- Diluted conventional media improve the microbial cultivability from aquarium seawater
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Jing Sun , Jiazhen Guo , Qian Yang , Jie Huang
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J. Microbiol. 2019;57(9):759-768. Published online August 3, 2019
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DOI: https://doi.org/10.1007/s12275-019-9175-7
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1,066
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Abstract
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The cultivation of microbial species remains a primary challenge
in microbiology and obtaining pure cultures is essential
for the study of microbial physiology and function. When
isolating microorganisms from aquaculture environments,
Vibrio are the most dominate isolates on the media that are
commonly used. In order to expand our ability to study microbial
species, an easy-operation and low-cost medium that
can reduce the interference of Vibrio strains and increase the
cultivability of other bacteria is urgently needed. We compared
viable cell counts on conventional media (CM; including
Marine Agar 2216 and LB media) and diluted media (DM;
including 1/10-Marine Agar 2216, 1/10-LB). We also assessed
the diversity of cultivable microorganisms under high and
low nutrient conditions by a plate-wash strategy coupled with
high-throughput sequencing of the V4 hypervariable region
of the 16S rRNA gene. The results show that microbial communities
from DM, especially 1/10-Marine Agar 2216, are
more diverse than those obtained from CM. Vibrio isolates
were reduced on DM. PICRUSt analysis revealed that nutrient
composition is a significant contributor to the diversity
and function of the cultivable microbial communities. Bacteria
grown on CM possess more pathogenic characteristics,
whereas DM favors the growth of bacteria that have multiple
metabolic functions. Collectively, our data provide strong evidence
that dilution of CM influences the cultivability of bacteria
from aquaculture seawater. It also supports that DM can
expand the range of microbial species that can be cultivated.
This study also provides insights for media design in microbial
cultivation from aquaculture systems.
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Seokwoo Jo, Hyun-Gwan Lee, Dong-Ha Nam, Chungoo Park Letters in Applied Microbiology.2026;[Epub] CrossRef - Comparison of methods for the enumeration of heterotrophic bacteria in seawater from the Adriatic Sea: Implications for aquaculture
Damir Kapetanović, Arijana Cenov, Dražen Lušić, Brigita Novosel, Darija Vukić Lušić Estuarine, Coastal and Shelf Science.2026; 336: 109825. CrossRef - Isolation and Identification of PHA-Producing Haloalkaliphilic Bacteria from Bledug Kesongo Mud Volcano
Anto Budiharjo, Isnanda Danur Nugroho, Wijanarka Wijanarka, Dyah Wulandari, Mukhammad Asy'ari Biointerface Research in Applied Chemistry.2026;[Epub] CrossRef - Heterologous Expression and Functional Analysis of Exiguobacterium Algin Lyase Gene by Pichia pastoris
Hanwen Wu, Kai Hou, Yutong Jiang, Mingjian Luan, Yuxia Sun, Xi He, Xiangzhong Zhao Fermentation.2025; 11(1): 34. CrossRef - Microbial diversity and ecological roles of halophilic microorganisms in Dingbian (Shaanxi, China) saline-alkali soils and salt lakes
Yue Ding, Juntao Ke, Tao Hong, Aodi Zhang, Xue Wu, Xinran Jiang, Shilong Shao, Ming Gong, Shengda Zhao, Liang Shen, Shaoxing Chen BMC Microbiology.2025;[Epub] CrossRef - Unexpected methane oxidation acceleration by two species of bacteria from the rainwater promoting Methylomonas sp. in the soil
Yuxuan Sang, Jia Tang, Oumei Wang, Qinqin Hao, Shiling Zheng, Fanghua Liu Journal of Environmental Chemical Engineering.2024; 12(5): 113895. CrossRef - Glucose addition improves the culture performance of Pacific white shrimp by regulating the assembly of Rhodobacteraceae taxa in gut bacterial community
