- Patterns and drivers of Vibrio isolates phylogenetic diversity in the Beibu Gulf, China
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Xing Chen , Hong Du , Si Chen , Xiaoli Li , Huaxian Zhao , Qiangsheng Xu , Jinli Tang , Gonglingxia Jiang , Shuqi Zou , Ke Dong , Jonathan M. Adams , Nan Li , Chengjian Jiang
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J. Microbiol. 2020;58(12):998-1009. Published online October 23, 2020
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DOI: https://doi.org/10.1007/s12275-020-0293-z
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Members of the genus Vibrio are ubiquitous in aquatic environments
and can be found either in a culturable or a viable
but nonculturable (VBNC) state. Despite widespread concerns
as to how to define the occurrence and dynamics of
Vibrio populations by culture-independent approaches, further
physiological research and relevant biotechnological
developments will require the isolation and cultivation of the
microbes from various environments. The present work provides
data and perspectives on our understanding of culturable
Vibrio community structure and diversity in the Beibu
Gulf. Finally, we isolated 1,037 strains of Vibrio from 45 samples
and identified 18 different species. Vibrio alginolyticus,
V. cyclitrophicus, V. tasmaniensis, V. brasiliensis, and V. splendidus
were the dominant species that had regional distribution
characteristics. The correlation between the quantitative
distribution and community structure of culturable Vibrio and
environmental factors varied with the Vibrio species and geographical
locations. Among them, salinity, nitrogen, and phosphorus
were the main factors affecting the diversity of culturable
Vibrio. These results help to fill a knowledge gap on
Vibrio diversity and provide data for predicting and controlling
pathogenic Vibrio outbreaks in the Beibu Gulf.
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Citations
Citations to this article as recorded by  - Environmental factors that regulate Vibrio spp. abundance and community structure in tropical waters
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- Bacterial Diversity in the Mountains of South-West China: Climate Dominates Over Soil Parameters
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Dharmesh Singh , Lingling Shi , Jonathan M. Adams
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J. Microbiol. 2013;51(4):439-447. Published online August 30, 2013
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DOI: https://doi.org/10.1007/s12275-013-2446-9
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754
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Certain patterns in soil bacterial diversity and community composition have become evident from metagenomics studies on a range of scales, from various parts of the world. For example, soil pH has generally been seen as dominating variation in bacterial diversity, above all other soil and climate parameters. It is important however to test the generality of these relationships by studying previously unsampled areas. We compared soil bacterial diversity and community composition under a wide range of climatic and edaphic conditions in mountainous Yunnan Province, SW China. Soil samples were taken from a range of primary forest types and altitudes, reflecting the great variation of forest environments in this region. From each soil sample, DNA was extracted and pyrosequenced for bacterial 16S rRNA gene identification. In contrast to other recent studies from other parts of the world, pH was a weaker predictor of bacterial community composition and diversity than exchangeable Ca2+ concentration, and also the more poorly defined >environmental parameter of elevation. Samples from within each forest type clustered strongly, showing the distinctive pattern of their microbial communities on a regional scale. It is clear that on a regional scale in a very heterogeneous environment, additional factors beyond pH can emerge as more important in determining bacterial diversity.
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