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Jin-Sik Kim 2 Articles
Recent paradigm shift in the assembly of bacterial tripartite efflux pumps and the type I secretion system
Inseong Jo , Jin-Sik Kim , Yongbin Xu , Jaekyung Hyun , Kangseok Lee , Nam-Chul Ha
J. Microbiol. 2019;57(3):185-194.   Published online February 26, 2019
DOI: https://doi.org/10.1007/s12275-019-8520-1
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  • 10 Web of Science
  • 8 Crossref
AbstractAbstract PDF
Tripartite efflux pumps and the type I secretion system of Gram-negative bacteria are large protein complexes that span the entire cell envelope. These complexes expel antibiotics and other toxic substances or transport protein toxins from bacterial cells. Elucidating the binary and ternary complex structures at an atomic resolution are crucial to understanding the assembly and working mechanism. Recent advances in cryoelectron microscopy along with the construction of chimeric proteins drastically shifted the assembly models. In this review, we describe the current assembly models from a historical perspective and emphasize the common assembly mechanism for the assembly of diverse tripartite pumps and type I secretion systems.

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  • Molecular Insights into CLD Domain Dynamics and Toxin Recruitment of the HlyA E. coli T1SS
    Rocco Gentile, Stephan Schott-Verdugo, Sakshi Khosa, Cigdem Günes, Michele Bonus, Jens Reiners, Sander H.J. Smits, Lutz Schmitt, Holger Gohlke
    Journal of Molecular Biology.2025; 437(24): 169485.     CrossRef
  • Molecular mechanisms of antibiotic resistance revisited
    Elizabeth M. Darby, Eleftheria Trampari, Pauline Siasat, Maria Solsona Gaya, Ilyas Alav, Mark A. Webber, Jessica M. A. Blair
    Nature Reviews Microbiology.2023; 21(5): 280.     CrossRef
  • Permeation of Fosfomycin through the Phosphate-Specific Channels OprP and OprO of Pseudomonas aeruginosa
    Vinaya Kumar Golla, Claudio Piselli, Ulrich Kleinekathöfer, Roland Benz
    The Journal of Physical Chemistry B.2022; 126(7): 1388.     CrossRef
  • Adaptation of the periplasm to maintain spatial constraints essential for cell envelope processes and cell viability
    Eric Mandela, Christopher J Stubenrauch, David Ryoo, Hyea Hwang, Eli J Cohen, Von L Torres, Pankaj Deo, Chaille T Webb, Cheng Huang, Ralf B Schittenhelm, Morgan Beeby, JC Gumbart, Trevor Lithgow, Iain D Hay
    eLife.2022;[Epub]     CrossRef
  • Structure, Assembly, and Function of Tripartite Efflux and Type 1 Secretion Systems in Gram-Negative Bacteria
    Ilyas Alav, Jessica Kobylka, Miriam S. Kuth, Klaas M. Pos, Martin Picard, Jessica M. A. Blair, Vassiliy N. Bavro
    Chemical Reviews.2021; 121(9): 5479.     CrossRef
  • Biotechnological applications of type 1 secretion systems
    Zohreh Pourhassan N., Sander H.J. Smits, Jung Hoon Ahn, Lutz Schmitt
    Biotechnology Advances.2021; 53: 107864.     CrossRef
  • Protein-Protein Interactions in the Cytoplasmic Membrane of Escherichia coli: Influence of the Overexpression of Diverse Transporter-Encoding Genes on the Activities of PTS Sugar Uptake Systems
    Mohammad Aboulwafa, Zhongge Zhang, Milton H. Saier Jr.
    Microbial Physiology.2020; 30(1-6): 36.     CrossRef
  • Perspectives towards antibiotic resistance: from molecules to population
    Joon-Hee Lee
    Journal of Microbiology.2019; 57(3): 181.     CrossRef
Molecular architecture of the bacterial tripartite multidrug efflux pump focusing on the adaptor bridging model
Saemee Song , Jin-Sik Kim , Kangseok Lee , Nam-Chul Ha
J. Microbiol. 2015;53(6):355-364.   Published online May 30, 2015
DOI: https://doi.org/10.1007/s12275-015-5248-4
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  • 9 Crossref
AbstractAbstract PDF
Gram-negative bacteria expel a wide range of toxic substances through tripartite drug efflux pumps consisting of an inner membrane transporter, an outer membrane channel protein, and a periplasmic adaptor protein. These pumps form tripartite assemblies which can span the entire cell envelope, including the inner and outer membranes. There have been controversial findings regarding the assembly of the individual components in tripartite drug efflux pumps. Recent structural and functional studies have advanced our understanding of the assembly and working mechanisms of the pumps. Here, we re-evaluate the assembly models based on recent structural and functional studies. In particular, this study focuses on the ‘adaptor bridging model’, highlighting the intermeshing cogwheel-like interactions between the tip regions of the outer membrane channel protein and the periplasmic adaptor protein in the hexameric assembly.