Pengsheng Dong, Haipeng Guo, Lei Huang, Demin Zhang, Kai Wang Aquaculture.2023; 567: 739254. CrossRef - Reaching unreachables: Obstacles and successes of microbial cultivation and their reasons
Gabriela Kapinusova, Marco A. Lopez Marin, Ondrej Uhlik Frontiers in Microbiology.2023;[Epub] CrossRef - The Metabolomics Changes in Luria–Bertani Broth Medium under Different Sterilization Methods and Their Effects on Bacillus Growth
Haifeng Wang, Juan Guo, Xing Chen, Hongxuan He Metabolites.2023; 13(8): 958. CrossRef - Conjugative Transfer of Acute Hepatopancreatic Necrosis Disease-Causing pVA1-Type Plasmid Is Mediated by a Novel Self-Encoded Type IV Secretion System
Dehao Wang, Liying Wang, Dexi Bi, Jipeng Song, Guohao Wang, Ye Gao, Kathy F. J. Tang, Fanzeng Meng, Jingmei Xie, Fan Zhang, Jie Huang, Jianliang Li, Xuan Dong, Jennifer M. Auchtung, Songzhe Fu Microbiology Spectrum.2022;[Epub] CrossRef - Culturomics of Bacteria from Radon-Saturated Water of the World’s Oldest Radium Mine
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Kazuo Yamamoto, Shotaro Toya, Sarah Sabidi, Yuki Hoshiko, Toshinari Maeda Applied Microbiology and Biotechnology.2021; 105(9): 3787. CrossRef - Plant Broth- (Not Bovine-) Based Culture Media Provide the Most Compatible Vegan Nutrition for In Vitro Culturing and In Situ Probing of Plant Microbiota
Hend Elsawey, Sascha Patz, Rahma A. Nemr, Mohamed S. Sarhan, Mervat A. Hamza, Hanan H. Youssef, Mohamed R. Abdelfadeel, Hassan-Sibroe A. Daanaa, Mahmoud El-Tahan, Mohamed Abbas, Mohamed Fayez, Katja Witzel, Silke Ruppel, Nabil A. Hegazi Diversity.2020; 12(11): 418. CrossRef
- Temporal and spatial impact of Spartina alterniflora invasion on methanogens community in Chongming Island, China
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Xue Ping Chen , Jing Sun , Yi Wang , Heng Yang Zhang , Chi Quan He , Xiao Yan Liu , Nai Shun Bu , Xi-En Long
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J. Microbiol. 2018;56(7):507-515. Published online June 14, 2018
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DOI: https://doi.org/10.1007/s12275-018-8062-y
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1,013
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Abstract
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Methane production by methanogens in wetland is recognized
as a significant contributor to global warming. Spartina alterniflora
(S. alterniflora), which is an invasion plant in China’s
wetland, was reported to have enormous effects on methane
production. But studies on shifts in the methanogen community
in response to S. alterniflora invasion at temporal and
spatial scales in the initial invasion years are rare. Sediments
derived from the invasive species S. alterniflora and the native
species Phragmites australis (P. australis) in pairwise sites
and an invasion chronosequence patch (4 years) were analyzed
to investigate the abundance and community structure
of methanogens using quantitative real-time PCR (qPCR)
and Denaturing gradient gel electrophoresis (DGGE) cloning
of the methyl-coenzyme M reductase A (mcrA) gene. For the
pairwise sites, the abundance of methanogens in S. alterniflora
soils was lower than that of P. australis soils. For the
chronosequence patch, the abundance and diversity of methanogens
was highest in the soil subjected to two years invasion,
in which we detected some rare groups including Methanocellales
and Methanococcales. These results indicated a priming
effect at the initial invasion stages of S. alterniflora for
microorganisms in the soil, which was also supported by the
diverse root exudates. The shifts of methanogen communities
after S. alterniflora invasion were due to changes in pH, salinity
and sulfate. The results indicate that root exudates from
S. alterniflora have a priming effect on methanogens in the
initial years after invasion, and the predominate methylotrophic
groups (Methanosarcinales) may adapt to the availability
of diverse substrates and reflects the potential for high
methane production after invasion by S. alterniflora.
