Yu-Chung Chang, Hui-Chung Wu, Yi-Sheng Chen
Current Microbiology.2025;[Epub] CrossRef -
Caballeronia eucalypticola sp. nov., isolated from the xylem tissues of eucalyptus
Wenkai Xu, Yong Li, Han Xue, Huiping Li
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Acid tolerance and metabolic potential of comammox and nitrite-oxidizing Nitrospira enriched from soil
Yu Takahashi, Hirotsugu Fujitani, Itsuki Taniguchi, Yasuhiro Gotoh, Yuta Shimada, Shuto Ikeda, Tetsuya Hayashi, Kanako Tago, Masahito Hayatsu, Satoshi Tsuneda
ISME Communications.2025;[Epub] CrossRef -
Prevalence, diversity, and parasitism of tailed prophages in
Vibrio harveyi
Ruijie Ma, Huiying Zhong, Rui Zhang, Michael J. Imperiale
mSphere.2025;[Epub] CrossRef -
Pantoea phosphatilytica sp. nov. and Pantoea phyllosphaerae sp. nov., two phosphate-solubilizing and siderophore-producing bacteria isolated from citrus phyllosphere
Songzhen Yang, Jiali Li, Jun Zhang, Haoxiang Luo, Honghong Dong, Ming-Rong Deng, Honghui Zhu, Guang-Da Feng
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Description of high-altitude, cold-adaptive, metabolically versatile
Dyadobacter aurulentus
sp. nov. isolated from Western Himalayan farmland soils
Amit Yadav, Kiran Kirdat, Vipool Thorat, Ngangyola Tuikhar, Kirti Chundawat, Tushar Lodha, Bhavesh Tiwarekar, Umera Patwekar, Malad Mubarak, Shuchi Shastri, Saurabh Kumar, Yogesh Shouche, Reeta Goel, Rup Lal
Microbiology Spectrum.2025;[Epub] CrossRef - First Report of Bacterial Fruit Rot of Banana Caused by Dickeya fangzhongdai in China
X. T. Liu, C. Ma, Y. M. Zhu, E. X. Zhou
Plant Disease.2025; 109(12): 2583. CrossRef -
Flavobacterium movens sp. nov. and Flavobacterium mesophilum sp. nov., two novel bacteria isolated from rhizosphere soil of Litchi (Litchi chinensis Sonn.)
Yijie Dong, Xing Wang, Yang Liu, Guang-Da Feng, Qing Yao, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Metagenomic Insights Into the Ecology, Taxonomy and Metabolic Capabilities of ‘Candidatus Darwinibacteriales’ Ord. Nov. (Formerly MBA03), a Potential Key Player in Anaerobic Digestion
Roser Puchol‐Royo, Javier Pascual, Asier Ortega‐Legarreta, Pascal Otto, Jeroen Tideman, Sjoerd‐Jan de Vries, Christian Abendroth, Kristie Tanner, Manuel Porcar, Adriel Latorre‐Perez
Microbial Biotechnology.2025;[Epub] CrossRef - Microbacterium insectihabitans sp. nov., Isolated from Larvae of Allomyrina dichotoma
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Current Microbiology.2025;[Epub] CrossRef -
Foliimonas ilicis gen. nov., sp. nov., a carbon monoxide-oxidizing bacterium belonging to a novel genus of the family Phyllobacteriaceae isolated from leaves of Ilex aquifolium
Sinchan Banerjee, András Táncsics, Zeqin Wu, Tudor Stafioiu, Jiacheng Gao, Erika Tóth, Erzsébet Baka, Gary Bending, Hendrik Schäfer
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Diverse biofilm-forming Sphingomonadaceae represent twelve novel species isolated from glaciers on the Tibetan Plateau
Dou Han, Yu-Hua Xin, Qing Liu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Niabella insulamsoli sp. nov., Isolated From Soil and Showing Potential Cosmetic Functions with Flexirubin Extract
Nhi Thi Ai Nguyen, Jaisoo Kim
Current Microbiology.2025;[Epub] CrossRef - Mucilaginibacter florum sp. nov., isolated from the flower of Coreopsis grandiflora and Mucilaginibacter oryzagri sp. nov., isolated from rice paddy soil in Korea
Parthiban Subramanian, Jun Heo, Daseul Lee, Seunghwan Kim, Hyorim Choi, Yunhee Choi, Yiseul Kim
Journal of Microbiology.2025; 63(12): e2509014. CrossRef - N2-Fixing Fontibacillus forbon sp. nov., a Novel Species from the Plant Rhizosphere
Rui Hu, Yimin Shang, Weilong Zhang, Chengao Song, Renzong Wang, Sanfeng Chen
Microorganisms.2025; 14(1): 49. CrossRef -
Nocardioides secundeburneus sp. nov. and Gordonia aurantiaca sp. nov., isolated from soil
Jisu Kim, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Subin Yook, Jung-Hoon Yoon, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-based reclassification of Fontibacillus solani Ramirez-Bahena et al. 2015 as a later heterotypic synonym of Fontibacillus panacisegetis Lee et al. 2011
Aleyna Nalcaoglu Senocak, Kadriye Inan Bektas, Sabriye Canakci, Ali Osman Belduz
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Croceiramulus getboli gen. nov., sp. nov., a marine bacterium isolated from the tidal flat
Yeonjae Yoo, Sang Hyun Lee, Dae Young Kwon, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Jae-Jin Kim
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Aquibaculum arenosum gen. nov., sp. nov., a novel member of the family Rhodovibrionaceae, isolated from sea sand
Soyeon Ahn, David Hyung-Sun Choi, Veeraya Weerawongwiwat, Jong-Hwa Kim, Ampaitip Sukhoom, Wonyong Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - The analysis of complete genome sequence and comparative genomics of Vibrio parahaemolyticus LF1113 in Hainan
Linlin Hu, Aiyun Meng, Zhigang Tu, Shuwen Jia, Qingming Liu, Fuxiao Chen
Infection, Genetics and Evolution.2024; 119: 105574. CrossRef - Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria
Subhash Yadav, Michel Koenen, Nicole J. Bale, Wietse Reitsma, Julia C. Engelmann, Kremena Stefanova, Jaap S. Sinninghe Damsté, Laura Villanueva
Microbiome.2024;[Epub] CrossRef - Extremely oligotrophic and complex-carbon-degrading microaerobic bacteria from Arabian Sea oxygen minimum zone sediments
Jagannath Sarkar, Mahamadul Mondal, Sabyasachi Bhattacharya, Subhajit Dutta, Sumit Chatterjee, Nibendu Mondal, Saran N, Aditya Peketi, Aninda Mazumdar, Wriddhiman Ghosh
Archives of Microbiology.2024;[Epub] CrossRef - Brooklawnia propionicigenes sp. nov., a facultatively anaerobic, propionate-producing bacterium isolated from a methanogenic reactor treating waste from cattle farms
Yasumitsu Akita, Atsuko Ueki, Akio Tonouchi, Yoshimichi Sugawara, Sachi Honma, Nobuo Kaku, Katsuji Ueki
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Reclassification of Aestuariicella albida as Pseudomaricurvus albidus comb. nov. and Aestuariicella hydrocarbonica as Pseudomaricurvus hydrocarbonicus comb. nov. Based on Comparative Genomics and Molecular Synapomorphies
Jake Adolf V. Montecillo, Merell P. Billacura, Maria Distressa G. Billacura
Current Microbiology.2024;[Epub] CrossRef - Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematicsin addressing challenges in the meta-data era
Jian-Yu Jiao, Rashidin Abdugheni, Dao-Feng Zhang, Iftikhar Ahmed, Mukhtiar Ali, Maria Chuvochina, Svetlana N Dedysh, Xiuzhu Dong, Markus Göker, Brian P Hedlund, Philip Hugenholtz, Kamlesh Jangid, Shuang-Jiang Liu, Edward R B Moore, Manik Prabhu Narsing Ra
National Science Review.2024;[Epub] CrossRef - Terrirubrum flagellatum gen. nov., sp. nov. of Terrirubraceae fam. nov. and Lichenibacterium dinghuense sp. nov. from forest soil and proposal of Rhodoblastaceae fam. nov.
Xiu-yin Guo, Qiu-mei Zhang, Jia-cheng Fu, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Shewanella goraebulensis sp. nov., isolated from sea water
Yong-Suk Lee, Hae-Rin Jeong, Eun-Jung Hwang, Maheshkumar Prakash Patil, Yong Bae Seo, Gun-Do Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Acidovorax benzenivorans sp. nov., a novel aromatic hydrocarbon-degrading bacterium isolated from a xylene-degrading enrichment culture
Anna Bedics, András Táncsics, Sinchan Banerjee, Erika Tóth, Péter Harkai, Gerda Georgina Gottschall, Károly Bóka, Balázs Kriszt
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Halosquirtibacter laminarini gen. nov., sp. nov. and Halosquirtibacter xylanolyticus sp. nov., marine anaerobic laminarin and xylan degraders in the phylum Bacteroidota
Tra T. H. Nguyen, Tien Q. Vuong, Ho Le Han, Song-Gun Kim
Scientific Reports.2024;[Epub] CrossRef - Improving plant salt tolerance through Algoriphagus halophytocola sp. nov., isolated from the halophyte Salicornia europaea
Yuxin Peng, Dong Hyun Cho, Zalfa Humaira, Yu Lim Park, Ki Hyun Kim, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2024;[Epub] CrossRef -
Microbacterium abyssi sp. nov. and Microbacterium limosum sp. nov., two new species of the genus Microbacterium, isolated from deep-sea sediment samples
Yihan Ding, Xiaorui Ding, Yiting Chen, Shiping Wei, Gaiyun Zhang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Terrihabitans rhizophilus sp. nov., isolated from the rhizosphere soil of plant in temperate semi-arid steppe
Runze Bao, Huiling Guo, Yungang Liang, Kai Tang, Fuying Feng, Jianyu Meng
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Fictibacillus fluitans sp. nov., isolated from freshwater pond
Amit Yadav, Akanksha Maurya, Yash Bhavsar, Ruchi Teware, Agrima Bhatt, Elaine DaCosta, Vipool Thorat, Kiran Kirdat, Syed G. Dastager
Archives of Microbiology.2024;[Epub] CrossRef - Microbial acidification by N, S, Fe and Mn oxidation as a key mechanism for deterioration of subsea tunnel sprayed concrete
Sabina Karačić, Carolina Suarez, Per Hagelia, Frank Persson, Oskar Modin, Paula Dalcin Martins, Britt-Marie Wilén
Scientific Reports.2024;[Epub] CrossRef -
Xanthomonas rydalmerensis sp. nov., a non-pathogenic member of Group 1 Xanthomonas
Daniel J. E. McKnight, Johanna Wong-Bajracharya, Efenaide B. Okoh, Fridtjof Snijders, Fiona Lidbetter, John Webster, Mathew Haughton, Aaron E. Darling, Steven P. Djordjevic, Daniel R. Bogema, Toni A. Chapman
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments
Zhen Chen, Shizheng Xiang, Yao Lu, Qiliang Lai, Chunming Dong, Jianyang Li, Guizhen Li, Zongze Shao
Frontiers in Marine Science.2024;[Epub] CrossRef - Genomic Functional Analysis of Novel Radiation-Resistant Species of Knollia sp. nov. S7-12T from the North Slope of Mount Everest
Xinyue Wang, Yang Liu, Zhiyuan Chen, Kexin Wang, Guangxiu Liu, Tuo Chen, Binglin Zhang
Microorganisms.2024; 12(9): 1748. CrossRef -
Massilia litorea sp. nov., Marinobacter salinisoli sp. nov. and Rhodobacter xanthinilyticus sp. nov., isolated from coastal environments
Banseok Lee, Donghoon Shin, Juseong Kim, Su-Kyoung Shin, Hana Yi, Min-gyung Baek
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Unveiling unique microbial nitrogen cycling and nitrification driver in coastal Antarctica
Ping Han, Xiufeng Tang, Hanna Koch, Xiyang Dong, Lijun Hou, Danhe Wang, Qian Zhao, Zhe Li, Min Liu, Sebastian Lücker, Guitao Shi
Nature Communications.2024;[Epub] CrossRef - Auxin production and plant growth promotion by Microbacterium albopurpureum sp. nov. from the rhizoplane of leafless Chiloschista parishii Seidenf. orchid
Elena A. Tsavkelova, Elena A. Volynchikova, Natalia V. Potekhina, Konstantin V. Lavrov, Alexander N. Avtukh
Frontiers in Plant Science.2024;[Epub] CrossRef -
Paenibacillus suaedae sp. nov. and Paenibacillus violae sp. nov., isolated from the roots of Suaeda japonica Makino and Viola mandshurica W. Becker with plant growth-promoting potential
Inhyup Kim, Sunho Park, Yonghee Jung, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Vagococcus jeotgali sp. nov., isolated from cutlassfish jeotgal, a traditional Korean fermented seafood
Sung-Hong Joe, Ah-In Yang, Bora Kim, Hae-In Joe, Yeongjin Hong, Na-Ri Shin
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Sphingomonas rustica sp. nov. and Sphingomonas agrestis sp. nov., novel carotenoid-producing bacterial species isolated from farm soil
Hyunji Lee, Inhyup Kim, Sunho Park, Haejin Woo, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Lapidilactobacillus salsurivasis sp. nov., Secundilactobacillus muriivasis sp. nov., and Streptococcus parasalivarius sp. nov., isolated from Traditional Chinese Pickle
Ting-Yu Wang, Chun Yan Li, Hao Wang, Chun Tao Gu
Current Microbiology.2024;[Epub] CrossRef -
Unprecedented N
2
O production by nitrate-ammonifying
Geobacteraceae
with distinctive N
2
O isotopocule signatures
Zhenxing Xu, Shohei Hattori, Yoko Masuda, Sakae Toyoda, Keisuke Koba, Pei Yu, Naohiro Yoshida, Zong-Jun Du, Keishi Senoo, Derek R. Lovley, Daniel R Bond
mBio.2024;[Epub] CrossRef -
Pseudomonas hefeiensis sp. nov., isolated from the rhizosphere of multiple cash crops in China
Kaiji Liao, Qiang Li, Jun-Zhou Li, Hai-Lei Wei
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Speluncibacter jeojiensis gen. nov. sp. nov., a novel bacterium of the order Mycobacteriales isolated from a cave and a proposal of Speluncibacteraceae fam. nov.
Soon Dong Lee, Hong-Lim Yang, Jong-Heon Han, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - A rare urinary tract infection of multidrug-resistant Chryseobacterium urinae sp. nov. isolated from a diabetic, non-catheterized patient
Agrima Bhatt, Sujata Pujari, Shailesh Mantri, Kiran Kirdat, Lucky Thakkar, Reshma Poojary, Sunil Kuyare, Kritika Patil, Amit Yadav
Archives of Microbiology.2024;[Epub] CrossRef - Roseihalotalea indica gen. nov., sp. nov., a halophilic Bacteroidetes from mesopelagic Southwest Indian Ocean with higher carbohydrate metabolic potential
Beihan Chen, Mingzhe Zhang, Dan Lin, Jianing Ye, Kai Tang
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Phytopathogenic Curtobacterium flaccumfaciens Strains Circulating on Leguminous Plants, Alternative Hosts and Weeds in Russia
Anna D. Tokmakova, Rashit I. Tarakanov, Anna A. Lukianova, Peter V. Evseev, Lyubov V. Dorofeeva, Alexander N. Ignatov, Fevzi S.-U. Dzhalilov, Sergei A. Subbotin, Konstantin A. Miroshnikov
Plants.2024; 13(5): 667. CrossRef - Genomic and functional insights of a mucin foraging Rhodopirellula halodulae sp. nov.
PK Sreya, Atham Hari Naga Papa Rao, Gandham Suresh, Chintalapati Sasikala, Chintalapati Venkata Ramana
Systematic and Applied Microbiology.2024; 47(4): 126523. CrossRef -
Dyadobacter helix sp. nov. and Dyadobacter linearis sp. nov., from drinking water
Teresa Lucena, María J. Pujalte, David R. Arahal
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Preliminary comparative genomics analysis among Corynebacterium kroppenstedtii complex necessitates a reassessment of precise species associated with mastitis
Ying Huang, Ming-Hui Song, Shun-Guang Li, Hong- Yu Shen, Ping-Hua Qu, Dao-Feng Zhang
Journal of Applied Microbiology.2024;[Epub] CrossRef -
Ruicaihuangia caeni gen. nov., sp. nov., a novel taxon within the family Microbacteriaceae isolated from sludge
Le Liu, Keke Geng, Yu Lv, Qi Zhang, Gang Chen, Dan Cheng, Jiahui Shao, Jian He, Qirong Shen
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Isolation and characterization of two new species, Hymenobacter mellowenesis sp. nov. and Hymenobacter aranciens sp. nov., from soil
Seonjae Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
Archives of Microbiology.2024;[Epub] CrossRef - Characteristics of a lipase ArEstA with lytic activity against drug-resistant pathogen from a novel myxobacterium, Archangium lipolyticum sp. nov.
Yang Zhou, Haixin Chen, Hongxia Jiang, Qing Yao, Honghui Zhu
Frontiers in Microbiology.2024;[Epub] CrossRef -
Lineage-specific evolution of
Aquibium
, a close relative of
Mesorhizobium
, during habitat adaptation
Minkyung Kim, Wonjae Kim, Yerim Park, Jaejoon Jung, Woojun Park, Arpita Bose
Applied and Environmental Microbiology.2024;[Epub] CrossRef - Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
Zaki Saati-Santamaría, José David Flores-Félix, José M. Igual, Encarna Velázquez, Paula García-Fraile, Eustoquio Martínez-Molina
Journal of Molecular Evolution.2024; 92(2): 169. CrossRef - Novel microbiota Mesosutterella faecium sp. nov. has a protective effect against inflammatory bowel disease
Seung Yeob Yu, Byeong Seob Oh, Seoung Woo Ryu, Jeong Eun Bak, Eun Seo Heo, Jeong Chan Moon, Jae-Ho Jeong, Ju Huck Lee
Frontiers in Microbiology.2024;[Epub] CrossRef - Isoptericola haloaureus sp. nov., a dimorphic actinobacterium isolated from mangrove sediments of southeast India, implicating biosaline agricultural significance through nitrogen fixation and salt tolerance genes
Munisamy Prathaban, Ragothaman Prathiviraj, Mythili Ravichandran, Sharmila Devi Natarajan, Murugesan Sobanaa, S. Hari Krishna Kumar, Varadharaju Chandrasekar, Joseph Selvin
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Isolation and Characterization of Paracoccus maritimus sp. nov., from Intertidal Sediment
Libo Yu, Guangxin Xu, Shiping Wei, Qiliang Lai, Zongze Shao
Current Microbiology.2024;[Epub] CrossRef -
Gilvirhabdus luticola gen. nov., sp. nov., a mesophilic and halophilic bacterium isolated from tidal flat sediment
Jaincy N. Jayan, Hee-Su Kim, Sathiyaraj Srinivasan, Hyung-Seop Kim, Jae-Yon Yu, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Leuconostoc koreense sp. nov., isolated from kimchi, a fermented vegetable
Min Ji Lee, Jeong Ui Yun, Sohee Nam, Mi-Ja Jung, Yeon Bee Kim, Yujin Kim, Jisu Lee, Dae Gyu Choi, Dae Seung Lee, Seong Woon Roh, Tae Woong Whon, Che Ok Jeon, Se Hee Lee
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Aerobic anoxygenic phototrophs play important roles in nutrient cycling within cyanobacterial Microcystis bloom microbiomes
Haiyuan Cai, Christopher J. McLimans, Helong Jiang, Feng Chen, Lee R. Krumholz, K. David Hambright
Microbiome.2024;[Epub] CrossRef -
Arthrobacter horti sp. nov., isolated from mountain soil
Mingyeong Park, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Sphingomicrobium clamense sp. nov., Isolated from Sediment of Clam Island Beach in China
Xing Li, Lulu Mu, Yanfeng Zhang, Zimu Zhu, Yazhong Xiao, Zemin Fang
Current Microbiology.2024;[Epub] CrossRef -
Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam
Aurelien Carlier, Marine Beaumel, Sandra Moreau, Tessa Acar, Thibault Géry Sana, Margo Cnockaert, Peter Vandamme
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Azospirillum isscasi sp. nov., a bacterium isolated from rhizosphere soil of rice
Hui Wang, Haiyang Jin, Zhe Chen, Wenjun Li, Jing Ma, Tianlong Hu, Qi Liu, Yanhui Zhang, Xingwu Lin, Zubin Xie
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genome Mining Analysis Uncovers the Previously Unknown Biosynthetic Capacity for Secondary Metabolites in Verrucomicrobia
Xue Di, Peng Li, Jingxuan Wang, Vincent Nowak, Shuai Zhi, Meiling Jin, Liwei Liu, Shan He
Marine Biotechnology.2024; 26(6): 1324. CrossRef - Metabolic and phylogenetic diversity in the phylum Nitrospinota revealed by comparative genome analyses
Linnea F M Kop, Hanna Koch, Mike S M Jetten, Holger Daims, Sebastian Lücker
ISME Communications.2024;[Epub] CrossRef - Key bacteria decomposing animal and plant detritus in deep sea revealed via long-term in situ incubation in different oceanic areas
Jianyang Li, Chunming Dong, Shizheng Xiang, Huiyang Wei, Qiliang Lai, Guangshan Wei, Linfeng Gong, Zhaobin Huang, Donghui Zhou, Guangyi Wang, Zongze Shao
ISME Communications.2024;[Epub] CrossRef - Xiashengella succiniciproducens gen. nov., sp. nov., a succinate-producing bacterium isolated from an anaerobic digestion tank in the family Marinilabiliaceae of the order Bacteroidales
Hao-Jie Huang, Xi Zhang, Xin-Wei Sun, Biao Chen, Xiu-Tong Li, Nan Zhou, Rashidin Abdugheni, Qiu-Yin Cheng, Tie-Jun Zhang, Yao Liu, Yong Jiang, Ye Deng, Shuang-Jiang Liu, Cheng-Ying Jiang
Archives of Microbiology.2024;[Epub] CrossRef - Comparative genome analysis of the genus Marivirga and proposal of two novel marine species: Marivirga arenosa sp. nov., and Marivirga salinae sp. nov.
Neak Muhammad, Forbes Avila, Song-Gun Kim
BMC Microbiology.2024;[Epub] CrossRef -
Lacticaseibacillus pabuli sp. nov., isolated from fermented cattle feed
Hyorim Choi, Yiseul Kim, Seunghwan Kim, Soon-Wo Kwon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Hanako Naito, Tomomi Yamada, Moriyuki Hamada, Jun Heo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Resolving the metabolism of monolignols and other lignin-related aromatic compounds in Xanthomonas citri
Damaris B. Martim, Anna J. V. C. Brilhante, Augusto R. Lima, Douglas A. A. Paixão, Joaquim Martins-Junior, Fernanda M. Kashiwagi, Lucia D. Wolf, Mariany S. Costa, Fabrícia F. Menezes, Rafaela Prata, Matheus C. Gazolla, Juliana A. Aricetti, Gabriela F. Per
Nature Communications.2024;[Epub] CrossRef - Pedobacter rhodius sp. nov. and Pedobacter punctiformis sp. nov., isolated from soil
Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - A comparative genomic study of a hydrocarbon-degrading marine bacterial consortium
Jorge Rojas-Vargas, Eria A. Rebollar, Alejandro Sanchez-Flores, Liliana Pardo-López, Pankaj Kumar Arora
PLOS ONE.2024; 19(8): e0303363. CrossRef -
Gemmobacter denitrificans sp. nov., a denitrifying bacterium, isolated from pond water for Litopenaeus vannamei
Mingxia Zhang, Yulian Zhang, Fan Yang, Qing Yao, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Janibacter alittae sp. nov., an actinobacterium isolated from the gut of marine sandworm (Alitta virens)
Bora Kim, Min Ok Jun, Ah-In Yang, Sung-Hong Joe, Hae-In Joe, Hojun Sung, Ki Hyun Kim, Hyun Jung Kim, Na-Ri Shin
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Sporosarcina jeotgali sp. nov., Sporosarcina oncorhynchi sp. nov., and Sporosarcina trichiuri sp. nov., Isolated from Jeotgal, a Traditional Korean Fermented Seafood
Ah-In Yang, Bora Kim, Sung-Hong Joe, Hae-In Joe, Hanna Choe, Ki Hyun Kim, Min Ok Jun, Na-Ri Shin
Journal of Microbiology.2024; 62(4): 285. CrossRef - Characterization of Bacillus velezensis TJS119 and its biocontrol potential against insect pathogens
Kook-Il Han, Young Ho Nam, Byung Su Hwang, Jeong Tae Kim, Jum Oc Jung, Eunsun Kim, Mi-Hwa Lee
Frontiers in Microbiology.2024;[Epub] CrossRef - Altererythrobacter litoralis sp. nov., a New Carotenoid-Producing Member of the Family Erythrobacteraceae, Isolated from a Tidal Flat Sediment
Yang Liu, Tao Pei, Juan Du, Mingxia Zhang, Honghui Zhu
Current Microbiology.2024;[Epub] CrossRef -
Pengzhenrongella frigida sp. nov., isolated from a glacier
Qing Liu, Lei-Lei Yang, Yu-Hua Xin
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Isolation and identification of uric acid-dependent
Aciduricibacillus chroicocephali
gen. nov., sp. nov. from seagull feces and implications for hyperuricemia treatment
Wenxuan Liu, Fulong Nan, Fengjun Liu, Xiaoli Yang, Zonghui Li, Shasha Jiang, Xianjuan Zhang, Jun Li, Meng Yu, Yunyang Wang, Bin Wang, Vincent B. Young
mSphere.2024;[Epub] CrossRef - Ciceribacter sichuanensis sp. nov., a plant growth promoting rhizobacterium isolated from root nodules of soybean in Sichuan, China
Yanqin Zhang, Yuanxue Chen, Petri Penttinen, Xing Wang, Ying Quan, Licheng Wen, Miao Yang, Xiaoping Zhang, Qiang Chen, Lingzi Zhang, Junjie Zhang, Xiaoxia Zhang, Kaiwei Xu
Antonie van Leeuwenhoek.2024;[Epub] CrossRef -
Clostridium lapidicellarium sp. nov. and Clostridium moutaii sp. nov., two species isolated from fermentation cellar-producing sauce-flavour Chinese baijiu
Fan Yang, Hui Wang, Liang-Qiang Chen, Nan Zhou, Jian-Jun Lu, Xiu-Xin Pu, Bo Wan, Li Wang, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Paracoccus actinidiae sp.nov., a novel bacterium isolated from kiwi tree rhizosphere soil
Chenqi Xu, Han Peng, He Li, Xinran Xie, Siwei Chen, Junhao Dai, Hong Ren
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - The Type Strain of Bifidobacterium indicum Scardovi and Trovatelli 1969 (Approved Lists 1980) is ATCC 25912, not DSM 20214, and Rejection to Reclassify Bifidobacterium coryneforme as Bifidobacterium indicum
Cheng-Shan Jiang, Chun Yan Li, Chun Tao Gu
Current Microbiology.2024;[Epub] CrossRef -
Actinomadura monticuli sp. nov., isolated from Darangshi Oreum (a volcanic cone), and the reclassification of Actinomadura glauciflava Lu et al. 2003 as a later heterotypic synonym of Actinomadura luteofluorescens (Shinobu 1962) Preobrazhensk
Soon Dong Lee, Hong Lim Yang, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Streptococcus taoyuanensis sp. nov., a Novel Species Isolated from a Patient with Bacteremia
Chien-Yu Lee, Chin-Kan Chan, Yi-Sheng Chen, Yun-Shien Lee, Shih-Ting Lin, Yu-Chung Chang, Hui-Chung Wu, Jia-rong Zhang, Hong-yu Chen, Li-Ting Wang
Current Microbiology.2024;[Epub] CrossRef - Difference in gut microbial dysbiotic patterns between body-first and brain-first Parkinson's disease
Don Gueu Park, Woorim Kang, In-Ja Shin, Mauricio Chalita, Hyun-Seok Oh, Dong-Wook Hyun, Hyun Kim, Jongsik Chun, Young-Sil An, Eun Jeong Lee, Jung Han Yoon
Neurobiology of Disease.2024; 201: 106655. CrossRef -
Acidithiobacillus acidisediminis sp. nov., an acidophilic sulphur-oxidizing chemolithotroph isolated from acid mine drainage sediment
Xiu-Tong Li, Zong-Lin Liang, Ye Huang, Zhen Jiang, Zhen-Ni Yang, Nan Zhou, Ying Liu, Shuang-Jiang Liu, Cheng-Ying Jiang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Sphingomonas Immobilis sp. nov., and Sphingomonas natans sp. nov. bacteria isolated from soil
Inyoung Choi, Sathiyaraj Srinivasan, Myung Kyum Kim
Archives of Microbiology.2024;[Epub] CrossRef - Roseateles agri sp. nov., a New Species Isolated from Fresh Soil in Uiwang, South Korea
Yelim You, Jaisoo Kim
Diversity.2024; 16(5): 279. CrossRef - Description of Roseibium sediminicola sp. nov. Isolated from Sediment of a Tidal Flat on the Yellow Sea Coast
Soyeon Ahn, Veeraya Weerawongwiwat, Yunjeong Lee, David Hyung-Sun Choi, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
Current Microbiology.2024;[Epub] CrossRef - Chemolithoautotrophic diazotrophs dominate dark nitrogen fixation in mangrove sediments
Shasha Wang, Lijing Jiang, Zhuoming Zhao, Zhen Chen, Jun Wang, Karine Alain, Liang Cui, Yangsheng Zhong, Yongyi Peng, Qiliang Lai, Xiyang Dong, Zongze Shao
The ISME Journal.2024;[Epub] CrossRef -
Fontisubflavum oceani gen. nov., sp. nov., isolated from the deep-sea cold seep water of South China Sea
Xiu-dan Xu, Dan-dan Zhou, Bin-zhe Zhang, Jian Zhang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Paenibacillus glufosinatiresistens sp. nov., a glufosinate-resistant bacterium isolated from sludge
Yan Wu, Yuwen Yang, Minglai Wan, Le Chen, Ye Yuan, Jian He, Baolong Zhang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Erythrobacter oryzae sp. nov., isolated from rice paddy soil
Hyo-Jin Lee, Ji-Soo Hwang, Eun-kyung Lee, Kyung-Sook Whang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - SeqCode facilitates naming of South African rhizobia left in limbo
Melandré van Lill, Stephanus N. Venter, Esther K. Muema, Marike Palmer, Wai Y. Chan, Chrizelle W. Beukes, Emma T. Steenkamp
Systematic and Applied Microbiology.2024; 47(2-3): 126504. CrossRef - A Novel Strain Burkholderia theae GS2Y Exhibits Strong Biocontrol Potential Against Fungal Diseases in Tea Plants (Camellia sinensis)
Yijie Dong, Xing Wang, Guang-Da Feng, Qing Yao, Honghui Zhu
Cells.2024; 13(21): 1768. CrossRef - Clostridium omnivorum sp. nov., isolated from anoxic soil under the treatment of reductive soil disinfestation
Atsuko Ueki, Akio Tonouchi, Nobuo Kaku, Sachi Honma, Katsuji Ueki
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Alkalimonas mucilaginosa sp. nov. and Alkalimonas cellulosilytica sp. nov. isolated from alkaline Lonar lake, India
Sonia Thite, Devika Godbole, Mahima Debnath, Agrima Bhatt, Amit Yadav, Tushar Lodha, Neetha Joseph, Kiran Kirdat, Dibyajyoti Boruah, Roohani Sharma, Amaraja Joshi
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Genome-based taxonomic classification of the genus Sulfitobacter along with the proposal of a new genus Parasulfitobacter gen. nov. and exploring the gene clusters associated with sulfur oxidation
Xiaokun Xu, Mengdan He, Qingjie Xue, Xiuzhen Li, Ang Liu
BMC Genomics.2024;[Epub] CrossRef -
Aurantiacibacter flavus sp. nov. and Aurantiacibacter gilvus sp. nov., isolated from the mudflat of Suaeda japonica colonies
Sunho Park, Inhyup Kim, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Ochrobactrum chromiisoli sp. nov., Isolated from Chromium-Contaminated Soil
Yi Yang, Zhe Xu, Li Yang, Meng-yao Hu, Guang-yang Jiang, Jia Chen, Yi-chen Yang, Yongqiang Tian
Current Microbiology.2024;[Epub] CrossRef - Thiosulfate oxidation and autotrophy potential by marine prevalent heterotrophic bacteria of genus Marinobacter
Fei Xu, Xiang Zeng, Yadong Gong, Zongze Shao
Acta Oceanologica Sinica.2024; 43(8): 89. CrossRef -
Lacticaseibacillus parahuelsenbergensis sp. nov., Lacticaseibacillus styriensis sp. nov. and Lacticaseibacillus zeae subsp. silagei subsp. nov., isolated from different grass and corn silage
Monika Grabner F., Monika Grabner H., Hermine Schein, Andrea Schrank, Manuela Töglhofer, Elisabeth Weidenholzer, Christian Rückert-Reed, Tobias Busche, Marlene Buchebner-Jance
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Draft genome sequence of 'Candidatus Phytoplasma asteris,’ strain SW86 associated with sandal spike disease (SSD)
Kiran Kirdat, Bhavesh Tiwarekar, K. N. Manjula, S. Padma, Shivaji Sathe, R. Sundararaj, Amit Yadav
3 Biotech.2024;[Epub] CrossRef - Cold-adapted Exiguobacterium sibiricum K1 as a potential bioinoculant in cold regions: Physiological and genomic elucidation of biocontrol and plant growth promotion
Sareeka Kumari, Anil Kumar, Ayush Lepcha, Rakshak Kumar
Gene.2024; 916: 148439. CrossRef - EcoGenoRisk: Developing a computational ecological risk assessment tool for synthetic biology
Anna Ulanova, Cresten Mansfeldt
Environmental Pollution.2024; 346: 123647. CrossRef - Description of Aliirhizobium terrae sp. nov., A Plant Growth-Promoting Bacterium Isolated from a Maize-Rice Rotation Agriculture Field
Shih-Yao Lin, Tzu-Yu Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
Current Microbiology.2024;[Epub] CrossRef - Novel oceanic cyanobacterium isolated from Bangaram island with profound acid neutralizing ability is proposed as Leptolyngbya iicbica sp. nov. strain LK
Subhajeet Dutta, Shreya Kothari, Deeksha Singh, Samrat Ghosh, Aditya Narayan Sarangi, Smruti Sanjita Behera, Satish Prajapati, Prasanta Kumar Sinha, Asharani Prusty, Sucheta Tripathy
Molecular Phylogenetics and Evolution.2024; 197: 108092. CrossRef - Sulfide Toxicity as Key Control on Anaerobic Oxidation of Methane in Eutrophic Coastal Sediments
Paula Dalcin Martins, João P. R. C. de Monlevad, Maider J. Echeveste Medrano, Wytze Klaas Lenstra, Anna Julia Wallenius, Martijn Hermans, Caroline P. Slomp, Cornelia Ulrike Welte, Mike S. M. Jetten, Niels A. G. M. van Helmond
Environmental Science & Technology.2024; 58(26): 11421. CrossRef - Phylogeny and genomic analysis of Shewanella cutis sp. nov., isolated from freshwater pufferfish
Lipika Das, Ritu Rani Archana Kujur, Tanmoy Debnath, Subrata K. Das
Folia Microbiologica.2024; 69(4): 723. CrossRef -
Aequorivita flava sp. nov., isolated from deep-sea sediments
Xiangwei Chen, Jinmei Xia, Xiaoteng Fu, Qiliang Lai, Jianning Wang, Yaping Du, Xiupian Liu, Guangyu Li, Xixiang Tang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Paraflavitalea pollutisoli sp. nov., Pollutibacter soli gen. nov. sp. nov., Polluticoccus soli gen. nov. sp. nov., and Terrimonas pollutisoli sp. nov., four new members of the family Chitinophagaceae from polluted soil
Ze-Shen Liu, Xiao-Kang Wang, Ke-Huan Wang, Mei-Ling Yang, De-Feng Li, Shuang-Jiang Liu
Systematic and Applied Microbiology.2024; 47(2-3): 126503. CrossRef -
Sinomonas terricola sp. nov., a plant-beneficial bacterium isolated from litchi rhizosphere soil in Guangdong, China
Jiaxin Wan, Yang Zhou, Hui Sun, Huaping Li, Qing Yao, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genetic and phenotypic diversity of Flavobacterium psychrophilum isolates from Czech salmonid fish farms
Vera Vaibarova, Stanislava Kralova, Miroslava Palikova, Jana Schwarzerova, Julie Nejezchlebova, Darina Cejkova, Alois Cizek
BMC Microbiology.2024;[Epub] CrossRef -
Citrobacter enshiensis sp. nov., isolated from seleniferous soil
Sasa Zhang, Kui Li, Jing Peng, Haoyang Wang, Jiayin Sun, Yanbin Guo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Distinct genome trichotomy in members of Hapalosiphonaceae is guided by habitat adaptation with Mastigocladus laminosus UU774 as a case study
Aribam Geeta, Mayuri Mukherjee, Bornita Das, Subhajeet Dutta, Asharani Prusty, Samrat Ghosh, Anashuya Biswas Raha, Mousumi Poddar Sarkar, Sucheta Tripathy
Algal Research.2024; 82: 103603. CrossRef - Microbacterium aquilitoris sp. nov. and Microbacterium gwkjiense sp. nov., isolated from beach
Soon Dong Lee, Hong Lim Yang, Ji-Sun Kim, In Seop Kim
Archives of Microbiology.2024;[Epub] CrossRef - Microvirga sesbaniae sp. nov. and Microvirga yunnanensis sp. nov., Pink-Pigmented Bacteria Isolated from Root Nodules of Sesbania cannabina (Retz.) Poir.
