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Jin Hwan Park 2 Articles
Low Cell Density Regulator AphA Upregulates the Expression of Vibrio vulnificus iscR Gene Encoding the Fe-S Cluster Regulator IscR
Jong Gyu Lim , Jin Hwan Park , Sang Ho Choi
J. Microbiol. 2014;52(5):413-421.   Published online February 17, 2014
DOI: https://doi.org/10.1007/s12275-014-3592-4
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AbstractAbstract PDF
IscR is a global transcriptional regulator that contributes to the pathogenesis of Vibrio vulnificus, a food-borne pathogen. In the present study, the regulatory mechanism for the iscR expression of V. vulnificus was evaluated. The expression of iscR was found to be upregulated by a transcriptional regu-lator AphA, a homologue of the low cell density regulator AphA of the Vibrio species, in the exponential phase of growth. The promoter activity of iscR appeared to be acti-vated and repressed by AphA and IscR, respectively. EMSA and DNase I protection assay showed that both AphA and IscR bind to the iscR regulatory region and the binding site for AphA overlapped with part of the binding site for IscR. Further mutational analysis suggested that AphA upregu-lates the iscR expression only in the presence of functional IscR. An examination of the roles of AphA and the binding sites revealed that the binding of AphA would hinder the IscR-mediated repression of the iscR transcription. The com-bined results show that V. vulnificus AphA upregulates iscR expression by antagonizing its negative autoregulation.

Citations

Citations to this article as recorded by  
  • Environmental magnesium ion affects global gene expression, motility, biofilm formation and virulence of Vibrio parahaemolyticus
    Xue Li, Xiaobai Zhang, Miaomiao Zhang, Xi Luo, Tingting Zhang, Xianjin Liu, Renfei Lu, Yiquan Zhang
    Biofilm.2024; 7: 100194.     CrossRef
  • Fe-S cluster homeostasis and beyond: The multifaceted roles of IscR
    Erin L. Mettert, Patricia J. Kiley
    Biochimica et Biophysica Acta (BBA) - Molecular Cell Research.2024; 1871(6): 119749.     CrossRef
  • Complex regulatory networks of virulence factors in Vibrio vulnificus
    Garam Choi, Sang Ho Choi
    Trends in Microbiology.2022; 30(12): 1205.     CrossRef
  • A Nitric Oxide-Responsive Transcriptional Regulator NsrR Cooperates With Lrp and CRP to Tightly Control the hmpA Gene in Vibrio vulnificus
    Garam Choi, Dukyun Kim, Hanhyeok Im, Sang Ho Choi
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • A MARTX Toxin rtxA Gene Is Controlled by Host Environmental Signals through a CRP-Coordinated Regulatory Network in Vibrio vulnificus
    Zee-Won Lee, Seung-Ho Hwang, Garam Choi, Kyung Ku Jang, Tae Hee Lee, Kyung Min Chung, Byoung Sik Kim, Sang Ho Choi, Caroline S. Harwood
    mBio.2020;[Epub]     CrossRef
  • The transcriptional regulator IscR integrates host-derived nitrosative stress and iron starvation in activation of the vvhBA operon in Vibrio vulnificus
    Garam Choi, Kyung Ku Jang, Jong Gyu Lim, Zee-Won Lee, Hanhyeok Im, Sang Ho Choi
    Journal of Biological Chemistry.2020; 295(16): 5350.     CrossRef
  • Role and Regulation of the Orphan Apha Protein of Quorum Sensing in Pathogenic Vibrios
    Renfei Lu, George Osei-Adjei, Xinxiang Huang, Yiquan Zhang
    Future Microbiology.2018; 13(3): 383.     CrossRef
  • Crystal Structure of the Regulatory Domain of AphB from Vibrio vulnificus, a Virulence Gene Regulator
    Nohra Park, Saemee Song, Garam Choi, Kyung Ku Jang, Inseong Jo, Sang Ho Choi, Nam-Chul Ha
    Molecules and Cells.2017; 40(4): 299.     CrossRef
  • Iron- and Quorum-sensing Signals Converge on Small Quorum-regulatory RNAs for Coordinated Regulation of Virulence Factors in Vibrio vulnificus
    Yancheng Wen, In Hwang Kim, Kun-Soo Kim
    Journal of Biological Chemistry.2016; 291(27): 14213.     CrossRef
  • What a difference a cluster makes: The multifaceted roles of IscR in gene regulation and DNA recognition
    Joana A. Santos, Pedro José Barbosa Pereira, Sandra Macedo-Ribeiro
    Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics.2015; 1854(9): 1101.     CrossRef
  • Characterization of the Vibrio vulnificus 1-Cys Peroxiredoxin Prx3 and Regulation of Its Expression by the Fe-S Cluster Regulator IscR in Response to Oxidative Stress and Iron Starvation
    Jong Gyu Lim, Ye-Ji Bang, Sang Ho Choi
    Journal of Biological Chemistry.2014; 289(52): 36263.     CrossRef
Effects of Nutritional Enrichment on the Production of Acetone-Butanol-Ethanol (ABE) by Clostridium acetobutylicum
Sung Jun Choi , Joungmin Lee , Yu-Sin Jang , Jin Hwan Park , Sang Yup Lee , In Ho Kim
J. Microbiol. 2012;50(6):1063-1066.   Published online December 30, 2012
DOI: https://doi.org/10.1007/s12275-012-2373-1
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  • 21 Crossref
AbstractAbstract PDF
Clostridium acetobutylicum is an industrially important organism that produces acetone-butanol-ethanol (ABE). The main objective of this study was to characterize the effects of increased cell density on the production of ABE during the phase transition from acidogenesis to solventogenesis in C. acetobutylicum. The increased ABE productivity of C. acetobutylicum was obtained by increasing the cell density using a newly designed medium (designated C. acetobutylicum medium 1; CAM1). The maximum OD600 value of C. acetobutylicum ATCC 824 strain obtained with CAM1 was 19.7, which is 1.8 times higher than that obtained with clostridial growth medium (CGM). The overall ABE productivity obtained in the CAM1-fermetation of the ATCC 824 strain was 0.83 g/L/h, which is 1.5 times higher than that (0.55 g/L/h) obtained with CGM. However, the increased productivity obtained with CAM1 did not result in an increase in the final ABE titer, because phase transition occurred at a high titer of acids.