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- Stronger increase of methane emissions from coastal wetlands by non‐native Spartina alterniflora than non‐native Phragmites australis
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Yin Zuo, Leihua Zhao, Xinchen Wang, Pei Xin Earth Surface Processes and Landforms.2025;[Epub] CrossRef - Rapid and automated mapping method of Spartina alterniflora combines tidal imagery and phenological characteristics
Ruilin Wang, Yanan Su, Xiaofang Sun, Meng Wang, Min Feng Environmental Monitoring and Assessment.2025;[Epub] CrossRef -
Predictions of
Spartina alterniflora
leaf functional traits based on hyperspectral data and machine learning models
Wei Li, Xueyan Zuo, Zhijun Liu, Leichao Nie, Huazhe Li, Junjie Wang, Zhiguo Dou, Yang Cai, Xiajie Zhai, Lijuan Cui European Journal of Remote Sensing.2024;[Epub] CrossRef - Salt marsh soil organic carbon is regulated by drivers of microbial activity
Hailey Erb, Ashley Keiser, Kristen M DeAngelis Sustainable Microbiology.2024;[Epub] CrossRef - Asymmetric responses of functional microbes in methane and nitrous oxide emissions to plant invasion: A meta-analysis
Yanzhong Yao, Youtao Song, Pinjie Su, Jing Wang, Congke Miao, Yifu Luo, Qiqi Sun, Jiale Wang, Guohui Zhang, Naishun Bu, Zhaolei Li Soil Biology and Biochemistry.2023; 178: 108931. CrossRef - Increasing coastal reclamation by Invasive alien plants and coastal armoring threatens the ecological sustainability of coastal wetlands
Jian Li, Zhanrui Leng, Taitiya Kenneth Yuguda, Lili Wei, Jiaojiao Xia, Chongyu Zhuo, Ziying Nie, Daolin Du Frontiers in Marine Science.2023;[Epub] CrossRef - Spartina alterniflora Invaded Coastal Wetlands by Raising Soil Sulfur Contents: A Meta-Analysis
Zhenzhen Zhao, Liyu Cheng, Chiquan He, Feifei Wang, Jialin Liu, Yuanhang Li, Xueping Chen, Xiaoyan Liu, Gaoming Lv, Daoyuan Wang Water.2022; 14(10): 1633. CrossRef - Exogenous nitrogen from riverine exports promotes soil methane production in saltmarshes in China
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Chenhao Zhou, Yan Zhang, Songshuo Li, Qiuyue Jiang, Hongyang Chen, Ting Zhu, Xiao Xu, Hao Liu, Shi-Yun Qiu, Jihua Wu, Ming Nie, Bo Li SSRN Electronic Journal .2021;[Epub] CrossRef - Spartina alterniflora raised soil sulfide content by regulating sulfur cycle-associated bacteria in the Jiuduansha Wetland of China
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- Lactobacillus paracasei subsp. paracasei LC01 Positively Modulates Intestinal Microflora in Healthy Young Adults
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Hao Zhang , Jing Sun , Xianting Liu , Chuan Hong , Yuanbo Zhu , Aiping Liu , Siqi Li , Huiyuan Guo , Fazheng Ren
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J. Microbiol. 2013;51(6):777-782. Published online December 19, 2013
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DOI: https://doi.org/10.1007/s12275-013-3279-2
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951
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Abstract
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Lactobacillus paracasei subsp. paracasei LC01 (LC01) can
tolerate intestinal stresses and has antioxidant activity. To
evaluate the effect of the bacterium on human intestinal microflora,
a randomized, double-blind, placebo-controlled
human trial was carried out. Fifty-two healthy adult volunteers
were randomized equally to two groups. One group
consumed 12% (wt/vol) skimmed milk supplemented with
1010 CFU of LC01 each day for the 4-week treatment period,
and then consumed placebo in the next treatment period,
separated by a 2-week washout. The other group followed
the reverse order. Group-specific real-time PCR and biochemical
analyses was used to determine the intestinal bacterial
composition of fecal samples collected at the end of
every period, and the concentration of short-chain fatty acids
and ammonia. A significant inhibition in fecal Escherichia
coli and increase in Lactobacillus, Bifidobacterium, and Roseburia
intestinalis were observed after consumption of LC01.
Acetic acid and butyric acid were significantly higher in the
probiotic stage and fecal ammonia was significantly lower.
The results indicated a modulation effect of LC01 on the
intestinal microflora of young adults, suggesting a beneficial
effect on bowel health. LC01 may have potential value as a
probiotic.
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- Safety Evaluation of Lactobacillus paracasei subsp. paracasei LC-01, Probiotic Bacterium
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Hao Zhang , Yu Wang , Jing Sun , Zirui Guo , Huiyuan Guo , Fazheng Ren
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J. Microbiol. 2013;51(5):633-638. Published online October 31, 2013
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DOI: https://doi.org/10.1007/s12275-013-3336-x
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1,211
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The safety of Lactobacillus paracasei subsp. paracasei LC-01 was evaluated for its use as a potential probiotic. In our in vitro study, the antibiotic resistance and the ability to produce biogenic amine were determined. The results showed that the strain was sensitive to all tested antibiotics and did not produce biogenic amine except for tyramine. The oral toxicity of this strain was evaluated in Balb/C mice. One hundred mice were divided into 10 groups. Four groups were administered 0, 108, 109, or 1010 CFU/mouse per day dissolved in saline solution respectively, for 28 days. Three groups were injected intraperitoneally with 109 CFU/mouse dissolved in saline solution, and were killed 2, 5, and 10 days after injection. The last 3 groups were injected with the vehicle as controls respectively. The results showed that oral administration of the strain had no adverse effects on mouse body weight and that there was no treatment-associated bacterial translocation. Intraperitoneal administration caused a significant translocation to liver, spleen and kidney. However, this translocation did not cause illness or death throughout the experiment. The results suggest that L. paracasei subsp. paracasei LC-01 is likely to be safe for human consumption.
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