Nan Shi, Teng He, Huifang Qin, Ziye Wang, Shenghao You, Entao Wang, Guoli Hu, Fang Wang, Miao Yu, Xiaoyun Liu, Zhenyu Liu
Microorganisms.2024; 12(8): 1558. CrossRef -
Microbacterium horticulturae sp. nov., a novel actinobacterium isolated from flowerpot soil
Hyorim Choi, Yunhee Choi, Seunghwan Kim, Yiseul Kim, Hanako Naito, Tomomi Yamada, Moriyuki Hamada, NamJung Kim, Yonghoon Lee, Jun Heo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Comparative genomics of the genus Halioglobus reveals the genetic basis for the reclassification of Halioglobus pacificus as Parahalioglobus pacificus gen. nov. comb. nov
Jake Adolf V. Montecillo
International Microbiology.2024; 27(6): 1831. CrossRef -
Paraburkholderia largidicola sp. nov., a gut symbiont of the bordered plant bug Physopelta gutta
Reona Yashima, Yuan Terata, Kaoru Sakamoto, Miho Watanabe, Kazutaka Takeshita
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Sphingomonas longa sp. nov., Sphingomonas mollis sp. nov. and Sphingomonas aurea sp. nov.: three novel Sphingomonas species isolated from soil
Eo Jin Kim, Soo Hyun Maeng, Myung Kyum Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genomics of the Thermophilic Bacterium Thermosulfidibacter takaii Reveals Novel Lineage of Deep-Branching Bacterial Phylum
Jake Adolf V. Montecillo
Indian Journal of Microbiology.2024; 64(2): 762. CrossRef - Hyalangiumruber sp. nov, characterization of a novel myxobacterium strain s54d21 and their secondary metabolites
Yi Zang, Xianjiao Zhang, Zhe Wang, Qingyi Tong, Yang Zhou, Qing Yao, Honghui Zhu
Frontiers in Microbiology.2024;[Epub] CrossRef -
Achromobacter seleniivolatilans sp. nov. and Buttiauxella selenatireducens sp. nov., isolated from the rhizosphere of selenium hyperaccumulator Cardamine hupingshanesis
Sasa Zhang, Yi Liu, Hao Wang, Zhongnan Xu, Jing Peng, Qiaolin Xu, Kui Li, Haoyang Wang, Yanbin Guo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Draft Genome Sequence Analyses of Two Novel Marinobacter suadae sp. nov. and Wenyingzhuangia gilva sp. nov. Isolated from the Root of Suaeda japonica Makino
Sunho Park, Inhyup Kim, Geeta Chhetri, Yonghee Jung, Haejin Woo, Taegun Seo
Life.2024; 14(3): 296. CrossRef - Unveiling three novel actinobacterial species (Streptomyces cavernicola sp. nov., Streptomyces solicavernae sp. nov. and Streptomyces luteolus sp. nov.) in soil samples in Phu Pha Phet Cave, Thailand
Nitcha Chamroensaksri, Supattra Muangham, Chanwit Suriyachadkun, Worawich Phornsiricharoenphant, Wongsakorn Phongsopitanun, Satinee Suetrong, Somboon Tanasupawat
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Cellulomonas alba sp. nov. and Cellulomonas edaphi sp. nov., isolated from wetland soils
Sunho Park, Inhyup Kim, Geeta Chhetri, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Microbacterium algihabitans sp. nov., Microbacterium phycohabitans sp. nov., and Microbacterium galbum sp. nov., isolated from dried beach seaweeds
Soon Dong Lee, Hong Lim Yang, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Bifidobacterium apicola sp. nov., isolated from the gut of honeybee (Apis mellifera)
Ting-Yu Wang, Hao Wang, Chun Tao Gu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Polaribacter ponticola sp. nov., isolated from seawater, reclassification of Polaribacter undariae as a later heterotypic synonym of Polaribacter sejongensis, and emended description of Polaribacter sejongensis Kim et al. 2013
Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Description of Mycolicibacterium arenosum sp. nov. Isolated from Coastal Sand on the Yellow Sea Coast
Jiseon Jeong, Soyeon Ahn, Thoi Cong Truong, Jong-Hwa Kim, Veeraya Weerawongwiwat, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
Current Microbiology.2024;[Epub] CrossRef - Genome analysis deciphered Chryseobacterium indicum is a distinct species associated with freshwater pufferfish
Manish Prakash Victor, Ritu Rani Archana Kujur, Lipika Das, Subrata K. Das
Infection, Genetics and Evolution.2024; 118: 105561. CrossRef - Stable-isotope probing combined with amplicon sequencing and metagenomics identifies key bacterial benzene degraders under microaerobic conditions
András Táncsics, Anna Bedics, Sinchan Banerjee, André Soares, Erzsébet Baka, Alexander J. Probst, Balázs Kriszt
Biologia Futura.2024; 75(3): 301. CrossRef - Streptococcus taonis sp. nov., a novel bacterial species isolated from a blood culture of a patient
Chien-Yu Lee, Chin-Kan Chan, Momoko Chida, Mika Miyashita, Yun-Shien Lee, Hui-Chung Wu, Yu-Chung Chang, Wen-Ting Lin, Yi-Sheng Chen
Archives of Microbiology.2024;[Epub] CrossRef -
Shewanella phaeophyticola sp. nov. and Vibrio algarum sp. nov., isolated from marine brown algae
Mahrukh Butt, Jaejoon Jung, Jeong Min Kim, Hülya Bayburt, Dong Min Han, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Two Novel Bacterial Species, Rhodanobacter lycopersici sp. nov. and Rhodanobacter geophilus sp. nov., Isolated from the Rhizosphere of Solanum lycopersicum with Plant Growth-Promoting Traits
Haejin Woo, Inhyup Kim, Geeta Chhetri, Sunho Park, Hyunji Lee, Subin Yook, Taegun Seo
Microorganisms.2024; 12(11): 2227. CrossRef - Roseateles caseinilyticus sp. nov. and Roseateles cellulosilyticus sp. nov., isolated from rice paddy field soil
Yoonseop So, Geeta Chhetri, Inhyup Kim, Sunho Park, Yonghee Jung, Taegun Seo
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - A Multilocus Sequence Typing Scheme for Rapid Identification of Xanthomonas citri Based on Whole-Genome Sequencing Data
Efenaide B. Okoh, Michael Payne, Ruiting Lan, Markus Riegler, Toni A. Chapman, Daniel R. Bogema
Phytopathology®.2024; 114(7): 1480. CrossRef - Taxonomic characterization of Sphaerotilus microaerophilus sp. nov., a sheath-forming microaerophilic bacterium of activated sludge origin
Shiori Narihara, Shun Chida, Naoki Matsunaga, Ryosuke Akimoto, Mizuki Akimoto, Aoi Hagio, Tomomi Mori, Tadashi Nittami, Michio Sato, Sehui Mun, Hyeonjin Kang, Ji Hwan Back, Minoru Takeda
Archives of Microbiology.2024;[Epub] CrossRef - Dietary quality and the gut microbiome in early-stage Parkinson’s disease patients
Hyun Jeong Yoon, Woorim Kang, Sungyang Jo, Yun Su Hwang, Je Hee Lee, Sun Ju Chung, Yoo Kyoung Park
Nutritional Neuroscience.2024; 27(7): 761. CrossRef - Shewanella youngdeokensis sp. nov. Isolated from Marine Sediment and Sea Water of East Sea in Republic of Korea
Y.-S. Lee, H.-R. Jeong, E.-J. Hwang, M. P. Patil, S. S. Choi, Y. B. Seo, G.-D. Kim
Microbiology.2024; 93(6): 737. CrossRef -
Methylomonas rivi sp. nov., Methylomonas rosea sp. nov., Methylomonas aurea sp. nov. and Methylomonas subterranea sp. nov., type I methane-oxidizing bacteria isolated from a freshwater creek and the deep terrestrial subsurface
Christopher A. Abin, Christopher T. Garner, Krithivasan Sankaranarayanan, Reid A. Sindelar, Kyrah F. Kotary, Rosa M. Garner, Samantha C. Barclay, Haiyuan Cai, Paul A. Lawson, Lee R. Krumholz
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Lysobacter stagni sp. nov. and Limnohabitans lacus sp. nov., isolated from a pond
Yonghee Jung, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - EzBioCloud: a genome-driven database and platform for microbiome identification and discovery
Mauricio Chalita, Yeong Ouk Kim, Sein Park, Hyun-Seok Oh, Jae Hyoung Cho, Jeongsup Moon, Nuga Baek, Changsik Moon, Kihyun Lee, Junwon Yang, Gi Gyun Nam, Yeonjae Jung, Seong-In Na, Michael James Bailey, Jongsik Chun
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Description and genomic characterization of Cohnella caldifontis sp. nov., isolated from hot springs in Yunnan province, south-west China
Ming-Xian Xiang, Cui-Ping Miao, Dian-Yan Zhang, Juan Wang, Yi-Qing Li, Min Yin, ShuKun Tang
Antonie van Leeuwenhoek.2024;[Epub] CrossRef -
Chitiniphilus purpureus sp. nov., a novel chitin-degrading bacterium isolated from crawfish pond sediment
Kaiyang Li, Xiong Luo, Rongrong Fan, Zhuoran Ding, Shixue Zheng, Zhengjun Chen
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Phylogenomic analysis of metagenome-assembled genomes indicates new taxa in the order Spirochaetales and proposal of Thalassospirochaeta sargassi gen. nov. sp. nov. from seaweeds
Kohli Pragya, Pannikurungottu Sreya, Lakshmanan Vighnesh, Dhurka Mahima, Mallick Sushmita, Chintalapati Sasikala, Chintalapati Venkata Ramana
Systematic and Applied Microbiology.2024; 47(2-3): 126502. CrossRef - Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Raúl Riesco, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Description of Fuscovulum ytuae sp. nov, a facultative autotroph isolated from the intertidalite of Yangma island, China
Bin-zhe Zhang, Xiu-dan Xu, Dan-dan Zhou, Xue-Peng Li, Xu-dong Jiao, Jian Zhang
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Phylogenomic analysis uncovers an unexpected capacity for the biosynthesis of secondary metabolites in Pseudoalteromonas
Jingxuan Wang, Peng Li, Xue Di, Hongmei Lu, Huamao Wei, Shuai Zhi, David P. Fewer, Shan He, Liwei Liu
European Journal of Medicinal Chemistry.2024; 279: 116840. CrossRef -
Roseateles subflavus sp. nov. and Roseateles aquae sp. nov., isolated from artificial pond water and Roseateles violae sp. nov., isolated from a Viola mandshurica root
Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Comamonas endophytica sp. nov., a novel indole acetic acid producing endophyte isolated from bamboo in China
Jinjun Yue, Fu Yang, Youtie Xiao, Seqiao Lin, Zhengping He, Siyu Wang, Jiayi Zhao, Jinling Yuan, Lubin Li, Lei Liu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genome-Based Classification of Pedobacter albus sp. nov. and Pedobacter flavus sp. nov. Isolated from Soil
Nhan Le Thi Tuyet, Jaisoo Kim
Diversity.2024; 16(5): 292. CrossRef -
Sphingobacterium oryzagri sp. nov., isolated from rice paddy soil
Seunghwan Kim, Jun Heo, Hyorim Choi, Daseul Lee, Soon-Wo Kwon, Yiseul Kim
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Paracoccus benzoatiresistens sp. nov., a benzoate resistance and selenite reduction bacterium isolated from wetland
Weidong Mu, Haoran Liu, Bai Guo, Kaiyue Wang, Jinhua Hu, Jianjun Song, Xiuyun Li, Shuzhen Wei, Aijv Liu, Hongliang Liu
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Oceanimonas pelagia sp. nov., a novel biosurfactant-producing and plastic-degrading potential bacterium isolated from marine coastal sediment
Hsiao-Tsu Yang, Yi-Hsuan Huang, Ying-Ning Ho
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Aquificae overcomes competition by archaeal thermophiles, and crowding by bacterial mesophiles, to dominate the boiling vent-water of a Trans-Himalayan sulfur-borax spring
Nibendu Mondal, Subhajit Dutta, Sumit Chatterjee, Jagannath Sarkar, Mahamadul Mondal, Chayan Roy, Ranadhir Chakraborty, Wriddhiman Ghosh, Marcos Pileggi
PLOS ONE.2024; 19(10): e0310595. CrossRef - Simplicispira sedimenti sp. nov., isolated from a sediment of drainage ditch in winery
Xing Chen, Yuan-Dong Li, Xiu-Ming Liu, Li Gao, Xing-Kui Zhou, Li-Min Dong, Gang Du, Neeli Habib, Wen-Jun Li, Yan-Qing Duan
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Lacticaseibacillus jixiensis sp. nov., Isolated from Traditional Chinese Pickle
Si-Tong Song, Chun Yan Li, Chun Tao Gu
Current Microbiology.2024;[Epub] CrossRef - Crenobacter oryzisoli sp. nov., a novel phosphate-solubilizing bacterium isolated from the paddy soil
Shu-Qun Zhang, Cheng-Jie Xie, Ling Yao, Christopher Rensing, Hao Lin, Guo-Hong Liu, Shun-Gui Zhou
Archives of Microbiology.2024;[Epub] CrossRef -
Flavobacterium capsici sp. nov., isolated from the rhizospheric soils of bell pepper (Capsicum annuum L.)
Dong Hyun Cho, Yuxin Peng, Zalfa Humaira, Yu Lim Park, Hyun Jung Kim, Rae-Dong Jeong, Cha Young Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Blastococcus montanus sp. nov., a multi-stress-resistant and bacteriostatic-producing bacterium isolated from the Flaming Mountain, Xinjiang,China
Kexin Wang, Yang Liu, Xiaowen Cui, Tuo Chen, Guangxiu Liu, Wei Zhang, Zhiyong Han, Gaosen Zhang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Phylogenomic evaluation of Mangrovimicrobium sediminis gen. nov. sp. nov., the first nitrogen fixing member of the family Halieaceae adapted to mangrove habitat and reclassification of Halioglobus pacificus to Pseudohaliglobus pacificus comb. nov.
Pravin Kumar, Ashish Verma, Pooja Yadav, Joyasree Das, Lalit Kumar, Srinivasan Krishnamurthi
Science of The Total Environment.2024; 933: 172995. CrossRef -
Arcobacteraceae
are ubiquitous mixotrophic bacteria playing important roles in carbon, nitrogen, and sulfur cycling in global oceans
Jianyang Li, Shizheng Xiang, Yufei Li, Ruolin Cheng, Qiliang Lai, Liping Wang, Guizhen Li, Chunming Dong, Zongze Shao, Thomas J. Sharpton
mSystems.2024;[Epub] CrossRef - Niabella digestorum sp. nov., a High Cell-Surface Hydrophobic Bacterium Isolated from Waste Digestion System
Ling Zhang, Chuansheng Geng, Xingjuan Chen, Letian Chen, Tongchu Deng, Meiying Xu
Current Microbiology.2024;[Epub] CrossRef - Safety assessment, whole genome sequence, and metabolome analysis of Streptococcus thermophilus CICC 20372 for bone cement fermentation
Rongshan Li, Yangfan Hu, Yang Xu, Jinlong Zhou, Yunfang Li, Qing Liu, Bo Yu
Archives of Microbiology.2024;[Epub] CrossRef -
Methylocystis suflitae sp. nov., a novel type II methanotrophic bacterium isolated from landfill cover soil
Christopher T. Garner, Krithivasan Sankaranarayanan, Christopher A. Abin, Rosa M. Garner, Haiyuan Cai, Paul A. Lawson, Lee R. Krumholz
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Polysaccharide degradation in Cellvibrionaceae: Genomic insights of the novel chitin-degrading marine bacterium, strain KSP-S5-2, and its chitinolytic activity
Nyok-Sean Lau, Go Furusawa
Science of The Total Environment.2024; 912: 169134. CrossRef - Nitrogen source influences the interactions of comammox bacteria with aerobic nitrifiers
Katherine Jeanne Vilardi, Juliet Johnston, Zihan Dai, Irmarie Cotto, Erin Tuttle, Ariana Patterson, Aron Stubbins, Kelsey J. Pieper, Ameet J. Pinto, Erik F. Y. Hom
Microbiology Spectrum.2024;[Epub] CrossRef -
Falsiroseomonas oryziterrae sp. nov., and Falsiroseomonas oryzae sp. nov., isolated from rice paddy soil
Hyo-Jin Lee, Kyung-Sook Whang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Pseudoalteromonas simplex sp. nov. Isolated from the Skin of Bandtail Puffer Fish (Sphoeroides spengleri)
Hannah K. Mattsson, Mayanne A. M. de Freitas, Gustavo P. R. de Azevedo, Vinicius Salazar, Verônica V. Vieira, Diogo A. Tschoeke, Cristiane C. Thompson, Fabiano L. Thompson
Current Microbiology.2024;[Epub] CrossRef - Genomic evidence that Ornithinicoccus soli Jiang et al. 2020 is a later heterotypic synonym of Segeticoccus rhizosphaerae Lee and Whang 2020
Qing Liu, Yu-Hua Xin
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Roseobacter fucihabitans sp. nov., isolated from the brown alga Fucus spiralis
Sarah Hahnke, Martine Berger, Andrea Schlingloff, Isha Athale, Jacqueline Wolf, Meina Neumann-Schaal, Adenike Adenaya, Anja Poehlein, Rolf Daniel, Jörn Petersen, Thorsten Brinkhoff
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Complete genome sequence of a novel Prescottella sp. R16 isolate from deep-sea sediments in the western Pacific
Lingqi Ma, Yuqi Bai, Weili Wang, Shengxiang Pei, Gaiyun Zhang
Frontiers in Genetics.2024;[Epub] CrossRef - Randomized Clinical Trials Demonstrate the Safety Assessment of Alkalihalobacillus clausii AO1125 for Use as a Probiotic in Humans
Gissel García, Josanne Soto, Antonio Díaz, Jesús Barreto, Carmen Soto, Ana Beatriz Pérez, Suselys Boffill, Raúl De Jesús Cano
Microorganisms.2024; 12(11): 2299. CrossRef - Ureibacillus aquaedulcis sp. nov., isolated from freshwater well and reclassification of Lysinibacillus yapensis and Lysinibacillus antri as Ureibacillus yapensis comb. nov. and Ureibacillus antri comb. nov.
Amit Yadav, Ruchi Teware, Agrima Bhatt, Yash Bhavsar, Akanksha Maurya, Vipool Thorat, Venkata Ramana Vemuluri, Kiran Kirdat
Archives of Microbiology.2024;[Epub] CrossRef - Diverse and specialized metabolic capabilities of microbes in oligotrophic built environments
Xinzhao Tong, Danli Luo, Marcus H. Y. Leung, Justin Y. Y. Lee, Zhiyong Shen, Wengyao Jiang, Christopher E. Mason, Patrick K. H. Lee
Microbiome.2024;[Epub] CrossRef - Sabulicella glaciei sp. nov., Isolated from Glacier, and Reclassification of Roseomonas rubea, Roseomonas ponticola and Roseomonas oleicola as Neoroseomonas rubea comb. nov., Falsiroseomonas ponticola comb. nov. and Falsiroseomonas oleicola comb. nov
Qing Liu, Yu-Hua Xin
Current Microbiology.2024;[Epub] CrossRef - A functionally augmented carbohydrate utilization locus from herbivore gut microbiota fueled by dietary β-glucans
Fernanda Mandelli, Marcele Pandeló Martins, Mariana Chinaglia, Evandro Antonio de Lima, Mariana Abrahão Bueno Morais, Tatiani Brenelli Lima, Lucélia Cabral, Renan Augusto Siqueira Pirolla, Felipe Jun Fuzita, Douglas Antônio Alvaredo Paixão, Maxuel de Oliv
npj Biofilms and Microbiomes.2024;[Epub] CrossRef - Active coexistence of the novel gammaproteobacterial methanotroph ‘Ca.Methylocalor cossyra’ CH1 and verrucomicrobial methanotrophs in acidic, hot geothermal soil
Changqing Liu, Rob A. Schmitz, Arjan Pol, Carmen Hogendoorn, Daniël Verhagen, Stijn H. Peeters, Theo A. van Alen, Geert Cremers, Rob A. Mesman, Huub J. M. Op den Camp
Environmental Microbiology.2024;[Epub] CrossRef - Fodinisporobacter ferrooxydans gen. nov., sp. nov.—A Spore-Forming Ferrous-Oxidizing Bacterium Isolated from a Polymetallic Mine
Zhen Jiang, Xiutong Li, Zonglin Liang, Zebao Tan, Nan Zhou, Ying Liu, Zhenghua Liu, Huaqun Yin, Kun Luo, Supawadee Ingsriswang, Shuangjiang Liu, Chengying Jiang
Microorganisms.2024; 12(5): 853. CrossRef -
Massilia agrisoli sp. nov., isolated from rhizospheric soil of banana
Md. Amdadul Huq, Juncai Ma, Sathiyaraj Srinivasan, Md. Anowar Khasru Parvez, M. Mizanur Rahman, Masoumeh Naserkheil, Md. Abuhena, Pulak Maitra, Fahadul Islam, Kihong NAM, Jong-Hyun Park, Shahina Akter
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Tamlana laminarinivorans sp. nov. and Tamlana sargassicola sp. nov., two novel species isolated from Sargassum, show genomic and physiological adaptations for a Sargassum-associated lifestyle
Jin Li, Yumei Liang, Zhixiao He, Lu An, Yongjin Liu, Mingqi Zhong, Zhong Hu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Ecophysiological and Genomic Characterization of the Freshwater Complete Ammonia OxidizerNitrospirasp. Strain BO4
Sabita Ghimire-Kafle, Matt E. Weaver, Annette Bollmann, Jennifer B. Glass
Applied and Environmental Microbiology.2023;[Epub] CrossRef - Bacteroides faecium sp. nov. isolated from human faeces
Juseok Kim, Hye Seon Song, Joon Yong Kim, Tae Woong Whon, Won-Hyong Chung, Young-Do Nam, Yoon-E Choi, Seong Woon Roh
International Journal of Systematic and Evolutionary Microbiology.2023;[Epub] CrossRef - A minireview on the bioinformatics analysis of mobile gene elements in microbiome research
Jana Schwarzerova, Anastasiya Labanava, Ivan Rychlik, Margaret Varga, Darina Cejkova
Frontiers in Bacteriology.2023;[Epub] CrossRef -
Curtanaerobium respiraculi gen. nov., sp. nov., a novel anaerobic bacterium isolated from human bronchoalveolar lavage fluid
Yifan Sun, Likun Wang, Dexing Han, Jianjie Li, Yuejiao Liu, Yafang Tan, Zhiyuan Pan, Ruifu Yang, Pinghua Qu, Ziping Wang, Yujing Bi
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Faecalibacterium hominis Liu et al. 2023 is a later heterotypic synonym of Faecalibacterium duncaniae Sakamoto et al. 2022
Mitsuo Sakamoto, Naomi Sakurai, Hiroki Tanno, Takao Iino, Moriya Ohkuma, Akihito Endo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia
Dimitry Y Sorokin, Tamara V Tikhonova, Hanna Koch, Eveline M van den Berg, Renske S Hinderks, Martin Pabst, Natalia I Dergousova, Anastasia Y Soloveva, Gijs J Kuenen, Vladimir O Popov, Mark C M van Loosdrecht, Sebastian Lücker
The ISME Journal.2023; 17(10): 1639. CrossRef - Limobrevibacterium gyesilva gen. nov., sp. nov., Isolated from Forest Soil
Nhan Le Thi Tuyet, Jaisoo Kim
Diversity.2023; 15(5): 684. CrossRef -
Microbacterium tenebrionis sp. nov. and Microbacterium allomyrinae sp. nov., isolated from larvae of Tenebrio molitor L. and Allomyrina dichotoma, respectively
Soon Dong Lee, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Roseateles albus sp. nov., Roseateles koreensis sp. nov. and Janthinobacterium fluminis sp. nov., isolated from freshwater at Jucheon River, and emended description of Roseateles aquaticus comb. nov.
Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Species-specificity of the secondary biosynthetic potential in Bacillus
Qun-Jian Yin, Ti-Ti Ying, Zhen-Yi Zhou, Gang-Ao Hu, Cai-Ling Yang, Yi Hua, Hong Wang, Bin Wei
Frontiers in Microbiology.2023;[Epub] CrossRef - Taxonomic Study of Three Novel Paenibacillus Species with Cold-Adapted Plant Growth-Promoting Capacities Isolated from Root of Larix gmelinii
Han Xue, Yan Tu, Tengfei Ma, Ning Jiang, Chungen Piao, Yong Li
Microorganisms.2023; 11(1): 130. CrossRef - Characterization and Antioxidant Activity of Exopolysaccharides Produced by Lysobacter soyae sp. nov Isolated from the Root of Glycine max L.
Inhyup Kim, Geeta Chhetri, Yoonseop So, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo
Microorganisms.2023; 11(8): 1900. CrossRef - Cyclitol metabolism is a central feature of Burkholderia leaf symbionts
Bram Danneels, Monique Blignaut, Guillaume Marti, Simon Sieber, Peter Vandamme, Marion Meyer, Aurélien Carlier
Environmental Microbiology.2023; 25(2): 454. CrossRef - Sphingomonas abietis sp. nov., an Endophytic Bacterium Isolated from Korean Fir
Lingmin Jiang, Hanna Choe, Yuxin Peng, Doeun Jeon, Donghyun Cho, Yue Jiang, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
Journal of Microbiology and Biotechnology.2023; 33(10): 1292. CrossRef - Description of Brachybacterium sillae sp. nov., a thermophilic bacterium isolated from a hot spring
Dariimaa Ganbat, DoKyung Oh, Yong-Jik Lee, Dong-Woo Lee, Seong-Bo Kim, Won-Jae Chi, Ki-Eun Lee, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
Antonie van Leeuwenhoek.2023; 116(8): 791. CrossRef - Bacillus velezensis RC116 Inhibits the Pathogens of Bacterial Wilt and Fusarium Wilt in Tomato with Multiple Biocontrol Traits
Honghong Dong, Ruixiang Gao, Yijie Dong, Qing Yao, Honghui Zhu
International Journal of Molecular Sciences.2023; 24(10): 8527. CrossRef - Cultivation of marine bacteria of the SAR202 clade
Yeonjung Lim, Ji-Hui Seo, Stephen J. Giovannoni, Ilnam Kang, Jang-Cheon Cho
Nature Communications.2023;[Epub] CrossRef - Complex evolutionary history of photosynthesis in Bradyrhizobium
Juanita R. Avontuur, P. Markus Wilken, Marike Palmer, Martin P. A. Coetzee, Tomasz Stępkowski, Stephanus N. Venter, Emma T. Steenkamp
Microbial Genomics
.2023;[Epub] CrossRef -
Brevibacillus ruminantium sp. nov., isolated from cow faeces
Seunghwan Kim, Jun Heo, Soon-Wo Kwon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Yiseul Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Rhizobium acaciae sp. nov., a new nitrogen-fixing symbiovar isolated from root nodules of Acacia saligna in Tunisia
Jihed Hsouna, Houda Ilahi, Jia-Cheng Han, Takwa Gritli, Walid Ellouze, Xiao Xia Zhang, Maroua Mansouri, Praveen Rahi, Mustapha Missbah El Idrissi, Mouad Lamrabet, M'hamed Oubla, Pierre Emmanuel Courty, Daniel Wipf, James T. Tambong, Bacem Mnasri
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Asticcacaulis aquaticus sp. nov., Asticcacaulis currens sp. nov. and Asticcacaulis machinosus sp. nov., isolated from streams in PR China
Huibin Lu, Li Chen, Lingyang Kong, Linpei Huang, Guangjie Chen
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Maritalea mediterranea sp. nov., isolated from marine plastic residues
Àngela Vidal-Verdú, Esther Molina-Menor, Leila Satari, Javier Pascual, Juli Peretó, Manuel Porcar
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Acidaminococcus homini s sp. nov., Amedibacillus hominis sp. nov., Lientehia hominis gen. nov. sp. nov., Merdimmobilis hominis gen. nov. sp. nov., and Paraeggerthella hominis sp. nov., isolated from human faeces
Rashidin Abdugheni, Dan-Hua Li, Yu-Jing Wang, Meng-Xuan Du, Nan Zhou, Chang Liu, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology.2023;[Epub] CrossRef -
Streptomyces albidoflavus
Q antifungal metabolites inhibit the ergosterol biosynthesis pathway and yeast growth in fluconazole-resistant
Candida glabrata
: phylogenomic and metabolomic analyses
Celia Bautista-Crescencio, Arturo Casimiro-Ramos, M. Jonathan Fragoso-Vázquez, José Correa-Basurto, Carlos Olano, César Hernández-Rodríguez, Lourdes Villa-Tanaca, Edward Sionov
Microbiology Spectrum.2023;[Epub] CrossRef -
Neopusillimonas aromaticivorans sp. nov. isolated from poultry manure
Shih-Yao Lin, Tzu-Yu Lin, Asif Hameed, Yu-Shan Tang, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Microbacterium nymphoidis sp. nov. and Microbacterium festucae sp. nov., two novel species with high plant-promoting potential isolated from wetland plants in China
Chunyi Li, Xiaoqian Jin, Fu Yang, Jiayi Zhao, Siyu Wang, Qiwu Sun, Lubin Li, Lei Liu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Salipiger pentaromativorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from mangrove sediment
Jiangwei Li, Qiliang Lai, Anyi Hu, Huijie Liu, Dan Qin, Xiaoyong Yang, Yun Tian, Chang-Ping Yu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Dermatobacter hominis gen. nov., sp. nov., a new member of the family Iamiaceae, revealed the potential utilisation of skin-derived metabolites
HyungWoo Jo, Chaeyun Baek, Young Mok Heo, Hye-Been Kim, Haeun Lee, Seunghyun Kang, Seyoung Mun, Yunseok Oh, Doyeong Ko, Kyudong Han, Raúl Riesco, Martha E. Trujillo, Dong-Geol Lee
Antonie van Leeuwenhoek.2023; 116(11): 1139. CrossRef - Cerina litoralis gen. nov., sp. nov., a novel potential polysaccharide degrading bacterium of the family Flavobacteriaceae, isolated from marine sediment
Ya-Wei Wang, Xin-Hui Wang, Jing Zhang, Zong-Jun Du, Da-Shuai Mu
Antonie van Leeuwenhoek.2023; 116(12): 1447. CrossRef - Sphingomonas liriopis sp. nov., Sphingomonas donggukensis sp. nov., and Sphingomonas tagetis sp. nov., isolated from Liriope platyphylla fruit, soil, and Tagetes patula roots
Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Sunho Park, Taegun Seo
Archives of Microbiology.2023;[Epub] CrossRef - Characterization of phytopathogen-preying Hyalangium versicolor sp. nov., and proposal for the reclassification of Cystobacter gracilis as Hyalangium gracile comb. Nov
Xianjiao Zhang, Guangda Feng, Yang Liu, Jiali Li, Xiaoqin Deng, Qing Yao, Honghui Zhu
Archives of Microbiology.2023;[Epub] CrossRef - Thiorhodovibrio frisius and Trv. litoralis spp. nov., Two Novel Members from a Clade of Fastidious Purple Sulfur Bacteria That Exhibit Unique Red-Shifted Light-Harvesting Capabilities
Anika Methner, Steven Kuzyk, Jörn Petersen, Sabine Bauer, Henner Brinkmann, Katja Sichau, Gerhard Wanner, Jacqueline Wolf, Meina Neumann-Schaal, Petra Henke, Marcus Tank, Cathrin Spröer, Boyke Bunk, Jörg Overmann
Microorganisms.2023; 11(10): 2394. CrossRef - Genomic attributes and characterization of novel exopolysaccharide-producing bacterium Halomonas piscis sp. nov. isolated from jeotgal
Bora Kim, Ah-In Yang, Hae-In Joe, Ki Hyun Kim, Hanna Choe, Sung-Hong Joe, Min Ok Jun, Na-Ri Shin
Frontiers in Microbiology.2023;[Epub] CrossRef - Corynebacterium lipophilum sp. nov., a lipophilic bacterium isolated from clinical breast specimens and emended description of the species Corynebacterium pilbarense
Qiang Luo, Haimin Luo, Tianqi Zhang, Xiaofang Liu, Xiaowei Chen, Qianming Chen, Junhui Feng, Pinghua Qu, Cha Chen, Ning Xu
Antonie van Leeuwenhoek.2023; 116(10): 1091. CrossRef -
Arcobacter roscoffensis sp. nov., a marine bacterium isolated from coastal seawater
Javier Pascual, Cendrella Lepleux, Anika Methner, Cathrin Spröer, Boyke Bunk, Jörg Overmann
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Ferranicluibacter rubi gen. nov., sp. nov., a new member of family Rhizobiaceae isolated from stems of elmleaf blackberry (Rubus ulmifolius Schott) in Northwest Spain
Rocio Roca-Couso, Jose David Flores-Felix, Jose M. Igual, Paula García-Fraile, Encarna Velázquez, Raúl Rivas
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Sulfurovum mangrovi sp. nov., an obligately chemolithoautotrophic, hydrogen-oxidizing bacterium isolated from coastal marine sediments
Yufei Li, Shasha Wang, Bowen Ji, Qing Yuan, Shiping Wei, Qiliang Lai, Kaiyue Wu, Lijing Jiang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Hominibacterium faecale gen. nov., sp. nov., an anaerobic l-arginine-degrading bacterium isolated from human feces
Noori Borhanudin, Min Yang, Andrei V. Chaplin, Jiang Li, Qiong Wang, Li-rong Dai, Ke-jia Wu, Shi-chun Ma, Boris A. Efimov, Lei Cheng
Archives of Microbiology.2023;[Epub] CrossRef -
Curtobacterium caseinilyticum sp. nov., Curtobacterium subtropicum sp. nov. and Curtobacterium citri sp. nov., isolated from citrus phyllosphere
Guang-Da Feng, Jiali Li, Songzhen Yang, Jun Zhang, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Vibrio intestinalis sp. nov., isolated from intestine of seahorse
Libo Yu, Shiping Wei, Zhidong Zhou, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Chitinophaga nivalis sp. nov., isolated from forest soil in Pyeongchang, Republic of Korea
Ngoc Hoang Trinh, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Reclassification of Clostridium cocleatum, Clostridium ramosum, Clostridium spiroforme and Clostridium saccharogumia as Thomasclavelia cocleata gen. nov., comb. nov., Thomasclavelia ramosa comb. nov., gen. nov., Thomasclavelia spiroformis comb. nov. and T
Paul A. Lawson, Liz Saavedra Perez, Krithivasan Sankaranarayanan
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Paracoccus albicereus sp. nov., isolated from the shallow-sea hydrothermal system off Kueishantao Island
Yajie He, Dan Lin, Beihan Chen, Xinzhu Liu, Jianing Ye, Jia Sun, Kai Tang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Flectobacillus longus sp. nov. and Flectobacillus rivi sp. nov., isolated from streams in China and reclassification of Flectobacillus rhizosphaerae as a synonym of Flectobacillus roseus
Huibin Lu, Ping Li, Li Chen, Guangjie Chen
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Aequorivita vitellina sp. nov. and Aequorivita xiaoshiensis sp. nov., isolated from marine sediment
Ya-Wei Wang, Jing Zhang, Shu-Xin Wang, Zong-Jun Du, Da-Shuai Mu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Two novel symbiovars of Bradyrhizobium yuanmingense, americaense and caribense, the symbiovar tropici of Bradyrhizobium pachyrhizi and the symbiovar cajani of Bradyrhizobium cajani are microsymbionts of the legume Cajanus cajan in Dominican Republic
José David Flores-Félix, Fernando Sánchez-Juanes, Juan Araujo, César Antonio Díaz-Alcántara, Encarna Velázquez, Fernando González-Andrés
Systematic and Applied Microbiology.2023; 46(5): 126454. CrossRef -
Frateuria soli sp. nov. and Frateuria edaphi sp. nov., isolated from greenhouse soil
Miyoung Won, Jun Heo, Hang-Yeon Weon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Four new Microbacterium species isolated from seaweeds and reclassification of five Microbacterium species with a proposal of Paramicrobacterium gen. nov. under a genome-based framework of the genus Microbacterium
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Frontiers in Microbiology.2023;[Epub] CrossRef -
Actinomadura terrae sp. nov. and Actinomadura litoris OS3-89, isolated from rhizosphere soil of cactus
Soon Dong Lee, Hong Lim Yang, In Seop Kim, Hanna Choe, Ji-Sun Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Bioplastic (poly-3-hydroxybutyrate)-producing Massilia endophytica sp. nov., isolated from Cannabis sativa L. ‘Cheungsam’
Doeun Jeon, Lingmin Jiang, Ki-Hyun Kim, Yuxin Peng, Donghyun Cho, Rae-Dong Jeong, Cha Young Kim, Jae Cheol Jeong, Jiyoung Lee
Scientific Reports.2023;[Epub] CrossRef -
Similar but different: Characterization of
dddD
gene–mediated DMSP metabolism among coral-associated
Endozoicomonas
Yu-Jing Chiou, Ya-Fan Chan, Sheng-Ping Yu, Chih-Ying Lu, Silver Sung-Yun Hsiao, Pei-Wen Chiang, Ting-Chang Hsu, Po-Yu Liu, Naohisa Wada, Yu Lee, Wann-Neng Jane, Der-Chuen Lee, Yu-Wen Huang, Sen-Lin Tang
Science Advances.2023;[Epub] CrossRef -
Halomonas dongshanensis sp. nov., isolated from the seawater of Dongshan Island
Wen-zhen Lin, Lin-feng Gong, Ying Guo, Ru-zhen Liu, Wei Xu, Qi-yang Guan, Chi-ming Guo, Zhi-kai Lin, Hong-yan Meng, Xiao-yao Chen
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Reclassification of Sabulilitoribacter multivorans and Sabulilitoribacter arenilitoris as Flaviramulus multivorans comb. nov. and Wocania arenilitoris comb. nov., respectively, based on genome sequence analysis
Ang Liu, Xinyue Dong, Wanting Wang, Jiayi Qin, Hongyu Leng, Chenlong Yan, Longyu Zhao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Tahibacter harae sp. nov., isolated from pig farm soil in Guangdong, PR China
Haixin Chen, Yang Zhou, Qing Yao, Hongxia Jiang, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Paenibacillus soyae sp. nov., isolated from the rhizosphere of soya bean
Hui Zhao, Yue Su, Qihui Gu, Jumei Zhang, Xinqiang Xie, Qingping Wu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Maribacter aquimaris sp. nov., isolated from seawater adjacent to Fildes Peninsula, Antarctica
Yanfeng Zhang, Yanwu Zhai, Lulu Mu, Miaomiao Hu, Wei Fang, Yazhong Xiao, Zemin Fang
Antonie van Leeuwenhoek.2023; 116(8): 753. CrossRef - Three novel marine species of the genus Reichenbachiella exhibiting degradation of complex polysaccharides
Neak Muhammad, Forbes Avila, Olga I. Nedashkovskaya, Song-Gun Kim
Frontiers in Microbiology.2023;[Epub] CrossRef - Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
Scientific Reports.2023;[Epub] CrossRef - Identification and genomic analysis of Pseudosulfitobacter koreense sp. nov. isolated from toxin-producing dinoflagellate Alexandrium pacificum
Yue Jiang, Zhun Li
Archives of Microbiology.2023;[Epub] CrossRef -
Agromyces larvae sp. nov., a novel actinobacterium isolated from gut of larvae of Protaetia brevitarsis seulensis
Miyoung Won, Parthiban Subramanian, Seunghwan Kim, Jun Heo, Hanako Naito, Tomomi Asano, Moriyuki Hamada, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Antioxidant prodigiosin-producing cold-adapted Janthinobacterium sp. ERMR3:09 from a glacier moraine: Genomic elucidation of cold adaptation and pigment biosynthesis
Srijana Mukhia, Anil Kumar, Rakshak Kumar
Gene.2023; 857: 147178. CrossRef -
Oryzibacter oryziterrae gen. nov., sp. nov., isolated from rice paddy soil
Hyo-Jin Lee, Kyung-Sook Whang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Trinickia mobilis sp. nov. and Trinickia acidisoli sp. nov., isolated from soil
You-qi Wang, Bing-nan Zhao, Xiu-yin Guo, Ke-cheng Wu, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Metabolic Versatility of the FamilyHalieaceaeRevealed by the Genomics of Novel Cultured Isolates
Shan-Hui Li, Ilnam Kang, Jang-Cheon Cho, Eva C. Sonnenschein
Microbiology Spectrum.2023;[Epub] CrossRef - Description of Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp. nov., and Luteibacter aegosomatissinici sp. nov. isolated from the Intestines of Aegosoma sinicum Larvae
Hae-In Joe, Jee-Won Choi, June-Young Lee, Hojun Sung, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, Jin-Woo Bae
Journal of Microbiology.2023; 61(6): 603. CrossRef -
Alkalimarinus alittae sp. nov., isolated from gut of marine sandworm (Alitta virens) and emended description of the genus Alkalimarinus
Ah-In Yang, Hae-In Joe, Hanna Choe, Han Sol Kim, Mi Kyung Eom, Zhun Li, Min Ok Jun, Bora Kim, Jung-Sook Lee, Na-Ri Shin
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Pan-Genome Analyses of the Genus Cohnella and Proposal of the Novel Species Cohnella silvisoli sp. nov., Isolated from Forest Soil
Chunling Wang, Lutian Mao, Gegen Bao, Honghui Zhu
Microorganisms.2023; 11(11): 2726. CrossRef - Five novel Hymenobacter species isolated from air: Hymenobacter cellulosilyticus sp. nov., Hymenobacter cellulosivorans sp. nov., Hymenobacter aerilatus sp. nov., Hymenobacter sublimis sp. nov. and Hymenobacter volaticus sp. nov.