Citations

Citations to this article as recorded by  
  • Transcriptomic analysis reveals adhE2-dominant expression in early-butanol-producing Clostridium acetobutylicum ATCC 824 (pCD07239)
    Haeng Lim Lee, Hyeon Jeong Seong, Oanh Thi Dao, Jin-Hyo Kim, Yu-Sin Jang
    Systems Microbiology and Biomanufacturing.2026;[Epub]     CrossRef
  • Characterization of acidogenic phase metabolism in Clostridium acetobutylicum ATCC 824 (pCD07239) under different culture conditions
    Haeng Lim Lee, Selim Ashoor, Zhuang Yao, Yu-Sin Jang
    Applied Biological Chemistry.2024;[Epub]     CrossRef
  • Enhanced biobutanol production with sustainable Co-substrates synergy from paper waste and garden waste with municipal biowaste
    Sara Farmanbordar, Armaghan Javid, Hamid Amiri, Joeri F.M. Denayer, Keikhosro Karimi
    Biomass and Bioenergy.2024; 186: 107262.     CrossRef
  • Effect of butyrate supplementation on butanol production and metabolic behavior in Clostridium acetobutylicum ATCC 824 (pCD07239)
    Sampathkumar Palaniswamy, Haeng Lim Lee, Selim Ashoor, Yu-Sin Jang
    Journal of Applied Biological Chemistry.2024;[Epub]     CrossRef
  • Acetone-butanol-ethanol fermentation products recovery: Challenges and opportunities
    Saeed Rafieyan, Mohammad Amin Boojari, Ali Setayeshnia, Mohammad Fakhroleslam, Eduardo Sánchez-Ramírez, Mohammad Saber Bay, Juan Gabriel Segovia-Hernández
    Chemical Engineering Research and Design.2024; 205: 640.     CrossRef
  • A comparative phenotypic and genomic analysis of Clostridium beijerinckii mutant with enhanced solvent production
    Seung-Oh Seo, Ting Lu, Yong-Su Jin, Hans P. Blaschek
    Journal of Biotechnology.2021; 329: 49.     CrossRef
  • Biobutanol production from lignocellulosic biomass using immobilized Clostridium acetobutylicum
    Tsung-Yu Tsai, Yung-Chung Lo, Cheng-Di Dong, Dillirani Nagarajan, Jo-Shu Chang, Duu-Jong Lee
    Applied Energy.2020; 277: 115531.     CrossRef
  • Pathway dissection, regulation, engineering and application: lessons learned from biobutanol production by solventogenic clostridia
    Shubo Li, Li Huang, Chengzhu Ke, Zongwen Pang, Liming Liu
    Biotechnology for Biofuels.2020;[Epub]     CrossRef
  • Combining chemical flocculation and bacterial co‐culture of Cupriavidus taiwanensis and Ureibacillus thermosphaericus to detoxify a hardwood hemicelluloses hydrolysate and enable acetone–butanol–ethanol fermentation leading to butanol
    Mariem Theiri, Hassan Chadjaa, Mariya Marinova, Mario Jolicoeur
    Biotechnology Progress.2019;[Epub]     CrossRef
  • Effects of nutritional enrichment on acid production from degenerated (non-solventogenic) Clostridium acetobutylicum strain M5
    Ji Eun Woo, Sang Yup Lee, Yu-Sin Jang
    Applied Biological Chemistry.2018; 61(4): 469.     CrossRef