Citations

Citations to this article as recorded by  
  • Structural Features and Energetics of the Periplasmic Entrance Opening of the Outer Membrane Channel TolC Revealed by Molecular Dynamics Simulation and Markov State Model Analysis
    Jingwei Weng, Wenning Wang
    Journal of Chemical Information and Modeling.2019; 59(5): 2359.     CrossRef
  • Recent paradigm shift in the assembly of bacterial tripartite efflux pumps and the type I secretion system
    Inseong Jo, Jin-Sik Kim, Yongbin Xu, Jaekyung Hyun, Kangseok Lee, Nam-Chul Ha
    Journal of Microbiology.2019; 57(3): 185.     CrossRef
  • Antibiotic Hybrids: the Next Generation of Agents and Adjuvants against Gram-Negative Pathogens?
    Ronald Domalaon, Temilolu Idowu, George G. Zhanel, Frank Schweizer
    Clinical Microbiology Reviews.2018;[Epub]     CrossRef
  • Genetic identification of factors for extracellular cellulose accumulation in the thermophilic cyanobacterium Thermosynechococcus vulcanus: proposal of a novel tripartite secretion system
    Kaisei Maeda, Jyunya Tamura, Yukiko Okuda, Rei Narikawa, Takafumi Midorikawa, Masahiko Ikeuchi
    Molecular Microbiology.2018; 109(1): 121.     CrossRef
  • Switch Loop Flexibility Affects Substrate Transport of the AcrB Efflux Pump
    Reinke T. Müller, Timothy Travers, Hi-jea Cha, Joshua L. Phillips, S. Gnanakaran, Klaas M. Pos
    Journal of Molecular Biology.2017; 429(24): 3863.     CrossRef
  • Molecular Rationale behind the Differential Substrate Specificity of Bacterial RND Multi-Drug Transporters
    Venkata Krishnan Ramaswamy, Attilio V. Vargiu, Giuliano Malloci, Jürg Dreier, Paolo Ruggerone
    Scientific Reports.2017;[Epub]     CrossRef
  • Structure of the MacAB–TolC ABC-type tripartite multidrug efflux pump
    Anthony W. P. Fitzpatrick, Salomé Llabrés, Arthur Neuberger, James N. Blaza, Xiao-Chen Bai, Ui Okada, Satoshi Murakami, Hendrik W. van Veen, Ulrich Zachariae, Sjors H. W. Scheres, Ben F. Luisi, Dijun Du
    Nature Microbiology.2017;[Epub]     CrossRef
  • Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain
    Daichi Murata, Hiroyuki Okano, Clement Angkawidjaja, Masato Akutsu, Shun-ichi Tanaka, Kenyu Kitahara, Takuya Yoshizawa, Hiroyoshi Matsumura, Yuji Kado, Eiichi Mizohata, Tsuyoshi Inoue, Satoshi Sano, Yuichi Koga, Shigenori Kanaya, Kazufumi Takano
    Biochemistry.2017; 56(47): 6281.     CrossRef
  • The Crystal Structure of the YknZ Extracellular Domain of ABC Transporter YknWXYZ from Bacillus amyloliquefaciens
    Yongbin Xu, Jianyun Guo, Lulu Wang, Rui Jiang, Xiaoling Jin, Jing Liu, Shengdi Fan, Chun-Shan Quan, Nam-Chul Ha, Bostjan Kobe
    PLOS ONE.2016; 11(5): e0155846.     CrossRef

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