Yiseul Kim, Parthiban Subramanian, Hyorim Choi, Hang-Yeon Weon, Seunghwan Kim, Soon-Wo Kwon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Jun Heo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Vogesella aquatica sp. nov. and Vogesella margarita sp. nov., isolated from rivers in Southwest China
Huibin Lu, Li Chen, Lingyang Kong, Linpei Huang, Guangjie Chen
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - tilS and rpoB: New Molecular Markers for Phylogenetic and Biodiversity Studies of the Genus Thiothrix
Nikolai V. Ravin, Dmitry D. Smolyakov, Nikita D. Markov, Alexey V. Beletsky, Andrey V. Mardanov, Tatyana S. Rudenko, Margarita Yu. Grabovich
Microorganisms.2023; 11(10): 2521. CrossRef - Poseidonibacter ostreae sp. nov., Isolated from the Gut of Ostrea from the Seomjin River
Kiwoon Baek, Sumin Jang, Eu Jin Chung, Shi Hyun Ryu, Ahyoung Choi
Diversity.2023; 15(8): 920. CrossRef -
Paenibacillus dendrobii sp. nov., an indole-3-acetic acid-producing endophytic bacterium isolated from Dendrobium nobile
Yadong Hu, Hongjie Li, Yaoyi Chen, Qiling Zhang, Shigang Zheng, Dan Rao, Ze Chun, Ruoxi Zhao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Gillisia lutea sp. nov., isolated from marine aluminium residues from the Mediterranean sea
Àngela Vidal-Verdú, Esther Molina-Menor, Javier Pascual, Juli Peretó, Manuel Porcar
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Flavobacterium potami sp. nov., a multi-metal resistance genes harbouring bacterium isolated from shallow river silt
Shucheng Li, Sidi Mao, Weidong Mu, Bai Guo, Chen Li, Qing Zhu, Xiaoxiao Hou, Yanfang Zhao, Shuzhen Wei, Hongliang Liu, Aiju Liu
Antonie van Leeuwenhoek.2023; 116(3): 265. CrossRef -
Ligilactobacillus cholophilus sp. nov., isolated from pickled potherb mustard (Brassica juncea Coss.)
Quanlu Ren, Danqi Wang, Jin Han, Jing Wang, Zhenmin Liu, Zhengjun Wu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - EasyCGTree: a pipeline for prokaryotic phylogenomic analysis based on core gene sets
Dao-Feng Zhang, Wei He, Zongze Shao, Iftikhar Ahmed, Yuqin Zhang, Wen-Jun Li, Zhe Zhao
BMC Bioinformatics.2023;[Epub] CrossRef - Genome-based analyses of the genus Acidovorax: proposal of the two novel genera Paracidovorax gen. nov., Paenacidovorax gen. nov. and the reclassification of Acidovorax antarcticus as Comamonas antarctica comb. nov. and emended description of the genus Ac
Juan Du, Yang Liu, Honghui Zhu
Archives of Microbiology.2023;[Epub] CrossRef - Genomic insights of an alkaliphilic bacterium Halalkalibacter alkaliphilus sp. nov. isolated from an Indian Soda Lake
Amaraja Joshi, Sonia Thite, Tushar Lodha, Neetha Joseph, Purva Mengade
Antonie van Leeuwenhoek.2023; 116(5): 435. CrossRef - Genome-Wide Pathway Exploration of the Epidermidibacterium keratini EPI-7T
Yunseok Oh, Seyoung Mun, Young-Bong Choi, HyungWoo Jo, Dong-Geol Lee, Kyudong Han
Microorganisms.2023; 11(4): 870. CrossRef -
Pseudomonas cucumis sp. nov., isolated from the rhizosphere of crop plants
Kaiji Liao, Jianying Liu, Yi-Lin Gu, Can Wang, Hai-Lei Wei
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Three marine species of the genus Fulvivirga, rich sources of carbohydrate-active enzymes degrading alginate, chitin, laminarin, starch, and xylan
Tra T. H. Nguyen, Tien Q. Vuong, Ho Le Han, Zhun Li, Yong-Jae Lee, Jaeho Ko, Olga I. Nedashkovskaya, Song-Gun Kim
Scientific Reports.2023;[Epub] CrossRef - Novosphingobium beihaiensis sp. nov., a novel pesticide-tolerant bacterium isolated from mangrove sediments
Wenjin Hu, Yiying Huang, Yingjing Liu, Xiaoying Zhou, Shushi Huang, Jiemei Chu, Xinli Pan
Antonie van Leeuwenhoek.2023; 116(11): 1151. CrossRef - Paracoccus onchidii sp. nov., a moderately halophilic bacterium isolated from a marine invertebrate from the South China Sea
Shan-shan Xu, Qi-liang Lai, Zeng-zhi Liu, Ying Xu
Antonie van Leeuwenhoek.2023; 116(8): 801. CrossRef -
Ideonella oryzae sp. nov., isolated from soil, and Spirosoma liriopis sp. nov., isolated from fruits of Liriope platyphylla
Yonghee Jung, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Mariniradius sediminis sp. nov., a multi-xenobiotics degrading genes harbouring bacterium isolated from sediment of river
Shucheng Li, Weidong Mu, Haoran Liu, Bai Guo, Sidi Mao, Changqing Su, Hui Li, Zhiqiang Zhang, Aijv Liu, Shuzhen Wei, Hongliang Liu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Xanthocytophaga agilis sp. nov. and Xanthocytophaga flavus sp. nov. of the new genus Xanthocytophaga gen. nov and the proposal of Rhodocytophagaceae fam. nov. within the order Cytophagales
Xianjiao Zhang, Guang-Da Feng, Yang Liu, Fan Yang, Yanxuan Li, Xiaoqin Deng, Honghui Zhu, Qing Yao
Archives of Microbiology.2023;[Epub] CrossRef - A nostoxanthin-producing bacterium, Sphingomonas nostoxanthinifaciens sp. nov., alleviates the salt stress of Arabidopsis seedlings by scavenging of reactive oxygen species
Lingmin Jiang, Jiyoon Seo, Yuxin Peng, Doeun Jeon, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2023;[Epub] CrossRef -
Halobacillus salinarum sp. nov., Halobacillus shinanisalinarum sp. nov. and Halobacillus amylolyticus sp. nov., isolated from saltern soil
Yiseul Kim, Seunghwan Kim, Soon-Wo Kwon, Hang-Yeon Weon, Hanako Naito, Tomomi Asano, Moriyuki Hamada, Jun Heo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Lignin-oxidizing and xylan-hydrolyzing Vibrio involved in the mineralization of plant detritus in the continental slope
Jianyang Li, Chunming Dong, Biswarup Sen, Qiliang Lai, Linfeng Gong, Guangyi Wang, Zongze Shao
Science of The Total Environment.2023; 854: 158714. CrossRef -
Alteromonas gilva sp. nov. and Erythrobacter fulvus sp. nov., isolated from a tidal mudflat
Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Sphingobium nicotianae sp. nov., isolated from tobacco soil
Rongrong Fan, Xiong Luo, Mengjuan Hong, Ruijia Yang, Xinyi Dong, Heli Shi, Mingshun Li
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Investigation of the potential of Brevibacillus spp. for the biosynthesis of nonribosomally produced bioactive compounds by combination of genome mining with MALDI-TOF mass spectrometry
Jennifer Jähne, Stefanie Herfort, Joerg Doellinger, Peter Lasch, Le Thi Thanh Tam, Rainer Borriss, Joachim Vater
Frontiers in Microbiology.2023;[Epub] CrossRef - Phylogenomic analysis of the genus Alcanivorax: proposal for division of this genus into the emended genus Alcanivorax and two novel genera Alloalcanivorax gen. nov. and Isoalcanivorax gen. nov.
Anusha Rai, Gandham Suresh, Biswas Ria, Vighnesh L, Sreya PK, Sahu Ipsita, Chintalapati Sasikala, Chintalapati Venkata Ramana
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Corynebacterium oculi-related bacterium may act as a pathogen and carrier of antimicrobial resistance genes in dogs: a case report
Milena Tresch, Christine Watté, Michele Stengard, Corinne Ritter, Isabelle Brodard, Simon Feyer, Estelle Gohl, Ezgi Akdesir, Vincent Perreten, Sonja Kittl
BMC Veterinary Research.2023;[Epub] CrossRef - Jeongeuplla avenae gen. nov., sp. nov., a novel β-carotene-producing bacterium that alleviates salinity stress in Arabidopsis
Lingmin Jiang, Yuxin Peng, Ki-Hyun Kim, Doeun Jeon, Hanna Choe, Ah-Reum Han, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2023;[Epub] CrossRef - Taxonomic descriptions of Aeromicrobium duanguangcaii sp. nov., Aeromicrobium wangtongii sp. nov. and Aeromicrobium senzhongii sp. nov.
Lin Ye, Gui Zhang, Jing Yang, Caixin Yang, Yue Liu, Ji Pu, Yuyuan Huang, Sihui Zhang, Dong Jin, Shan Lu, Liyun Liu, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Characterization of four novel bacterial species of the genus Sphingomonas, Sphingomonas anseongensis, Sphingomonas alba, Sphingomonas brevis and Sphingomonas hankyongi sp.nov., isolated from wet land
Muhammad Zubair Siddiqi, Govindan Rajivgandhi, Soon-Youl Lee, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Neiella litorisoli sp. nov., an alginate lyase: producing bacterium from South China Sea, and proposal of Echinimonadaceae fam. nov. in the order Alteromonadales
Jing-Ran Sun, Kun-Lian Mo, Xue Li, Yong-Hua Hu, Zhi-Yuan Liu, Hui-Qin Huang
Archives of Microbiology.2023;[Epub] CrossRef - Paraburkholderia flagellata sp. nov. and Paraburkholderia adhaesiva sp. nov., two novel species isolated from forest soil in Dinghushan Biosphere Reserve in Guangdong, China
Xiu-yin Guo, Ke-cheng Wu, Cheng-zhi Dong, Qiu-mei Zhang, Li-hong Qiu
Antonie van Leeuwenhoek.2023; 116(10): 1023. CrossRef - Comparative genomics reveals environmental adaptability and antimicrobial activity of a novel Streptomyces isolated from soil under black Gobi rocks
Ying Wen, Binglin Zhang, Gaosen Zhang, Minghui Wu, Ximing Chen, Tuo Chen, Guangxiu Liu, Wei Zhang
Antonie van Leeuwenhoek.2023; 116(12): 1407. CrossRef - Phylotaxonomic assessment based on four core gene sets and proposal of a genus definition among the families Paracoccaceae and Roseobacteraceae
Dao-Feng Zhang, Wei He, Zongze Shao, Iftikhar Ahmed, Yuqin Zhang, Wen-Jun Li, Zhe Zhao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Pseudarthrobacter humi sp. nov., an actinobacterium isolated from soil
Inhyup Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Salinimicrobium tongyeongense sp. nov., isolated from seawater
Dariimaa Ganbat, Dong-Woo Lee, Seong-Bo Kim, Yong-Jik Lee, Gaewon Nam, Won-Jae Chi, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Biocontrol potential of bacteria belonging to the Bacillus subtilis group against pests and diseases of agricultural interest through genome exploration
Gabriela Teodoro Rocha, Paulo Roberto Martins Queiroz, Priscila Grynberg, Roberto Coiti Togawa, Antônia Débora Camila de Lima Ferreira, Izabela Nunes do Nascimento, Ana Cristina Meneses Mendes Gomes, Rose Monnerat
Antonie van Leeuwenhoek.2023; 116(7): 599. CrossRef -
Mesorhizobium liriopis sp. nov., isolated from the fermented fruit of Liriope platyphylla a medicinal plant
Inhyup Kim, Geeta Chhetri, Yoonseop So, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Tianweitania aestuarii sp. nov., isolated from a coastal dune, reclassification of Corticibacterium populi as Tianweitania populi comb. nov., and emended description of the genus Tianweitania
Ji Hyeon Song, Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Roseobacter insulae sp. nov. and Loktanella gaetbuli sp. nov., isolated from tidal flats in the Yellow Sea in Korea
Eun Bee Lee, Sooyeon Park, Wonyong Kim, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi
Dongwook Kim, Cameron L M Gilchrist, Jongsik Chun, Martin Steinegger
Nucleic Acids Research.2023; 51(D1): D777. CrossRef - Bioassay and Whole-Genome Analysis of Bacillus velezensis FIO1408, a Biocontrol Agent Against Pathogenic Bacteria in Aquaculture
Wenhao Huang, Lingyun Qu, Ping Gao, Guangxun Du
Current Microbiology.2023;[Epub] CrossRef - VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution
Renmao Tian, Behzad Imanian
Microbiome.2023;[Epub] CrossRef - Neoroseomonas alba sp. nov., Neoroseomonas nitratireducens sp. nov., Paraoseomonas indoligenes sp. nov and Paraoseomonas baculiformis sp. nov., isolated from the rhizosphere of paddy soil
Yoonseop So, Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Sunho Park, Yonghee Jung, Taegun Seo
Antonie van Leeuwenhoek.2023; 116(10): 1009. CrossRef -
Microbacterium plantarum sp. nov. and Microbacterium thalli sp. nov., two endophytic metal-resistant bacteria isolated from Sphaeralcea angustifolia (Cav.) G. Don and Prosopis laevigata (Humb. et Bonpl. ex Willd) M.C. Johnston
Ivan Arroyo-Herrera, Brenda Román-Ponce, Rafael Bustamante-Brito, Joseph Guevara-Luna, Violeta Larios-Serrato, Lorena Carro, Jose Mariano Igual, Otto Geiger, Ayixon Sánchez-Reyes, Paulina Estrada-de los Santos, En Tao Wang, María Soledad Vásquez-Murrieta
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Genome insight and probiotic potential of three novel species of the genus Corynebacterium
Md Shamsuzzaman, Ram Hari Dahal, Shukho Kim, Jungmin Kim
Frontiers in Microbiology.2023;[Epub] CrossRef - Marinobacterium lacunae sp. nov. isolated from estuarine sediment
Srinivas Naga Radha Tanuku, Anil Kumar Pinnaka, Swarnaprava Behera, Aditya Singh, Sudharani Pydi, Gunjan Vasudeva, Bhumika Vaidya, Gunjan Sharma, Sampath Kumar Ganta, Naveen Sagar Garbhapu
Archives of Microbiology.2023;[Epub] CrossRef -
Solicola gregarius gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with Micrococcus luteus culture supernatant
Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Alena Filipova, Petr Pajer, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Draft Genome Sequence of
Afifella
sp. Strain JA880, Isolated from a Salt Pond
Jagadeeshwari Uppada, Sasikala Chintalapati, Venkata Ramana Chintalapati, J. Cameron Thrash
Microbiology Resource Announcements.2023;[Epub] CrossRef -
Sphingomonas cremea sp. nov., isolated from ginseng soil
Yuna Park, Qingzhen Liu, Soohyun Maeng, Hyejin Oh, Chan-Seok Yun, Hanna Choe, Hyang Burm Lee, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Marixanthotalea marina gen. nov., sp. nov., a bacterium in the family Flavobacteriaceae isolated from seawater
Zi-Yue Fu, Hua-Peng Xue, Wei He, Guang-Yuan Ma, Ai Hua Zhang, Dao-Feng Zhang, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Aerococcus agrisoli sp. nov., isolated from paddy soil
Lina Sun, Wen Qiu, Xinhua Gao, Zechao Cheng, Kaihua Huang, Wei Chen
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Bacillus changyiensis sp. nov., isolated from coastal sediment
Guiqian Xiao, Qiliang Lai, Guangyu Li, Shanshan Wang, Yunyong Lin, Zongze Shao, Zhong Hu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Whole-genome sequencing of a biocontrol Myxococcus xanthus R31 isolate and comparative genomic analysis
Honghong Dong, Ruixiang Gao, Yijie Dong, Qing Yao, Honghui Zhu
Gene.2023; 863: 147286. CrossRef - Comparative biodegradation analysis of three compostable polyesters by a marine microbial community
Ingrid E. Meyer Cifuentes, Julius Degenhardt, Meina Neumann-Schaal, Nico Jehmlich, David Kamanda Ngugi, Başak Öztürk, Ning-Yi Zhou
Applied and Environmental Microbiology.2023;[Epub] CrossRef -
Leucobacter allii sp. nov. and Leucobacter rhizosphaerae sp. nov., isolated from rhizospheres of onion and garlic, respectively
Seunghwan Kim, Tomomi Asano, Hanako Naito, Moriyuki Hamada, Hang-Yeon Weon, Soon-Wo Kwon, Jun Heo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Microcystis
pangenome reveals cryptic diversity within and across morphospecies
Haiyuan Cai, Christopher J. McLimans, Jessica E. Beyer, Lee R. Krumholz, K. David Hambright
Science Advances.2023;[Epub] CrossRef - Oricola nitratireducens sp. nov., a novel nitrate reducing bacterium isolated from marine sediment in East China Sea
Chaobo Guo, Xinyu Liu, Feilu Xie, Hong Ding, Shan He, Ning Wang, Weiyan Zhang
Antonie van Leeuwenhoek.2023; 116(7): 711. CrossRef -
Runella salmonicolor sp. nov. and Dyella lutea sp. nov., isolated from paddy field soil
Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Cellulosimicrobium fucosivorans is a later heterotypic synonym of Cellulosimicrobium composti
Lingmin Jiang, Ho Le Han
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Gymnodinialimonas phycosphaerae sp. nov., a phycosphere bacterium isolated from Karlodinium veneficum
Yuxin Peng, Lingmin Jiang, Yue Jiang, Jiyoon Seo, Doeun Jeon, Young-Min Kim, Zhun Li, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Larsenimonas rhizosphaerae sp. nov., isolated from a tidal mudflat
Soon Dong Lee, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Alcanivorax xiamenensis sp. nov., a novel marine hydrocarbonoclastic bacterium isolated from surface seawater
Qiliang Lai, Xiaoteng Fu, Jianning Wang, Chunming Dong, Liping Wang, Wanpeng Wang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
High-quality full genome assembly of historic
Xylella fastidiosa
strains from ICMP collection using a hybrid sequencing approach
Pragya Kant, Natasha Brohier, Rachel Mann, Luciano Rigano, Robert Taylor, Johanna Wong-Bajracharya, Toni A. Chapman, Monica Kehoe, Rebecca Roach, Brendan Rodoni, Fiona Constable, Vincent Michael Bruno
Microbiology Resource Announcements.2023;[Epub] CrossRef -
Comammox
Nitrospira
and Ammonia-Oxidizing Archaea Are Dominant Ammonia Oxidizers in Sediments of an Acid Mine Lake Containing High Ammonium Concentrations
Deyong Li, Zhichang Ren, Yangqi Zhou, Lugao Jiang, Min Zheng, Guoqiang Liu, Jennifer B. Glass
Applied and Environmental Microbiology.2023;[Epub] CrossRef - Combined Omics Approach Reveals Key Differences between Aerobic and Microaerobic Xylene-Degrading Enrichment Bacterial Communities: Rhodoferax─A Hitherto Unknown Player Emerges from the Microbial Dark Matter
András Táncsics, Sinchan Banerjee, André Soares, Anna Bedics, Balázs Kriszt
Environmental Science & Technology.2023; 57(7): 2846. CrossRef - Sinomonas cellulolyticus sp. nov., isolated from Loktak lake
Lhingjakim L. Khongsai, Jagadeeshwari Uppada, Shabbir Ahamad, Sasikala Chintalapati, Venkata Ramana Chintalapati
Antonie van Leeuwenhoek.2023; 116(12): 1421. CrossRef -
Genomic and metabolic insights into the first host-associated isolate of
Psychrilyobacter
Meijia Liu, Guangshan Wei, Qiliang Lai, Zhaobin Huang, Min Li, Zongze Shao, Konstantinos Aristomenis Kormas, Muhamad Amin, Ruixuan Wang
Microbiology Spectrum.2023;[Epub] CrossRef - Emergence of Raoultella ornithinolytica in human infections from different hospitals in Ecuador with OXA-48-producing resistance
José E. Villacís, Hugo G. Castelán-Sánchez, Jorge Rojas-Vargas, Ulises E. Rodríguez-Cruz, Viviana Albán, Jorge A. Reyes, Pablo M. Meza-Rodríguez, Sonia Dávila-Ramos, Fernando Villavicencio, Margarita Galarza, Monica C. Gestal
Frontiers in Microbiology.2023;[Epub] CrossRef -
Pseudodonghicola flavimaris sp. nov. and Sedimentitalea xiamensis sp. nov., two novel species belonging to the family Roseobacteraceae
Jiamei Huang, Jianning Wang, Guangyu Li, Qiliang Lai, Xuying Zhu, Shanshan Wang, Xiupian Liu, Zongze Shao, Liping Wang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Phylogeny and structural insights of lipase from Halopseudomonas maritima sp. nov., isolated from sea sand
Ritu Rani Archana Kujur, Manisha Ghosh, Surajit Basak, Subrata K. Das
International Microbiology.2023; 26(4): 1021. CrossRef -
Spirosoma oryzicola sp. nov., isolated from dried rice husk
Miyoung Won, Jun Heo, Hang-Yeon Weon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Characterization of metagenome-assembled genomes of two endo-archaea of Candida tropicalis
Uppada Jagadeeshwari, Chintalapati Sasikala, Anusha Rai, B. Indu, Sahu Ipsita, Chintalapati Venkata Ramana
Frontiers in Microbiomes.2023;[Epub] CrossRef -
Pontibacterium sinense sp. nov., a nitrate-reducing and thiosulphate-oxidizing bacterium, isolated from coastal sediment
Rui-Ying Chen, Rui-Jie Chen, De-Chen Lu, Ya Gong, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction
Seong-In Na, Michael James Bailey, Mauricio Chalita, Jae Hyoung Cho, Jongsik Chun
Journal of Microbiology.2023; 61(7): 683. CrossRef - Nocardioides pini sp. nov. and Nocardioides pinisoli sp. nov., two novel actinomycetes isolated from Pinus densiflora
Yoonseop So, Geeta Chhetri, Inhyup Kim, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology.2023;[Epub] CrossRef - Lacticaseibacillus huelsenbergensis sp. nov., isolated from grass silage and corn silage
Monika Grabner F., Monika Grabner H., Hermine Schein, Elisabeth Weidenholzer, Tobias Busche, Christian Rückert-Reed, Marlene Buchebner-Jance
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Desulfovibrio mangrovi sp. nov., a sulfate-reducing bacterium isolated from mangrove sediments: a member of the proposed genus “Psychrodesulfovibrio”
Jinjie Zhou, Cui-Jing Zhang, Meng Li
Antonie van Leeuwenhoek.2023; 116(6): 499. CrossRef - Devosia oryzisoli sp. nov., a novel moderately halotolerant bacterium isolated from the roots of rice plants and genome mining revealed the biosynthesis potential as plant growth promoter
Geeta Chhetri, Inhyup Kim, Taegun Seo
Antonie van Leeuwenhoek.2023; 116(3): 231. CrossRef - Phosphorus Removal and Storage Polymer Synthesis by Tetrasphaera-Related Bacteria with Different Carbon Sources
Zhaonian Yu, Shaoyi Xu, Peiliang Wang, Dezhao Liu, Huijie Lu
ACS ES&T Water.2023; 3(5): 1374. CrossRef -
Phycobacter azelaicus gen. nov. sp. nov., a diatom symbiont isolated from the phycosphere of Asterionellopsis glacialis
Lisa S. Y. Coe, Cong Fei, James Weston, Shady A. Amin
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Fluviispira vulneris sp. nov., isolated from human wound secretions
Peijuan Tang, Na Peng, Pengwen Ouyang, Sheng Long, Zhenhua Wei, Xingchun Chen, Pinghua Qu, Liangyi Xie
Antonie van Leeuwenhoek.2023; 116(12): 1305. CrossRef - Revisiting the taxonomy of the genus Rhodopirellula with the proposal for reclassification of the genus to Rhodopirellula sensu stricto, Aporhodopirellula gen. nov., Allorhodopirellula gen. nov. and Neorhodopirellula gen. nov
Pannikurungottu Sreya, Gandham Suresh, Anusha Rai, Biswas Ria, Lakshmanan Vighnesh, Vaibhav Chandrakant Agre, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana
Antonie van Leeuwenhoek.2023; 116(3): 243. CrossRef -
Nocardioides cremeus sp. nov., Nocardioides abyssi sp. nov. and Nocardioides oceani sp. nov., three actinobacteria isolated from Western Pacific Ocean sediment
Wenjing Wang, Yihan Ding, Shiping Wei, Miaomiao Yin, Gaiyun Zhang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Gracilimonas sediminicola sp. nov., a moderately halotolerant bacterium isolated from seaweed sediment collected in the East Sea, Republic of Korea
Yunjeong Lee, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Peptoniphilus equinus sp. nov., a novel Gram-stain-positive anaerobic coccus isolated from the faeces of a thoroughbred racehorse
Hye Su Jung, Jeong Ui Yun, Mi-Ja Jung, Hye Seon Song, Yeon Bee Kim, Yujin Kim, Joon-Gyu Kim, Che Ok Jeon, Seong Woon Roh, Tae Woong Whon, Se Hee Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Holtiella tumoricola gen. nov. sp. nov., isolated from a human clinical sample
Emma Allen-Vercoe, Michelle C. Daigneault, Sarah J. Vancuren, Kyla Cochrane, Lindsey L. O’Neal, Krithivasan Sankaranarayanan, Paul A. Lawson
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Gimibacter soli gen. nov. sp. nov., isolated from mangrove soil and insight into its ecological distribution and metabolic potential
Yang Liu, Tao Pei, Jiao Duan, Juan Du, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Flavobacterium frigoritolerans sp. nov. and Flavobacterium shii sp. nov., isolated from glaciers on the Tibetan Plateau
Lei-Lei Yang, Hong-Can Liu, Yu-Hua Xin, Qing Liu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Leucobacter edaphi sp. nov., a highly chromate-tolerant bacterium isolated from chromium containing chemical plant soil
Bijun Zheng, Zhe Xu, Li Yang, Guangyang Jiang, Jia Chen, Yichen Yang, Yongqiang Tian
Antonie van Leeuwenhoek.2023; 116(12): 1433. CrossRef - Nitratireductor luteus sp. nov. isolated from saline-alkali land
Xinping Yang, Liuyan Zhou, Xiaowu Wang, Zhifang Wang, Pengbin Li, Jinping Dai, Huitao Zhang, Yuqing Xie
Antonie van Leeuwenhoek.2023; 116(3): 221. CrossRef -
Melaminivora suipulveris sp. nov., isolated from pigpen dust
Miyoung Won, Jun Heo, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Trinickia violacea sp. nov. and Trinickia terrae sp. nov., isolated from forest soil
Zeng-hong Gao, Xiu-yin Guo, Yi-zhi Liu, Qiu-mei Zhang, Xin-jie Tong, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Polycladospora coralii gen. nov., sp. nov., a novel member of the family Thermoactinomycetaceae isolated from stony coral in the South China Sea
Kunlian Mo, Huiqin Huang, Lin Ye, Qingjuan Wu, Yong hua Hu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Comparative genomics and transcriptomics insight into myxobacterial metabolism potentials and multiple predatory strategies
Chunling Wang, Yi Xiao, Yong Wang, Yumin Liu, Qing Yao, Honghui Zhu
Frontiers in Microbiology.2023;[Epub] CrossRef - Acinetobacter thutiue sp. nov. Isolated from Oil-Contaminated Soil in Motorbike Repair Workshops
Nhan Le Thi Tuyet, Jaisoo Kim
Diversity.2023; 15(12): 1179. CrossRef -
Chryseobacterium edaphi sp. nov. and Chryseobacterium gilvum sp. nov., isolated from soil
Yonghee Jung, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Haejin Woo, Ki-Ho Lee, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Ten Novel Species Belonging to the Genus Flavobacterium, Isolated from Freshwater Environments: F. praedii sp. nov., F. marginilacus sp. nov., F. aestivum sp. nov., F. flavigenum sp. nov., F. luteolum sp. nov., F. gelatinilyticum sp. nov., F. aquiphilum s
Hyunyoung Jo, Miri S. Park, Yeonjung Lim, Ilnam Kang, Jang-Cheon Cho
Journal of Microbiology.2023; 61(5): 495. CrossRef - Description of Flavobacterium agricola sp. nov., an auxin producing bacterium isolated from paddy field
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
Antonie van Leeuwenhoek.2023; 116(12): 1345. CrossRef - Blastopirellula sediminis sp. nov. a new member of Pirellulaceae isolated from the Andaman and Nicobar Islands
P. K. Sreya, Kumar Gaurav, Shabbir Ahmed, Chintalapati Sasikala, Chintalapati Venkata Ramana
Antonie van Leeuwenhoek.2023; 116(5): 463. CrossRef - Macromonas nakdongensis sp. nov., Isolated from Freshwater and Characterization of Bacteriophage BK-30P—The First Phage That Infects Genus Macromonas
Kiwoon Baek, Ahyoung Choi
Microorganisms.2023; 11(9): 2237. CrossRef -
Sphingomonas lycopersici sp. nov., isolated from tomato rhizosphere soil
Ruixiang Gao, Honghong Dong, Yang Liu, Qing Yao, Huaping Li, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Staphylococcus brunensis
sp. nov. isolated from human clinical specimens with a staphylococcal cassette chromosome-related genomic island outside of the
rlmH
gene bearing the
ccrDE
r
Vojtěch Kovařovic, Adéla Finstrlová, Ivo Sedláček, Petr Petráš, Pavel Švec, Ivana Mašlaňová, Meina Neumann-Schaal, Ondrej Šedo, Tibor Botka, Eva Staňková, Jiří Doškař, Roman Pantůček, Shannon D. Manning
Microbiology Spectrum.2023;[Epub] CrossRef - The Raphidiopsis (= Cylindrospermopsis) raciborskii pangenome updated: Two new metagenome-assembled genomes from the South American clade
Marcele Laux, Carlos Morais Piroupo, João Carlos Setubal, Alessandra Giani
Harmful Algae.2023; 129: 102518. CrossRef -
Marivirga aurantiaca sp. nov., a halophilic nitrite-reducing bacterium, isolated from intertidal surface sediments
Mingxia Zhang, Yulian Zhang, Qing Yao, Fan Yang, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Agromyces chromiiresistens sp. nov., Novosphingobium album sp. nov., Sphingobium arseniciresistens sp. nov., Sphingomonas pollutisoli sp. nov., and Salinibacterium metalliresistens sp. nov.: five new members of Microbacteriaceae and Sphingomonadaceae from
Ze-Shen Liu, Ke-Huan Wang, Man Cai, Mei-Ling Yang, Xiao-Kang Wang, Hong-Lin Ma, Yi-Han Yuan, Lin-Huan Wu, De-Feng Li, Shuang-Jiang Liu
Frontiers in Microbiology.2023;[Epub] CrossRef -
Sphingomonas oryzagri sp. nov., isolated from a rice field
Md. Amdadul Huq, Sun-Young Lee, Md. Shahedur Rahman, Shahina Akter
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Tsuneonella litorea sp. nov., a novel carotenoid-producing bacterium isolated from coastal sediment
Yizhou He, Yang Liu, Tao Pei, Jiao Duan, Juan Du, Xiaoqin Deng, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Gramella oceanisediminis sp. nov., isolated from deep-sea sediment of the Indian Ocean
Lin Yang, Haolei Shi, Qian Li, Minggang Zheng, Qiliang Lai, Li Zheng
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Pseudomonas petrae sp. nov. isolated from regolith samples in Antarctica
Dana Nováková, Vendula Koublová, Karel Sedlář, Eva Staňková, Stanislava Králová, Pavel Švec, Meina Neumann-Schaal, Jacqueline Wolf, Sylva Koudelková, Miloš Barták, Ivo Sedláček
Systematic and Applied Microbiology.2023; 46(4): 126424. CrossRef -
Paraflavisolibacter caeni gen. nov., sp. nov., a novel taxon within the family Chitinophagaceae isolated from sludge
Cansheng Yuan, Bin Liu, Lin Wang, Weihua Long, Zhuang Ke, Jian He
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Shimia ponticola sp. nov., an aerobic anoxygenic photoheterotrophic bacterium, isolated from surface seawater in the South China Sea
Qi Chen, Bowen He, Ta-Hui Lin, Nianzhi Jiao, Qiang Zheng
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - From sequences to species: Charting the phytoplasma classification and taxonomy in the era of taxogenomics
Kiran Kirdat, Bhavesh Tiwarekar, Shivaji Sathe, Amit Yadav
Frontiers in Microbiology.2023;[Epub] CrossRef -
Thermobacterium salinum gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a hydrothermal zone
Beihan Chen, Haichen Zhang, Dan Lin, Jianing Ye, Kai Tang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Phenotypic and Genomic Characterization of Streptomyces pakalii sp. nov., a Novel Species with Anti-Biofilm and Anti-Quorum Sensing Activity in ESKAPE Bacteria
Michelle Chávez-Hernández, Jossue Ortiz-Álvarez, Jesús Morales-Jiménez, Lourdes Villa-Tanaca, César Hernández-Rodríguez
Microorganisms.2023; 11(10): 2551. CrossRef -
Dyella humicola sp. nov., Dyella subtropica sp. nov., Dyella silvatica sp. nov. and Dyella silvae sp. nov., isolated from subtropical forest soil
Guang-Da Feng, Xiaoqin Deng, Jiali Li, Wendi Chen, Xianjiao Zhang, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Hufsiella ginkgonis gen. nov., sp. nov. and Hufsiella arboris sp. nov., isolated from tree barks
Heeyoung Kang, Seokhyeon Bae, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description ofDefluviimonas salinarumsp. nov. with the potential of benzene-degradation isolated from saltern in the Yellow Seacoast
Yunjeong Lee, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
FEMS Microbiology Letters.2023;[Epub] CrossRef - Genomic potential for inorganic carbon sequestration and xenobiotic degradation in marine bacterium Youngimonas vesicularis CC-AMW-ET affiliated to family Paracoccaceae
Asif Hameed, Kokkarambath Vannadil Suchithra, Shih-Yao Lin, Paul Stothard, Chiu-Chung Young
Antonie van Leeuwenhoek.2023; 116(11): 1247. CrossRef - Polyphasic Characterization and Genomic Insights into an Aerobic Denitrifying Bacterium, Shewanella zhuhaiensis sp. nov., Isolated from a Tidal Flat Sediment
Yang Liu, Tao Pei, Juan Du, Honghui Zhu
Microorganisms.2023; 11(12): 2870. CrossRef -
Pseudomonas quebecensis sp. nov., a bacterium isolated from root-zone soil of a native legume, Amphicarpaea bracteata (L.) Fernald, in Quebec, Canada
James T. Tambong, Renlin Xu, Sylvia I. Chi, Isabelle Birugu, Sylvia Bachelet, Conrad Hutter, Marc-Olivier Duceppe, Stephan Brière
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Taxogenomics of Alkalihalobacterium chitinilyticum sp. nov.: an alkaliphilic chitin degrading bacterial strain isolated from Lonar Lake, India, with potential biotechnological applications
Sonia Thite, Kamakshi Tarwadge, Purva Mengade, Tushar Lodha, Neetha Joseph, Lucky Thakkar, Amaraja Joshi
Antonie van Leeuwenhoek.2023; 116(11): 1103. CrossRef - Characterization of two novel chemolithoautotrophic bacteria of Sulfurovum from marine coastal environments and further comparative genomic analyses revealed species differentiation among deep-sea hydrothermal vent and non-vent origins
Jun Wang, Qiang Zheng, Shasha Wang, Jialing Zeng, Qing Yuan, Yangsheng Zhong, Lijing Jiang, Zongze Shao
Frontiers in Marine Science.2023;[Epub] CrossRef - Pseudomonas citri sp. nov., a potential novel plant growth promoting bacterium isolated from rhizosphere soil of citrus
Hong Gao, Guang-Da Feng, Zengwei Feng, Qing Yao, Jiali Li, Xiaoqin Deng, Xiaoran Li, Honghui Zhu
Antonie van Leeuwenhoek.2023; 116(3): 281. CrossRef -
Pontibacter liquoris sp. nov. and Pontibacter vulgaris sp. nov., two novel bacteria isolated from the pit mud of Chinese liquor
Chaobo Guo, Haohao Wang, Xinyu Liu, Yifan Guo, Shan He, Lijian Ding, Weiyan Zhang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Pseudophaeobacter profundi sp. nov., isolated from the Western Pacific Ocean
Xuying Zhu, Liping Wang, Qiliang Lai, Jianning Wang, Jiamei Huang, Guangyu Li, Lingyu Zeng, Jingyu Xia, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Physiological and genomic analyses of cobalamin (vitamin B12)-auxotrophy of Lysobacter auxotrophicus sp. nov., a methionine-auxotrophic chitinolytic bacterium isolated from chitin-treated soil
Akihiro Saito, Hideo Dohra, Moriyuki Hamada, Ryota Moriuchi, Yohei Kotsuchibashi, Koji Mori
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Cale O. Seymour, Marike Palmer, Eric D. Becraft, Ramunas Stepanauskas, Ariel D. Friel, Frederik Schulz, Tanja Woyke, Emiley Eloe-Fadrosh, Dengxun Lai, Jian-Yu Jiao, Zheng-Shuang Hua, Lan Liu, Zheng-Han Lian, Wen-Jun Li, Maria Chuvochina, Brianna K. Finley
Nature Microbiology.2023; 8(4): 727. CrossRef - Genome-resolved metagenomics provides insights into the microbial-mediated sulfur and nitrogen cycling in temperate seagrass meadows
Pengyuan Liu, Songbao Zou, Haikun Zhang, Qing Liu, Zenglei Song, Yanyan Huang, Xiaoke Hu
Frontiers in Marine Science.2023;[Epub] CrossRef - ComammoxNitrospirabacteria outnumber canonical nitrifiers irrespective of electron donor mode and availability in biofiltration systems
Katherine J Vilardi, Irmarie Cotto, Maria Sevillano, Zihan Dai, Christopher L Anderson, Ameet Pinto
FEMS Microbiology Ecology.2022;[Epub] CrossRef - Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans
Marcele P. Martins, Mariana A. B. Morais, Gabriela F. Persinoti, Rafael H. Galinari, Li Yu, Yoshihisa Yoshimi, Fernanda B. Passos Nunes, Tatiani B. Lima, Shayla F. Barbieri, Joana L. M. Silveira, Vincent Lombard, Nicolas Terrapon, Paul Dupree, Bernard Hen
Acta Crystallographica Section D Structural Biology.2022; 78(11): 1358. CrossRef - Alexandriicola marinus gen. nov., sp. nov., a new member of the family Rhodobacteraceae isolated from marine phycosphere
Wen-Zhuo Zhu, Hui-Min Gao, Ya-Ming Ge, Jun Dai, Xi Yang, Xiao-Ling Zhang, Qiao Yang
Antonie van Leeuwenhoek.2022; 115(4): 473. CrossRef - In silico, in vitro and in vivo safety evaluation of Limosilactobacillus reuteri strains ATCC PTA-126787 & ATCC PTA-126788 for potential probiotic applications
Dharanesh Gangaiah, Shrinivasrao P. Mane, Nilesh R. Tawari, Nallakannu Lakshmanan, Valerie Ryan, Alyssa Volland, Dwi Susanti, Milind Patel, Abraham Abouzeid, Emily B. Helmes, Arvind Kumar, Konstantinos Papadimitriou
PLOS ONE.2022; 17(1): e0262663. CrossRef -
Alicyclobacillus curvatus sp. nov. and Alicyclobacillus mengziensis sp. nov., two acidophilic bacteria isolated from acid mine drainage
Zhen Jiang, Dildar Wu, Zong-Lin Liang, Xiu-Tong Li, Ye Huang, Nan Zhou, Zheng-Hua Liu, Guang-Ji Zhang, Yan Jia, Hua-Qun Yin, Shuang-Jiang Liu, Cheng-Ying Jiang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Genome-based taxonomic classification of the closest-to-Comamonadaceae group supports a new family Sphaerotilaceae fam. nov. and taxonomic revisions
Yang Liu, Juan Du, Tao Pei, Hanqin Du, Guang-Da Feng, Honghui Zhu
Systematic and Applied Microbiology.2022; 45(6): 126352. CrossRef -
Paraphocaeicola brunensis
gen. nov., sp. nov., Carrying Two Variants of
nimB
Resistance Gene from Bacteroides fragilis, and
Caecibacteroides pullorum
gen. nov., sp. nov., Two Novel G
Stanislava Kralova, Lenka Davidova-Gerzova, Adam Valcek, Matej Bezdicek, Ivan Rychlik, Veronika Rezacova, Alois Cizek, Jeffrey A. Gralnick
Microbiology Spectrum.2022;[Epub] CrossRef - Antrihabitans stalagmiti sp. nov., isolated from a larva cave and a proposal to transfer Rhodococcus cavernicola Lee et al. 2020 to a new genus Spelaeibacter as Spelaeibacter cavernicola gen. nov. comb. nov
Sung-Min Kim, Soon Dong Lee, Young Sang Koh, In Seop Kim
Antonie van Leeuwenhoek.2022; 115(4): 521. CrossRef - Sphingopyxis lutea sp. nov., a novel moderately halotolerant bacterium isolated from pebbles
Geeta Chhetri, Inhyup Kim, Taegun Seo
Archives of Microbiology.2022;[Epub] CrossRef -
Nocardioides nematodiphilus sp. nov., isolated from rhizosphere of Arabidopsis thaliana
Xue-Mei Zhang, Wan-Ting Mo, Yu-Qian Wei, Xin Li, Gui-Mei Ma, Yu-Sen Yang, Xue-Jian Wang, Jian-Jin Liu, Zi-Yi Liu, Xing-Kui Zhou, Ti-Kun Zhang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Sedimentimonas flavescens gen. nov., sp. nov., isolated from sediment of Clam Island, Liaoning Province
Lulu Mu, Xueping Zhang, Yanfeng Zhang, Zemin Fang, Yazhong Xiao
Antonie van Leeuwenhoek.2022; 115(8): 979. CrossRef - Pseudomonas oligotrophica sp. nov., a Novel Denitrifying Bacterium Possessing Nitrogen Removal Capability Under Low Carbon–Nitrogen Ratio Condition
Mingxia Zhang, Anzhang Li, Qing Yao, Botao Xiao, Honghui Zhu
Frontiers in Microbiology.2022;[Epub] CrossRef - Panacibacter microcysteis sp. nov., isolated from a eutrophic reservoir during the Microcystis bloom period
Ve Van Le, So-Ra Ko, Mingyeong Kang, Sang-Ah Lee, Hee-Mock Oh, Chi-Yong Ahn
Archives of Microbiology.2022;[Epub] CrossRef - Ruegeria alba sp. nov., Isolated from a Tidal Flat Sediment
Juan Du, Yang Liu, Tao Pei, Anzhang Li, Honghui Zhu
Current Microbiology.2022;[Epub] CrossRef - Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
Yuna Park, Leonid N. Ten, Young Koung Lee, Hee‑Young Jung, Myung Kyum Kim
Archives of Microbiology.2022;[Epub] CrossRef - Oral and gut dysbiosis leads to functional alterations in Parkinson’s disease
Sungyang Jo, Woorim Kang, Yun Su Hwang, Seung Hyun Lee, Kye Won Park, Mi Sun Kim, Hyunna Lee, Hyung Jeong Yoon, Yoo Kyoung Park, Mauricio Chalita, Je Hee Lee, Hojun Sung, Jae-Yun Lee, Jin-Woo Bae, Sun Ju Chung
npj Parkinson's Disease.2022;[Epub] CrossRef -
Colwellia maritima sp. nov. and Polaribacter marinus sp. nov., isolated from seawater
Sylvia Kristyanto, Jaejoon Jung, Jeong Min Kim, Keunpil Kim, Mi-hwa Lee, Lujiang Hao, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Hymenobacter translucens sp. nov. and Hymenobacter pini sp. nov. isolated from soil
Minji Bang, Myung Kyum Kim, Hee‑Young Jung
Archives of Microbiology.2022;[Epub] CrossRef -
Chryseobacterium subflavum sp. nov., isolated from soil
Delong Kong, Yan Wang, Qingqing Li, Yanzheng Zhou, Xu Jiang, Zhen Xing, Zhiye Wang, Zhiyong Ruan
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Acetobacter vaccinii sp. nov., a novel acetic acid bacterium isolated from blueberry fruit (Vaccinium corymbosum L.)
