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Jing Sun 4 Articles
Diluted conventional media improve the microbial cultivability from aquarium seawater
Jing Sun , Jiazhen Guo , Qian Yang , Jie Huang
J. Microbiol. 2019;57(9):759-768.   Published online August 3, 2019
DOI: https://doi.org/10.1007/s12275-019-9175-7
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  • 16 Web of Science
  • 15 Crossref
AbstractAbstract PDF
The cultivation of microbial species remains a primary challenge in microbiology and obtaining pure cultures is essential for the study of microbial physiology and function. When isolating microorganisms from aquaculture environments, Vibrio are the most dominate isolates on the media that are commonly used. In order to expand our ability to study microbial species, an easy-operation and low-cost medium that can reduce the interference of Vibrio strains and increase the cultivability of other bacteria is urgently needed. We compared viable cell counts on conventional media (CM; including Marine Agar 2216 and LB media) and diluted media (DM; including 1/10-Marine Agar 2216, 1/10-LB). We also assessed the diversity of cultivable microorganisms under high and low nutrient conditions by a plate-wash strategy coupled with high-throughput sequencing of the V4 hypervariable region of the 16S rRNA gene. The results show that microbial communities from DM, especially 1/10-Marine Agar 2216, are more diverse than those obtained from CM. Vibrio isolates were reduced on DM. PICRUSt analysis revealed that nutrient composition is a significant contributor to the diversity and function of the cultivable microbial communities. Bacteria grown on CM possess more pathogenic characteristics, whereas DM favors the growth of bacteria that have multiple metabolic functions. Collectively, our data provide strong evidence that dilution of CM influences the cultivability of bacteria from aquaculture seawater. It also supports that DM can expand the range of microbial species that can be cultivated. This study also provides insights for media design in microbial cultivation from aquaculture systems.

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  • Metagenomic insights into salinity-driven plasticity of the shrimp gut microbiome and its resistome
    Xueqin Yang, Xiuli Chen, Min Peng, Yongzhen Zhao, Xia Wang
    Aquaculture.2027; 626: 744449.     CrossRef
  • In vitro domestication of halophyte microbiota for future SynCom application
    Nada A. Moner, Tarek R. Elsayed, Wafaa M. Amer, Mervat A. Hamza, Hanan H. Youssef, Randa M. Abdel-Fatah, Mahmoud S. Abdelwahab, Omar M. Shahat, Gehan H. Youssef, Mahmoud El-Tahan, Mohamed Fayez, Florian Fricke, Silke Ruppel, Nabil A. Hegazi
    Plant and Soil.2026; 523(2): 947.     CrossRef
  • Use of metabarcoding detects the rapid onset of cultivation bias in the culture-based profiling of marine sediment bacterial communities
    Seokwoo Jo, Hyun-Gwan Lee, Dong-Ha Nam, Chungoo Park
    Letters in Applied Microbiology.2026;[Epub]     CrossRef
  • Comparison of methods for the enumeration of heterotrophic bacteria in seawater from the Adriatic Sea: Implications for aquaculture
    Damir Kapetanović, Arijana Cenov, Dražen Lušić, Brigita Novosel, Darija Vukić Lušić
    Estuarine, Coastal and Shelf Science.2026; 336: 109825.     CrossRef
  • Isolation and Identification of PHA-Producing Haloalkaliphilic Bacteria from Bledug Kesongo Mud Volcano
    Anto Budiharjo, Isnanda Danur Nugroho, Wijanarka Wijanarka, Dyah Wulandari, Mukhammad Asy'ari
    Biointerface Research in Applied Chemistry.2026;[Epub]     CrossRef
  • Heterologous Expression and Functional Analysis of Exiguobacterium Algin Lyase Gene by Pichia pastoris
    Hanwen Wu, Kai Hou, Yutong Jiang, Mingjian Luan, Yuxia Sun, Xi He, Xiangzhong Zhao
