- Sutterella faecalis sp. nov., isolated from human faeces
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Byeong Seob Oh , Ji-Sun Kim , Seung Yeob Yu , Seoung Woo Ryu , Seung-Hwan Park , Se Won Kang , Jam-Eon Park , Seung-Hyeon Choi , Kook-Il Han , Keun Chul Lee , Mi Kyung Eom , Min Kuk Suh , Han Sol Kim , Dong Ho Lee , Hyuk Yoon , Byung-Yong Kim , Je Hee Lee , Jung-Sook Lee , Ju Huck Lee
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J. Microbiol. 2020;58(2):99-104. Published online January 29, 2020
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DOI: https://doi.org/10.1007/s12275-020-9396-9
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1,127
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An obligately anaerobic, Gram-stain-negative, non-motile,
non-spore-forming, and coccobacilli-shaped bacterial strain,
designated KGMB03119T, was isolated from human faeces
from a Korean. Phylogenetic analysis based on the 16S rRNA
gene sequence revealed that the isolate was a member of the
genus Sutterella and most closely related to Sutterlla wadsworthensis
KCTC 15691T (96.8% 16S rRNA gene sequence
similarity). The DNA G + C content of strain KGMB03119T
was 58.3 mol% as determined from its whole genome sequence.
Strain KGMB03119T was asaccharolytic, catalase-positive,
oxidase- and urease-negative. Furthermore, the isolate
was positive for alkaline phosphatase, leucine arylamidase,
acid phosphatase, arginine arylamidase, alanine arylamidase,
and glycine arylamidase. The major cellular fatty acids (> 10%)
of the isolate were C18:1ω9c and C16:0. Methylmenaquinone-5
(MMK-5, 100%) was the predominant isoprenoid quinone
in the isolate. Based on the phylogenetic, physiological, and
chemotaxonomic characteristics, strain KGMB03119T represents
a novel species, for which the name Sutterella faecalis
sp. nov. is proposed. The type strain is KGMB03119T (= KCTC
15823T = NBRC 114254T).
-
Citations
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- Anaerotignum faecicola sp. nov., isolated from human faeces
-
Seung-Hyeon Choi , Ji-Sun Kim , Jam-Eon Park , Keun Chul Lee , Mi Kyung Eom , Byeong Seob Oh , Seung Yeob Yu , Se Won Kang , Kook-Il Han , Min Kuk Suh , Dong Ho Lee , Hyuk Yoon , Byung-Yong Kim , Je Hee Lee , Ju Huck Lee , Jung-Sook Lee , Seung-Hwan Park
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J. Microbiol. 2019;57(12):1073-1078. Published online November 4, 2019
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DOI: https://doi.org/10.1007/s12275-019-9268-3
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1,436
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Abstract
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A strictly anaerobic bacterium, designated as strain KGMB-
03357T, was isolated from the faeces of a healthy Korean selected
by Bundang Seoul National University based on health
status. Cells of strain KGMB03357T are Gram-stain-positive,
non-motile, non-spore-forming, and observed as straight or
curved rods. The isolate grew at 10–45°C (optimum temperature
of 40°C) and a pH range of 5.1–10.5 (optimum pH of
6.8). Analysis of phylogenetic trees based on the 16S rRNA
gene sequences revealed that strain KGMB03357T forms a
lineage within the genus Anaerotignum, and is most closely
related to Anaerotignum lactatifermentans G17T (= KCTC
15066T, 96.1%), Anaerotignum propionicum DSM 1682T (=
KCTC 5582T, 94.9%), Anaerotignum neopropionicum DSM
03847T (= KCTC 15564T, 94.9%), and Anaerotignum aminivorans
SH021T (= KCTC 15705T, 94.8%). The ANI values
between strain KGMB 03357T and members of the genus
Anaerotignum were 73.3–71.0%, which are below the ANI
criterion for interspecies identity. The DNA G + C content
based on the whole-genome sequence is 47.3 mol%. The major
cellular fatty acids of strain KGMB03357T are C16:0, C18:0,
C18:1 cis 9, and anteiso-C15:0. Strain KGMB03357T contains
meso-diaminopimelic acid as the diagnostic amino acid in
the cell wall peptidoglycan. Based on the phenotypic, phylogenetic,
and genomic properties, strain KGMB 03357T represents
a novel species of the genus Anaerotignum, for which
the name Anaerotignum faecicola sp. nov. is proposed. The
type strain is KGMB03357T (= KCTC 15736T = DSM 107953T).