Jun Heo, Atena Sadat Sombolestani, David Laureys, Jessika De Clippeleer, Miyoung Won, Peter Vandamme, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Neotabrizicola shimadae gen. nov., sp. nov., an aerobic anoxygenic phototrophic bacterium harbouring photosynthetic genes in the family Rhodobacteraceae, isolated from a terrestrial hot spring
So Muramatsu, Setsuko Hirose, Takao Iino, Moriya Ohkuma, Satoshi Hanada, Shin Haruta
Antonie van Leeuwenhoek.2022; 115(6): 731. CrossRef -
Pedomonas mirosovicensis gen. nov., sp. nov., a bacterium isolated from soil with the aid of Micrococcus luteus culture supernatant containing resuscitation-promoting factor
Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Petr Pajer, Jacqueline Wolf, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Streptococcus
oriscaviae
sp. nov. Infection Associated with Guinea Pigs
Jade L. L. Teng, Yuanchao Ma, Jonathan H. K. Chen, Ruibang Luo, Chuen-Hing Foo, Tsz Tuen Li, Jordan Y. H. Fong, Weiming Yao, Samson S. Y. Wong, Kitty S. C. Fung, Susanna K. P. Lau, Patrick C. Y. Woo, Jasna Kovac
Microbiology Spectrum.2022;[Epub] CrossRef -
Paracidobacterium acidisoli gen. nov., sp. nov. and Alloacidobacterium dinghuense gen. nov., sp. nov., two acidobacteria isolated from forest soil, and reclassification of Acidobacterium ailaaui and Acidipila dinghuensis as Pseudacidobacteriu
Qiu-mei Zhang, Jia-cheng Fu, Zhi-qin Chen, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Non‐ribosomal peptide biosynthetic potential of the nematode symbiont Photorhabdus
Ao‐Qi Du, Ti‐Ti Ying, Zhen‐Yi Zhou, Wen‐Chao Yu, Gang‐Ao Hu, Xian Luo, Man‐Jing Ma, Yan‐Lei Yu, Hong Wang, Bin Wei
Environmental Microbiology Reports.2022; 14(6): 917. CrossRef -
Chryseobacterium oryzae sp. nov. and Chryseobacterium suipulveris sp. nov., isolated from Andong sikhye and pigpen dust, respectively
Jun Heo, Miyoung Won, Daseul Lee, Jeong-Seon Kim, Byeong-Hak Han, Soo-Jin Kim, Seung-Beom Hong, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Metagenomic evidence of a novel family of anammox bacteria in a subsea environment
Carolina Suarez, Paula Dalcin Martins, Mike S.M. Jetten, Sabina Karačić, Britt Marie Wilén, Oskar Modin, Per Hagelia, Malte Hermansson, Frank Persson
Environmental Microbiology.2022; 24(5): 2348. CrossRef - Evolutionary Principles of Bacterial Signaling Capacity and Complexity
Ran Mo, Yugeng Liu, Yuanyuan Chen, Yingjin Mao, Beile Gao, Qijing Zhang
mBio.2022;[Epub] CrossRef - Pseudomonas phenolilytica sp. nov., a novel phenol-degrading bacterium
Ritu Rani Archana Kujur, Subrata K. Das
Archives of Microbiology.2022;[Epub] CrossRef -
Pontibacter pamirensis sp. nov., isolated from saline-alkaline soil
Fang Liu, Yang-Yang Liu, Yu-Qian Li, Rui-Feng Lei, Qin Ma, Dilireba Abudourousuli, Zulihumaer Rouzi, Muyesaier Aosiman, Deng-Di An, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Limosilactobacillus reuteri
DS0384 promotes intestinal epithelial maturation via the postbiotic effect in human intestinal organoids and infant mice
Hana Lee, Kwang Bo Jung, Ohman Kwon, Ye Seul Son, Eunho Choi, Won Dong Yu, Naeun Son, Jun Hyoung Jeon, Hana Jo, Haneol Yang, Yeong Rak Son, Chan-Seok Yun, Hyun-Soo Cho, Sang Kyu Kim, Dae-Soo Kim, Doo-Sang Park, Mi-Young Son
Gut Microbes.2022;[Epub] CrossRef - Some like it cold: the cellular organization and physiological limits of cold‐tolerant nitrite‐oxidizing Nitrotoga
Sabine Keuter, Hanna Koch, Katharina Sass, Simone Wegen, Natuschka Lee, Sebastian Lücker, Eva Spieck
Environmental Microbiology.2022; 24(4): 2059. CrossRef - Horticoccus luteus gen. nov., sp. nov., A Novel Member of the Phylum Verrucomicrobia Isolated from a Dichlorodiphenyltrichloroethane (DDT)-Contaminated Orchard Soil
Joon-hui Chung, Ja-Yeon Lee, Geun-Hyung Choi, Miyoung Won, Jehyeong Yeon, Younggun Yoon, Si-Hyun An, Da-Yeon Kim, InCheol Park, Ye-eun Kim, Jae-Hyung Ahn
Current Microbiology.2022;[Epub] CrossRef - Burkholderia orbicola sp. nov., a novel species within the Burkholderia cepacia complex
Leslie-Mariana Morales-Ruíz, Mariana Rodríguez-Cisneros, Jeniffer-Chris Kerber-Díaz, Fernando-Uriel Rojas-Rojas, J. Antonio Ibarra, Paulina Estrada-de los Santos
Archives of Microbiology.2022;[Epub] CrossRef - Assessing the utility of mitochondrial gene markers in the family Suessiaceae (Dinophyta) with phylogenomic validation
Se Hyeon Jang, Seong In Na, Moo Joon Lee, Yeong Du Yoo
Molecular Phylogenetics and Evolution.2022; 177: 107625. CrossRef - Taxonomic and Bioactivity Characterizations of Mameliella alba Strain LZ-28 Isolated from Highly Toxic Marine Dinoflagellate Alexandrium catenella LZT09
Cheng-Zhe Ren, Hui-Min Gao, Jun Dai, Wen-Zhuo Zhu, Fei-Fei Xu, Yun Ye, Xiao-Ling Zhang, Qiao Yang
Marine Drugs.2022; 20(5): 321. CrossRef -
Nocardioides panacis sp. nov., isolated from soil of a ginseng field
Yuna Park, Qingzhen Liu, Soohyun Maeng, Won Jung Choi, Yoonjee Chang, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Water quality drives the distribution of freshwater cable bacteria
Meijun Dong, Shan Yang, Xunan Yang, Meiying Xu, Wenzhe Hu, Bin Wang, Youda Huang, Jiarou Xu, Huibin Lu, Yonggang Yang, Xingjuan Chen, Haobin Huang, Guoping Sun
Science of The Total Environment.2022; 841: 156468. CrossRef -
Vibrio ostreae sp. nov., a novel gut bacterium isolated from a Yellow Sea oyster
Neak Muhammad, Tra T.H. Nguyen, Yong-Jae Lee, Jaeho Ko, Forbes Avila, Song-Gun Kim
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Flavobacterium endoglycinae sp. nov., an endophytic bacterium isolated from soybean (Glycine max L. cv. Gwangan) stems
Jiyoon Seo, Yuxin Peng, Lingmin Jiang, Sang-Beom Lee, Rae-Dong Jeong, Soon Ju Park, Cha Young Kim, Man-Soo Choi, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Draft Genome Sequence of Methanobacterium paludis IBT-C12, Recovered from Sediments of the Apatlaco River, Mexico
Erick Alejandro Sánchez-Salazar, Lizbeth Hernández-Jaimes, Luz Breton-Deval, Ayixon Sánchez-Reyes, Frank J. Stewart
Microbiology Resource Announcements.2022;[Epub] CrossRef - Successful Direct Whole Genome Sequencing and Revivification of Freeze-Dried Nontuberculous Mycobacteria after More than Half a Century of Storage
Xenia Emilie Sinding Iversen, Anders Norman, Dorte Bek Folkvardsen, Erik Svensson, Erik Michael Rasmussen, Troels Lillebaek, Sébastien P. Faucher
Microbiology Spectrum.2022;[Epub] CrossRef - Bacterial filamentation as a mechanism for cell-to-cell spread within an animal host
Tuan D. Tran, Munira Aman Ali, Davin Lee, Marie-Anne Félix, Robert J. Luallen
Nature Communications.2022;[Epub] CrossRef - Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility
Anny Cárdenas, Jean-Baptiste Raina, Claudia Pogoreutz, Nils Rädecker, Jeremy Bougoure, Paul Guagliardo, Mathieu Pernice, Christian R Voolstra
The ISME Journal.2022; 16(10): 2406. CrossRef - Comparative Genomics Reveal the Animal-Associated Features of the Acanthopleuribacteraceae Bacteria, and Description of Sulfidibacter corallicola gen. nov., sp., nov.
Guanghua Wang, Yuanjin Li, Jianfeng Liu, Biao Chen, Hongfei Su, Jiayuan Liang, Wen Huang, Kefu Yu
Frontiers in Microbiology.2022;[Epub] CrossRef - Dyella sedimenti sp. nov., Isolated from the Sediment of a Winery
Li Gao, Yuan-Dong Li, Xing-Kui Zhou, Xiu-Ming Liu, Hui-Tian Li, Wen-Jun Li, Yan-Qing Duan
Current Microbiology.2022;[Epub] CrossRef - Arenibacterium arenosum sp. nov., isolated from sea sand
Jiseon Jeong, Veeraya Weerawongwiwat, Jong-Hwa Kim, Min Kuk Suh, Han Sol Kim, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
Archives of Microbiology.2022;[Epub] CrossRef -
Gordonia pseudamarae sp. nov., a home for novel actinobacteria isolated from stable foams on activated sludge wastewater treatment plants
Raúl Riesco, Jayson J. A. Rose, Steven Batinovic, Steve Petrovski, Fernando Sánchez-Juanes, Robert J. Seviour, Michael Goodfellow, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing data
Berenike Kircher, Sabrina Woltemate, Frank Gutzki, Dirk Schlüter, Robert Geffers, Heike Bähre, Marius Vital
Gut Microbes.2022;[Epub] CrossRef - Kaistella soli sp. nov., isolated from oil-contaminated experimental soil
Dhiraj Kumar Chaudhary, Ram Hari Dahal, Joung-Ho Park, Yongseok Hong
Archives of Microbiology.2022;[Epub] CrossRef - Halomonas salinarum sp. nov., a moderately halophilic bacterium isolated from saline soil in Yingkou, China
Ya-Lin Yin, Fang-Ling Li, Lei Wang
Archives of Microbiology.2022;[Epub] CrossRef - Neoroseomonas marina sp. nov., Isolated from a Beach Sand
Anusha Rai, Jagadeeshwari Uppada, Deepshikha Gupta, Smita Nandardhane, Ipsita Sahu, Sasikala Chintalapati, Venkata Ramana Chintalapati
Current Microbiology.2022;[Epub] CrossRef - Paenibacillus albicereus sp. nov. and Niallia alba sp. nov., isolated from digestive syrup
Vipool Thorat, Kiran Kirdat, Bhavesh Tiwarekar, Priyanka Dhanavade, Prachi Karodi, Yogesh Shouche, Shivaji Sathe, Tushar Lodha, Amit Yadav
Archives of Microbiology.2022;[Epub] CrossRef - Identification of Mucilaginibacter conchicola sp. nov., Mucilaginibacter achroorhodeus sp. nov. and Mucilaginibacter pallidiroseus sp. nov. and emended description of the genus Mucilaginibacter
Jiyoun Kim, Byungjo Lee, Geeta Chhetri, Inhyup Kim, Yoonseop So, Wonhee Jang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Pusillimonas faecipullorum sp. nov., isolated from the poultry manure
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Yu-Shan Tang, Chiu-Chung Young
Archives of Microbiology.2022;[Epub] CrossRef - Unveiling the genomic potential of Pseudomonas type strains for discovering new natural products
Zaki Saati-Santamaría, Nelly Selem-Mojica, Ezequiel Peral-Aranega, Raúl Rivas, Paula García-Fraile
Microbial Genomics
.2022;[Epub] CrossRef - A genomic overview including polyphasic taxonomy of Thalassoroseus pseudoceratinae gen. nov., sp. nov. isolated from a marine sponge, Pseudoceratina sp.
Gaurav Kumar, Uppada Jagadeeshwari, Pannikurungottu Sreya, Ahmed Shabbir, Chintalapati Sasikala, Chintalapati Venkata Ramana
Antonie van Leeuwenhoek.2022; 115(7): 843. CrossRef -
Novosphingobium percolationis sp. nov. and Novosphingobium huizhouense sp. nov., isolated from landfill leachate of a domestic waste treatment plant
Xiaoling He, Huibin Lu, Wenzhe Hu, Tongchu Deng, Xiaofan Gong, Xunan Yang, Da Song, Mei He, Meiying Xu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Development of a Novel Real-Time Polymerase Chain Reaction Assay to DetectEscherichia albertiiin Chicken Meat
Sakura Arai, Tadasuke Ooka, Mizuha Shibata, Yuhki Nagai, Yuki Tokoi, Hiromi Nagaoka, Rika Maeda, Akihiko Tsuchiya, Yuka Kojima, Kenji Ohya, Takahiro Ohnishi, Noriko Konishi, Kayoko Ohtsuka, Yukiko Hara-Kudo
Foodborne Pathogens and Disease.2022; 19(12): 823. CrossRef -
Psychroflexus curvus sp. nov., Psychroflexus longus sp. nov. and Psychroflexus montanilacus sp. nov., isolated from salt lakes on the Tibetan Plateau
Huibin Lu, Peixin Gao, Dorji Phurbu, Qinglong Wu, Peng Xing
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Tumebacillus amylolyticus sp. nov., isolated from garden soil in Korea
Minchung Kang, Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Yoonseop So, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
Su-Won Jeong, Jeong Eun Han, June-Young Lee, Ji-Ho Yoo, Do-Yeon Kim, In Chul Jeong, Jee-Won Choi, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Euon Jung Tak, Hojun Sung, Hyun Sik Kim, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
Journal of Microbiology.2022; 60(6): 576. CrossRef - Survival strategy of comammox bacteria in a wastewater nutrient removal system with sludge fermentation liquid as additional carbon source
Shaoyi Xu, Wenbo Chai, Rui Xiao, Barth F. Smets, Alejandro Palomo, Huijie Lu
Science of The Total Environment.2022; 802: 149862. CrossRef -
Hymenobacter armeniacus sp. nov. and Hymenobacter montanus sp. nov., two radiation-resistant bacteria from soil
Yuna Park, Yoonjee Chang, Myung Kyum Kim
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Hymenobacter telluris sp. nov., isolated from soil in South Korea
Tuvshinzaya Damdintogtokh, Yuna Park, Soohyun Maeng, Hye Jin Oh, Minji Bang, Young Koung Lee, Jaesung Oh, Jaewoo Bai, Myung Kyum Kim
Archives of Microbiology.2022;[Epub] CrossRef -
Ferruginibacter albus sp. nov., isolated from a mountain soil, and Mucilaginibacter robiniae sp. nov., isolated from a black locust flower, Robinia pseudoacacia
Miyoung Won, Hang-Yeon Weon, Jun Heo, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Beyond the ABCs—Discovery of Three New Plasmid Types in Rhodobacterales (RepQ, RepY, RepW)
Heike M. Freese, Victoria Ringel, Jörg Overmann, Jörn Petersen
Microorganisms.2022; 10(4): 738. CrossRef - Comparative Genomic Analyses of the Genus Photobacterium Illuminate Biosynthetic Gene Clusters Associated with Antagonism
Nyok-Sean Lau, Wooi Liang Heng, Noorizan Miswan, Nor Azura Azami, Go Furusawa
International Journal of Molecular Sciences.2022; 23(17): 9712. CrossRef - Comparative Genomic Analysis of Fusobacterium necrophorum Provides Insights into Conserved Virulence Genes
Prabha K. Bista, Deepti Pillai, Chayan Roy, Joy Scaria, Sanjeev K. Narayanan, Philip N. Rather
Microbiology Spectrum.2022;[Epub] CrossRef - Shewanella sp. T2.3D-1.1 a Novel Microorganism Sustaining the Iron Cycle in the Deep Subsurface of the Iberian Pyrite Belt
Guillermo Mateos, Adrián Martínez Bonilla, Sofía de Francisco de Polanco, José M. Martínez, Cristina Escudero, Nuria Rodríguez, Irene Sánchez-Andrea, Ricardo Amils
Microorganisms.2022; 10(8): 1585. CrossRef - Devosia rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members of the genus Devosia, isolated from the rhizosphere of rice plants
Geeta Chhetri, Inhyup Kim, Minchung Kang, Jiyoun Kim, Yoonseop So, Taegun Seo
Journal of Microbiology.2022; 60(1): 1. CrossRef - Nocardioides carbamazepini sp. nov., an ibuprofen degrader isolated from a biofilm bacterial community enriched on carbamazepine
Tibor Benedek, Márton Pápai, Kholood Gharieb, Anna Bedics, András Táncsics, Erika Tóth, Hussein Daood, Gergely Maróti, Roland Wirth, Ofir Menashe, Károly Bóka, Balázs Kriszt
Systematic and Applied Microbiology.2022; 45(4): 126339. CrossRef -
Agrilactobacillus fermenti sp. nov. isolated from fermented vegetable residue
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Mei-Hua Hung, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Genomic Insights into the Radiation-Resistant Capability of Sphingomonas qomolangmaensis S5-59T and Sphingomonas glaciei S8-45T, Two Novel Bacteria from the North Slope of Mount Everest
Yang Liu, Xiaowen Cui, Ruiqi Yang, Yiyang Zhang, Yeteng Xu, Guangxiu Liu, Binglin Zhang, Jinxiu Wang, Xinyue Wang, Wei Zhang, Tuo Chen, Gaosen Zhang
Microorganisms.2022; 10(10): 2037. CrossRef - In silico, in vitro and in vivo characterization of host-associated Latilactobacillus curvatus strains for potential probiotic applications in farmed Atlantic salmon (Salmo salar)
Hannah S. Cathers, Shrinivasrao P. Mane, Nilesh R. Tawari, Jayanth Balakuntla, Germán Plata, Madan Krishnamurthy, Alicia MacDonald, Marilyn Wolter, Niel Baxter, Julian Briones, Akshitha Nagireddy, Gregory Millman, Roberto E. Martin, Arvind Kumar, Dharanes
Scientific Reports.2022;[Epub] CrossRef - Rahnella sikkimica sp. nov., a novel cold-tolerant bacterium isolated from the glacier of Sikkim Himalaya with plant growth-promoting properties
Anil Kumar, Anne Le Flèche-Matéos, Rakshak Kumar, Fabienne Lomprez, Frédéric Fichenick, Dharam Singh, Patrick A. D. Grimont, Sanjay Kumar
Extremophiles.2022;[Epub] CrossRef - Hydrogenophaga crocea sp. nov. associated with cyanobacterial mat isolated from farmland mud
Vipool Thorat, Bhavesh Tiwarekar, Kiran Kirdat, Saurabhee Chavan, Shital Markad, Shivaji Sathe, Tushar Lodha, Amit Yadav
Archives of Microbiology.2022;[Epub] CrossRef - Genome mining revealed polyhydroxybutyrate biosynthesis by Ramlibacter agri sp. nov., isolated from agriculture soil in Korea
Ram Hari Dahal, Jungmin Kim, Dhiraj Kumar Chaudhary, Thi Tuyet Nhan Le, Dong-Uk Kim, Hyein Jang, Jaisoo Kim
Antonie van Leeuwenhoek.2022; 115(5): 563. CrossRef -
Aestuarium zhoushanense is a later heterotypic synonym of Marivivens donghaensis, and transfer of Paradonghicola geojensis to the genus Marivivens as Marivivens geojensis comb. nov
Luxuan Qu, Yating Li, Wanpeng Wang, Zongze Shao, Zheng Gao, Qiliang Lai
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Lysobacter chinensis sp. nov., a cellulose-degrading strain isolated from cow dung compost
Yuyue Liu, Liuyan Zhou, Xinping Yang, Pengbin Li, Jinping Dai, Yuqing Xie, Xiaowu Wang, Zhifang Wang, Zhanqiang Su, Lei Feng
Antonie van Leeuwenhoek.2022; 115(8): 1031. CrossRef -
Quadrisphaera setariae sp. nov., polyphosphate-accumulating bacterium occurring as tetrad or aggregate cocci and isolated from Setaria viridis
Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Yoonseop So, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Thauera sedimentorum sp. nov., Isolated from Coastal Sediment
Jihye Baek, Nattira Jaikwang, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
Current Microbiology.2022;[Epub] CrossRef - Description of Deefgea piscis sp. nov., and Deefgea tanakiae sp. nov., isolated from the gut of Korean indigenous fish
Do-Hun Gim, So-Yeon Lee, Jeong Eun Han, Jae-Yun Lee, Seo Min Kang, Jin-Woo Bae
Journal of Microbiology.2022; 60(11): 1061. CrossRef - Flavobacterium proteolyticum sp. nov., isolated from aquaculture water
Juan Du, Yang Liu, Tao Pei, Anzhang Li, Ming-Rong Deng, Honghui Zhu
Archives of Microbiology.2022;[Epub] CrossRef -
Paracoccus everestensis sp. nov., a novel bacterium with great antioxidant capacity isolated from the north slope of Mount Everest
Xiaowen Cui, Yang Liu, Yajie Xu, Tuo Chen, Songlin Zhang, Jinxiu Wang, Ruiqi Yang, Guangxiu Liu, Wei Zhang, Gaosen Zhang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - [Retracted] Assembly of 97 Novel Bacterial Genomes in the Microbial Community Affiliated with Polyvinyl Alcohol in Soil of Northern China
Jiaxing Liu, Xun Gu, Hui Li, Yu-Hang Zhang
BioMed Research International.2022;[Epub] CrossRef -
Comparative Genomics Reveals Genetic Diversity and Metabolic Potentials of the Genus
Qipengyuania
and Suggests Fifteen Novel Species
Yang Liu, Tao Pei, Juan Du, Qing Yao, Ming-Rong Deng, Honghui Zhu, Gaurav Sharma, Feng Cai, Xuewei Xu
Microbiology Spectrum.2022;[Epub] CrossRef -
Sagittula salina sp. nov., isolated from marine waste
Leila Satari, Esther Molina-Menor, Àngela Vidal-Verdú, Javier Pascual, Juli Peretó, Manuel Porcar
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Pseudophaeobacter flagellatus sp. nov., isolated from coastal water
Yong Guan, Yue Jiang, Young-Min Kim, Seung Yeob Yu, Seung-Hyeon Choi, Hanna Choe, Zhun Li, Mi-Kyung Lee
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Thalassococcus arenae sp. nov. isolated from sea sand
Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
Archives of Microbiology.2022;[Epub] CrossRef - Microaerobic enrichment of benzene-degrading bacteria and description of Ideonella benzenivorans sp. nov., capable of degrading benzene, toluene and ethylbenzene under microaerobic conditions
Anna Bedics, András Táncsics, Erika Tóth, Sinchan Banerjee, Péter Harkai, Balázs Kovács, Károly Bóka, Balázs Kriszt
Antonie van Leeuwenhoek.2022; 115(9): 1113. CrossRef - Hymenobacter lucidus sp. nov., and Hymenobacter nitidus sp. nov., isolated from soil
Hyejin Oh, Hyang Burm Lee, Myung Kyum Kim
Archives of Microbiology.2022;[Epub] CrossRef - Natronococcus pandeyae sp. nov., a Novel Haloarchaeon from Sambhar Salt Lake
Swapnil Kajale, Neelima Deshpande, Tushar Lodha, Yogesh Shouche, Avinash Sharma
Current Microbiology.2022;[Epub] CrossRef -
Parachryseolinea silvisoli gen. nov., sp. nov., isolated from forest soil, and reclassification of Chryseolinea flava as Pseudochryseolinea flava gen. nov., comb. nov.
Chunling Wang, Yingying Lv, Anzhang Li, Qing Yao, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Whole genome sequencing of the halophilic Halomonas qaidamensis XH36, a novel species strain with high ectoine production
Tiantian Zhang, Tianqi Cui, Yaning Cao, Yongzhen Li, Fenghui Li, Derui Zhu, Jiangwa Xing
Antonie van Leeuwenhoek.2022; 115(4): 545. CrossRef -
Draft Genome Sequence of Labrys okinawensis, Isolated from
Acaciella
sp. Nodules in Mexico
Belén Chávez-Ramírez, Violeta Larios-Serrato, Paulina Estrada-de los Santos, Leighton Pritchard
Microbiology Resource Announcements.2022;[Epub] CrossRef -
Sporosarcina jiandibaonis sp. nov., isolated from saline soil
Delong Kong, Zhanfeng Xia, Yan Gao, Yiqing Zhou, Xu Jiang, Piao Xu, Wei Guo, Zhiyong Ruan
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Niabella agricola sp. nov., isolated from paddy soil
Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Tzung-Han Lee, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Description of Corynebacterium poyangense sp. nov., isolated from the feces of the greater white-fronted geese (Anser albifrons)
Qian Liu, Guoying Fan, Kui Wu, Xiangning Bai, Xi Yang, Wentao Song, Shengen Chen, Yanwen Xiong, Haiying Chen
Journal of Microbiology.2022; 60(7): 668. CrossRef - Paludisphaera rhizosphaereae sp. nov., a new member of the family Isosphaeraceae, isolated from the rhizosphere soil of Erianthus ravennae
Khongsai L. Lhingjakim, Nandardhane Smita, Gaurav Kumar, Uppada Jagadeeshwari, Shabbir Ahamad, Chintalapati Sasikala, Chintalapati Venkata Ramana
Antonie van Leeuwenhoek.2022; 115(8): 1073. CrossRef -
Fibrella aquatilis sp. nov., Fibrella rubiginis sp. nov. and Fibrella forsythiae sp. nov., isolated from freshwater, rusty iron and forsythia flower
Heeyoung Kang, Haneul Kim, Seokhyeon Bae, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Corallococcus silvisoli sp. nov., a novel myxobacterium isolated from subtropical forest soil
Xian-Jiao Zhang, Guang-Da Feng, Yang Liu, Yang Zhou, Xiaoqin Deng, Qing Yao, Honghui Zhu
Archives of Microbiology.2022;[Epub] CrossRef -
Fundicoccus fermenti sp. nov., an indigo-reducing facultative anaerobic alkaliphile isolated from indigo fermentation liquor used for dyeing
Zhihao Tu, Helena de Fátima Silva Lopes, Isao Yumoto
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Lignin-Oxidizing Vibrios Involved in the Mineralization of Plant Detritus in the Continental Slope
Jianyang Li, Chunming Dong, Biswarup Sen, Qiliang Lai, Linfeng Gong, Guangyi Wang, Zongze Shao
SSRN Electronic Journal .2022;[Epub] CrossRef - Mapping Strengths and Weaknesses of Different Clustering Approaches to Deciphering Bacterial Chimerism
David J. Burks, Rajeev K. Azad
OMICS: A Journal of Integrative Biology.2022; 26(8): 422. CrossRef - Unraveling Nitrogen, Sulfur, and Carbon Metabolic Pathways and Microbial Community Transcriptional Responses to Substrate Deprivation and Toxicity Stresses in a Bioreactor Mimicking Anoxic Brackish Coastal Sediment Conditions
Paula Dalcin Martins, Maider J. Echeveste Medrano, Arslan Arshad, Julia M. Kurth, Heleen T. Ouboter, Huub J. M. Op den Camp, Mike S. M. Jetten, Cornelia U. Welte
Frontiers in Microbiology.2022;[Epub] CrossRef - Rhizobium setariae sp. nov., an Indole-3-Acetic Acid-Producing Bacterium Isolated from Green Foxtail, Setaria viridis
Minchung Kang, Taegun Seo
Current Microbiology.2022;[Epub] CrossRef - Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
Journal of Microbiology.2022; 60(9): 890. CrossRef - Paenibacillus arenosi sp. nov., a siderophore-producing bacterium isolated from coastal sediment
Jihye Baek, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
Archives of Microbiology.2022;[Epub] CrossRef -
Vagococcus allomyrinae sp. nov. and Enterococcus larvae sp. nov., isolated from larvae of Allomyrina dichotoma
Sung-Min Kim, Yeong-Sik Byeon, Hong Lim Yang, In Seop Kim, Soon Dong Lee
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Staphylococcus ratti sp. nov. Isolated from a Lab Rat
Vojtěch Kovařovic, Ivo Sedláček, Petr Petráš, Stanislava Králová, Ivana Mašlaňová, Pavel Švec, Meina Neumann-Schaal, Tibor Botka, Tereza Gelbíčová, Eva Staňková, Jiří Doškař, Roman Pantůček
Pathogens.2022; 11(1): 51. CrossRef -
Mucilaginibacter rivuli sp. nov., isolated from a water rivulet
Seokhyeon Bae, Heeyoung Kang, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
A Novel
Alteromonas
Phage Lineage with a Broad Host Range and Small Burst Size
Yahui Yang, Ruijie Ma, Chen Yu, Junlei Ye, Xiaowei Chen, Long Wang, Nianzhi Jiao, Rui Zhang, Wei-Hua Chen
Microbiology Spectrum.2022;[Epub] CrossRef -
Muricauda aurea sp. nov. and Muricauda profundi sp. nov., two marine bacteria isolated from deep sea sediment of Pacific Ocean
Sufang Zhao, Renju Liu, Qiliang Lai, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
So-Yeon Lee, Pil Soo Kim, Hojun Sung, Dong-Wook Hyun, Jin-Woo Bae
Journal of Microbiology.2022; 60(5): 469. CrossRef - Culturomics of Bacteria from Radon-Saturated Water of the World’s Oldest Radium Mine
Gabriela Kapinusova, Kunal Jani, Tereza Smrhova, Petr Pajer, Irena Jarosova, Jachym Suman, Michal Strejcek, Ondrej Uhlik, Jing Han
Microbiology Spectrum.2022;[Epub] CrossRef -
Pseudomonas germanica sp. nov., isolated from Iris germanica rhizomes
Kostadin Evgeniev Atanasov, David Miñana-Galbis, Julia Gallego, Annabel Serpico, Montserrat Bosch, Teresa Altabella, Albert Ferrer
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Cohnella herbarum sp. nov., isolated from wild grass fermentation broth
Miyoung Won, Shin Ae Lee, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Description of Prasinibacter corallicola gen. nov., sp. nov., a zeaxanthin-producing bacterium isolated from stony coral Porites lutea
Guanghua Wang, Jianfeng Liu, Yuanjin Li, Jin Li, Jixin Luo, Biao Chen, Zhiheng Liao, Hongfei Su, Jiayuan Liang, Kefu Yu
Antonie van Leeuwenhoek.2022; 115(7): 933. CrossRef - Phylogenomic analysis of a metagenome-assembled genome indicates a new taxon of an anoxygenic phototroph bacterium in the family Chromatiaceae and the proposal of “Candidatus Thioaporhodococcus” gen. nov
Bakshi Amulyasai, Rai Anusha, Chintalapati Sasikala, Chintalapati Venkata Ramana
Archives of Microbiology.2022;[Epub] CrossRef -
Mucilaginibacter aurantiaciroseus sp. nov. and Mucilaginibacter flavidus sp. nov., isolated from Renlongba glacier on the Tibetan Plateau
Lei-Lei Yang, Yu Pang, Hong-Can Liu, Yu-Hua Xin, Qing Liu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Aeromicrobium stalagmiti sp. nov., isolated from a lava cave
Yeong-Sik Byeon, Sung-Min Kim, Hong Lim Yang, In Seop Kim, Soon Dong Lee
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Halorubrum salinarum sp. nov., an extremely halophilic archaeon isolated from a saturated brine pond of a saltern
Ho Le Han, Reneelyn E. Danganan, Zhun Li, Na-Ri Shin, Reuel M. Bennett, Gina R. Dedeles, Song-Gun Kim
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Sulfuriroseicoccus oceanibius gen. nov., sp. nov., a representative of the phylum Verrucomicrobia with a special cytoplasmic membrane
Xi Feng, Qi-Yun Liang, Qi-Hang Zou, Meng-Qi Ye, Zong-Jun Du
Antonie van Leeuwenhoek.2022; 115(2): 337. CrossRef -
Sediminibacillus dalangtanensis sp. nov., a moderate halophile isolated from hypersaline sediments of the Qaidam Basin in Northwest China
Ting Huang, Qiliang Lai, Long Xiao, Linfeng Gong, Zongze Shao, Hongmei Wang, Yi Xu, Ricardo Amils, Cristina Escudero, José M. Martinez
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Croceicoccus hydrothermalis sp. nov., isolated from shallow-sea hydrothermal system off Kueishantao Island
Beihan Chen, Youting Ye, Dan Lin, Mu Zhang, Jia Sun, Kai Tang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Deciphering Genomes: Genetic Signatures of Plant-Associated Micromonospora
Raúl Riesco, Maite Ortúzar, José Manuel Fernández-Ábalos, Martha E. Trujillo
Frontiers in Plant Science.2022;[Epub] CrossRef - Erwinia phyllosphaerae sp. nov., a novel bacterium isolated from phyllosphere of pomelo (Citrus maxima)
Ming-Kai Pan, Guang-Da Feng, Qing Yao, Jiali Li, Chenjian Liu, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Capillimicrobium parvum gen. nov., sp. nov., a novel representative of Capillimicrobiaceae fam. nov. within the order Solirubrobacterales, isolated from a grassland soil
Selma Vieira, Katharina J. Huber, Alicia Geppert, Jacqueline Wolf, Meina Neumann-Schaal, Manja Luckner, Gerhard Wanner, Mathias Müsken, Jörg Overmann
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Salegentibacter lacus sp. nov. and Salegentibacter tibetensis sp. nov., isolated from hypersaline lakes on the Tibetan Plateau
Huibin Lu, Peixin Gao, Dorji Phurbu, Qinglong L. Wu, Peng Xing
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Sphingomonas cannabina sp. nov., isolated from Cannabis sativa L. ‘Cheungsam’
Doeun Jeon, Lingmin Jiang, Yuxin Peng, Jiyoon Seo, Zhun Li, Seung-Hwan Park, Rae-Dong Jeong, Soon Ju Park, Jae Cheol Jeong, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Ideonella alba sp. nov. and Ideonella aquatica sp. nov. isolated from an aquaculture farm
Juan Du, Yang Liu, Tao Pei, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Gottfriedia endophyticus sp. nov., a novel indole-acetic acid producing bacterium isolated from the roots of rice plant
Geeta Chhetri, Inhyup Kim, Taegun Seo
Antonie van Leeuwenhoek.2022; 115(7): 943. CrossRef - Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides
Lucelia Cabral, Gabriela F. Persinoti, Douglas A. A. Paixão, Marcele P. Martins, Mariana A. B. Morais, Mariana Chinaglia, Mariane N. Domingues, Mauricio L. Sforca, Renan A. S. Pirolla, Wesley C. Generoso, Clelton A. Santos, Lucas F. Maciel, Nicolas Terrap
Nature Communications.2022;[Epub] CrossRef - Aggregatimonas sangjinii gen. nov., sp. nov., a novel silver nanoparticle synthesizing bacterium belonging to the family Flavobacteriaceae
Dawoon Chung, Jaejoon Jung, Jaoon Young Hwan Kim, Kyung Woo Kim, Yong Min Kwon
Antonie van Leeuwenhoek.2022; 115(2): 325. CrossRef - Comparative genomic analyses of four novel Ramlibacter species and the cellulose-degrading properties of Ramlibacter cellulosilyticus sp. nov.