    Fermentation.2025; 11(1): 34.     CrossRef
  • Microbial diversity and ecological roles of halophilic microorganisms in Dingbian (Shaanxi, China) saline-alkali soils and salt lakes
    Yue Ding, Juntao Ke, Tao Hong, Aodi Zhang, Xue Wu, Xinran Jiang, Shilong Shao, Ming Gong, Shengda Zhao, Liang Shen, Shaoxing Chen
    BMC Microbiology.2025;[Epub]     CrossRef
  • Unexpected methane oxidation acceleration by two species of bacteria from the rainwater promoting Methylomonas sp. in the soil
    Yuxuan Sang, Jia Tang, Oumei Wang, Qinqin Hao, Shiling Zheng, Fanghua Liu
    Journal of Environmental Chemical Engineering.2024; 12(5): 113895.     CrossRef
  • Glucose addition improves the culture performance of Pacific white shrimp by regulating the assembly of Rhodobacteraceae taxa in gut bacterial community
    Pengsheng Dong, Haipeng Guo, Lei Huang, Demin Zhang, Kai Wang
    Aquaculture.2023; 567: 739254.     CrossRef
  • Reaching unreachables: Obstacles and successes of microbial cultivation and their reasons
    Gabriela Kapinusova, Marco A. Lopez Marin, Ondrej Uhlik
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • The Metabolomics Changes in Luria–Bertani Broth Medium under Different Sterilization Methods and Their Effects on Bacillus Growth
    Haifeng Wang, Juan Guo, Xing Chen, Hongxuan He
    Metabolites.2023; 13(8): 958.     CrossRef
  • Conjugative Transfer of Acute Hepatopancreatic Necrosis Disease-Causing pVA1-Type Plasmid Is Mediated by a Novel Self-Encoded Type IV Secretion System
    Dehao Wang, Liying Wang, Dexi Bi, Jipeng Song, Guohao Wang, Ye Gao, Kathy F. J. Tang, Fanzeng Meng, Jingmei Xie, Fan Zhang, Jie Huang, Jianliang Li, Xuan Dong, Jennifer M. Auchtung, Songzhe Fu
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Culturomics of Bacteria from Radon-Saturated Water of the World’s Oldest Radium Mine
    Gabriela Kapinusova, Kunal Jani, Tereza Smrhova, Petr Pajer, Irena Jarosova, Jachym Suman, Michal Strejcek, Ondrej Uhlik, Jing Han
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Diluted Luria-Bertani medium vs. sewage sludge as growth media: comparison of community structure and diversity in the culturable bacteria
    Kazuo Yamamoto, Shotaro Toya, Sarah Sabidi, Yuki Hoshiko, Toshinari Maeda
    Applied Microbiology and Biotechnology.2021; 105(9): 3787.     CrossRef
  • Plant Broth- (Not Bovine-) Based Culture Media Provide the Most Compatible Vegan Nutrition for In Vitro Culturing and In Situ Probing of Plant Microbiota
    Hend Elsawey, Sascha Patz, Rahma A. Nemr, Mohamed S. Sarhan, Mervat A. Hamza, Hanan H. Youssef, Mohamed R. Abdelfadeel, Hassan-Sibroe A. Daanaa, Mahmoud El-Tahan, Mohamed Abbas, Mohamed Fayez, Katja Witzel, Silke Ruppel, Nabil A. Hegazi
    Diversity.2020; 12(11): 418.     CrossRef
Temporal and spatial impact of Spartina alterniflora invasion on methanogens community in Chongming Island, China
Xue Ping Chen , Jing Sun , Yi Wang , Heng Yang Zhang , Chi Quan He , Xiao Yan Liu , Nai Shun Bu , Xi-En Long
J. Microbiol. 2018;56(7):507-515.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-8062-y
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  • 12 Crossref
AbstractAbstract PDF
Methane production by methanogens in wetland is recognized as a significant contributor to global warming. Spartina alterniflora (S. alterniflora), which is an invasion plant in China’s wetland, was reported to have enormous effects on methane production. But studies on shifts in the methanogen community in response to S. alterniflora invasion at temporal and spatial scales in the initial invasion years are rare. Sediments derived from the invasive species S. alterniflora and the native species Phragmites australis (P. australis) in pairwise sites and an invasion chronosequence patch (4 