-
Citations
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International Journal of Systematic and Evolutionary Microbiology
.2020; 70(3): 1443. CrossRef
- Intestinibaculum porci gen. nov., sp. nov., a new member of the family Erysipelotrichaceae isolated from the small intestine of a swine
-
Ji-Sun Kim , Hanna Choe , Yu-Ri Lee , Kyung Mo Kim , Doo-Sang Park
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J. Microbiol. 2019;57(5):381-387. Published online February 22, 2019
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DOI: https://doi.org/10.1007/s12275-019-8631-8
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1,186
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Abstract
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A strictly anaerobic, Gram-stain-positive, catalase-negative,
non-motile, rod-shaped bacterium, designated SG0102T, was
isolated from the small intestine of a swine. Optimal growth
occurred at 37°C and pH 7.0. Furthermore, growth was observed
in the presence of up to 3% (w/v) NaCl but not at
salinity levels higher than 4%. The comparative analysis of
16S rRNA gene sequences showed that strain SG0102T was
most closely related to Kandleria vitulina DSM 20405T (93.3%),
followed by Catenibacterium mitsuokai KCTC 5053T (91.1%),
Sharpea azabuensis KCTC 15217T (91.0%), and Eggerthia catenaformis
DSM 5348T (89.6%). The average nucleotide identity
values between strain SG0102T and related species, K. vitulina
DSM 20405T, C. mitsuokai KCTC 5053T, S. azabuensis
KCTC 15217T, and E. catenaformis DSM 5348T, were 71.0,
69.3, 70.0, and 69.2%, respectively. The phylogenetic analysis
based on 16S rRNA gene sequence revealed that strain
SG0102T belonged to the family Erysipelotrichaceae in the
class Erysipelotrichia. The DNA G+C content of the strain
SG0102T was 39.5 mol%. The major cellular fatty acids (> 10%)
of strain SG0102T were C16:0, C16:0 dimethyl acetal, and C18:2
ω9/12c. The cell wall peptidoglycan of strain SG0102T contained
the meso-diaminopimelic acid. The strain SG0102T
produced lactic acid as a major end product of fermentation.
These distinct phenotypic and phylogenetic properties suggest
that strain SG0102T represents a novel species in a novel
genus of the family Erysipelotrichaceae, for which the name
Intestinibaculum porci gen. nov. sp. nov. is proposed. The
type strain is SG0102T (= KCTC 15725T = NBRC 113396T).
-
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- Mediterraneibacter butyricigenes sp. nov., a butyrate-producing bacterium isolated from human faeces
-
Ji-Sun Kim , Keun Chul Lee , Min Kuk Suh , Kook-Il Han , Mi Kyung Eom , Ju Huck Lee , Seung-Hwan Park , Se Won Kang , Jam-Eon Park , Byeong Seob Oh , Seung Yeob Yu , Seung-Hyeon Choi , Dong Ho Lee , Hyuk Yoon , Byung-Yong Kim , Seung-Jo Yang , Jung-Sook Lee
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J. Microbiol. 2019;57(1):38-44. Published online December 29, 2018
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DOI: https://doi.org/10.1007/s12275-019-8550-8
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1,463
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31
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32
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Abstract
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A Gram-stain-positive, obligately anaerobic, non-motile, nonspore-
forming, and rod-shaped bacterial strain, designated
KGMB01110T, was isolated from a faecal sample of a healthy
male in South Korea. Phylogenetic analysis based on 16S rRNA
gene showed that strain KGMB01110T belonged to Clostridium
cluster XIVa and was most closely related to Mediterraneibacter
glycyrrhizinilyticus KCTC 5760T (95.9% 16S rRNA
gene sequence similarity). The DNA G + C content of strain
KGMB01110T based on its whole genome sequence was 44.1
mol%. The major cellular fatty acids (> 10%) of the isolate
were C14:0 and C16:0. The strain KGMB01110T was positive for
arginine dihydrolase, β-galactosidase-6-phosphatase, and
alkaline phosphatase. The strain KGMB01110T also produced
acid from D-glucose and D-rhamnose, and hydrolyzed gelatin
and aesculin. Furthermore, HPLC analysis and UV-tests
of culture supernatant revealed that the strain KGMB01110T
produced butyrate as the major end product of glucose fermentation.
Based on the phylogenetic and phenotypic characteristics,
strain KGMB01110T represent a novel species of
the genus Mediterraneibacter in the family Lachnospiraceae.
The type strain is KGMB01110T (= KCTC 15684T = CCUG
72830T).
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- Interaction between the α-Barrel Tip of Vibrio vulnificus TolC Homologs and AcrA Implies the Adapter Bridging Model
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Seunghwa Lee , Saemee Song , Minho Lee , Soonhye Hwang , Ji-Sun Kim , Nam-Chul Ha , Kangseok Lee
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J. Microbiol. 2014;52(2):148-153. Published online February 1, 2014
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DOI: https://doi.org/10.1007/s12275-014-3578-2
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The AcrAB-TolC multidrug efflux pump confers resistance to Escherichia coli against many antibiotics and toxic compounds. The TolC protein is an outer membrane factor that participates in the formation of type I secretion systems. The genome of Vibrio vulnificus encodes two proteins homologous to the E. coli TolC, designated TolCV1 and TolCV2. Here, we show that both TolCV1 and TolCV2 partially complement the E. coli TolC function and physically interact with the membrane fusion protein AcrA, a component of the E. coli AcrAB-TolC efflux pump. Using site-directed mutational analyses and an in vivo cross-linking assay, we demonstrated that the α-barrel tip region of TolC homologs plays a critical role in the formation of functional AcrAB-TolC efflux pumps. Our findings suggest the adapter bridging model as a general assembly mechanism for tripartite drug efflux pumps in Gram-negative bacteria.
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Citations
Citations to this article as recorded by - Functions and Regulation of the Outer Membrane Protein TolC in Vibrio Species
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