Minchung Kang, Geeta Chhetri, Inhyup Kim, Yoonseop So, Taegun Seo
Scientific Reports.2022;[Epub] CrossRef -
Cellulosimicrobium protaetiae sp. nov., isolated from the gut of the larva of Protaetia brevitarsis seulensis
Ho Le Han, Tra T. H. Nguyen, Zhun Li, Na-Ri Shin, Song-Gun Kim
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Prokaryotes of renowned Karlovy Vary (Carlsbad) thermal springs: phylogenetic and cultivation analysis
Tereza Smrhova, Kunal Jani, Petr Pajer, Gabriela Kapinusova, Tomas Vylita, Jachym Suman, Michal Strejcek, Ondrej Uhlik
Environmental Microbiome.2022;[Epub] CrossRef -
Draft Genome Sequences of the Kocuria subflava Type Strain KCTC 39547 and
Kocuria
sp. Strain JC486, a Newly Isolated Strain from a Wild Ass Sanctuary in Gujarat, India
Jagadeeshwari Uppada, Sasikala Chintalapati, Karthika K, Venkata Ramana Chintapati, J. Cameron Thrash
Microbiology Resource Announcements.2022;[Epub] CrossRef - Cellulomonas fulva sp. nov., isolated from oil-contaminated soil
Ram Hari Dahal, Jungmin Kim, Dong-Uk Kim, Ke Dong, Yongseok Hong, Dhiraj Kumar Chaudhary
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Hymenobacter piscis sp. nov., isolated from a fish pond
Shih-Yi Sheu, Che-Chia Yang, Soon-Wo Kwon, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Corynebacterium uberis sp. nov. frequently isolated from bovine mastitis
Sonja Kittl, Eveline Studer, Isabelle Brodard, Andreas Thomann, Jörg Jores
Systematic and Applied Microbiology.2022; 45(4): 126325. CrossRef -
Spiractinospora alimapuensis gen. nov., sp. nov., isolated from marine sediment of Valparaíso Bay (Chile) and proposal for reclassification of two species of the genus Nocardiopsis
Fernanda P. Claverías, Néstor Serna-Cardona, Andrés Cumsille, Leonardo Zamora-Leiva, Raúl Riesco, Eduardo Couve, Martha E. Trujillo, Beatriz Cámara
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Microvirga splendida sp. nov., bacteria isolated from soil
Yuna Park, Soohyun Maeng, Tuvshinzaya Damdintogtokh, Hyejin Oh, Minji Bang, Jaewoo Bai, Myung Kyum Kim
Antonie van Leeuwenhoek.2022; 115(6): 741. CrossRef - Genome analysis of Pseudomonas species reveals that Pseudomonas panacis Park et al. 2005 is a later heterotypic synonym of Pseudomonas marginalis (Brown 1918) Stevens 1925 (Approved Lists 1980)
Ritu Rani Archana Kujur, Sushanta Deb, Subrata K. Das
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Halomonas antri sp. nov., a carotenoid-producing bacterium isolated from surface seawater
Yoonseop So, Geeta Chhetri, Inhyup Kim, Minchung Kang, Jiyoun Kim, Byungjo Lee, Wonhee Jang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Parvicella tangerina gen. nov., sp. nov. (Parvicellaceae fam. nov., Flavobacteriales), first cultured representative of the marine clade UBA10066, and Lysobacter luteus sp. nov., from activated sludge of a seawater-processing wastewater treat
Teresa Lucena, Olga Sánchez, Isabel Sanz-Saez, Silvia G. Acinas, Laura Garrido, Jordi Mas, M. Carmen Macián, María A. Ruvira, David R. Arahal, María J. Pujalte
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Sphingomonas folii sp. nov., Sphingomonas citri sp. nov. and Sphingomonas citricola sp. nov., isolated from citrus phyllosphere
Guang-Da Feng, Jiali Li, Mingkai Pan, Xiaoqin Deng, Meng Chen, Qing Yao, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Frequent Occurrence and Metabolic Versatility of
Marinifilaceae
Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas
Jianyang Li, Chunming Dong, Qiliang Lai, Guangyi Wang, Zongze Shao, Thomas J. Sharpton
mSystems.2022;[Epub] CrossRef -
Tenebrionicola larvae gen. nov., sp. nov., isolated from larvae of mealworm Tenebrio molitor L., and a proposal to transfer Erwinia teleogrylli Liu et al. 2016 to a new genus Entomohabitans as Entomohabitans teleogrylli comb. nov.
Soon Dong Lee, Seong-Min Kim, Yeong-Sik Byeon, Hong Lim Yang, Soo Hong Chang, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Sessilibacter corallicola gen. nov., sp. nov., a sessile bacterium isolated from coral Porites lutea
Jianfeng Liu, Jin Li, Jixin Luo, Yuanjin Li, Zian Yang, Chengli Huang, Feilong Sun, Guanghua Wang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Moraxella tetraodonis sp. nov., isolated from freshwater pufferfish (Tetraodon cutcutia) skin
Lipika Das, Subrata K. Das
Archives of Microbiology.2022;[Epub] CrossRef -
Sulfurimonas marina sp. nov., an obligately chemolithoautotrophic, sulphur-oxidizing bacterium isolated from a deep-sea sediment sample from the South China Sea
Zhaodi Wang, Shasha Wang, Qiliang Lai, Shiping Wei, Lijing Jiang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Genome-based reclassification of Azospirillum brasilense Az39 as the type strain of Azospirillum argentinense sp. nov.
Natália dos Santos Ferreira, Anahí Coniglio, Mariana Puente, Fernando Hayashi Sant’Anna, Guillermo Maroniche, Julia García, Romina Molina, Sofia Nievas, Camila Gazolla Volpiano, Adriana Ambrosini, Luciane M. P. Passaglia, Raul O. Pedraza, Verônica Massena
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faecalibacterium gallinarum sp. nov.
Mitsuo Sakamoto, Naomi Sakurai, Hiroki Tanno, Takao Iino, Moriya Ohkuma, Akihito Endo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Bradyrhizobium altum sp. nov., Bradyrhizobium oropedii sp. nov. and Bradyrhizobium acaciae sp. nov. from South Africa show locally restricted and pantropical nodA phylogeographic patterns
Juanita R. Avontuur, Marike Palmer, Chrizelle W. Beukes, Wai Y. Chan, Taponeswa Tasiya, Elritha van Zyl, Martin P.A. Coetzee, Tomasz Stepkowski, Stephanus N. Venter, Emma T. Steenkamp
Molecular Phylogenetics and Evolution.2022; 167: 107338. CrossRef - Azospirillum tabaci sp. nov., a bacterium isolated from rhizosphere soil of Nicotiana tabacum L
Yan-Qing Duan, Xing-Kui Zhou, Neeli Habib, Shi-Qiang Gao, Li-Min Dong, Xiao-Fei Liu, Yang-Mei Shi, Wen-Jun Li, Gang Du
Archives of Microbiology.2022;[Epub] CrossRef - Cecal Microbial Hydrogen Cycling Potential Is Linked to Feed Efficiency Phenotypes in Chickens
Gustavo Antonio Ramírez, Jitendra Keshri, Isabella Vahrson, Arkadiy I. Garber, Mark E. Berrang, Nelson A. Cox, Fernando González-Cerón, Samuel E. Aggrey, Brian B. Oakley
Frontiers in Veterinary Science.2022;[Epub] CrossRef -
Enterococcus alishanensis sp. nov., a novel lactic acid bacterium isolated from fresh coffee beans
Jen-hao Chung, Misa Otoguro, Fujitoshi Yanagida, Hui-chung Wu, Yu-chung Chang, Yun-Shien Lee, Yi-sheng Chen
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Comparative Genomics of the Genus Pseudomonas Reveals Host- and Environment-Specific Evolution
Zaki Saati-Santamaría, Riccardo Baroncelli, Raúl Rivas, Paula García-Fraile, Olaya Rendueles Garcia
Microbiology Spectrum.2022;[Epub] CrossRef - Croceicoccus gelatinilyticus sp. nov., isolated from a tidal flat sediment
Tao Pei, Yang Liu, Juan Du, Kunpeng Huang, Ming-Rong Deng, Honghui Zhu
Archives of Microbiology.2022;[Epub] CrossRef - Shewanella jiangmenensis sp. nov., isolated from aquaculture water
Yingli Song, Anzhang Li, Shuaishuai Xu, Mingxia Zhang, Qing Yao, Lian Ma, Honghui Zhu
Archives of Microbiology.2022;[Epub] CrossRef - Mesonia aestuariivivens sp. nov., isolated from a tidal flat
Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
Archives of Microbiology.2022;[Epub] CrossRef - Chryseobacterium tagetis sp. nov., a plant growth promoting bacterium with an antimicrobial activity isolated from the roots of medicinal plant (Tagetes patula)
Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Yoonseop So, Taegun Seo
The Journal of Antibiotics.2022; 75(6): 312. CrossRef - Description ofPseudogemmobacter faecipullorumsp. nov., isolated from poultry manure
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Yu-Shan Tang, Chiu-Chung Young
FEMS Microbiology Letters.2022;[Epub] CrossRef -
Acetylenotrophic and Diazotrophic
Bradyrhizobium
sp. Strain I71 from TCE-Contaminated Soils
Denise M. Akob, John M. Sutton, Timothy J. Bushman, Shaun M. Baesman, Edina Klein, Yesha Shrestha, Robert Andrews, Janna L. Fierst, Max Kolton, Sara Gushgari-Doyle, Ronald S. Oremland, John L. Freeman, Jeremy D. Semrau
Applied and Environmental Microbiology.2022;[Epub] CrossRef - Definition of the Metagenomic Profile of Ocean Water Samples From the Gulf of Mexico Based on Comparison With Reference Samples From Sites Worldwide
Antonio Loza, Fernando García-Guevara, Lorenzo Segovia, Alejandra Escobar-Zepeda, Maria del Carmen Sanchez-Olmos, Enrique Merino, Alejandro Sanchez-Flores, Liliana Pardo-Lopez, Katy Juarez, Rosa-Maria Gutierrez-Rios
Frontiers in Microbiology.2022;[Epub] CrossRef - Marinobacterium arenosum sp. nov., isolated from a coastal sand
Yunjeong Lee, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
Archives of Microbiology.2022;[Epub] CrossRef -
Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn
Do-Yeon Kim, In-Chul Jeong, So-Yeon Lee, Yun-Seok Jeong, Jeong Eun Han, Euon Jung Tak, June-Young Lee, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Genomic characterization and production of antimicrobial lipopeptides by Bacillus velezensis P45 growing on feather by-products
Carolini Esmeriz da Rosa, Cristian Mauricio Barreto Pinilla, Paolo Stincone, Jamile Queiroz Pereira, Ana Paula Muterle Varela, Fabiana Quoos Mayer, Adriano Brandelli
Journal of Applied Microbiology.2022; 132(3): 2067. CrossRef - Subtercola endophyticus sp. nov., a cold-adapted bacterium isolated from Abies koreana
Lingmin Jiang, Yuxin Peng, Jiyoon Seo, Doeun Jeon, Mi Gyeong Jo, Ju Huck Lee, Jae Cheol Jeong, Cha Young Kim, Hyeong Cheol Park, Jiyoung Lee
Scientific Reports.2022;[Epub] CrossRef - Type IV pili trigger episymbiotic association of Saccharibacteria with its bacterial host
Bingliang Xie, Jian Wang, Yong Nie, Jing Tian, Zerui Wang, Dongwei Chen, Beiyu Hu, Xiao-Lei Wu, Wenbin Du
Proceedings of the National Academy of Sciences.2022;[Epub] CrossRef - Gymnodinialimonas ceratoperidinii gen. nov., sp. nov., isolated from rare marine dinoflagellate Ceratoperidinium margalefii
Yue Jiang, Yuxin Peng, Hyeon Ho Shin, Hyun Jung Kim, Ki-Hyun Kim, Lingmin Jiang, Jiyoung Lee, Zhun Li
Archives of Microbiology.2022;[Epub] CrossRef - Pufferfish (Tetraodon cutcutia) Sampled from a Freshwater River Serves as an Intermediate Reservoir of a Sucrose Nonfermenting Variant of Vibrio cholerae PS-4
Lipika Das, Sushanta Deb, Eiji Arakawa, Shinji Yamasaki, Subrata K. Das, Courtney J. Robinson
Microbiology Spectrum.2022;[Epub] CrossRef -
Deinococcus betulae sp. nov. and Deinococcus arboris sp. nov., novel bacteria isolated from bark of birch tree (Betula platyphylla)
Seokhyeon Bae, Heeyoung Kang, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Hi-C deconvolution of a textile dye–related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes
Ayixon Sánchez-Reyes, Luz Bretón-Deval, Hayley Mangelson, Ilse Salinas-Peralta, Alejandro Sanchez-Flores
International Microbiology.2022; 25(1): 99. CrossRef -
Thermal Endurance by a Hot-Spring-Dwelling Phylogenetic Relative of the Mesophilic
Paracoccus
Nibendu Mondal, Chayan Roy, Sumit Chatterjee, Jagannath Sarkar, Subhajit Dutta, Sabyasachi Bhattacharya, Ranadhir Chakraborty, Wriddhiman Ghosh, Jeffrey A. Gralnick
Microbiology Spectrum.2022;[Epub] CrossRef - Microbiota of the Pregnant Mouse: Characterization of the Bacterial Communities in the Oral Cavity, Lung, Intestine, and Vagina through Culture and DNA Sequencing
Jonathan M. Greenberg, Roberto Romero, Andrew D. Winters, Jose Galaz, Valeria Garcia-Flores, Marcia Arenas-Hernandez, Jonathan Panzer, Zachary Shaffer, David J. Kracht, Nardhy Gomez-Lopez, Kevin R. Theis, Jennifer M. Auchtung
Microbiology Spectrum.2022;[Epub] CrossRef -
Sphingomonas radiodurans sp. nov., a novel radiation-resistant bacterium isolated from the north slope of Mount Everest
Yang Liu, Tuo Chen, Xiaowen Cui, Yeteng Xu, Shixin Hu, Yidan Zhao, Wei Zhang, Guangxiu Liu, Gaosen Zhang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Enterovibrio paralichthyis sp. nov., isolated from the gut of an olive flounder Paralichthys olivaceus
Young-Ok Kim, In-Suk Park, Dong-Gyun Kim, Sooyeon Park, Sung Hoon Han, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Deep Learning Encoding for Rapid Sequence Identification on Microbiome Data
Jacob Borgman, Karen Stark, Jeremy Carson, Loren Hauser
Frontiers in Bioinformatics.2022;[Epub] CrossRef - Arthrobacter wenxiniae sp. nov., a novel plant growth-promoting rhizobacteria species harbouring a carotenoids biosynthetic gene cluster
Yu-chen Sun, Pengbo Sun, Jing Xue, Yunpeng Du, Hui Yan, Li-wei Wang, Xin-xin Yi, Jian-guang Sun, Xiuhai Zhang, Jun-lian Gao
Antonie van Leeuwenhoek.2022; 115(3): 353. CrossRef - Microvirga terricola sp. nov. and Microvirga solisilvae sp. nov, isolated from forest soil
Xianjiao Zhang, Guang-Da Feng, Xiangling Zhen, Yulian Zhang, Xiaoqin Deng, Honghui Zhu, Qing Yao
Archives of Microbiology.2022;[Epub] CrossRef -
Pararoseburia lenta gen. nov., sp. nov. isolated from human faeces
Rashidin Abdugheni, Yu-Jing Wang, Dan-Hua Li, Meng-Xuan Du, Chang Liu, Nan Zhou, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Six novel Micromonospora species associated with the phyllosphere and roots of leguminous plants: Micromonospora alfalfae sp. nov., Micromonospora cabrerizensis sp. nov., Micromonospora foliorum sp. nov., Micromonospora hortensis sp. nov., Micromonospora
Raúl Riesco, Maite Ortúzar, Brenda Román-Ponce, Fernando Sánchez-Juanes, José Mariano Igual, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Rothia santali sp. nov., endophytic bacteria isolated from sandalwood (Santalum album L.) seedling
Ngangyola Tuikhar, Kiran Kirdat, Gayatri Nair, S. Padma, Vipool Thorat, P. Swetha, Shivaji Sathe, R. Sundararaj, Amit Yadav
Archives of Microbiology.2022;[Epub] CrossRef -
Rhodococcus spelaei sp. nov., isolated from a cave, and proposals that Rhodococcus biphenylivorans is a later synonym of Rhodococcus pyridinivorans, Rhodococcus qingshengii and Rhodococcus baikonurensis are later synonyms of Rhodococcus eryth
Soon Dong Lee, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Sweet spheres: succession and CAZyme expression of marine bacterial communities colonizing a mix of alginate and pectin particles
Carina Bunse, Hanna Koch, Sven Breider, Meinhard Simon, Matthias Wietz
Environmental Microbiology.2021; 23(6): 3130. CrossRef -
Pareuzebyella sediminis gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae, isolated from a tidal flat sediment
Zhaobin Huang, Xiaomei Wei, Qiliang Lai, Shiyong Chen, Jianjun Yuan
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Description of Devosia faecipullorum sp. nov., harboring antibiotic- and toxic compound-resistant genes, isolated from poultry manure
Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Yu-Shan Tang, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleeper) and Siniperca scherzeri (leopard mandarin fish)
Dong-Wook Hyun, Yun-Seok Jeong, Jae-Yun Lee, Hojun Sung, So-Yeon Lee, Jee-Won Choi, Hyun Sik Kim, Pil Soo Kim, Jin-Woo Bae
Journal of Microbiology.2021; 59(6): 552. CrossRef -
Pseudomonas schmalbachii sp. nov., isolated from the gut of a millipede (Trigoniulus corallinus) from a coconut tree
Matan Shelomi, Wen-Ming Chen, Hsin-Kuang Chen, Hsin-Ying Lee, Chiu-Chung Young, Shih-Yao Lin, Shwu-Jen Liaw
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Fuscibacter oryzae gen. nov., sp. nov., a phosphate-solubilizing bacterium isolated from the rhizosphere of rice plant
Geeta Chhetri, Minchung Kang, Jiyoun Kim, Inhyup Kim, Yoonseop So, Taegun Seo
Antonie van Leeuwenhoek.2021; 114(9): 1453. CrossRef - Genome insight and description of antibiotic producing Massilia antibiotica sp. nov., isolated from oil-contaminated soil
Ram Hari Dahal, Dhiraj Kumar Chaudhary, Jaisoo Kim
Scientific Reports.2021;[Epub] CrossRef - Maritimibacter harenae sp. nov. and Sneathiella litorea sp. nov.: members of Alphaproteobacteria isolated from sea sand
Shehzad Abid Khan, Hye Su Jung, Hye Yoon Park, Che Ok Jeon
Antonie van Leeuwenhoek.2021; 114(6): 799. CrossRef -
Palleronia sediminis sp. nov. and Flavivirga algicola sp. nov., two marine bacteria isolated from offshore areas near Weihai
Xun-Ke Sun, Ya-Ning Zhang, Yu-Yao Jia, Yan-Lin Zhong, Guan-Jun Chen, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Paenarthrobacter sp. GOM3 Is a Novel Marine Species With Monoaromatic Degradation Relevance
Jaime Rosas-Díaz, Alejandra Escobar-Zepeda, Libertad Adaya, Jorge Rojas-Vargas, Diego Humberto Cuervo-Amaya, Ayixon Sánchez-Reyes, Liliana Pardo-López
Frontiers in Microbiology.2021;[Epub] CrossRef - Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax
M. Carmen Macián, Teresa Lucena, David R. Arahal, María A. Ruvira, Rosa Aznar, María J. Pujalte
Archives of Microbiology.2021; 203(4): 1293. CrossRef - Pseudoprevotella muciniphila gen. nov., sp. nov., a mucin-degrading bacterium attached to the bovine rumen epithelium
Sang Weon Na, Byung Hee Chun, Seok-Hyeon Beak, Shehzad Abid Khan, Md. Najmul Haque, Jae Sung Lee, Che Ok Jeon, Sang-Suk Lee, Myunggi Baik, Pankaj Kumar Arora
PLOS ONE.2021; 16(5): e0251791. CrossRef -
Nocardioides baculatus sp. nov., a novel actinomycete isolated from the rhizosphere of Tagetes patula
Geeta Chhetri, Inhyup Kim, Minchung Kang, Jiyoun Kim, Yoonseop So, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Phylogenomic Analyses of a Clade Within the Family Flavobacteriaceae Suggest Taxonomic Reassignments of Species of the Genera Algibacter, Hyunsoonleella, Jejuia, and Flavivirga, and the Proposal of Pseudalgibacter gen. nov. and Pseudalgibacter alginicilyt
Miao Li, Ling-Zhi Hou, Xing-Hao Xu, Xiao-Xiao Wang, Ming-Can Zheng, Yan-Jiao Zhang, Ang Liu
Current Microbiology.2021; 78(8): 3277. CrossRef - Description of antibiotic-producing novel bacteria Paraburkholderia antibiotica sp. nov. and Paraburkholderia polaris sp. nov.
Ram Hari Dahal, Jungmin Kim, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Thiomicrorhabdus sediminis sp. nov. and Thiomicrorhabdus xiamenensis sp. nov., novel sulfur-oxidizing bacteria isolated from coastal sediments and an emended description of the genus Thiomicrorhabdus
Xuewen Liu, Baoping Chen, Qiliang Lai, Zongze Shao, Lijing Jiang
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Sanguibacter suaedae sp. nov., isolated from the root of Suaeda aralocaspica in north-west PR China
Qin Ma, Rui-Feng Lei, Yu-Qian Li, Dilireba Abudourousuli, Zulihumaer Rouzi, Muyesaier Aosiman, Fang Liu, Yang-Yang Liu, Deng-Di An, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Algibacillus agarilyticus gen. nov., sp. nov., isolated from the surface of the red algae Gelidium amansii
Xue Meng, Ya-Qi Chang, Huan Wang, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
'Candidatus Phytoplasma sacchari’, a novel taxon - associated with Sugarcane Grassy Shoot (SCGS) disease
Kiran Kirdat, Bhavesh Tiwarekar, Vipool Thorat, Shivaji Sathe, Yogesh Shouche, Amit Yadav
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Bruguierivorax albus gen. nov. sp. nov. Isolated from Mangrove Sediment and Proposal of Bruguierivoracaceae fam. nov
Mi Li, Kai Liu, Yonghong Liu, Chenghai Gao, Xiangxi Yi
Current Microbiology.2021; 78(2): 856. CrossRef - Uliginosibacterium aquaticum sp. nov., Isolated from a Freshwater Lake
Jaeho Song, Mirae Kim, Miri S. Park, Yochan Joung, Ilnam Kang, Jang-Cheon Cho
Current Microbiology.2021; 78(9): 3381. CrossRef -
Nonlabens ponticola sp. nov., isolated from seawater and reclassification of Nonlabens sediminis as a later heterotypic synonym of Nonlabens tegetincola
Ye Lin Seo, Jaejoon Jung, Chi-une Song, Yong Min Kwon, Hye Su Jung, Seong-il Eyun, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Thermosipho ferrireducens sp.nov., an anaerobic thermophilic iron(III)-reducing bacterium isolated from a deep-sea hydrothermal sulfide deposits
Yao Chen, Yang He, Zongze Shao, Xiqiu Han, Danling Chen, Jian Yang, Xiang Zeng
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Peteryoungia gen. nov. with four new species combinations and description of Peteryoungia desertarenae sp. nov., and taxonomic revision of the genus Ciceribacter based on phylogenomics of Rhizobiaceae
Praveen Rahi, Mitesh Khairnar, Ashwini Hagir, Avinash Narayan, Kunal R. Jain, Datta Madamwar, Aabeejjeet Pansare, Yogesh Shouche
Archives of Microbiology.2021; 203(6): 3591. CrossRef -
Brevilactibacter coleopterorum sp. nov., isolated from the intestine of the dark diving beetle Hydrophilus acuminatus, and Weissella coleopterorum sp. nov., isolated from the intestine of the diving beetle Cybister lewisianus
Dong-Wook Hyun, June-Young Lee, Hojun Sung, Pil Soo Kim, Yun-Seok Jeong, Jae-Yun Lee, Ji-Hyun Yun, Jee-Won Choi, Jeong Eun Han, So-Yeon Lee, Euon Jung Tak, Hyun Sik Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Crassaminicella thermophila sp. nov., a moderately thermophilic bacterium isolated from a deep-sea hydrothermal vent chimney and emended description of the genus Crassaminicella
Xue-Gong Li, Jin Lin, Shi-Jie Bai, Jie Dai, Ze-Xi Jiao, Hong-Zhi Tang, Xiao-Qing Qi, Wei-Jia Zhang, Min Liu, Jian-Sheng Xu, Long-Fei Wu
International Journal of Systematic and Evolutionary Microbiology.2021;[Epub] CrossRef - Isoptericola sediminis sp. nov., Isolated from Chilika Lagoon
Dhanesh Kumar, Jagadeeshwari U., Krishnaiah A., Suresh G., Ch. Sasikala, Ch. Venkata Ramana
Current Microbiology.2021; 78(2): 848. CrossRef - “Candidatus Laterigemmans baculatus” gen. nov. sp. nov., the first representative of rod shaped planctomycetes with lateral budding in the family Pirellulaceae
Dhanesh Kumar, Gaurav Kumar, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana
Systematic and Applied Microbiology.2021; 44(2): 126188. CrossRef - Rahnella laticis sp. nov. and Rahnella contaminans sp. nov., and emended description of the genus Rahnella
Dabin Jeon, In Seop Kim, Soon Dong Lee
International Journal of Systematic and Evolutionary Microbiology.2021;[Epub] CrossRef - Proposal of Thermoactinomyces mirandus sp. nov., a filamentous, anaerobic bacterium isolated from a biogas plant
Mira Mutschlechner, Nina Lackner, Rudolf Markt, Willi Salvenmoser, Christopher A. Dunlap, Andreas O. Wagner
Antonie van Leeuwenhoek.2021; 114(1): 45. CrossRef - Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
Dimitra Sakoula, Hanna Koch, Jeroen Frank, Mike S M Jetten, Maartje A H J van Kessel, Sebastian Lücker
The ISME Journal.2021; 15(4): 1010. CrossRef -
Pontixanthobacter rizhaonensis sp. nov., a marine bacterium isolated from surface seawater of the Yellow Sea, and proposal of Pseudopontixanthobacter gen. nov., Pseudopontixanthobacter confluentis comb. nov. and Pseudopontixanthobacter sedimi
Ang Liu, Qing-Jie Xue, Shi-Gen Li, Yan-Jiao Zhang
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Burkholderia species in human infections in Mexico: Identification of B. cepacia, B. contaminans, B. multivorans, B. vietnamiensis,B. pseudomallei and a new Burkholderia species
Georgina Meza-Radilla, Violeta Larios-Serrato, Rigoberto Hernández-Castro, J. Antonio Ibarra, Paulina Estrada-de los Santos, Yunn-Hwen Gan
PLOS Neglected Tropical Diseases.2021; 15(6): e0009541. CrossRef -
Chryseobacterium caseinilyticum sp. nov., a casein hydrolyzing bacterium isolated from rice plant and emended description of Chryseobacterium piscicola
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Minchung Kang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Genome-Based Taxonomic Rearrangement of the Order Geobacterales Including the Description of Geomonas azotofigens sp. nov. and Geomonas diazotrophica sp. nov.
Zhenxing Xu, Yoko Masuda, Xueding Wang, Natsumi Ushijima, Yutaka Shiratori, Keishi Senoo, Hideomi Itoh
Frontiers in Microbiology.2021;[Epub] CrossRef - Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds
So-Yeon Lee, Hojun Sung, Pil Soo Kim, Hyun Sik Kim, Jae-Yun Lee, June-Young Lee, Yun-Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong-Wook Hyun, Jin-Woo Bae
Journal of Microbiology.2021; 59(11): 978. CrossRef - CAZymes in Maribacter dokdonensis 62–1 From the Patagonian Shelf: Genomics and Physiology Compared to Related Flavobacteria and a Co-occurring Alteromonas Strain
Laura A. Wolter, Maximilian Mitulla, Jovan Kalem, Rolf Daniel, Meinhard Simon, Matthias Wietz
Frontiers in Microbiology.2021;[Epub] CrossRef - Gephyromycinifex aptenodytis gen. nov., sp. nov., isolated from gut of Antarctic emperor penguin Aptenodytes forsteri
Wen-Zhuo Zhu, Ya-Ming Ge, Hui-Min Gao, Jun Dai, Xiao-Ling Zhang, Qiao Yang
Antonie van Leeuwenhoek.2021; 114(12): 2003. CrossRef -
Roseibium litorale sp. nov., isolated from a tidal flat sediment and proposal for the reclassification of Labrenzia polysiphoniae as Roseibium polysiphoniae comb. nov.
Yang Liu, Tao Pei, Juan Du, Meijie Chao, Ming-Rong Deng, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments
Paula Dalcin Martins, Anniek de Jong, Wytze K. Lenstra, Niels A. G. M. van Helmond, Caroline P. Slomp, Mike S. M. Jetten, Cornelia U. Welte, Olivia Rasigraf
MicrobiologyOpen.2021;[Epub] CrossRef - Description of Acinetobacter kanungonis sp. nov., based on phylogenomic analysis
Lipika Das, Sushanta Deb, Subrata K. Das
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Inhella proteolytica sp. nov. and Inhella gelatinilytica sp. nov., two novel species of the genus Inhella isolated from aquaculture water
Yang Liu, Tao Pei, Juan Du, Ming-Rong Deng, Honghui Zhu
Archives of Microbiology.2021; 203(6): 3191. CrossRef -
Variimorphobacter saccharofermentans gen. nov., sp. nov., a new member of the family Lachnospiraceae, isolated from a maize-fed biogas fermenter
Regina Rettenmaier, Nils Thieme, Johanna Streubel, Luca Di Bello, Marie-Louise Kowollik, Liren Huang, Irena Maus, Andreas Klingl, Wolfgang Liebl, Vladimir V. Zverlov
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Crateriforma spongiae sp. nov., isolated from a marine sponge and emended description of the genus “Crateriforma”
Gaurav Kumar, Dhanesh Kumar, U. Jagadeeshwari, P. K. Sreya, A. Shabbir, Ch. Sasikala, Ch. V. Ramana
Antonie van Leeuwenhoek.2021; 114(4): 341. CrossRef - Characterization of Sulfurimonas hydrogeniphila sp. nov., a Novel Bacterium Predominant in Deep-Sea Hydrothermal Vents and Comparative Genomic Analyses of the Genus Sulfurimonas
Shasha Wang, Lijing Jiang, Qitao Hu, Liang Cui, Bitong Zhu, Xiaoteng Fu, Qiliang Lai, Zongze Shao, Suping Yang
Frontiers in Microbiology.2021;[Epub] CrossRef -
Elizabethkingia argenteiflava sp. nov., isolated from the pod of soybean, Glycine max
Jun-Hee Hwang, Jihyeon Kim, Jae-heon Kim, SangJoon Mo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Clostridium fessum sp. nov., isolated from human faeces
Boram Seo, Kyungchan Jeon, Inwoo Baek, Yung Mi Lee, Kiwoon Baek, GwangPyo Ko
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - A sulfate-reducing bacterial genus, Desulfosediminicola gen. nov., comprising two novel species cultivated from tidal-flat sediments
Jaeho Song, Juchan Hwang, Ilnam Kang, Jang-Cheon Cho
Scientific Reports.2021;[Epub] CrossRef - Hyphomicrobium album sp. nov., isolated from mountain soil and emended description of genus Hyphomicrobium
Qing Xu, Yuxiao Zhang, Xing Wang, Gejiao Wang
Archives of Microbiology.2021; 203(10): 5931. CrossRef -
Bowmanella yangjiangensis sp. nov. and Amphritea pacifica sp. nov., isolated from mariculture fishponds in China
Zhipeng Cai, Huibin Lu, Youfeng Qian, Letian Chen, Meiying Xu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Dyella telluris sp. nov. and Dyella acidiphila sp. nov., isolated from forest soil of Dinghushan Biosphere Reserve, China
Tao Huang, Jia-cheng Fu, Shuo-han Dong, Qiu-mei Zhang, Ting-ting Wu, Li-hong Qiu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Noviherbaspirillum pedocola sp. nov., isolated from oil-contaminated experimental soil
Dhiraj Kumar Chaudhary, Ram Hari Dahal, Yongseok Hong
Archives of Microbiology.2021; 203(6): 3071. CrossRef - Reclassification of Facklamia ignava, Facklamia sourekii and Facklamia tabacinasalis as Falseniella ignava gen. nov., comb. nov., Hutsoniella sourekii gen. nov., comb. nov., and Ruoffia tabacinasalis gen. nov., comb. nov., and description of Ruoffia halot
Rashmi Fotedar, Krithivasan Sankaranarayanan, Matthew E. Caldwell, Aisha Zeyara, Amina Al Malki, Ridhima Kaul, Hamad Al Shamari, Mohammad Ali, Masoud Al Marri, Paul A. Lawson
Antonie van Leeuwenhoek.2021; 114(8): 1181. CrossRef - Reconstructing Draft Genomes Using Genome Resolved Metagenomics Reveal Arsenic Metabolizing Genes and Secondary Metabolites in Fresh Water Lake in Eastern India
Samrat Ghosh, Aditya Narayan Sarangi, Mayuri Mukherjee, Deeksha Singh, Madduluri Madhavi, Sucheta Tripathy
Bioinformatics and Biology Insights.2021;[Epub] CrossRef - Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Plinio S. Vieira, Isabela M. Bonfim, Evandro A. Araujo, Ricardo R. Melo, Augusto R. Lima, Melissa R. Fessel, Douglas A. A. Paixão, Gabriela F. Persinoti, Silvana A. Rocco, Tatiani B. Lima, Renan A. S. Pirolla, Mariana A. B. Morais, Jessica B. L. Correa, L
Nature Communications.2021;[Epub] CrossRef - Mesobacillus aurantius sp. nov., isolated from an orange-colored pond near a solar saltern
Anusha Rai, N. Smita, A. Shabbir, U. Jagadeeshwari, T. Keertana, Ch. Sasikala, Ch. V. Ramana
Archives of Microbiology.2021; 203(4): 1499. CrossRef -
Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis t
Shan Shan Qi, Margo Cnockaert, Aurélien Carlier, Peter A. Vandamme
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Marinobacter orientalis sp. nov., a thiosulfate-oxidizing bacterium isolated from a marine solar saltern
Feng-Bai Lian, Xu-Yang Chen, Shan Jiang, Guang-Yu Li, Zong-Jun Du
Antonie van Leeuwenhoek.2021; 114(6): 765. CrossRef - Cold-Active Shewanella glacialimarina TZS-4T nov. Features a Temperature-Dependent Fatty Acid Profile and Putative Sialic Acid Metabolism
Muhammad Suleman Qasim, Mirka Lampi, Minna-Maria K. Heinonen, Berta Garrido-Zabala, Dennis H. Bamford, Reijo Käkelä, Elina Roine, Leif Peter Sarin
Frontiers in Microbiology.2021;[Epub] CrossRef - Descriptions of Roseiconus nitratireducens gen. nov. sp. nov. and Roseiconus lacunae sp. nov.