  • Unique genetic cassettes in a Thermoanaerobacterium contribute to simultaneous conversion of cellulose and monosugars into butanol
    Tinggang Li, Chen Zhang, Kun-Lin Yang, Jianzhong He
    Science Advances.2018;[Epub]     CrossRef
  • Metabolic Engineering Strategies of Clostridia for Butyric Acid Production
    Hyeon Ji Noh, Yu-Sin Jang
    KSBB Journal.2017; 32(3): 169.     CrossRef
  • A dynamic metabolic flux analysis of ABE (acetone‐butanol‐ethanol) fermentation by Clostridium acetobutylicum ATCC 824, with riboflavin as a by‐product
    Xinhe Zhao, Mayssa Kasbi, Jingkui Chen, Sabine Peres, Mario Jolicoeur
    Biotechnology and Bioengineering.2017; 114(12): 2907.     CrossRef
  • Co-fermentation of alfalfa juice and hardwood hydrolysate for butanol production in combined biorefinery systems
    Fatma Mechmech, Mariya Marinova, Hassan Chadjaa, Mohamed Rahni, Najla Ben Akacha, Mohamed Gargouri
    Industrial Crops and Products.2016; 89: 29.     CrossRef
  • Simultaneous saccharification and fermentation of hemicellulose to butanol by a non-sporulating Clostridium species
    Tinggang Li, Jianzhong He
    Bioresource Technology.2016; 219: 430.     CrossRef
  • A quantitative metabolomics study of high sodium response in Clostridium acetobutylicum ATCC 824 acetone-butanol-ethanol (ABE) fermentation
    Xinhe Zhao, Stefan Condruz, Jingkui Chen, Mario Jolicoeur
    Scientific Reports.2016;[Epub]     CrossRef
  • Alfalfa juice as a nitrogen source or supplement for acetone–butanol–ethanol production by Clostridium acetobutylicum
    Fatma Mechmech, Mariya Marinova, Hassan Chadjaa, Mohamed Rahni, Najla Ben Akacha, Mohamed Gargouri
    Industrial Crops and Products.2015; 78: 73.     CrossRef
  • Improvement of butanol production from a hardwood hemicelluloses hydrolysate by combined sugar concentration and phenols removal
    Fatma Mechmech, Hassan Chadjaa, Mohamed Rahni, Mariya Marinova, Najla Ben Akacha, Mohamed Gargouri
    Bioresource Technology.2015; 192: 287.     CrossRef
  • Metabolic engineering of Clostridium acetobutylicum for butyric acid production with high butyric acid selectivity
    Yu-Sin Jang, Jung Ae Im, So Young Choi, Jung Im Lee, Sang Yup Lee
    Metabolic Engineering.2014; 23: 165.     CrossRef
  • Proteomic analyses of the phase transition from acidogenesis to solventogenesis using solventogenic and non-solventogenic Clostridium acetobutylicum strains
    Yu-Sin Jang, Mee-Jung Han, Joungmin Lee, Jung Ae Im, Yu Hyun Lee, Eleftherios Terry Papoutsakis, George Bennett, Sang Yup Lee
    Applied Microbiology and Biotechnology.2014; 98(11): 5105.     CrossRef
  • Molecular interactions of alcohols with zeolite BEA and MOR frameworks
    Kai Stückenschneider, Juliane Merz, Gerhard Schembecker
    Journal of Molecular Modeling.2013; 19(12): 5611.     CrossRef

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