years) were analyzed to investigate the abundance and community structure of methanogens using quantitative real-time PCR (qPCR) and Denaturing gradient gel electrophoresis (DGGE) cloning of the methyl-coenzyme M reductase A (mcrA) gene. For the pairwise sites, the abundance of methanogens in S. alterniflora soils was lower than that of P. australis soils. For the chronosequence patch, the abundance and diversity of methanogens was highest in the soil subjected to two years invasion, in which we detected some rare groups including Methanocellales and Methanococcales. These results indicated a priming effect at the initial invasion stages of S. alterniflora for microorganisms in the soil, which was also supported by the diverse root exudates. The shifts of methanogen communities after S. alterniflora invasion were due to changes in pH, salinity and sulfate. The results indicate that root exudates from S. alterniflora have a priming effect on methanogens in the initial years after invasion, and the predominate methylotrophic groups (Methanosarcinales) may adapt to the availability of diverse substrates and reflects the potential for high methane production after invasion by S. alterniflora.

Citations

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  • Stronger increase of methane emissions from coastal wetlands by non‐native Spartina alterniflora than non‐native Phragmites australis
    Andrea Fuchs, Ian C. Davidson, J. Patrick Megonigal, John L. Devaney, Christina Simkanin, Genevieve L. Noyce, Meng Lu, Grace M. Cott
    PLANTS, PEOPLE, PLANET.2025; 7(1): 62.     CrossRef
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    Yin Zuo, Leihua Zhao, Xinchen Wang, Pei Xin
    Earth Surface Processes and Landforms.2025;[Epub]     CrossRef
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    Ruilin Wang, Yanan Su, Xiaofang Sun, Meng Wang, Min Feng
    Environmental Monitoring and Assessment.2025;[Epub]     CrossRef
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    Wei Li, Xueyan Zuo, Zhijun Liu, Leichao Nie, Huazhe Li, Junjie Wang, Zhiguo Dou, Yang Cai, Xiajie Zhai, Lijuan Cui
    European Journal of Remote Sensing.2024;[Epub]     CrossRef
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    Hailey Erb, Ashley Keiser, Kristen M DeAngelis
    Sustainable Microbiology.2024;[Epub]     CrossRef
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    Yanzhong Yao, Youtao Song, Pinjie Su, Jing Wang, Congke Miao, Yifu Luo, Qiqi Sun, Jiale Wang, Guohui Zhang, Naishun Bu, Zhaolei Li
    Soil Biology and Biochemistry.2023; 178: 108931.     CrossRef
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    Jian Li, Zhanrui Leng, Taitiya Kenneth Yuguda, Lili Wei, Jiaojiao Xia, Chongyu Zhuo, Ziying Nie, Daolin Du
    Frontiers in Marine Science.2023;[Epub]     CrossRef
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    Zhenzhen Zhao, Liyu Cheng, Chiquan He, Feifei Wang, Jialin Liu, Yuanhang Li, Xueping Chen, Xiaoyan Liu, Gaoming Lv, Daoyuan Wang
    Water.2022; 14(10): 1633.     CrossRef
  • Exogenous nitrogen from riverine exports promotes soil methane production in saltmarshes in China
    Chenhao Zhou, Yan Zhang, Songshuo Li, Qiuyue Jiang, Hongyang Chen, Ting Zhu, Xiao Xu, Hao Liu, Shiyun Qiu, Jihua Wu, Ming Nie, Bo Li
    Science of The Total Environment.2022; 838: 156203.     CrossRef
  • Exogenous Nitrogen from Riverine Exports Promotes Soil Methane Production in Saltmarshes in China
    Chenhao Zhou, Yan Zhang, Songshuo Li, Qiuyue Jiang, Hongyang Chen, Ting Zhu, Xiao Xu, Hao Liu, Shi-Yun Qiu, Jihua Wu, Ming Nie, Bo Li
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    Chiquan He, Liyu Cheng, Daoyuan Wang, Zhenzhen Zhao, Zhengyu Wang, Feifei Wang, Xiaoxi Wang, Pu Zhang, Xueping Chen, Xiaoyan Liu