Dhanesh Kumar, Gaurav Kumar, Jagadeeshwari Uppada, Shabbir Ahmed, Chintalapati Sasikala, Chintalapati Venkata Ramana
Archives of Microbiology.2021; 203(2): 741. CrossRef - Comparative Genome Analysis of Bacillus amyloliquefaciens Focusing on Phylogenomics, Functional Traits, and Prevalence of Antimicrobial and Virulence Genes
Hualin Liu, Vimalkumar Prajapati, Shobha Prajapati, Harsh Bais, Jianguo Lu
Frontiers in Genetics.2021;[Epub] CrossRef - Taibaiella lutea sp. nov., Isolated from Ubiquitous Weedy Grass
Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Minchung Kang, Taegun Seo
Current Microbiology.2021; 78(7): 2799. CrossRef - Marinobacter shengliensis subsp. alexandrii Subsp. Nov., Isolated from Cultivable Phycosphere Microbiota of Highly Toxic Dinoflagellate Alexandrium catenella LZT09 and Description of Marinobacter shengliensis Subsp. shengliensis Subsp. Nov
Xi Yang, Rong Xiang, Nurhezreen Md Iqbal, Yu-Han Duan, Xiao-Ai Zhang, Lei Wang, Lin-Zeng Yu, Jia-Zhou Li, Ming-Fei Sun, Qiao Yang, Chun-Tian Zheng, Shen-Quan Liao
Current Microbiology.2021; 78(4): 1648. CrossRef - Assessment of Erythrobacter Species Diversity through Pan-Genome Analysis with Newly Isolated Erythrobacter sp. 3-20A1M
Sang-Hyeok Cho, Yujin Jeong, Eunju Lee, So-Ra Ko, Chi-Yong Ahn, Hee-Mock Oh, Byung-Kwan Cho, Suhyung Cho
Journal of Microbiology and Biotechnology.2021; 31(4): 601. CrossRef - Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera
Anusha Rai, Uppada Jagadeeshwari, Gupta Deepshikha, Nandardhane Smita, Chintalapati Sasikala, Chintalapati Venkata Ramana
Frontiers in Microbiology.2021;[Epub] CrossRef - Zafaria cholistanensis gen. nov. sp. nov., a moderately thermotolerant and halotolerant actinobacterium isolated from Cholistan desert soil of Pakistan
Arshia Amin, Iftikhar Ahmed, Nauman Khalid, Peter Schumann, Hans-Jürgen Busse, Inam Ullah Khan, Ahmad Ali, Shuai Li, Wen-Jun Li
Archives of Microbiology.2021; 203(4): 1717. CrossRef -
Sphingomonas sabuli sp. nov., a carotenoid-producing bacterium isolated from beach sand
Minchung Kang, Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Gut microbiome drives individual memory variation in bumblebees
Li Li, Cwyn Solvi, Feng Zhang, Zhaoyang Qi, Lars Chittka, Wei Zhao
Nature Communications.2021;[Epub] CrossRef - Qipengyuania soli sp. nov., Isolated from Mangrove Soil
Yang Liu, Tao Pei, Ming-Rong Deng, Honghui Zhu
Current Microbiology.2021; 78(7): 2806. CrossRef - Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria
Fuquan Xie, Siwen Niu, Xihuang Lin, Shengxiang Pei, Li Jiang, Yun Tian, Gaiyun Zhang
Journal of Microbiology.2021; 59(10): 886. CrossRef -
Arthrobacter cheniae and Arthrobacter frigidicola sp. nov., isolated from a glacier
Lei-Lei Yang, Hong-Can Liu, Qing Liu, Yu-Hua Xin
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Stappia albiluteola sp. nov., isolated from marine sediment
Shan Jiang, You-Yang Sun, Feng-Bai Lian, Xiao-Kui Zhang, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Flagellatimonas centrodinii gen. nov., sp. nov., a novel member of the family Nevskiaceae isolated from toxin-producing dinoflagellate Centrodinium punctatum
Yue Jiang, Lingmin Jiang, Yuxin Peng, Ki-Hyun Kim, Hyeon Ho Shin, Young-Min Kim, Jiyoung Lee, Zhun Li
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces
Mitsuo Sakamoto, Nao Ikeyama, Masahiro Yuki, Takumi Murakami, Hiroshi Mori, Takao Iino, Moriya Ohkuma
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Anaerosporobacter faecicola sp. nov. isolated from faeces of Korean cow
Seung-Hyeon Choi, Jam-Eon Park, Ji Young Choi, Ji-Sun Kim, Se Won Kang, Jiyoung Lee, Mi-Kyung Lee, Jung-Sook Lee, Ju Huck Lee, Hyunjung Jung, Tai-Young Hur, Hyeun Bum Kim, Ju-Hoon Lee, Jae-Kyung Kim, Seung-Hwan Park
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Marixanthomonas spongiae sp. nov., isolated from marine sponge
Lingping Zhuang, Haiyue Pang, Li Xu, Dan Chen
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera
Amaraja Joshi, Sonia Thite, Prachi Karodi, Neetha Joseph, Tushar Lodha
Frontiers in Microbiology.2021;[Epub] CrossRef -
Aliidiomarina indica sp. nov., isolated from deep seawater
Lei Song, Hongcan Liu, Ying Huang, Xin Dai, Yuguang Zhou
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - First description outside Europe of the emergent pathogen Vibrio europaeus in shellfish aquaculture
Rodrigo Rojas, Andrés Blanco-Hortas, Hannah Kehlet-Delgado, Alberto Lema, Claudio D. Miranda, Jaime Romero, Paulino Martínez, Juan L. Barja, Javier Dubert
Journal of Invertebrate Pathology.2021; 180: 107542. CrossRef -
Chryseoglobus indicus sp. nov., isolated from deep sea water
Shengxiang Pei, Fuquan Xie, Wenjing Wang, Shuang Zhang, Gaiyun Zhang
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Sphingosinicella flava sp. nov., indole acetic acid producing bacteria isolated from maize field soil
Geeta Chhetri, Minchung Kang, Jiyoun Kim, Inhyup Kim, Yoonseop So, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Duganella aceris sp. nov., isolated from tree sap and proposal to transfer of Rugamonas aquatica and Rugamonas rivuli to the genus Duganella as Duganella aquatica comb. nov., with the emended description of the genus Rugamonas
Dabin Jeon, In Seop Kim, Hanna Choe, Ji-Sun Kim, Soon Dong Lee
Archives of Microbiology.2021; 203(6): 2843. CrossRef - Hymenobacter puniceus sp. nov., radiation resistant bacteria isolated from soil in South Korea
Yuna Park, Soohyun Maeng, Tuvshinzaya Damdintogtokh, Minji Bang, Hyejin Oh, Sathiyaraj Srinivasan, Myung Kyum Kim
Antonie van Leeuwenhoek.2021; 114(10): 1647. CrossRef -
Tessaracoccus coleopterorum sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus
Dong-Wook Hyun, Hojun Sung, Pil Soo Kim, Jae-Yun Lee, Yun-Seok Jeong, Ji-Hyun Yun, Jee-Won Choi, Jeong Eun Han, So-Yeon Lee, Euon Jung Tak, June-Young Lee, Hyun Sik Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Limnohabitans radicicola sp. nov., a slow-growing bacterium isolated from rhizosphere of rice plant and emended description of the genus Limnohabitans
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Minchung Kang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Distribution and Diversity of Nisin Producing LAB in Fermented Food
Basista Rabina Sharma, Dharana Jayant, Kumari Rajshee, Yashika Singh, Prakash M. Halami
Current Microbiology.2021; 78(9): 3430. CrossRef - Chryseobacterium cheonjiense sp. nov., isolated from forest soil
Dhiraj Kumar Chaudhary, Ram Hari Dahal, Dong-Uk Kim, Jaisoo Kim
Archives of Microbiology.2021; 203(2): 725. CrossRef -
Undibacterium baiyunense sp. nov., Undibacterium curvum sp. nov., Undibacterium fentianense sp. nov., Undibacterium flavidum sp. nov., Undibacterium griseum sp. nov., Undibacterium hunanense sp. nov., Undibacterium luofuense sp. nov., Undibac
Huibin Lu, Fei Liu, Tongchu Deng, Meiying Xu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Flavobacterium franklandianum sp. nov. and Flavobacterium gawalongense sp. nov., isolated from glaciers on the Tibetan Plateau
Qing Liu, Hong-Can Liu, Lei-Lei Yang, Yu-Hua Xin
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Sediminihaliea albiluteola gen. nov., sp. nov., a new member of the family Halieaceae, isolated from marine sediment
Shan Jiang, Feng-Bai Lian, You-Yang Sun, Xiao-Kui Zhang, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Fusibacter ferrireducens sp. nov., an anaerobic, Fe(Ⅲ)- and sulphur-reducing bacterium isolated from mangrove sediment
Donghua Qiu, Xiang Zeng, Lingyu Zeng, Guangyu Li, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Geothermobacter hydrogeniphilus sp. nov., a mesophilic, iron(III)-reducing bacterium from seafloor/subseafloor environments in the Pacific Ocean, and emended description of the genus Geothermobacter
Ileana Pérez-Rodríguez, Jessica K. Choi, Karla Abuyen, Madeline Tyler, Cynthia Ronkowski, Eric Romero, Anthony Trujillo, Jason Tremblay, Isabella Viney, Pratixaben Savalia, Jan P. Amend
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Oryzicola mucosus gen. nov., sp. nov., a novel slime producing bacterium belonging to the family Phyllobacteriaceae isolated from the rhizosphere of rice plants
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Minchung Kang, Yoonseop So, Taegun Seo
Antonie van Leeuwenhoek.2021; 114(11): 1925. CrossRef -
Ostreibacterium oceani gen. nov., sp. nov., isolated from oyster, and description of Ostreibacteriaceae fam. nov.
Chao-Nan Wang, Feng-Qing Wang, Yuan Liu, Ming-Yi Wang, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Salegentibacter maritimus sp. nov., isolated from marine coastal sediment
Feng-Bai Lian, Shan Jiang, Ke-Lei Zhu, Dan-Dan Shang, Jing Zhang, Zong-Jun Du
Systematic and Applied Microbiology.2021; 44(3): 126209. CrossRef -
Solimonas marina sp. nov., isolated from deep seawater of the Pacific Ocean
Xiupian Liu, Qiliang Lai, Fengqin Sun, Yaping Du, Yingbao Gai, Guangyu Li, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Phylo-taxogenomics of the genus Tautonia with descriptions of Tautonia marina sp. nov., Tautonia rosea sp. nov., and emended description of the genus
Kumar Gaurav, Dhanesh Kumar, U. Jagadeeshwari, A. Shabbir, Ch. Sasikala, Ch.V. Ramana
Systematic and Applied Microbiology.2021; 44(4): 126229. CrossRef - Reclassification of Algibacter wandonensis as a Later Heterotypic Synonym of Algibacter lectus Based on Whole-Genome Sequence Analysis
Ang Liu, Hui Wang, Yuan-Yuan Yang, Qing-Jie Xue, Xiu-Zhen Li
Current Microbiology.2021; 78(3): 1034. CrossRef -
Vibrio ziniensis sp. nov., isolated from mangrove sediments
Jie Wu, Wu Qu, Qiliang Lai, Shengxiang Pei, Tianyou Zhang, Yan Zhuang, Zhuhua Chan, Runying Zeng
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Parasphingopyxis marina sp. nov. isolated from coastal seawater
Soo-Yeon Choi, Ji-Sung Oh, Dong-Hyun Roh
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Kushneria phosphatilytica sp. nov., a phosphate-solubilizing bacterium isolated from a solar saltern
Guang-Xun Du, Ling-Yun Qu, Xu-Guang Hong, Cheng-Hua Li, De-Wen Ding, Ping Gao, Qin-Zeng Xu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
Zaki Saati-Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García-Fraile
Biology.2021; 10(8): 782. CrossRef - Marinobacter alexandrii sp. nov., a novel yellow-pigmented and algae growth-promoting bacterium isolated from marine phycosphere microbiota
Qiao Yang, Qi Feng, Bao-ping Zhang, Jia-jun Gao, Zhi Sheng, Qi-ping Xue, Xiao-ling Zhang
Antonie van Leeuwenhoek.2021; 114(6): 709. CrossRef - Multi-Omics Characterization of Host-Derived Bacillus spp. Probiotics for Improved Growth Performance in Poultry
Dwi Susanti, Alyssa Volland, Nilesh Tawari, Nielson Baxter, Dharanesh Gangaiah, Germán Plata, Akshitha Nagireddy, Troy Hawkins, Shrinivasrao P. Mane, Arvind Kumar
Frontiers in Microbiology.2021;[Epub] CrossRef -
Salibaculum halophilum gen. nov., sp. nov. and Salibaculum griseiflavum sp. nov., in the family Rhodobacteraceae
Ke-Lei Zhu, Xiao-Qun Wang, Tian-Shu Zhang, Dan-Dan Shang, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Aquabacterium terrae sp. nov., isolated from soil
Ram Hari Dahal, Ji Yeon Han, Hyosun Lee, Dhiraj Kumar Chaudhary, Dong-Uk Kim
Archives of Microbiology.2021; 203(6): 3183. CrossRef - Safety Assessment of Lactiplantibacillus (formerly Lactobacillus) plantarum Q180
Yoo Jin Kwon, Byung Hee Chun, Hye Su Jung, Jaeryang Chu, Hyunchae Joung, Sung Yurb Park, Byoung Kook Kim, Che Ok Jeon
Journal of Microbiology and Biotechnology.2021; 31(10): 1420. CrossRef -
Collimonas silvisoli sp. nov. and Collimonas humicola sp. nov., two novel species isolated from forest soil
Jiali Li, Mingkai Pan, Xianjiao Zhang, Yang Zhou, Guang-Da Feng, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Flavobacterium tagetis sp. nov., a novel urea-hydrolysing bacterium isolated from the roots of Tagetes patula
Geeta Chhetri, Inhyup Kim, Minchung Kang, Jiyoun Kim, Yoonseop So, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Croceicoccus bisphenolivorans sp. nov., a bisphenol A-degrading bacterium isolated from seawater
Jiangwei Li, Anyi Hu, Min Lv, Chang-Ping Yu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Vineibacter terrae gen. nov., sp. nov., an ammonium-assimilating and nitrate-reducing bacterium isolated from vineyard soil
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Geomesophilobacter sediminis gen. nov., sp. nov., Geomonas propionica sp. nov. and Geomonas anaerohicana sp. nov., three novel members in the family Geobacterecace isolated from river sediment and paddy soil
Zhengcheng Zhang, Zhenxing Xu, Yoko Masuda, Xueding Wang, Natsumi Ushijima, Yutaka Shiratori, Keishi Senoo, Hideomi Itoh
Systematic and Applied Microbiology.2021; 44(5): 126233. CrossRef - Rouxiella aceris sp. nov., isolated from tree sap and the emended description of the genus Rouxiella
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Antonie van Leeuwenhoek.2021; 114(7): 1013. CrossRef -
Pseudomarimonas arenosa gen. nov., sp. nov. isolated from marine sand
Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Chitinophaga fulva sp. nov., isolated from forest soil
Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Horizontal Gene Transfer of Genes Encoding Copper-Containing Membrane-Bound Monooxygenase (CuMMO) and Soluble Di-iron Monooxygenase (SDIMO) in Ethane- and Propane-Oxidizing
Rhodococcus
Bacteria
Bin Zou, Ying Huang, Pan-Pan Zhang, Xiao-Ming Ding, Huub J. M. Op den Camp, Zhe-Xue Quan, Alfons J. M. Stams
Applied and Environmental Microbiology.2021;[Epub] CrossRef -
Arachidicoccus soli sp. nov., a bacterium isolated from soil
Shin Ae Lee, Tae-Wan Kim, Mee-Kyung Sang, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Quantitative Real-Time PCR Assay for the Detection of Pectobacterium parmentieri, a Causal Agent of Potato Soft Rot
Anna A. Lukianova, Peter V. Evseev, Alexander A. Stakheev, Irina B. Kotova, Sergey K. Zavriev, Alexander N. Ignatov, Konstantin A. Miroshnikov
Plants.2021; 10(9): 1880. CrossRef - Phylogenomic Framework for Taxonomic Delineation of Paracoccus spp. and Exploration of Core-Pan Genome
Akshita Puri, Abhay Bajaj, Sukanya Lal, Yogendra Singh, Rup Lal
Indian Journal of Microbiology.2021; 61(2): 180. CrossRef - Echinicola arenosa sp. nov., isolated from marine sand
Jihye Baek, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
Archives of Microbiology.2021; 203(9): 5675. CrossRef - Cold-shock gene cspC in the genome of Massilia polaris sp. nov. revealed cold-adaptation
Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
Antonie van Leeuwenhoek.2021; 114(8): 1275. CrossRef - Complete genome sequence of Streptomyces sp. HSG2 from rhizosphere soil of mangrove in Qingmei Gang, Sanya
Shengxiang Pei, Siwen Niu, Fuquan Xie, Shuang Zhang, Wenjing Wang, Gaiyun Zhang
Archives of Microbiology.2021; 203(6): 3519. CrossRef - Martelella alba sp. nov., isolated from mangrove rhizosphere soil within the Beibu Gulf
Mi Li, Chenghai Gao, Yuyao Feng, Kai Liu, Pei Cao, Yonghong Liu, Xiangxi Yi
Archives of Microbiology.2021; 203(4): 1779. CrossRef -
Photobacterium arenosum sp. nov., isolated from marine sediment sand
Veeraya Weerawongwiwat, Seokmin Yoon, Jong-Hwa Kim, Jung-Hoon Yoon, Jung Sook Lee, Ampaitip Sukhoom, Wonyong Kim
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Oricola thermophila sp. nov., a marine bacterium isolated from tidal flat sediment and emended description of the genus Oricola Hameed et al. 2015
Sung-Hyun Yang, Mi-Jeong Park, Kae Kyoung Kwon
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Zeimonas arvi gen. nov., sp. nov., of the family Burkholderiaceae, harboring biphenyl- and phenolic acid-metabolizing genes, isolated from a long-term ecological research field
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
Antonie van Leeuwenhoek.2021; 114(12): 2101. CrossRef -
Chitinilyticum piscinae sp. nov., isolated from aquaculture water
Tao Pei, Juan Du, Yang Liu, Ming-Rong Deng, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Usitatibacter rugosus gen. nov., sp. nov. and Usitatibacter palustris sp. nov., novel members of Usitatibacteraceae fam. nov. within the order Nitrosomonadales isolated from soil
Selma Vieira, Katharina J. Huber, Meina Neumann-Schaal, Alicia Geppert, Manja Luckner, Gerhard Wanner, Jörg Overmann
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Caenimonas soli sp. nov., isolated from soil
Ram Hari Dahal, Hyosun Lee, Dhiraj Kumar Chaudhary, Dae-Young Kim, Jigwan Son, Jaisoo Kim, Jong-Ok Ka, Dong-Uk Kim
Archives of Microbiology.2021; 203(3): 1123. CrossRef - Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces
Mitsuo Sakamoto, Nao Ikeyama, Atsushi Toyoda, Takumi Murakami, Hiroshi Mori, Sho Morohoshi, Tadao Kunihiro, Takao Iino, Moriya Ohkuma
Microbiology and Immunology.2021; 65(6): 245. CrossRef -
Mesobacillus harenae sp. nov., isolated from the sandy soil of a cold desert
Gaosen Zhang, Ruiqi Yang, Tuo Chen, Binglin Zhang, Hui Yang, Xiukun Wu, Haining Gao, Wei Zhang, Guangxiu Liu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Pedobacter riviphilus sp. nov., isolated from stream sediment
Hong Sik Im, Yochan Joung, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Paraliobacillus salinarum sp. nov., isolated from saline soil in Yingkou, China
Ya-Lin Yin, Fang-Ling Li, Xian-Yuan Du, Ya-Xi Zhang, Lei Wang
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus, and emended description of the genus Leucobacter
Dong-Wook Hyun, Hojun Sung, Pil Soo Kim, Ji-Hyun Yun, Jin-Woo Bae
Journal of Microbiology.2021; 59(4): 360. CrossRef - Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments
Shengxiang Pei, Siwen Niu, Fuquan Xie, Wenjing Wang, Shuang Zhang, Gaiyun Zhang
Journal of Microbiology.2021; 59(10): 898. CrossRef -
Saccharobesus litoralis gen. nov., sp. nov., a novel alginate-degrading bacterium isolated from the surface of intertidal algal turf
Rosyada Amran Amrina, Go Furusawa, Nyok-Sean Lau
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Sphingopyxis microcysteis sp. nov., a novel bioactive exopolysaccharides-bearing Sphingomonadaceae isolated from the Microcystis phycosphere
Xiao-ling Zhang, Gui-xian Li, Ya-ming Ge, Nurhezreen Md Iqbal, Xi Yang, Zhen-dong Cui, Qiao Yang
Antonie van Leeuwenhoek.2021; 114(6): 845. CrossRef - Aquisphaera insulae sp. nov., a new member in the family Isosphaeraceae, isolated from the floating island of Loktak lake and emended description of the genus Aquisphaera
Gaurav Kumar, Khongsai L. Lhingjakim, Jagadeeshwari Uppada, Shabbir Ahamad, Dhanesh Kumar, Gulam Mohammad Kashif, Chintalapati Sasikala, Chintalapati Venkata Ramana
Antonie van Leeuwenhoek.2021; 114(9): 1465. CrossRef - Description of Lujinxingia vulgaris sp. nov., isolated from coastal sediment via prey-traps
Shuo Wang, Da-Shuai Mu, Guang-Yu Li, Zong-Jun Du
Antonie van Leeuwenhoek.2021; 114(11): 1805. CrossRef -
Novosphingobium olei sp. nov., with the ability to degrade diesel oil, isolated from oil-contaminated soil and proposal to reclassify Novosphingobium stygium as a later heterotypic synonym of Novosphingobium aromaticivorans
Dhiraj Kumar Chaudhary, Ram Hari Dahal, Dong-Uk Kim, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Pontibacter aquaedesilientis sp. nov., isolated from Jeongbang Waterfall, Jeju Island
Geeta Chhetri, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Aeromicrobium terrae sp. nov., isolated from a maize field
Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis
Jihyeon Kim, Seong-In Na, Dongwook Kim, Jongsik Chun
Journal of Microbiology.2021; 59(6): 609. CrossRef -
Engineering
Vibrio
sp. SP1 for the production of carotenoids directly from brown macroalgae
Sungwoo Park, Sung Won Cho, Yungyu Lee, Mincheol Choi, Jina Yang, Hojun Lee, Sang Woo Seo
Computational and Structural Biotechnology Journal.2021; 19: 1531. CrossRef -
Aquabacterium soli sp. nov., a novel bacterium isolated from soil under the long-term application of bifenthrin
Lina Sun, Wei Chen, Kaihua Huang, Weiguang Lyu, Xinhua Gao
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Permianibacter fluminis sp. nov., isolated from a freshwater stream
Miri S. Park, Jaeho Song, Jaeho Chang, Yochan Joung, Ilnam Kang, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Description of Cohnella zeiphila sp. nov., a bacterium isolated from maize callus cultures
Eric T. Johnson, Patrick F. Dowd, Christopher D. Skory, Christopher A. Dunlap
Antonie van Leeuwenhoek.2021; 114(1): 37. CrossRef -
Mesorhizobium microcysteis sp. nov., isolated from a culture of Microcystis aeruginosa
Jaejoon Jung, Ye Lin Seo, Kyeong Ryeol Kim, Hye Yoon Park, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Sphingobacterium micropteri sp. nov. and Sphingobacterium litopenaei sp. nov., isolated from aquaculture water
Mingxia Zhang, Anzhang Li, Shuaishuai Xu, Meng Chen, Qing Yao, Botao Xiao, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Maritimibacter alexandrii sp. nov., a New Member of Rhodobacteraceae Isolated from Marine Phycosphere
Xing Wang, Yun Ye, Fei-Fei Xu, Yu-Han Duan, Peng-Fei Xie, Qiao Yang, Xiao-Ling Zhang
Current Microbiology.2021; 78(11): 3996. CrossRef -
Mucilaginibacter glaciei sp. nov. and Mucilaginibacter pankratovii sp. nov., isolated from a glacier on the Tibetan Plateau
Lei-Lei Yang, Yu Pang, Hong-Can Liu, Yu-Hua Xin, Qing Liu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Pedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila
Yuxin Peng, Lingmin Jiang, Jiyoon Seo, Zhun Li, Hanna Choe, Jae Cheol Jeong, Suk Weon Kim, Young-Min Kim, Cha Young Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Zongyanglinia huanghaiensis gen. nov., sp. nov., a novel denitrifying bacterium isolated from the yellow sea, and transfer of Pelagicola marinus to Zongyanglinia gen. nov. as Zongyanglinia marinus comb. nov
Lili Xu, Ang Liu, Yan-Jiao Zhang
Antonie van Leeuwenhoek.2021; 114(2): 137. CrossRef - Pyomelanin-Producing Brevundimonas vitisensis sp. nov., Isolated From Grape (Vitis vinifera L.)
Lingmin Jiang, Doeun Jeon, Jueun Kim, Chul Won Lee, Yuxin Peng, Jiyoon Seo, Ju Huck Lee, Jin Hyub Paik, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2021;[Epub] CrossRef -
Belnapia mucosa sp. nov. and Belnapia arida sp. nov., isolated from desert biocrust
Esther Molina-Menor, Àngela Vidal-Verdú, Leila Satari, Alba Calonge-García, Javier Pascual, Juli Peretó, Manuel Porcar
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Nocardioides donggukensis sp. nov. and Hyunsoonleella aquatilis sp. nov., isolated from Jeongbang Waterfall on Jeju Island
Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Minchung Kang, Yoonseop So, Byungjo Lee, Wonhee Jang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Yangia mangrovi sp. nov., a novel member of the Roseobacter clade isolated from mangrove soil and emended description of Yangia pacifica Dai et al. 2006
Ashish Verma, Shiva S. Sundharam, Yash Pal, Bhawana Bisht, Pooja Yadav, Srinivasan Krishnamurthi
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Draft genome of a novel methanotrophic Methylobacter sp. from the volcanic soils of Pantelleria Island
Carmen Hogendoorn, Nunzia Picone, Femke van Hout, Sophie Vijverberg, Lianna Poghosyan, Theo A. van Alen, Jeroen Frank, Arjan Pol, Antonia L. Gagliano, Mike S. M. Jetten, Walter D’Alessandro, Paola Quatrini, Huub J. M. Op den Camp
Antonie van Leeuwenhoek.2021; 114(3): 313. CrossRef - Strain-Specific Identification and In Vivo Immunomodulatory Activity of Heat-Killed Latilactobacillus sakei K040706
Kyung-Sook Chung, Jae Woong Choi, Ji-Sun Shin, Seo-Yeon Kim, Hee-Soo Han, Su-Yeon Kim, Kwang-Young Lee, Joo-Yeon Kang, Chang-Won Cho, Hee-Do Hong, Young Kyoung Rhee, Kyung-Tae Lee
Foods.2021; 10(12): 3034. CrossRef - Zophobihabitans entericus gen. nov., sp. nov., a new member of the family Orbaceae isolated from the gut of a superworm Zophobas morio
Chih-Horng Kuo, Pin-Yun Huang, Shih-Yi Sheu, Der-Shyan Sheu, Li-Cheng Jheng, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2021;[Epub] CrossRef - Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus, and emended descrip
Dong-Wook Hyun, Euon Jung Tak, Pil Soo Kim, Jin-Woo Bae
Journal of Microbiology.2021; 59(2): 132. CrossRef - Devosia aurantiaca sp. nov., Isolated from Mountain Soil and Proposal of Albitalea gen. nov. to Replace the Illegitimate Prokaryotic Genus Name Geomonas Khan et al. 2020
Shehzad Abid Khan, Hyung Min Kim, Byung Hee Chun, Che Ok Jeon
Current Microbiology.2021; 78(7): 2548. CrossRef - An atlas of bacterial secondary metabolite biosynthesis gene clusters
Bin Wei, Ao‐Qi Du, Zhen‐Yi Zhou, Cong Lai, Wen‐Chao Yu, Jin‐Biao Yu, Yan‐Lei Yu, Jian‐Wei Chen, Hua‐Wei Zhang, Xue‐Wei Xu, Hong Wang
Environmental Microbiology.2021; 23(11): 6981. CrossRef - Nesterenkonia sedimenti sp. nov., isolated from marine sediment
Fuquan Xie, Shengxiang Pei, Yubian Zhang, Yun Tian, Gaiyun Zhang
Archives of Microbiology.2021; 203(10): 6287. CrossRef - Phylogenomics reveals the evolution of root nodulating alpha- and beta-Proteobacteria (rhizobia)
Saleh Rahimlou, Mohammad Bahram, Leho Tedersoo
Microbiological Research.2021; 250: 126788. CrossRef - Mesonia hitae sp. nov., isolated from the seawater of the South Atlantic Ocean
Ying Zhou, Xiujun Gao, Jingjing Xu, Guizhen Li, Rui Ma, Peisheng Yan, Chunming Dong, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology.2021;[Epub] CrossRef - Microcella flavibacter sp. nov., isolated from marine sediment, and reclassification of Chryseoglobus frigidaquae, Chryseoglobus indicus, and Yonghaparkia alkaliphila as Microcella frigidaquae comb. nov., Microcella indica nom. nov., and Microcella alkali
Fuquan Xie, Shengxiang Pei, Xiaoyun Huang, Lina Wang, Jinyan Kou, Gaiyun Zhang
Antonie van Leeuwenhoek.2021; 114(12): 2133. CrossRef - Hongsoonwoonella zoysiae gen. nov., sp. nov., a new member of the family Stappiaceae isolated from a tidal mudflat
Soon Dong Lee, Sung-Min Kim, Hong Lim Yang, Yeong-Sik Byeon, In Seop Kim
Archives of Microbiology.2021; 203(4): 1335. CrossRef -
Poseidonibacter parvus sp. nov., isolated from a squid
Min Ji Kim, Min-gyung Baek, Su-Kyoung Shin, Hana Yi
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Methylomonas albis sp. nov. and Methylomonas fluvii sp. nov.: Two cold-adapted methanotrophs from the river Elbe and emended description of the species Methylovulum psychrotolerans
Ingeborg Bussmann, Fabian Horn, Michael Hoppert, Karl-Walter Klings, Anke Saborowski, Julia Warnstedt, Susanne Liebner
Systematic and Applied Microbiology.2021; 44(6): 126248. CrossRef -
Chitinibacter bivalviorum sp. nov., isolated from the gut of the freshwater mussel Anodonta arcaeformis
Jee-Won Choi, Jae-Yun Lee, Dong-Wook Hyun, June-Young Lee, Pil Soo Kim, Jeong Eun Han, Yun-Seok Jeong, So-Yeon Lee, Hojun Sung, Euon Jung Tak, Hyun Sik Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Aerobic Denitrification and Heterotrophic Sulfur Oxidation in the Genus Halomonas Revealed by Six Novel Species Characterizations and Genome-Based Analysis
Liping Wang, Zongze Shao
Frontiers in Microbiology.2021;[Epub] CrossRef - Horizontal Gene Transfer and Genomic Erosion Shape Functional Differences of the Two-Partner Secretion Toxin Exla in the Genus Pseudomonas
Viviana Job, Laura Gomez-Valero, Adèle Renier, Christophe Rusniok, Stéphanie Bouillot, Viviane Chenal-Francisque, Erwan Gueguen, Annie Adrait, Mylène Robert-Genthon, Katy Jeannot, Peter Panchev, Sylvie Elsen, Marie-Odile Fauvarque, Yohann Couté, Carmen Bu
SSRN Electronic Journal .2021;[Epub] CrossRef - Schlegelella koreensis sp. nov., isolated from evaporator core of automobile air conditioning system
Dhiraj Kumar Chaudhary, Hyosun Lee, Ram Hari Dahal, Dong-Uk Kim
Archives of Microbiology.2021; 203(5): 2373. CrossRef -
Chryseobacterium potabilaquae sp. nov., Chryseobacterium aquaeductus sp. nov. and Chryseobacterium fistulae sp. nov., from drinking water systems
Teresa Lucena, María A. Ruvira, M. Carmen Macián, David R. Arahal, Rosa Aznar, María J. Pujalte
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Flavobacterium undicola sp. nov., isolated from a freshwater lake
Wen-Ming Chen, Yi-Ru Xie, Soon-Wo Kwon, Shih-Yi Sheu
Archives of Microbiology.2021; 203(3): 989. CrossRef - Flavobacterium difficile sp. nov., isolated from a freshwater waterfall
Wen-Ming Chen, Ya-Xiu You, Chiu-Chung Young, Shih-Yao Lin, Shih-Yi Sheu
Archives of Microbiology.2021; 203(7): 4449. CrossRef -
Salipiger mangrovisoli sp. nov., isolated from mangrove soil and the proposal for the reclassification of Paraphaeobacter pallidus as Salipiger pallidus comb. nov.
Juan Du, Yang Liu, Tao Pei, Ming-Rong Deng, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Classification of uncultivated anammox bacteria and Candidatus Uabimicrobium into new classes and provisional nomenclature as Candidatus Brocadiia classis nov. and Candidatus Uabimicrobiia classis nov. of the phylum Planctomycetes and novel family Candida
Tushar Lodha, Simran Narvekar, Prachi Karodi
Systematic and Applied Microbiology.2021; 44(6): 126272. CrossRef -
Sulfurimonas indica sp. nov., a hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a hydrothermal sulfide chimney in the Northwest Indian Ocean
Qitao Hu, Shasha Wang, Qiliang Lai, Zongze Shao, Lijing Jiang
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Pontibacter cellulosilyticus sp. nov., a carboxymethyl cellulose-hydrolysing bacterium isolated from coastal water
Minchung Kang, Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Chitinophaga rhizophila sp. nov., isolated from rhizosphere soil of banana
Xian-Jiao Zhang, Guang-Da Feng, Fan Yang, Honghui Zhu, Qing Yao
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Jinshanibacter allomyrinae sp. nov., isolated from larvae of Allomyrina dichotoma, proposal of Insectihabitans xujianqingii gen. nov., comb. nov. and emended descriptions of the genera Jinshanibacter, Limnobaculum and Pragia
Soon Dong Lee, Yeong-Sik Byeon, Sung-Min Kim, Hong Lim Yang, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Revealing taxon-specific heavy metal-resistance mechanisms in denitrifying phosphorus removal sludge using genome-centric metaproteomics
Yuan Lin, Liye Wang, Ke Xu, Kan Li, Hongqiang Ren
Microbiome.2021;[Epub] CrossRef - Development of qPCR Detection Assay for Potato Pathogen Pectobacterium atrosepticum Based on a Unique Target Sequence
Anna A. Lukianova, Peter V. Evseev, Alexander A. Stakheev, Irina B. Kotova, Sergey K. Zavriev, Alexander N. Ignatov, Konstantin A. Miroshnikov
Plants.2021; 10(2): 355. CrossRef - Marivivens aquimaris sp. nov., isolated from seawater
Jeong Ah Kim, Binna Lee, Ji Young Kang, Jae Jun Song, Jong Hyun Choi
Archives of Microbiology.2021; 203(6): 3229. CrossRef - Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. isolated from soil
Kyeong Ryeol Kim, Kyung Hyun Kim, Shehzad Abid Khan, Hyung Min Kim, Dong Min Han, Che Ok Jeon
Journal of Microbiology.2021; 59(8): 709. CrossRef - Sediminibacterium soli sp. nov., isolated from soil
Shijuan Wu, Limin Zhong, Shuijiao Liao, Tengfei Li, Zijie Zhou, Gejiao Wang
Archives of Microbiology.2021; 203(3): 967. CrossRef - Rhodobacter amnigenus sp. nov. and Rhodobacter ruber sp. nov., isolated from freshwater habitats
Wen-Ming Chen, Ting-Hsuan Chang, Che-Chia Yang, Der-Shyan Sheu, Li-Cheng Jheng, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology.2021;[Epub] CrossRef -
Alcanivorax profundimaris sp. nov., a Novel Marine Hydrocarbonoclastic Bacterium Isolated from Seawater and Deep-Sea Sediment
Chunming Dong, Qiliang Lai, Xiupian Liu, Li Gu, Yu Zhang, Zhangxian Xie, Dazhi Wang, Zongze Shao
Current Microbiology.2021; 78(3): 1053. CrossRef - Ornithobacterium rhinotracheale: MALDI-TOF MS and Whole Genome Sequencing Confirm That Serotypes K, L and M Deviate from Well-Known Reference Strains and Numerous Field Isolates
Merima Alispahic, Lukas Endler, Michael Hess, Claudia Hess
Microorganisms.2021; 9(5): 1006. CrossRef -
Geomonas silvestris sp. nov., Geomonas paludis sp. nov. and Geomonas limicola sp. nov., isolated from terrestrial environments, and emended description of the genus Geomonas
Hideomi Itoh, Zhenxing Xu, Yoko Masuda, Natsumi Ushijima, Chie Hayakawa, Yutaka Shiratori, Keishi Senoo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Marinobacter mangrovi sp. nov., isolated from mangrove sediment
En Yi, Zongze Shao, Guizhen Li, Xiaobo Liang, Meixian Zhou
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Paraneptunicella aestuarii gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from seawater in East China Sea
Yanzhu Zhang, Shufen He, Liufei Shi, Yang Liu, Deqiang Mao, Biying Liu, Xiaoping He, Bahareh Nowruzi, Dawoon Jung, Weiyan Zhang, Lijian Ding, Shan He, Liwei Liu
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Sulfurimonas sediminis sp. nov., a novel hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a hydrothermal vent at the Longqi system, southwestern Indian ocean
Shasha Wang, Zongze Shao, Qiliang Lai, Xuewen Liu, Shaobin Xie, Lijing Jiang, Suping Yang
Antonie van Leeuwenhoek.2021; 114(6): 813. CrossRef -
Dyadobacter sandarakinus sp. nov., isolated from Arctic tundra soil, and emended descriptions of Dyadobacter alkalitolerans, Dyadobacter koreensis and Dyadobacter psychrophilus
Yongping Zhang, Xiaoya Peng, Kun Qin, Jia Liu, Qiang Xu, Jingjing Niu, Yanyan Zheng, Fang Peng
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria
Yujin Jeong, Sang-Hyeok Cho, Hookeun Lee, Hyung-Kyoon Choi, Dong-Myung Kim, Choul-Gyun Lee, Suhyung Cho, Byung-Kwan Cho
Microorganisms.2020; 8(12): 1849. CrossRef - Description of Three Novel Members in the Family Geobacteraceae, Oryzomonas japonicum gen. nov., sp. nov., Oryzomonas sagensis sp. nov., and Oryzomonas ruber sp. nov.
Zhenxing Xu, Yoko Masuda, Chie Hayakawa, Natsumi Ushijima, Keisuke Kawano, Yutaka Shiratori, Keishi Senoo, Hideomi Itoh
Microorganisms.2020; 8(5): 634. CrossRef -
Hypericibacter terrae gen. nov., sp. nov. and Hypericibacter adhaerens sp. nov., two new members of the family Rhodospirillaceae isolated from the rhizosphere of Hypericum perforatum
Zahra Noviana, Selma Vieira, Javier Pascual, Serge Alain Tanemossu Fobofou, Manfred Rohde, Cathrin Spröer, Boyke Bunk, Jorg Overmann
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(3): 1850. CrossRef -
Mucilaginibacter celer sp. nov. and Aquirhabdus parva gen. nov., sp. nov., isolated from freshwater
MinJi Kim, Su-Kyoung Shin, Hana Yi
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5479. CrossRef -
Methylotenera oryzisoli sp. nov., a lanthanide-dependent methylotrophic bacteria isolated from rice field soil
Haoxin Lv, Nurettin Sahin, Akio Tani
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2713. CrossRef -
Lewinella aurantiaca sp. nov., a carotenoid pigment-producing bacterium isolated from surface seawater
Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Minchung Kang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6180. CrossRef - Pseudomonas kitaguniensis sp. nov., a pathogen causing bacterial rot of Welsh onion in Japan
Hiroyuki Sawada, Takashi Fujikawa, Yoshie Nishiwaki, Harukuni Horita
International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 3018. CrossRef -
Sandaracinomonas limnophila gen. nov., sp. nov., a new member of the family Cytophagaceae isolated from a freshwater mesocosm
Wen-Ming Chen, Cheng-Ye Cai, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2178. CrossRef -
Use of Newly Designed Primers for Quantification of Complete Ammonia-Oxidizing (Comammox) Bacterial Clades and Strict Nitrite Oxidizers in the Genus
Nitrospira
Ran Jiang, Jian-Gong Wang, Ting Zhu, Bin Zou, Dan-Qi Wang, Sung-Keun Rhee, Dong An, Zhi-Yuan Ji, Zhe-Xue Quan, Alfons J. M. Stams
Applied and Environmental Microbiology.2020;[Epub] CrossRef - Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum
Regina Rettenmaier, Martina Schneider, Bernhard Munk, Michael Lebuhn, Sebastian Jünemann, Alexander Sczyrba, Irena Maus, Vladimir Zverlov, Wolfgang Liebl
Microorganisms.2020; 8(6): 915. CrossRef -
Flavobacterium restrictum sp. nov., Flavobacterium rhamnosiphilum sp. nov., and Flavobacterium zepuense sp. nov. isolated from glaciers
Guo-Qing Zhang, Lei-Lei Yang, Qing Liu, Hong-Can Liu, Yu-Guang Zhou, Yu-Hua Xin
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4583. CrossRef -
Arenimonas terrae sp. nov., isolated from orchard soil
Dong Min Han, Byung Hee Chun, Hyung Min Kim, Shehzad Abid Khan, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(1): 537. CrossRef - Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection
Anna A. Lukianova, Mikhail M. Shneider, Peter V. Evseev, Anna M. Shpirt, Eugenia N. Bugaeva, Anastasia P. Kabanova, Ekaterina A. Obraztsova, Kirill K. Miroshnikov, Sofiya N. Senchenkova, Alexander S. Shashkov, Stepan V. Toschakov, Yuriy A. Knirel, Alexand
Frontiers in Microbiology.2020;[Epub] CrossRef - Shedding light on biogas: Phototrophic biofilms in anaerobic digesters hold potential for improved biogas production
Christian Abendroth, Adriel Latorre-Pérez, Manuel Porcar, Claudia Simeonov, Olaf Luschnig, Cristina Vilanova, Javier Pascual
Systematic and Applied Microbiology.2020; 43(1): 126024. CrossRef - Saliniradius amylolyticus gen. nov., sp. nov., isolated from solar saltern sediment
Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology.2020; 70(1): 267. CrossRef -
Pseudomonas lalkuanensis sp. nov., isolated from a bacterial consortia of contaminated soil enriched for the remediation of e-waste
Vipool Thorat, Kiran Kirdat, Bhavesh Tiwarekar, Elaine DaCosta, Prasenjit Debbarma, Yogesh Shouche, Shivaji Sathe, Reeta Goel, Tushar Lodha, Amit Yadav
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6468. CrossRef -
Denitrobaculum tricleocarpae gen. nov., sp. nov., a marine bacterium from coralline algae Tricleocarpa sp
Guanghua Wang, Dahao Tang, Guangyu Li, Shuailiang Xu, Ge Dang, Hongfei Su, Zhiheng Liao, Biao Chen, Wen Huang, Jiayuan Liang, Kefu Yu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3335. CrossRef -
Roseovarius gahaiensis sp. nov., isolated from Gahai Saline Lake, PR China
Xia Sun, Fang Wang, Yang Liu, Ying Lu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5330. CrossRef - Bacillus yapensis sp. nov., a novel piezotolerant bacterium isolated from deep-sea sediment of the Yap Trench, Pacific Ocean
Xiashutong Xu, Libo Yu, Guangxin Xu, Qilin Wang, Shiping Wei, Xixiang Tang
Antonie van Leeuwenhoek.2020; 113(3): 389. CrossRef - Description of Luteithermobacter gelatinilyticus gen. nov., sp. nov., and Paremcibacter congregatus gen. nov., comb. nov. via reclassification of the genus Emcibacter
Mi-Jeong Park, Teddy Namirimu, Sung-Hyun Yang, Kae Kyoung Kwon
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4691. CrossRef - Genetic Organization of the aprX-lipA2 Operon Affects the Proteolytic Potential of Pseudomonas Species in Milk
Christopher Maier, Christopher Huptas, Mario von Neubeck, Siegfried Scherer, Mareike Wenning, Genia Lücking
Frontiers in Microbiology.2020;[Epub] CrossRef -
Nonomuraea nitratireducens sp. nov., a new actinobacterium isolated from Suaeda australis Moq. rhizosphere
Yixin Ou, Yong Sheng, Xiaojing Hu, Dongjin Leng, Jiafu Huang, Zhiyu Hu, Linquan Bai, Zixin Deng, Qianjin Kang, Yingying Wu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(9): 5026. CrossRef - Muricauda oceani sp. nov., isolated from the East Pacific Ocean
Bingxia Dong, Sidong Zhu, Ting Chen, Na Ren, Xiunuan Chen, Yong Chen, Zehao Xue, Xudong Shen, Yizhe Huang, Jifang Yang, Jigang Chen
International Journal of Systematic and Evolutionary Microbiology.2020; 70(6): 3839. CrossRef - Sphingobium fluviale sp. nov., isolated from a river
Shih-Yi Sheu, Ya-Ping Guo, Soon-Wo Kwon, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2020; 70(2): 827. CrossRef - Characterization of Staphylococcus intermedius Group Isolates Associated with Animals from Antarctica and Emended Description of Staphylococcus delphini
Veronika Vrbovská, Ivo Sedláček, Michal Zeman, Pavel Švec, Vojtěch Kovařovic, Ondrej Šedo, Monika Laichmanová, Jiří Doškař, Roman Pantůček
Microorganisms.2020; 8(2): 204. CrossRef - Variovorax beijingensis sp. nov., a novel plant-associated bacterial species with plant growth-promoting potential isolated from different geographic regions of Beijing, China
Jun-lian Gao, Yu-chen Sun, Jing Xue, Pengbo Sun, Hui Yan, Mohammad Sayyar Khan, Li-wei Wang, Xiuhai Zhang, Jian-guang Sun
Systematic and Applied Microbiology.2020; 43(6): 126135. CrossRef -
Aliikangiella coralliicola sp. nov., a bacterium isolated from coral Porites lutea, and proposal of Pleioneaceae fam. nov. to accommodate Pleionea and Aliikangiella
Guanghua Wang, Ge Dang, Shuailiang Xu, Jianfeng Liu, Hongfei Su, Jiayuan Liang, Wen Huang, Yinghui Wang, Kefu Yu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(11): 5880. CrossRef -
Jeotgalibaca ciconiae sp. nov., isolated from the faeces of an Oriental stork
So-Yeon Lee, Woorim Kang, Pil Soo Kim, Hyun Sik Kim, Hojun Sung, Na-Ri Shin, Ji-Hyun Yun, Jae-Yun Lee, June-Young Lee, Mi-Ja Jung, Yun-Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong-Wook Hyun, Myung-Suk Kang, Ki-Eun Lee, Byoung-Hee Lee, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3247. CrossRef - Aquabacterium lacunae sp. nov., isolated from a freshwater pond
Wen-Ming Chen, Tzu-Ying Chen, Soon-Wo Kwon, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology.2020; 70(4): 2888. CrossRef -
Zoogloea dura sp. nov., a N2-fixing bacterium isolated from forest soil and emendation of the genus Zoogloea and the species Zoogloea oryzae and Zoogloea ramigera
Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5312. CrossRef -
Roseimaritima sediminicola sp. nov., a new member of Planctomycetaceae isolated from Chilika lagoon
Dhanesh Kumar, Kumar Gaurav, Jagadeeshwari U, Deepshikha G, Sasikala Ch., Ramana Ch.V.
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2616. CrossRef - Lactobacillus jinshani sp. nov., isolated from solid-state vinegar culture of Zhenjiang aromatic vinegar
Yongjian Yu, Xin Li, Junhong Zhang, Li-Juan Chai, Zhen-Ming Lu, Zheng-Hong Xu
Antonie van Leeuwenhoek.2020; 113(1): 43. CrossRef - Aquirufa rosea sp. nov., isolated from a freshwater lake
Shih-Yi Sheu, Tzu-Ying Chen, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 3145. CrossRef -
Staphylococcus borealis sp. nov., isolated from human skin and blood
Maria Pain, Runa Wolden, Daniel Jaén-Luchoro, Francisco Salvà-Serra, Beatriz Piñeiro Iglesias, Roger Karlsson, Claus Klingenberg, Jorunn Pauline Cavanagh
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6067. CrossRef - Exploring the Diversity Within the Genus Francisella – An Integrated Pan-Genome and Genome-Mining Approach
Rajender Kumar, Jeanette E. Bröms, Anders Sjöstedt
Frontiers in Microbiology.2020;[Epub] CrossRef -
Mesonia oceanica sp. nov., isolated from oceans during the Tara oceans expedition, with a preference for mesopelagic waters
Teresa Lucena, Isabel Sanz-Sáez, David R. Arahal, Silvia G. Acinas, Olga Sánchez, Carlos Pedrós-Alió, Rosa Aznar, María J. Pujalte
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4329. CrossRef - Jiella pacifica sp. nov., isolated from the West Pacific Ocean
Zehao Xue, Sidong Zhu, Xiunuan Chen, Ting Chen, Na Ren, Yong Chen, Bingxia Dong, Xudong Shen, Yizhe Huang, Jifang Yang, Jigang Chen
International Journal of Systematic and Evolutionary Microbiology.2020; 70(7): 4345. CrossRef - Sphingomonas lacunae sp. nov., isolated from a freshwater pond
Shih-Yi Sheu, Che-Chia Yang, Der-Shyan Sheu, Jyh-Ming Tsai, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2020; 70(11): 5899. CrossRef - Bradymonabacteria, a novel bacterial predator group with versatile survival strategies in saline environments
Da-Shuai Mu, Shuo Wang, Qi-Yun Liang, Zhao-Zhong Du, Renmao Tian, Yang Ouyang, Xin-Peng Wang, Aifen Zhou, Ya Gong, Guan-Jun Chen, Joy Van Nostrand, Yunfeng Yang, Jizhong Zhou, Zong-Jun Du
Microbiome.2020;[Epub] CrossRef -
Gemmobacter aquarius sp. nov., Runella rosea sp. nov. and Flavobacterium fluviale sp. nov., isolated from the Namhangang River system
Min-gyung Baek, Su-Kyoung Shin, Hana Yi
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(11): 5640. CrossRef - Sphingobacterium endophyticum sp. nov., a novel endophyte isolated from halophyte
Yang-Yang Liu, Fang Liu, Yu-Qian Li, Rui-Feng Lei, Qin Ma, Manik Prabhu Narsing Rao, Dilireba Abudourousuli, Zulihumaer Rouzi, Muyesaier Aosiman, Deng-Di An, Wen-Jun Li
Archives of Microbiology.2020; 202(10): 2771. CrossRef -
Sphingomonas montanisoli sp. nov., isolated from mountain soil
Zixiao Xu, Yuxiao Zhang, Yasir Muhammad, Gejiao Wang
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(6): 3606. CrossRef - Out of the Abyss: Genome and Metagenome Mining Reveals Unexpected Environmental Distribution of Abyssomicins
Alba Iglesias, Adriel Latorre-Pérez, James E. M. Stach, Manuel Porcar, Javier Pascual
Frontiers in Microbiology.2020;[Epub] CrossRef -
Pseudomonas xionganensis sp. nov., isolated from Baiyangdian Lake in Xiong'an New Area
Yingying Zhao, Yunzhen Yang, Fei He, Chao Wang, Jie Feng, Xiumin Zhang
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6052. CrossRef - Massilia aquatica sp. nov., Isolated from a Subtropical Stream in China
Hui-Bin Lu, Tong-Chu Deng, Mei-Ying Xu
Current Microbiology.2020; 77(10): 3185. CrossRef - Duganella rivus sp. nov., Duganella fentianensis sp. nov., Duganella qianjiadongensis sp. nov. and Massilia guangdongensis sp. nov., isolated from subtropical streams in China and reclassification of all species within genus Pseudoduganella
Hui-Bin Lu, Zhi-Peng Cai, Yong-Gang Yang, Mei-Ying Xu
Antonie van Leeuwenhoek.2020; 113(8): 1155. CrossRef -
Poritiphilus flavus gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from coral Porites lutea
Guanghua Wang, Shuailiang Xu, Ge Dang, Jianfeng Liu, Hongfei Su, Biao Chen, Zhiheng Liao, Wen Huang, Jiayuan Liang, Yinghui Wang, Kefu Yu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(11): 5620. CrossRef -
Sphingomonas edaphi sp. nov., a novel species isolated from beach soil in the Republic of Korea
Hyungdong Kim, Geeta Chhetri, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(1): 522. CrossRef -
Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae
Teresa Lucena, David R. Arahal, Isabel Sanz-Sáez, Silvia G. Acinas, Olga Sánchez, Rosa Aznar, Carlos Pedrós-Alió, María J. Pujalte
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(2): 1231. CrossRef - Hymenobacter terrestris sp. nov. and Hymenobacter lapidiphilus sp. nov., isolated from regoliths in Antarctica
Ivo Sedláček, Roman Pantůček, Michal Zeman, Pavla Holochová, Ondrej Šedo, Eva Staňková, Pavel Švec, Stanislava Králová, Petra Vídeňská, Lenka Micenková, Urvashi, Suresh Korpole, Rup Lal
International Journal of Systematic and Evolutionary Microbiology.2020; 70(12): 6364. CrossRef - Reclassification of genus Izhakiella into the family Erwiniaceae based on phylogenetic and genomic analyses
Lingmin Jiang, Dexin Wang, Ji-Sun Kim, Ju Huck Lee, Dae-Hyuk Kim, Suk Weon Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3541. CrossRef -
Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella
Shih-Yi Sheu, Li-Chu Chen, Che-Chia Yang, Aurelien Carlier, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6381. CrossRef - Allorhizobium terrae sp. nov., isolated from paddy soil, and reclassification of Rhizobium oryziradicis (Zhao et al. 2017) as Allorhizobium oryziradicis comb. nov.
Shih-Yao Lin, Asif Hameed, Hsin-I Huang, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology.2020; 70(1): 397. CrossRef -
Antrihabitans stalactiti gen. nov., sp. nov., a new member of the family Nocardiaceae isolated from a cave
Soon Dong Lee, In Seop Kim, Susanne Verbarg, Yochan Joung
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5503. CrossRef -
Methylobacterium terricola sp. nov., a gamma radiation-resistant bacterium isolated from gamma ray-irradiated soil
Jiyoun Kim, Geeta Chhetri, Inhyup Kim, Byungjo Lee, Wonhee Jang, Myung Kyum Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2449. CrossRef -
Pseudomonas leptonychotis sp. nov., isolated from Weddell seals in Antarctica
Dana Nováková, Pavel Švec, Michal Zeman, Hans-Jürgen Busse, Ivana Mašlaňová, Roman Pantůček, Stanislava Králová, Lucie Krištofová, Ivo Sedláček
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(1): 302. CrossRef - Tichowtungia aerotolerans gen. nov., sp. nov., a novel representative of the phylum Kiritimatiellaeota and proposal of Tichowtungiaceae fam. nov., Tichowtungiales ord. nov. and Tichowtungiia class. nov.
Da-Shuai Mu, Liu-Yan Zhou, Qi-Yun Liang, Guan-Jun Chen, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology.2020; 70(9): 5001. CrossRef -
Alcanivorax sediminis sp. nov., isolated from deep-sea sediment of the Pacific Ocean
Xianzhi Liao, Qiliang Lai, Junpeng Yang, Chunming Dong, Dengfeng Li, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4280. CrossRef -
Oleiharenicola lentus sp. nov., isolated from irrigation water
Wen-Ming Chen, Tzu-Ying Chen, Che-Chia Yang, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3440. CrossRef -
Aestuariirhabdus litorea gen. nov., sp. nov., isolated from a sea tidal flat and proposal of Aestuariirhabdaceae fam. nov.
Shehzad Abid Khan, Hye Su Jung, Hyung Min Kim, Jeill Oh, Sang-Suk Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2239. CrossRef - Larkinella punicea sp. nov., isolated from manganese mine soil
Zijie Zhou, Lin Zhu, Yixuan Dong, Xian Xia, Shijuan Wu, Gejiao Wang
Archives of Microbiology.2020; 202(9): 2517. CrossRef - Persicimonas caeni gen. nov., sp. nov., the Representative of a Novel Wide-Ranging Predatory Taxon in Bradymonadales
Shuo Wang, Dashuai Mu, Zong-Jun Du
Frontiers in Microbiology.2020;[Epub] CrossRef - Distribution and conservation of known secondary metabolite biosynthesis gene clusters in the genomes of geographically diverse Microcystis aeruginosa strains
Leanne A. Pearson, Nicholas D. Crosbie, Brett A. Neilan
Marine and Freshwater Research.2020; 71(5): 701. CrossRef -
Terricaulis silvestris gen. nov., sp. nov., a novel prosthecate, budding member of the family Caulobacteraceae isolated from forest soil
Selma Vieira, Javier Pascual, Christian Boedeker, Alicia Geppert, Thomas Riedel, Manfred Rohde, Jörg Overmann
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(9): 4966. CrossRef - Description of Azotobacter chroococcum subsp. isscasi subsp. nov. isolated from paddy soil and establishment of Azotobacter chroococcum subsp. chroococcum subsp. nov.
Haiyang Jin, Hui Wang, Yanhui Zhang, Tianlong Hu, Zhibin Lin, Benjuan Liu, Jing Ma, Xiaojie Wang, Qi Liu, Xingwu Lin, Zubin Xie
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(3): 2124. CrossRef -
Gracilibacillus oryzae sp. nov., isolated from rice seeds
Shan-Wen He, Xing Wang, He-Bao Guo, Ji-Gang Han, Kyu Kyu Thin, Ju-sheng Gao, Li-An Ma, Xiao-Xia Zhang
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5467. CrossRef -
Senegalimassilia faecalis sp. nov., an anaerobic actinobacterium isolated from human faeces, and emended description of the genus Senegalimassilia
Kook-Il Han, Ji-Sun Kim, Keun Chul Lee, Mi Kyung Eom, Min Kuk Suh, Han Sol Kim, Seung-Hwan Park, Ju Huck Lee, Se Won Kang, Jam-Eon Park, Byeong Seob Oh, Seung Yeob Yu, Seung-Hyeon Choi, Dong Ho Lee, Hyuk Yoon, Byung-Yong Kim, Je Hee Lee, Jung-Sook Lee
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(3): 1684. CrossRef - Limnobacter alexandrii sp. nov., a thiosulfate-oxidizing, heterotrophic and EPS-bearing Burkholderiaceae isolated from cultivable phycosphere microbiota of toxic Alexandrium catenella LZT09
Yuhan Duan, Zhiwei Jiang, Zheng Wu, Zhi Sheng, Xi Yang, Jingya Sun, Xiaoling Zhang, Qiao Yang, Xinwei Yu, Jianbo Yan
Antonie van Leeuwenhoek.2020; 113(11): 1689. CrossRef -
Alteromonas profundi sp. nov., isolated from the Indian Ocean
Xudong Shen, Sidong Zhu, Bingxia Dong, Yong Chen, Zehao Xue, Na Ren, Ting Chen, Xiunuan Chen, Jifang Yang, Jigang Chen
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4531. CrossRef -
Wenzhouxiangella limi sp. nov., isolated from a salt lake
Xiao-Yu Zhang, Rui Zhang, Jia-Cheng Wang, Ting Zhang, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4610. CrossRef -
Hymenobacter ginkgonis sp. nov., isolated from bark of Ginkgo biloba
Inseong Cha, Heeyoung Kang, Haneul Kim, Seokhyeon Bae, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4760. CrossRef -
Maribacter luteus sp. nov., a marine bacterium isolated from intertidal sand of the Yellow Sea
Ang Liu, Yan-Jiao Zhang, De-Kun Liu, Xiu-Zhen Li
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3497. CrossRef -
Cryobacterium soli sp. nov., isolated from forest soil
Chunjie Gong, Qiliang Lai, Hanfeng Cai, Yanming Jiang, Hu Liao, Yunfei Liu, Dongsheng Xue
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(1): 675. CrossRef -
Flavobacterium supellecticarium sp. nov., isolated from an abandoned construction timber
Shih-Yao Lin, Wen-Ming Chen, Guan-Hua Huang, Asif Hameed, Chun-Tse Chang, Chia-Fang Tsai, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(6): 3731. CrossRef - Rubrivivax albus sp. nov., isolated from a freshwater pond
Shih-Yi Sheu, Zhi-Hao Li, Chiu-Chung Young, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2020; 70(2): 805. CrossRef -
Tabrizicola oligotrophica sp. nov. and Rhodobacter tardus sp. nov., two new species of bacteria belonging to the family Rhodobacteraceae
Ceshing Sheu, Zhi-Hao Li, Shih-Yi Sheu, Che-Chia Yang, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6266. CrossRef -
Spirosoma telluris sp. nov. and Spirosoma arboris sp. nov. isolated from soil and tree bark, respectively
Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5355. CrossRef -
Devosia indica sp. nov., isolated from surface seawater in the Indian Ocean
Danqiu Lin, Yizhe Huang, Yong Chen, Sidong Zhu, Jifang Yang, Jigang Chen
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(1): 340. CrossRef - Brevilactibacter flavus gen. nov., sp. nov., a novel bacterium of the family Propionibacteriaceae isolated from raw milk and dairy products and reclassification of Propioniciclava sinopodophylli as Brevilactibacter sinopodophylli comb. nov.
Mareike Wenning, Franziska Breitenwieser, Christopher Huptas, Etienne Doll, Benedikt Bächler, Annika Schulz, Andreas Dunkel, Thomas Hofmann, Mario von Neubeck, Hans-Jürgen Busse, Siegfried Scherer
International Journal of Systematic and Evolutionary Microbiology.2020; 70(4): 2186. CrossRef - Ideonella livida sp. nov., isolated from a freshwater lake
Wen-Ming Chen, Li-Chu Chen, Der-Shyan Sheu, Jyh-Ming Tsai, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology.2020; 70(9): 4942. CrossRef - Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory
Lingmin Jiang, Dexin Wang, Jung-Sook Lee, Dae-Hyuk Kim, Jae Cheol Jeong, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
Journal of Microbiology.2020; 58(5): 357. CrossRef -
Hymenobacter setariae sp. nov., isolated from the ubiquitous weedy grass Setaria viridis
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Hyungdong Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(6): 3724. CrossRef - Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil
Shehzad Abid Khan, Sang Eun Jeong, Hye Yoon Park, Sang-Suk Lee, Che Ok Jeon
Current Microbiology.2020; 77(2): 286. CrossRef - Arenibacter lacus sp. nov., Isolated from Chilika Lagoon, India
Dhanesh Kumar, Nandardhane Smita, Gaurav Kumar, Gandham Suresh, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana
Current Microbiology.2020; 77(12): 4152. CrossRef -
Adhaeribacter arboris sp. nov., and Adhaeribacter pallidiroseus sp. nov., novel bacteria isolated from birch tree (Betula platyphylla)
Heeyoung Kang, Haneul Kim, Inseong Cha, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6195. CrossRef - Sphingobium algorifonticola sp. nov., isolated from a cold spring
Wen-Ming Chen, Ya-Ping Guo, Ceshing Sheu, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology.2020; 70(1): 309. CrossRef - Distribution of Phototrophic Purple Nonsulfur Bacteria in Massive Blooms in Coastal and Wastewater Ditch Environments
Akira Hiraishi, Nobuyoshi Nagao, Chinatsu Yonekawa, So Umekage, Yo Kikuchi, Toshihiko Eki, Yuu Hirose
Microorganisms.2020; 8(2): 150. CrossRef - Rhodovarius crocodyli sp. nov., isolated from a crocodile pond
Wen-Ming Chen, Yi-Ru Xie, Der-Shyan Sheu, Jyh-Ming Tsai, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology.2020; 70(9): 5141. CrossRef - Description of Azoarcus nasutitermitis sp. nov. and Azoarcus rhizosphaerae sp. nov., two nitrogen-fixing species isolated from termite nest and rhizosphere of Ficus religiosa
Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Guan-Hua Huang, Yi-Han Hsu, Chiu-Chung Young
Antonie van Leeuwenhoek.2020; 113(7): 933. CrossRef -
Cohnella fermenti sp. nov., isolated from a fermentation process
Shih-Yao Lin, Wen-Ming Chen, Asif Hameed, Guan-Hua Huang, Mei-Hua Hung, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2602. CrossRef -
Gimesia chilikensis sp. nov., a haloalkali-tolerant planctomycete isolated from Chilika lagoon and emended description of the genus Gimesia
Dhanesh Kumar, Kumar Gaurav, Sreya PK, Shabbir A., Jagadeeshwari Uppada, Sasikala Ch., Ramana Ch.V.
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(6): 3647. CrossRef -
Salinibius halmophilus gen. nov., sp. nov., isolated from a marine solar saltern
Si-Kai Ling, Hui Zhang, Nan-Nan Wang, Guan-Jun Chen, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(2): 1079. CrossRef - Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in two sequential rapid sand filters
Lianna Poghosyan, Hanna Koch, Jeroen Frank, Maartje A.H.J. van Kessel, Geert Cremers, Theo van Alen, Mike S.M. Jetten, Huub J.M. Op den Camp, Sebastian Lücker
Water Research.2020; 185: 116288. CrossRef -
“
Candidatus
Desulfobulbus rimicarensis,” an Uncultivated Deltaproteobacterial Epibiont from the Deep-Sea Hydrothermal Vent Shrimp
Rimicaris exoculata
Lijing Jiang, Xuewen Liu, Chunming Dong, Zhaobin Huang, Marie-Anne Cambon-Bonavita, Karine Alain, Li Gu, Shasha Wang, Zongze Shao, Shuang-Jiang Liu
Applied and Environmental Microbiology.2020;[Epub] CrossRef -
Nocardioides convexus sp. nov. and Nocardioides anomalus sp. nov., isolated from soil and mineral water
Yuna Park, Qingzhen Liu, Soohyun Maeng, Won Jung Choi, Yoonjee Chang, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6402. CrossRef - Mesorhizobium alexandrii sp. nov., isolated from phycosphere microbiota of PSTs-producing marine dinoflagellate Alexandrium minutum amtk4
Xi Yang, Zhiwei Jiang, Jing Zhang, Xin Zhou, Xiaoling Zhang, Lei Wang, Ting Yu, Zhilin Wang, Jinlong Bei, Bo Dong, Zhangyan Dai, Qiao Yang, Zhuang Chen
Antonie van Leeuwenhoek.2020; 113(7): 907. CrossRef - Description of Massilia rubra sp. nov., Massilia aquatica sp. nov., Massilia mucilaginosa sp. nov., Massilia frigida sp. nov., and one Massilia genomospecies isolated from Antarctic streams, lakes and regoliths
Pavla Holochová, Ivana Mašlaňová, Ivo Sedláček, Pavel Švec, Stanislava Králová, Vojtěch Kovařovic, Hans-Jürgen Busse, Eva Staňková, Miloš Barták, Roman Pantůček
Systematic and Applied Microbiology.2020; 43(5): 126112. CrossRef - Paradesulfovibrio onnuriensis gen. nov., sp. nov., a chemolithoautotrophic sulfate-reducing bacterium isolated from the Onnuri vent field of the Indian Ocean and reclassification of Desulfovibrio senegalensis as Paradesulfovibrio senegalensis comb. nov.
Yun Jae Kim, Jhung-Ahn Yang, Jae Kyu Lim, Mi-Jeong Park, Sung-Hyun Yang, Hyun Sook Lee, Sung Gyun Kang, Jung-Hyun Lee, Kae Kyoung Kwon
Journal of Microbiology.2020; 58(4): 252. CrossRef - Litorilituus lipolyticus sp. nov., isolated from intertidal sand of the Yellow Sea in China, and emended description of Colwellia asteriadis
Ang Liu, Yan-Jiao Zhang, Qing-Jie Xue, Hui Wang, Yuan-Yuan Yang, Feng Du, Long-Yu Zhao, Hong-Hua Zhang, Yun-Qing Li, Xiu-Zhen Li
Antonie van Leeuwenhoek.2020; 113(4): 449. CrossRef - Wocania indica gen. nov., sp. nov., isolated from deep sea hydrothermal sulfide in the northwest Indian Ocean, and proposal to reclassify Flaviramulus ichthyoenteri as Wocania ichthyoenteri comb. nov.
Yang He, Xiang Zeng, Jinbo Xiong, Qiliang Lai, Jianyang Li, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5488. CrossRef - Whole genome analysis calls for a taxonomic rearrangement of the genus Colwellia
Ang Liu, Yan-Jiao Zhang, Peng Cheng, Ya-Jie Peng, Jochen Blom, Qing-Jie Xue
Antonie van Leeuwenhoek.2020; 113(7): 919. CrossRef -
Leeia aquatica sp. nov., isolated from freshwater
Jaeho Song, Yochan Joung, Shan-Hui Li, Juchan Hwang, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(11): 5848. CrossRef -
Aurantiacibacter rhizosphaerae sp. nov., isolated from a rhizosphere mudflat of a halophyte and proposal to reclassify Erythrobacter suaedae Lee et al. 2019. and Erythrobacter flavus Yoon et al. 2003 as Aurantiacibacter suaedae comb. nov. and
Soon Dong Lee, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6257. CrossRef - Hydrogen and Carbon Monoxide-Utilizing Kyrpidia spormannii Species From Pantelleria Island, Italy
Carmen Hogendoorn, Arjan Pol, Nunzia Picone, Geert Cremers, Theo A. van Alen, Antonina L. Gagliano, Mike S. M. Jetten, Walter D’Alessandro, Paola Quatrini, Huub J. M. Op den Camp
Frontiers in Microbiology.2020;[Epub] CrossRef -
Fundicoccus ignavus gen. nov., sp. nov., a novel genus of the family Aerococcaceae isolated from bulk tank milk
Annemarie Siebert, Christopher Huptas, Mareike Wenning, Siegfried Scherer, Etienne V. Doll
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4774. CrossRef -
Flammeovirga pectinis sp. nov., isolated from the gut of the Korean scallop, Patinopecten yessoensis
Yun-Seok Jeong, Woorim Kang, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Na-Ri Shin, Hyun Sik Kim, So-Yeon Lee, Jeong Eun Han, Jae-Yun Lee, Euon Jung Tak, Pil Soo Kim, Dong-Wook Hyun, Mi-Ja Jung, Tae Woong Whon, Myung-Suk Kang, Ki-Eun Lee, Byoung-Hee Lee, Ji
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(1): 499. CrossRef - High counts of thermophilic spore formers in dairy powders originate from persisting strains in processing lines
Anna Dettling, Carolin Wedel, Christopher Huptas, Jörg Hinrichs, Siegfried Scherer, Mareike Wenning
International Journal of Food Microbiology.2020; 335: 108888. CrossRef - Paenibacillus lycopersici sp. nov. and Paenibacillus rhizovicinus sp. nov., isolated from the rhizosphere of tomato (Solanum lycopersicum)
Shin Ae Lee, Tae-Wan Kim, Jun Heo, Mee-Kyung Sang, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
Journal of Microbiology.2020; 58(10): 832. CrossRef -
Cerasibacillus terrae sp. nov., isolated from maize field, and emended description of Cerasibacillus quisquiliarum Nakamura et al. 2004
Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(11): 5725. CrossRef - Microbial community composition and functional potential in Bothnian Sea sediments is linked to Fe and S dynamics and the quality of organic matter
Olivia Rasigraf, Niels A. G. M. van Helmond, Jeroen Frank, Wytze K. Lenstra, Matthias Egger, Caroline P. Slomp, Mike S. M. Jetten
Limnology and Oceanography.2020;[Epub] CrossRef - Metagenomic Association Analysis of Gut Symbiont Limosilactobacillus reuteri Without Host-Specific Genome Isolation
Sein Park, Martin Steinegger, Ho-Seong Cho, Jongsik Chun
Frontiers in Microbiology.2020;[Epub] CrossRef - Methylobacterium symbioticum sp. nov., a new species isolated from spores of Glomus iranicum var. tenuihypharum
Jose Antonio Pascual, Margarita Ros, Jesus Martínez, Francisco Carmona, Antonio Bernabé, Rocío Torres, Teresa Lucena, Rosa Aznar, David R. Arahal, Felix Fernández
Current Microbiology.2020; 77(9): 2031. CrossRef -
Sphingomonas solaris sp. nov., isolated from a solar panel in Boston, Massachusetts
Kristie Tanner, Christopher P. Mancuso, Juli Peretó, Ahmad S. Khalil, Cristina Vilanova, Javier Pascual
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(3): 1814. CrossRef -
Adhaeribacter rhizoryzae sp. nov., a fibrillar matrix-producing bacterium isolated from the rhizosphere of rice plant
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Byungjo Lee, Wonhee Jang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5382. CrossRef - Genomic Comparison of Insect Gut Symbionts from Divergent Burkholderia Subclades
Kazutaka Takeshita, Yoshitomo Kikuchi
Genes.2020; 11(7): 744. CrossRef -
Duganella albus sp. nov., Duganella aquatilis sp. nov., Duganella pernnla sp. nov. and Duganella levis sp. nov., isolated from subtropical streams in China
Huibin Lu, Tongchu Deng, Feifei Liu, Yonghong Wang, Xunan Yang, Meiying Xu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(6): 3801. CrossRef - Description of Maribellus sediminis sp. nov., a marine nitrogen-fixing bacterium isolated from sediment of cordgrass and mangrove
Zhaobin Huang, Yuzhong Hu, Qiliang Lai, Yu Guo
Systematic and Applied Microbiology.2020; 43(4): 126099. CrossRef -
Ningiella ruwaisensis gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from marine water of the Arabian Gulf
Rashmi Fotedar, Matthew E. Caldwell, Krithivasan Sankaranarayanan, Aisha Al -Zeyara, Ameena Al-Malki, Ridhima Kaul, Masoud Al Marri, Hamad S. Al -Shamari, Paul A. Lawson
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4130. CrossRef -
Maribacter algicola sp. nov., isolated from a marine red alga, Porphyridium marinum, and transfer of Maripseudobacter aurantiacus Chen et al. 2017 to the genus Maribacter as Maribacter aurantiacus comb. nov.
Shehzad Abid Khan, Sang Eun Jeong, Ju Hye Baek, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(2): 797. CrossRef - In silico functional and evolutionary analyses of rubber oxygenases (RoxA and RoxB)
Vikas Sharma, Fauzul Mobeen, Tulika Prakash
3 Biotech.2020;[Epub] CrossRef - Improved Metagenomic Taxonomic Profiling Using a Curated Core Gene-Based Bacterial Database Reveals Unrecognized Species in the Genus Streptococcus
Mauricio Chalita, Sung-min Ha, Yeong Ouk Kim, Hyun-Seok Oh, Seok-Hwan Yoon, Jongsik Chun
Pathogens.2020; 9(3): 204. CrossRef -
Klebsiella indica sp. nov., isolated from the surface of a tomato
Sukriti Gujarati, Diptaraj Chaudhari, Ashwini Hagir, Mitesh Khairnar, Yogesh Shouche, Praveen Rahi
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3278. CrossRef -
Cupriavidus agavae sp. nov., a species isolated from Agave L. rhizosphere in northeast Mexico
Ivan Arroyo-Herrera, Jessica Maldonado-Hernández, Fernando-Uriel Rojas-Rojas, Georgina Meza-Radilla, Violeta Larios-Serrato, María-Soledad Vásquez-Murrieta, William B. Whitman, Paulina Estrada-de los Santos
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4165. CrossRef - Filimonas effusa sp. nov., isolated from a freshwater river
Wen-Ming Chen, Tzu-Ying Chen, Zhi-Hao Li, Soon-Wo Kwon, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology.2020; 70(3): 1508. CrossRef -
Duganella lactea sp. nov., Duganella guangzhouensis sp. nov., Duganella flavida sp. nov. and Massilia rivuli sp. nov., isolated from a subtropical stream in PR China and proposal to reclassify Duganella ginsengisoli as Massilia ginsengisoli c
Huibin Lu, Tongchu Deng, Feifei Liu, Yonghong Wang, Xunan Yang, Meiying Xu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4822. CrossRef - Genome-based reclassification of Paenibacillus jamilae Aguilera et al. 2001 as a later heterotypic synonym of Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994
Min-Jung Kwak, Seon-Bin Choi, Sung-min Ha, Eun Hye Kim, Byung-Yong Kim, Jongsik Chun
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3134. CrossRef - Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater
Shan-Hui Li, Jaeho Song, Ilnam Kang, Juchan Hwang, Jang-Cheon Cho
Journal of Microbiology.2020; 58(6): 463. CrossRef - Psychroflexus maritimus sp. nov., isolated from coastal sediment
Yan-Lin Zhong, Rui Zhang, Xiao-Yu Zhang, Li-Xue Yu, Meng-Fan Zhao, Zong-Jun Du
Archives of Microbiology.2020; 202(8): 2127. CrossRef - Ketobacter nezhaii sp. nov., a marine bacterium isolated from coastal sediment
Jianyang Li, Mingming Qi, Qiliang Lai, Xianhua Liu, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology.2020; 70(9): 4960. CrossRef -
Sphingobacterium chungjuense sp. nov., isolated from a freshwater lake
Jaeho Song, Yochan Joung, Shan-Hui Li, Juchan Hwang, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(12): 6126. CrossRef -
Paracoccus xiamenensis sp. nov., isolated from seawater on the Xiamen
Lina Lyu, Bin Zhi, Qiliang Lai, Zongze Shao, Zhiqiang Yu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4285. CrossRef - Paludisphaera soli sp. nov., a new member of the family Isosphaeraceae isolated from high altitude soil in the Western Himalaya
Rishabh Kaushik, Meesha Sharma, Kumar Gaurav, U. Jagadeeshwari, A. Shabbir, Ch. Sasikala, Ch. V. Ramana, Maharaj K. Pandit
Antonie van Leeuwenhoek.2020; 113(11): 1663. CrossRef - Lacibacter luteus sp. nov., isolated from a freshwater river
Shih-Yi Sheu, Tzu-Ying Chen, Soon-Wo Kwon, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2020; 70(2): 1404. CrossRef -
Flavobacterium ichthyis sp. nov., isolated from a fish pond
Wen-Ming Chen, Che-Chia Yang, Ceshing Sheu, Soon-Wo Kwon, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(9): 5075. CrossRef -
Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil
Ye Lin Seo, Shehzad Abid Khan, Hyung Min Kim, Byung Hee Chun, Dong Min Han, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(8): 4616. CrossRef -
Ferrimonas sediminicola sp. nov. and Ferrimonas aestuarii sp. nov., Fe(III)-reducing bacteria isolated from marine environments
Juchan Hwang, Jaeho Song, Yeonjung Lim, Yochan Joung, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(9): 4927. CrossRef -
Patiriisocius marinistellae gen. nov., sp. nov., isolated from the starfish Patiria pectinifera, and reclassification of Ulvibacter marinus as a member of the genus Patiriisocius comb. nov.