    Plant and Soil.2021; 469(1-2): 107.     CrossRef
  • The linkage between methane production activity and prokaryotic community structure in the soil within a shale gas field in China
    Yan-Qin Wang, Guang-Quan Xiao, Yong-Yi Cheng, Ming-Xia Wang, Bo-Ya Sun, Zhi-Feng Zhou
    Environmental Science and Pollution Research.2020; 27(7): 7453.     CrossRef
Lactobacillus paracasei subsp. paracasei LC01 Positively Modulates Intestinal Microflora in Healthy Young Adults
Hao Zhang , Jing Sun , Xianting Liu , Chuan Hong , Yuanbo Zhu , Aiping Liu , Siqi Li , Huiyuan Guo , Fazheng Ren
J. Microbiol. 2013;51(6):777-782.   Published online December 19, 2013
DOI: https://doi.org/10.1007/s12275-013-3279-2
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  • 23 Crossref
AbstractAbstract PDF
Lactobacillus paracasei subsp. paracasei LC01 (LC01) can tolerate intestinal stresses and has antioxidant activity. To evaluate the effect of the bacterium on human intestinal microflora, a randomized, double-blind, placebo-controlled human trial was carried out. Fifty-two healthy adult volunteers were randomized equally to two groups. One group consumed 12% (wt/vol) skimmed milk supplemented with 1010 CFU of LC01 each day for the 4-week treatment period, and then consumed placebo in the next treatment period, separated by a 2-week washout. The other group followed the reverse order. Group-specific real-time PCR and biochemical analyses was used to determine the intestinal bacterial composition of fecal samples collected at the end of every period, and the concentration of short-chain fatty acids and ammonia. A significant inhibition in fecal Escherichia coli and increase in Lactobacillus, Bifidobacterium, and Roseburia intestinalis were observed after consumption of LC01. Acetic acid and butyric acid were significantly higher in the probiotic stage and fecal ammonia was significantly lower. The results indicated a modulation effect of LC01 on the intestinal microflora of young adults, suggesting a beneficial effect on bowel health. LC01 may have potential value as a probiotic.

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Safety Evaluation of Lactobacillus paracasei subsp. paracasei LC-01, Probiotic Bacterium
Hao Zhang , Yu Wang , Jing Sun , Zirui Guo , Huiyuan Guo , Fazheng Ren
J. Microbiol. 2013;51(5):633-638.   Published online October 31, 2013
DOI: https://doi.org/10.1007/s12275-013-3336-x
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AbstractAbstract PDF
The safety of Lactobacillus paracasei subsp. paracasei LC-01 was evaluated for its use as a potential probiotic. In our in vitro study, the antibiotic resistance and the ability to produce biogenic amine were determined. The results showed that the strain was sensitive to all tested antibiotics and did not produce biogenic amine except for tyramine. The oral toxicity of this strain was evaluated in Balb/C mice. One hundred mice were divided into 10 groups. Four groups were administered 0, 108, 109, or 1010 CFU/mouse per day dissolved in saline solution respectively, for 28 days. Three groups were injected intraperitoneally with 109 CFU/mouse dissolved in saline solution, and were killed 2, 5, and 10 days after injection. The last 3 groups were injected with the vehicle as controls respectively. The results showed that oral administration of the strain had no adverse effects on mouse body weight and that there was no treatment-associated bacterial translocation. Intraperitoneal administration caused a significant translocation to liver, spleen and kidney. However, this translocation did not cause illness or death throughout the experiment. The results suggest that L. paracasei subsp. paracasei LC-01 is likely to be safe for human consumption.

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