Keisuke Kawano, Natsumi Ushijima, Minoru Kihara, Hideomi Itoh
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4119. CrossRef - Integration of culture-dependent and independent methods provides a more coherent picture of the pig gut microbiome
Gavin J Fenske, Sudeep Ghimire, Linto Antony, Jane Christopher-Hennings, Joy Scaria
FEMS Microbiology Ecology.2020;[Epub] CrossRef -
Pseudomonas karstica sp. nov. and Pseudomonas spelaei sp. nov., isolated from calcite moonmilk deposits from caves
Pavel Švec, Marcel Kosina, Michal Zeman, Pavla Holochová, Stanislava Králová, Eva Němcová, Lenka Micenková, Urvashi, Vipin Gupta, Utkarsh Sood, Rup Lal, Suresh Korpole, Ivo Sedláček
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(9): 5131. CrossRef - Extremophilic nitrite-oxidizing Chloroflexi from Yellowstone hot springs
Eva Spieck, Michael Spohn, Katja Wendt, Eberhard Bock, Jessup Shively, Jeroen Frank, Daniela Indenbirken, Malik Alawi, Sebastian Lücker, Jennifer Hüpeden
The ISME Journal.2020; 14(2): 364. CrossRef -
Novosphingobium ovatum sp. nov., isolated from a freshwater mesocosm
Wen-Ming Chen, Cheng-Ye Cai, Der-Shyan Sheu, Jyh-Ming Tsai, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5243. CrossRef -
Sunxiuqinia indica sp. nov., isolated from deep sea
Jianyang Li, Mingming Qi, Qiliang Lai, Guangyi Wang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4186. CrossRef - Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds
Lingmin Jiang, Chan Ju Lim, Song-Gun Kim, Jae Cheol Jeong, Cha Young Kim, Dae-Hyuk Kim, Suk Weon Kim, Jiyoung Lee
Journal of Microbiology.2020; 58(1): 24. CrossRef -
Sphingorhabdus lacus sp. nov. and Sphingorhabdus profundilacus sp. nov., isolated from freshwater environments
Miri Park, Ilsuk Jung, Jaeho Song, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3202. CrossRef - Novosphingobium umbonatum sp. nov., isolated from a freshwater mesocosm
Shih-Yi Sheu, Cheng-Ye Cai, Soon-Wo Kwon, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2020; 70(2): 1122. CrossRef -
Pseudooceanicola pacificus sp. nov., isolated from deep-sea sediment of the Pacific Ocean
Lina Lyu, Qiliang Lai, Jianyang Li, Zongze Shao, Zhiqiang Yu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4372. CrossRef -
Halioglobus maricola sp. nov., isolated from coastal seawater
Shan-Hui Li, Jaeho Song, Yeonjung Lim, Yochan Joung, Ilnam Kang, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(3): 1868. CrossRef -
Cryobacterium ruanii sp. nov. and Cryobacterium breve sp. nov., isolated from glaciers
Qing Liu, Ji-Hui Tian, Hong-Can Liu, Yu-Guang Zhou, Yu-Hua Xin
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(3): 1918. CrossRef - Prokaryotic sigma factors and their transcriptional counterparts in Archaea and Eukarya
Ana G. Abril, Jose Luis R. Rama, A. Sánchez-Pérez, Tomás G. Villa
Applied Microbiology and Biotechnology.2020; 104(10): 4289. CrossRef -
Nitratireductor alexandrii sp. nov., from phycosphere microbiota of toxic marine dinoflagellate Alexandrium tamarense
Zhiwei Jiang, Yuhan Duan, Xi Yang, Bing Yao, Teer Zeng, Xiaoyan Wang, Qi Feng, Min Qi, Qiao Yang, Xiaoling Zhang
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4390. CrossRef -
Croceicoccus sediminis sp. nov., isolated from coastal sediment
Zhaobin Huang, Aoqiang Zhang, Qiliang Lai, Jianjun Yuan
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(2): 779. CrossRef - Signs of a phyllospheric lifestyle in the genome of the stress-tolerant strain Azospirillum brasilense Az19
Julia E. García, Maria M. Labarthe, Luciana A. Pagnussat, Melina Amenta, Cecilia M. Creus, Guillermo A. Maroniche
Systematic and Applied Microbiology.2020; 43(6): 126130. CrossRef - Genomic, metabolic and phenotypic variability shapes ecological differentiation and intraspecies interactions of Alteromonas macleodii
Hanna Koch, Nora Germscheid, Heike M. Freese, Beatriz Noriega-Ortega, Dominik Lücking, Martine Berger, Galaxy Qiu, Ezequiel M. Marzinelli, Alexandra H. Campbell, Peter D. Steinberg, Jörg Overmann, Thorsten Dittmar, Meinhard Simon, Matthias Wietz
Scientific Reports.2020;[Epub] CrossRef - Reinekea thalattae sp. nov., a New Species of the Genus Reinekea Isolated from Surface Seawater in Sehwa Beach
Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Minchung Kang, Taegun Seo
Current Microbiology.2020; 77(12): 4174. CrossRef - All ANIs are not created equal: implications for prokaryotic species boundaries and integration of ANIs into polyphasic taxonomy
Marike Palmer, Emma T. Steenkamp, Jochen Blom, Brian P. Hedlund, Stephanus N. Venter
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2937. CrossRef - Rhizobium indicum sp. nov., isolated from root nodules of pea (Pisum sativum) cultivated in the Indian trans-Himalayas
Praveen Rahi, Pranoti Giram, Diptaraj Chaudhari, George C. diCenzo, Shashi Kiran, Aastha Khullar, Mahima Chandel, Sayali Gawari, Anagha Mohan, Shraddha Chavan, Bhagyashree Mahajan
Systematic and Applied Microbiology.2020; 43(5): 126127. CrossRef - Nonlabens xiamenensis sp. nov., isolated from coastal seawater
Zhaobin Huang, Yaping Du, Qiliang Lai, Zongze Shao
Antonie van Leeuwenhoek.2019; 112(8): 1263. CrossRef - Amniculibacterium aquaticum gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from a stream
Wen-Ming Chen, Ya-Ping Guo, Ceshing Sheu, Shih-Yi Sheu
Archives of Microbiology.2019; 201(8): 1119. CrossRef - Discovery of a functional, contracted heme-binding motif within a multiheme cytochrome
Christina Ferousi, Simon Lindhoud, Frauke Baymann, Eric R. Hester, Joachim Reimann, Boran Kartal
Journal of Biological Chemistry.2019; 294(45): 16953. CrossRef -
Flavobacterium piscinae sp. nov., isolated from a fish pond
Wen-Ming Chen, Ya-Ping Guo, Soon-Wo Kwon, Shih-Yi Sheu
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(6): 1775. CrossRef - Description of Sphingobium psychrophilum sp. nov., a cold-adapted bacterium isolated from Arctic soil
Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - Uncultured Nitrospina-like species are major nitrite oxidizing bacteria in oxygen minimum zones
Xin Sun, Linnea F M Kop, Maggie C Y Lau, Jeroen Frank, Amal Jayakumar, Sebastian Lücker, Bess B Ward
The ISME Journal.2019; 13(10): 2391. CrossRef - Sphingomonas crocodyli sp. nov., isolated from a crocodile pond
Shih-Yi Sheu, Yi-Ru Xie, Soon-Wo Kwon, Ceshing Sheu, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2019; 69(7): 2153. CrossRef - N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist β-Mannosidase
Rosa Lorizolla Cordeiro, Renan Augusto Siqueira Pirolla, Gabriela Felix Persinoti, Fábio Cesar Gozzo, Priscila Oliveira de Giuseppe, Mario Tyago Murakami
Journal of Molecular Biology.2019; 431(4): 732. CrossRef - Identification of Molecular Markers That Are Specific to the Class Thermoleophilia
Danyu Hu, Yang Zang, Yingjin Mao, Beile Gao
Frontiers in Microbiology.2019;[Epub] CrossRef -
Neobacillus endophyticus sp. nov., an endophytic bacterium isolated from Selaginella involvens roots
Lingmin Jiang, Myoung Hui Lee, Jae Cheol Jeong, Dae-Hyuk Kim, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - Stagnimonas aquatica gen. nov., sp. nov., a new member of the family Nevskiaceae isolated from a freshwater mesocosm
Shih-Yi Sheu, Tzu-Ying Chen, Chiu-Chung Young, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2019; 69(6): 1606. CrossRef - Hydrocarboniclastica marina gen. nov., sp. nov., a marine hydrocarbonoclastic bacterium isolated from an in situ enriched hydrocarbon-degrading consortium in sea sediment
Chunming Dong, Tiantian Ma, Renju Liu, Qiliang Lai, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology.2019; 69(8): 2250. CrossRef -
Anaerosacchariphilus polymeriproducens gen. nov., sp. nov., an anaerobic bacterium isolated from a salt field
Wonduck Kim, Sung-Hyun Yang, Mi-Jeong Park, Jihye Oh, Jung-Hyun Lee, Kae Kyoung Kwon
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(7): 1934. CrossRef -
Flavobacterium baculatum sp. nov., a carotenoid and flexirubin-type pigment producing species isolated from flooded paddy field
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Minchung Kang, Byungjo Lee, Wonhee Jang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef -
Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi
Sang Eun Jeong, Kyung Hyun Kim, Duckhyun Lhee, Hwan Su Yoon, Zhe-Xue Quan, En-Young Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(7): 1967. CrossRef - Pradoshia eiseniae gen. nov., sp. nov., a spore-forming member of the family Bacillaceae capable of assimilating 3-nitropropionic acid, isolated from the anterior gut of the earthworm Eisenia fetida
Tilak Saha, Vivek K. Ranjan, Sriradha Ganguli, Subarna Thakur, Biswanath Chakraborty, Partha Barman, Wriddhiman Ghosh, Ranadhir Chakraborty
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- Vertical distribution of bacterial community is associated with the degree of soil organic matter decomposition in the active layer of moist acidic tundra
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Hye Min Kim , Min Jin Lee , Ji Young Jung , Chung Yeon Hwang , Mincheol Kim , Hee-Myong Ro , Jongsik Chun , Yoo Kyung Lee
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J. Microbiol. 2016;54(11):713-723. Published online October 29, 2016
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DOI: https://doi.org/10.1007/s12275-016-6294-2
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Abstract
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The increasing temperature in Arctic tundra deepens the
active layer, which is the upper layer of permafrost soil that
experiences repeated thawing and freezing. The increasing
of soil temperature and the deepening of active layer seem
to affect soil microbial communities. Therefore, information
on soil microbial communities at various soil depths is essential
to understand their potential responses to climate change
in the active layer soil. We investigated the community structure
of soil bacteria in the active layer from moist acidic tundra
in Council, Alaska. We also interpreted their relationship
with some relevant soil physicochemical characteristics along
soil depth with a fine scale (5 cm depth interval). The bacterial
community structure was found to change along soil
depth. The relative abundances of Acidobacteria, Gammaproteobacteria,
Planctomycetes, and candidate phylum WPS-2
rapidly decreased with soil depth, while those of Bacteroidetes,
Chloroflexi, Gemmatimonadetes, and candidate AD3 rapidly
increased. A structural shift was also found in the soil bacterial
communities around 20 cm depth, where two organic
(upper Oi and lower Oa) horizons are subdivided. The quality
and the decomposition degree of organic matter might
have influenced the bacterial community structure. Besides
the organic matter quality, the vertical distribution of bacterial
communities was also found to be related to soil pH and
total phosphorus content. This study showed the vertical
change of bacterial community in the active layer with a fine
scale resolution and the possible influence of the quality of soil
organic matter on shaping bacterial community structure.
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Citations
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- Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform
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Yoon-Seong Jeon , Sang-Cheol Park , Jeongmin Lim , Jongsik Chun , Bong-Soo Kim
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J. Microbiol. 2015;53(1):60-69. Published online January 4, 2015
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DOI: https://doi.org/10.1007/s12275-015-4601-y
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1,083
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Abstract
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The cost of DNA sequencing has decreased due to advancements
in Next Generation Sequencing. The number of sequences
obtained from the Illumina platform is large, use of
this platform can reduce costs more than the 454 pyrosequencer.
However, the Illumina platform has other challenges,
including bioinformatics analysis of large numbers
of sequences and the need to reduce erroneous nucleotides
generated at the 3-ends of the sequences. These erroneous
sequences can lead to errors in analysis of microbial communities.
Therefore, correction of these erroneous sequences
is necessary for accurate taxonomic identification. Several
studies that have used the Illumina platform to perform metagenomic
analyses proposed curating pipelines to increase
accuracy. In this study, we evaluated the likelihood of obtaining
an erroneous microbial composition using the MiSeq
250 bp paired sequence platform and improved the pipeline
to reduce erroneous identifications. We compared different
sequencing conditions by varying the percentage of control
phiX added, the concentration of the sequencing library, and
the 16S rRNA gene target region using a mock community
sample composed of known sequences. Our recommended
method
corrected erroneous nucleotides and improved identification
accuracy. Overall, 99.5% of the total reads shared
95% similarity with the corresponding template sequences
and 93.6% of the total reads shared over 97% similarity. This
indicated that the MiSeq platform can be used to analyze microbial
communities at the genus level with high accuracy.
The improved analysis method recommended in this study
can be applied to amplicon studies in various environments
using high-throughput reads generated on the MiSeq platform.
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- TBC: A Clustering Algorithm Based on Prokaryotic Taxonomy
-
Jae-Hak Lee , Hana Yi , Yoon-Seong Jeon , Sungho Won , Jongsik Chun
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J. Microbiol. 2012;50(2):181-185. Published online April 27, 2012
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DOI: https://doi.org/10.1007/s12275-012-1214-6
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785
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20
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Abstract
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High-throughput DNA sequencing technologies have revolutionized
the study of microbial ecology. Massive sequencing
of PCR amplicons of the 16S rRNA gene has been
widely used to understand the microbial community structure
of a variety of environmental samples. The resulting
sequencing reads are clustered into operational taxonomic
units that are then used to calculate various statistical indices
that represent the degree of species diversity in a given
sample. Several algorithms have been developed to perform
this task, but they tend to produce different outcomes.
Herein, we propose a novel sequence clustering algorithm,
namely Taxonomy-Based Clustering (TBC). This algorithm
incorporates the basic concept of prokaryotic taxonomy in
which only comparisons to the type strain are made and used
to form species while omitting full-scale multiple sequence
alignment. The clustering quality of the proposed method was
compared with those of MOTHUR, BLASTClust, ESPRITTree,
CD-HIT, and UCLUST. A comprehensive comparison
using three different experimental datasets produced by
pyrosequencing demonstrated that the clustering obtained
using TBC is comparable to those obtained using MOTHUR
and ESPRIT-Tree and is computationally efficient. The program
was written in JAVA and is available from http://sw.
ezbiocloud.net/tbc.
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Citations
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Frontiers in Nutrition.2018;[Epub] CrossRef - hc-OTU: A Fast and Accurate Method for Clustering Operational Taxonomic Units Based on Homopolymer Compaction
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Chae Haeng Park, Kyung Mo Kim, Arve Elvebakk, Ok‐Sun Kim, Gajin Jeong, Soon Gyu Hong
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Environmental Microbiology.2014; 16(6): 1566. CrossRef - Bacterial community of sediments from the Australian-Antarctic ridge
Yung Mi Lee, Doshik Hahm, You-Jung Jung, Sung Hyun Park, Jongsik Chun, Soon Gyu Hong
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Sokhee Philemon Jung, Youngwook Cheong, Giljae Yim, Sangwoo Ji, Hojeong Kang
Environmental Science and Pollution Research.2014; 21(5): 3722. CrossRef - Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations
Ali May, Sanne Abeln, Wim Crielaard, Jaap Heringa, Bernd W. Brandt
Bioinformatics.2014; 30(11): 1530. CrossRef - Clinical Microbiology Informatics
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Clinical Microbiology Reviews.2014; 27(4): 1025. CrossRef - Endophytic bacterial diversity of an Antarctic moss, Sanionia uncinata
Mira Park, Hyoungseok Lee, Soon Gyu Hong, Ok-Sun Kim
Antarctic Science.2013; 25(1): 51. CrossRef - A Unique Prokaryotic Assemblage of Wall Biofilm of a Volcanic Cave (Daesubee) in Jeju
Jong-Geun Moon, Man-Young Jung, Jong-Geol Kim, Soo-Je Park, Dae-Shin Kim, Jong-Shik Kim, Sung-Keun Rhee
The Korean Journal of Microbiology.2013; 49(2): 184. CrossRef - Resolving Ambiguity of Species Limits and Concatenation in Multilocus Sequence Data for the Construction of Phylogenetic Supermatrices
Douglas Chesters, Alfried P. Vogler
Systematic Biology.2013; 62(3): 456. CrossRef - CLUSTOM: A Novel Method for Clustering 16S rRNA Next Generation Sequences by Overlap Minimization
Kyuin Hwang, Jeongsu Oh, Tae-Kyung Kim, Byung Kwon Kim, Dong Su Yu, Bo Kyeng Hou, Gustavo Caetano-Anollés, Soon Gyu Hong, Kyung Mo Kim, George E. Fox
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Mincheol Kim, Ki-Hyun Lee, Seok-Whan Yoon, Bong-Soo Kim, Jongsik Chun, Hana Yi
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Eun Soo Noh, Young-Sam Kim, Dong-Hyun Kim, Kyoung-Ho Kim
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Ok-Sun Kim, Namyi Chae, Hyun Soo Lim, Ahnna Cho, Jeong Hoon Kim, Soon Gyu Hong, Jeongsu Oh
Journal of Microbiology.2012; 50(6): 1081. CrossRef
- Comparative Approach to Capture Bacterial Diversity of Coastal Waters
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Hyunsoo Na , Ok-Sun Kim , Seok-Hwan Yoon , Yunmin Kim , Jongsik Chun
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J. Microbiol. 2011;49(5):729-740. Published online November 9, 2011
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DOI: https://doi.org/10.1007/s12275-011-1205-z
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Abstract
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Despite the revolutionary advancements in DNA sequencing technology and cultivation techniques, few studies have been done to directly compare these methods. In this study, a 16S rRNA gene-based, integrative approach combining culture-independent techniques with culture-dependent methods was taken to investigate the bacterial community structure of coastal seawater collected from the Yellow Sea, Korea. For culture-independent studies, we used the latest model pyrosequencer, Roche/454 Genome Sequencer FLX Titanium. Pyrosequencing captured a total of 52 phyla including 27 candidate divisions from the water column, whereas the traditional cloning approach captured only 15 phyla including 2 candidate divisions. In addition, of 878 genera retrieved, 92.1% of the sequences were unique to pyrosequencing. For culture-dependent analysis, plate culturing, plate washing, enrichment, and high-throughput culturing (HTC) methods were applied. Phylogenetic analysis showed that the plate-washing clones formed a cluster devoid of any previously cultured representatives within the family Rhodobacteraceae. One HTC isolate (SF293) fell into the OM182 clade, which was not recovered by other culturing methods described here. By directly comparing the sequences obtained from cultures with those from culture-independent work, we found that only 33% of the culture sequences were identical to those from clone libraries and pyrosequences. This study presents a detailed comparison of common molecular and cultivation techniques available in microbial ecology. As different methods yielded different coverage, we suggest choosing the approach after carefully examining the scientific questions being asked.
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Citations
Citations to this article as recorded by - Insights into Bacterial Community Structure and Metabolic Diversity of Mercury-Contaminated Sediments from Hyeongsan River, Pohang, South Korea
Dhiraj Kumar Chaudhary, Kyung Hee Kim, Mikyung Lee, Hwansuk Kim, Yongseok Hong
Current Microbiology.2022;[Epub] CrossRef - Microbial community niches on microplastics and prioritized environmental factors under various urban riverine conditions
Hien Thi Nguyen, Woodan Choi, Eun-Ju Kim, Kyungjin Cho
Science of The Total Environment.2022; 849: 157781. CrossRef - Abundance, community structure and diversity of nitrifying bacterial enrichments from low and high saline brackishwater environments
P.K. Patil, V. Baskaran, T.‐N. Vinay, S. Avunje, M. Leo‐Antony, M.S. Shekhar, S.V. Alavandi, K.K. Vijayan
Letters in Applied Microbiology.2021; 73(1): 96. CrossRef - Are all faecal bacteria detected with equal efficiency? A study using next-generation sequencing and quantitative culture of infants' faecal samples
Fei Sjöberg, Intawat Nookaew, Shora Yazdanshenas, Monica Gio-Batta, Ingegerd Adlerberth, Agnes E. Wold
Journal of Microbiological Methods.2020; 177: 106018. CrossRef - Compositional Shifts of Bacterial Communities Associated With Pyropia yezoensis and Surrounding Seawater Co-occurring With Red Rot Disease
Yong-Wei Yan, Hui-Chao Yang, Lei Tang, Jie Li, Yun-Xiang Mao, Zhao-Lan Mo
Frontiers in Microbiology.2019;[Epub] CrossRef - Genomic profiling of four cultivated Candidatus Nitrotoga spp. predicts broad metabolic potential and environmental distribution
Andrew M Boddicker, Annika C Mosier
The ISME Journal.2018; 12(12): 2864. CrossRef - Enrichment and Physiological Characterization of a Cold-Adapted Nitrite-Oxidizing Nitrotoga sp. from an Eelgrass Sediment
Kento Ishii, Hirotsugu Fujitani, Kentaro Soh, Tatsunori Nakagawa, Reiji Takahashi, Satoshi Tsuneda, Volker Müller
Applied and Environmental Microbiology.2017;[Epub] CrossRef - Comparison of Fecal Microbial Composition and Antibiotic Resistance Genes from Swine, Farm Workers and the Surrounding Villagers
Jian Sun, Ting Huang, Chong Chen, Ting-Ting Cao, Ke Cheng, Xiao-Ping Liao, Ya-Hong Liu
Scientific Reports.2017;[Epub] CrossRef - Pseudomaricurvus alcaniphilus sp. nov., a marine bacterium isolated from tidal flat sediment and emended descriptions of the genus Pseudomaricurvus, Pseudomaricurvus alkylphenolicus Iwaki et al. 2014 and Maricurvus nonylphenolicus Iwaki et al. 2012
Hyun-Seok Seo, Sung-Hyun Yang, Ji Hye Oh, Jung-Hyun Lee, Kae Kyoung Kwon
International Journal of Systematic and Evolutionary Microbiology.2015; 65(Pt_10): 3591. CrossRef -
Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants
Sebastian Lücker, Jasmin Schwarz, Christiane Gruber-Dorninger, Eva Spieck, Michael Wagner, Holger Daims
The ISME Journal.2015; 9(3): 708. CrossRef - Seasonal Variations in the Bacterial Community of Gwangyang Bay Seawater
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Minako Nishiyama, Shuichi Yamamoto, Norio Kurosawa
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Mira Park, Hyoungseok Lee, Soon Gyu Hong, Ok-Sun Kim
Antarctic Science.2013; 25(1): 51. CrossRef - Microbial communities in low permeability, high pH uranium mine tailings: characterization and potential effects
V.F. Bondici, J.R. Lawrence, N.H. Khan, J.E. Hill, E. Yergeau, G.M. Wolfaardt, J. Warner, D.R. Korber
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Ok-Sun Kim, Namyi Chae, Hyun Soo Lim, Ahnna Cho, Jeong Hoon Kim, Soon Gyu Hong, Jeongsu Oh
Journal of Microbiology.2012; 50(6): 1081. CrossRef
- rRNASelector: A Computer Program for Selecting Ribosomal RNA Encoding Sequences from Metagenomic and Metatranscriptomic Shotgun Libraries
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Jae-Hak Lee , Hana Yi , Jongsik Chun
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J. Microbiol. 2011;49(4):689-691. Published online September 2, 2011
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DOI: https://doi.org/10.1007/s12275-011-1213-z
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665
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29
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Abstract
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Metagenomic and metatranscriptomic shotgun sequencing techniques are gaining popularity as more cost-effective
next-generation sequencing technologies become commercially available. The initial stage of bioinformatic
analysis generally involves the identification of phylogenetic markers such as ribosomal RNA genes.
The sequencing reads that do not code for rRNA can then be used for protein-based analysis. Hidden Markov
model is a well-known method for pattern recognition. Hidden Markov models that are trained on well-curated
rRNA sequence databases have been successfully used to identify DNA sequence coding for rRNAs in prokaryotes.
Here, we introduce rRNASelector, which is a computer program for selecting rRNA genes from
massive metagenomic and metatranscriptomic sequences using hidden Markov models. The program successfully
identified prokaryotic 5S, 26S, and 23S rRNA genes from Roche 454 FLX Titanium-based metagenomic and
metatranscriptomic libraries. The rRNASelector program is available at http://sw.ezbiocloud.net/rrnaselector.
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Citations
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- Assessment of Soil Fungal Communities Using Pyrosequencing
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Young Woon Lim , Byung Kwon Kim , Changmu Kim , Hack Sung Jung , Bong-Soo Kim , Jae-Hak Lee , Jongsik Chun
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J. Microbiol. 2010;48(3):284-289. Published online June 23, 2010
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DOI: https://doi.org/10.1007/s12275-010-9369-5
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681
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Abstract
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Pyrosequencing, a non-electrophoretic method of DNA sequencing, was used to investigate the extensive fungal community in soils of three islands in the Yellow Sea of Korea, between Korea and China. Pyrosequencing was carried out on amplicons derived from the 5′ region of 18S rDNA. A total of 10,166 reads were obtained, with an average length of 103 bp. The maximum number of fungal phylotypes in soil predicted at 99% similarity was 3,334. The maximum numbers of phylotypes predicted at 97% and 95% similarities were 736 and 286, respectively. Through phylogenetic assignment using BLASTN, a total of 372 tentative taxa
were identified. The majority of true fungal sequences recovered in this study belonged to the Ascomycota (182 tentative taxa in 2,708 reads) and Basidiomycota (172 tentative taxa in 6,837 reads). The predominant species of Ascomycota detected have been described as lichen-forming fungi, litter/wood decomposers, plant
parasites, endophytes, and saprotrophs: Peltigera neopolydactyla (Lecanoromycetes), Paecilomyces sp. (Sordariomycetes), Phacopsis huuskonenii (Lecanoromycetes), and Raffaelea hennebertii (mitosporic Ascomycota). The majority of sequences in the Basidiomycota matched ectomycorrhizal and wood rotting fungi, including species of the Agaricales and Aphyllophorales, respectively. A high number of sequences in the Thelephorales, Boletales, Stereales, Hymenochaetales, and Ceratobasidiomycetes were also detected. By
applying high-throughput pyrosequencing, we observed a high diversity of soil fungi and found evidence that pyrosequencing is a reliable technique for investigating fungal communities in soils.
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- Designing Primers from Multiple Sequences Using Matchup Program to Improve Detection of Hepatitis B Virus by Polymerase Chain Reaction
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So Young Jang , Mi Suk Kim , Min Seok Park , Keon Myung Lee , Hwan Won Chung , Jongsik Chun , Chan Hee Lee
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J. Microbiol. 2010;48(1):111-116. Published online March 11, 2010
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DOI: https://doi.org/10.1007/s12275-009-0282-8
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Traditionally primers for PCR detection of viruses have been selected from genomic sequence of single or representative viral strain. However, high mutation rate of viral genomes often results in failure in detecting viruses in clinical and environmental samples. Thus, it seems necessary to consider primers designed from multiple viral sequences in order to improve detection of viral variants. Matchup is a program intended to select universal primers from multiple sequences. We designed using Matchup program primer pairs for HBV detection from 691 full genomic HBV DNA sequences available from NCBI GenBank database. Thousands of primer candidates were initially extracted and these were sequentially filtered down to 5 primer pairs. These primer pairs were tested by PCR using 5 HBV Korean HBsAg(+) patient sera, and eventually one universal primer pair was selected and named MUW (multiple-universal-worldwide). This primer pair, 3 HBV reference primer pairs reported by others and 1 commercial primer pair were compared using 86 HBV
HBsAg(+) sera from Korean and Vietnamese patients. The detection rate for MUW primer pair was 72.1%, much greater than those obtained by reference and commercial primers (32.5 to 40.7%). The superiority of MUW primer pair appeared to be correlated with the conserved sequences of the forward primer binding sites and primer quality score. These results suggest that the universal primers designed by the Matchup program from multiple sequences could be useful in detecting viruses from clinical samples.
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Citations
Citations to this article as recorded by - Development of a new duplex real-time polymerase chain reaction assay for hepatitis B viral DNA detection
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Je Hee Lee , Seon Young Choi , Yoon-Seong Jeon , Hye Ri Lee , Eun Jin Kim , Binh Minh Nguyen , Nguyen Tran Hien , M. Ansaruzzaman , M. Sirajul Islam , Nurul A. Bhuiyan , S.K. Niyogi , B.L. Sarkar , G. Balakrish Nair , Dae Shick Kim , Anna Lena Lopez , Cecil Czerkinsky , John D. Clemens , Jongsik Chun , Dong Wook Kim
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J. Microbiol. 2009;47(6):783-788. Published online February 4, 2010
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DOI: https://doi.org/10.1007/s12275-009-0292-6
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Analysis of the CTX prophage and RS1 element in hybrid and altered Vibrio cholera O1 strains showed two classifiable groups. Group I strains contain a tandem repeat of classical CTX prophage on the small chromosome. Strains in this group either contain no element(s) or an additional CTX prophage or RS1 element(s) on the large chromosome. Group II strains harbor RS1 and CTX prophage, which has an El Tor type rstR and classical ctxB on the large chromosome.
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- Identification and Characterization of Metagenomic Fragments from Tidal Flat Sediment
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Byung Kwon Kim , Yoon-Dong Park , Hyun-Myung Oh , Jongsik Chun
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J. Microbiol. 2009;47(4):402-410. Published online September 9, 2009
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DOI: https://doi.org/10.1007/s12275-009-0099-5
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Abstract
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Phylogenetic surveys based on cultivation-independent methods have revealed that tidal flat sediments are environments with extensive microbial diversity. Since most of prokaryotes in nature cannot be easily cultivated under general laboratory conditions, our knowledge on prokaryotic dwellers in tidal flat sediment is mainly based on the analysis of metagenomes. Microbial community analysis based on the 16S rRNA gene and other phylogenetic markers has been widely used to provide important information on the role of microorganisms, but it is basically an indirect means, compared with direct sequencing of metagenomic DNAs. In this study, we applied a sequence-based metagenomic approach to characterize uncultivated prokaryotes from tidal flat sediment. Two large-insert genomic libraries based on fosmid were constructed from tidal flat metagenomic DNA. A survey based on end-sequencing of selected fosmid clones resulted in the identification of clones containing 274 bacterial and 16 archaeal homologs in which majority were of proteobacterial origins. Two fosmid clones containing large metagenomic DNAs were completely sequenced using the shot- gun method. Both DNA inserts contained more than 20 genes encoding putative proteins which implied their ecological roles in tidal flat sediment. Phylogenetic analyses of evolutionary conserved proteins indicate that these clones are not closely related to known prokaryotes whose genome sequence is known, and genes in tidal flat may be subjected to extensive lateral gene transfer, notably between domains Bacteria and Archaea. This is the first report demonstrating that direct sequencing of metagenomic gene library is useful in underpinning the genetic makeup and functional roles of prokaryotes in tidal flat sediments.
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- Diversity of Bacterial Community in Freshwater of Woopo Wetland
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Keun Sik Baik , Seong Chan Park , Eun Mi Kim , Kyung Sook Bae , Jae-Hyung Ahn , Jong-Ok Ka , Jongsik Chun , Chi Nam Seong
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J. Microbiol. 2008;46(6):647-655. Published online December 24, 2008
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DOI: https://doi.org/10.1007/s12275-008-0135-x
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672
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24
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Abstract
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Diversity of bacterial community in water layer of Woopo wetland was investigated. Cultivable bacterial strains were isolated by the standard dilution plating technique and culture-independent 16S rRNA gene clones were obtained directly from DNA extracts of a water sample. Amplified rDNA restriction analysis (ARDRA) was applied onto both of the isolates and 16S rRNA gene clones. Rarefaction curves, coverage rate and diversity indices of ARDRA patterns were calculated. Representative isolates and clones of all the single isolate/clone phylotype were partially sequenced and analyzed phylogenetically. Sixty-four and 125 phylotypes were obtained from 203 bacterial isolates and 235 culture-independent 16S rRNA gene clones, respectively. Bacterial isolates were composed of 4 phyla, of which Firmicutes (49.8%) and Actinobacteria (32.0%) were predominant. Isolates were affiliated with 58 species. Culture-independent 16S rRNA gene clones were composed of 8 phyla, of which Proteobacteria (62.2%), Actinobacteria (15.5%), and Bacteroidetes (13.7%) were predominant. Diversity of 16S rRNA gene clones originated from cultivation-independent DNA extracts was higher than that of isolated bacteria.
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Citations
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- Rapid Phylogenetic Dissection of Prokaryotic Community Structure in Tidal Flat Using Pyrosequencing
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Bong-Soo Kim , Byung Kwon Kim , Jae-Hak Lee , Myungjin Kim , Young Woon Lim , Jongsik Chun
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J. Microbiol. 2008;46(4):357-363. Published online August 31, 2008
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DOI: https://doi.org/10.1007/s12275-008-0071-9
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856
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Abstract
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Dissection of prokaryotic community structure is prerequisite to understand their ecological roles. Various methods are available for such a purpose which amplification and sequencing of 16S rRNA genes gained its popularity. However, conventional methods based on Sanger sequencing technique require cloning process prior to sequencing, and are expensive and labor-intensive. We investigated prokaryotic community structure in tidal flat sediments, Korea, using pyrosequencing and a subsequent automated bioinformatic pipeline for the rapid and accurate taxonomic assignment of each amplicon. The combination of pyrosequencing and bioinformatic analysis showed that bacterial and archaeal communities were more diverse than previously reported in clone library studies. Pyrosequencing analysis revealed 21 bacterial divisions and 37 candidate divisions. Proteobacteria was the most abundant division in the bacterial community, of which Gammaand Delta-Proteobacteria were the most abundant. Similarly, 4 archaeal divisions were found in tidal flat sediments. Euryarchaeota was the most abundant division in the archaeal sequences, which was further divided into 8 classes and 11 unclassified euryarchaeota groups. The system developed here provides a simple, in-depth and automated way of dissecting a prokaryotic community structure without extensive pretreatment such as cloning.
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Gordon Webster, Joachim Rinna, Erwan G. Roussel, John C. Fry, Andrew J. Weightman, R. John Parkes
FEMS Microbiology Ecology.2010; 72(2): 179. CrossRef - Discovery of commonly existing anode biofilm microbes in two different wastewater treatment MFCs using FLX Titanium pyrosequencing
Tae Kwon Lee, Tuan Van Doan, Kyuseon Yoo, Soojung Choi, Changwon Kim, Joonhong Park
Applied Microbiology and Biotechnology.2010; 87(6): 2335. CrossRef - Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
Seong Woon Roh, Kyoung-Ho Kim, Young-Do Nam, Ho-Won Chang, Eun-Jin Park, Jin-Woo Bae
The ISME Journal.2010; 4(1): 1. CrossRef - Assessment of soil fungal communities using pyrosequencing
Young Woon Lim, Byung Kwon Kim, Changmu Kim, Hack Sung Jung, Bong-Soo Kim, Jae-Hak Lee, Jongsik Chun
The Journal of Microbiology.2010; 48(3): 284. CrossRef - Identification and characterization of metagenomic fragments from tidal flat sediment
Byung Kwon Kim, Yoon-Dong Park, Hyun-Myung Oh, Jongsik Chun
The Journal of Microbiology.2009; 47(4): 402. CrossRef - The seasonal structure of microbial communities in the Western English Channel
Jack A. Gilbert, Dawn Field, Paul Swift, Lindsay Newbold, Anna Oliver, Tim Smyth, Paul J. Somerfield, Sue Huse, Ian Joint
Environmental Microbiology.2009; 11(12): 3132. CrossRef
- Thalassobius aestuarii sp. nov., Isolated from Tidal Flat Sediment
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Hana Yi , Jongsik Chun
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J. Microbiol. 2006;44(2):171-176.
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DOI: https://doi.org/2368 [pii]
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Abstract
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A strictly aerobic, non-motile, ovoid-shaped Alphaproteobacteria, designated strain JC2049T,was isolated from a tidal flat sediment sample. The results of 16S rRNA gene sequence analysis indicated that this isolate belonged to the genus Thalassobius, with a sequence similarity of 96.9-97.3% to other valid Thalassobius spp. The cells required 1-7% NaCl for growth (optimum 2%) and accumulated poly-β-hydroxybutyrate. Nitrite was reduced to nitrogen, but nitrate was not reduced to nitrite. No genetic potential for aerobic anoxygenic photosynthesis was detected. The primary isoprenoid quinone (Ubiquinone-10), predominant cellular fatty acids (C18:1ω7c, 11 methyl C18:1ω7c and C16:0) and DNA G+C content (61 mol%) were all consistent with the assignment of this isolate to the genus Thalassobius. Several phenotypic characteristics clearly distinguished our isolate from other Thalassobius species. The degree of genomic relatedness between strain JC2049T and other Thalassobius species was in a range of 20-43%. The polyphasic data presented in this study indicates that our isolate should be classified as a novel species within the genus Thalassobius. The name Thalassobius aestuarii sp. nov. is therefore proposed for this isolate; the type strain is JC2049T (= IMSNU 14011T = KCTC 12049T = DSM 15283T).
- Archaeal Diversity in Tidal Flat Sediment as Revealed by 16S rDNA Analysis
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Bong-Soo Kim , Huyn-Myung Oh , Hojeong Kang , Jongsik Chun
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J. Microbiol. 2005;43(2):144-151.
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DOI: https://doi.org/2170 [pii]
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Abstract
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During the past ten years, Archaea have been recognized as a widespread and significant component of marine picoplankton assemblages. More recently, the presence of novel archaeal phylogenetic lineages has been discovered in coastal marine environments, freshwater lakes, polar seas, and deep-sea hydrothermal vents. Therefore, we conducted an investigation into the archaeal community existing in tidal flat sediment collected from Ganghwa Island, Korea. Phylogenetic analysis of archaeal 16S rDNA amplified directly from tidal flat sediment DNA revealed the presence of two major lineages, belonging to the Crenarchaeota (53.9%) and Euryarchaeota (46.1%) phyla. A total of 102 clones were then sequenced and analyzed by comprehensive phylogenetic analysis. The sequences determined in our samples were found to be closely related to the sequences of clones which had been previously obtained from a variety of marine environments. Archaeal clones exhibited higher similarities (83.25 - 100%) to sequences from other environments in the public database than did those (75.22 - 98.46%) of previously reported bacterial clones obtained from tidal flat sediment. The results of our study suggest that the archaeal community in tidal flat sediment is remarkably diverse.
- A Method for Comparing Multiple Bacterial Community Structures from 16S rDNA Clone Library Sequences
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Inae Hur , Jongsik Chun
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J. Microbiol. 2004;42(1):9-13.
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DOI: https://doi.org/2008 [pii]
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Abstract
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Culture-independent approaches, based on 16S rDNA sequences, are extensively used in modern microbial ecology. Sequencing of the clone library generated from environmental DNA has advantages over fingerprint-based methods, such as denaturing gradient gel electrophoresis, as it provides precise identification and quantification of the phylotypes present in samples. However, to date, no method exists for comparing multiple bacterial community structures using clone library sequences. In this study, an automated method to achieve this has been developed, by applying pair wise alignment, hierarchical clustering and principle component analysis. The method has been demonstrated to be successful in comparing samples from various environments. The program, named CommCluster, was written in JAVA, and is now freely available, at http://chunlab.snu.ac.kr/commcluster/.
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