- Biodegradation of plastics: mining of plastic-degrading microorganisms and enzymes using metagenomics approaches
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Dae-Wi Kim , Jae-Hyung Ahn , Chang-Jun Cha
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J. Microbiol. 2022;60(10):969-976. Published online September 27, 2022
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DOI: https://doi.org/10.1007/s12275-022-2313-7
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Plastic pollution exacerbated by the excessive use of synthetic
plastics and its recalcitrance has been recognized among the
most pressing global threats. Microbial degradation of plastics
has gained attention as a possible eco-friendly countermeasure,
as several studies have shown microbial metabolic
capabilities as potential degraders of various synthetic plastics.
However, still defined biochemical mechanisms of biodegradation
for the most plastics remain elusive, because the
widely used culture-dependent approach can access only a
very limited amount of the metabolic potential in each microbiome.
A culture-independent approach, including metagenomics,
is becoming increasingly important in the mining
of novel plastic-degrading enzymes, considering its more expanded
coverage on the microbial metabolism in microbiomes.
Here, we described the advantages and drawbacks associated
with four different metagenomics approaches (microbial community
analysis, functional metagenomics, targeted gene sequencing,
and whole metagenome sequencing) for the mining
of plastic-degrading microorganisms and enzymes from
the plastisphere. Among these approaches, whole metagenome
sequencing has been recognized among the most powerful
tools that allow researchers access to the entire metabolic potential
of a microbiome. Accordingly, we suggest strategies
that will help to identify plastisphere-enriched sequences as
de novo plastic-degrading enzymes using the whole metagenome
sequencing approach. We anticipate that new strategies
for metagenomics approaches will continue to be developed
and facilitate to identify novel plastic-degrading microorganisms
and enzymes from microbiomes.
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Citations
Citations to this article as recorded by  - Towards a circular plastics economy: synchronising material design, hybrid processing, digital logistics, and adaptive policy
Maneesha P. Ginige, Andrew C. Warden, Anna H. Kaksonen
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Quyuan Xiong, Guangyu Liu, Shipeng Gao, Yuechuo Hao, Cheng Li, Jingwen Liu, Jiasong Huang, Anthony J. Sinskey, Yan Zhang, Xiong Chen, Yafang Sun, Xueyun Zheng
New Biotechnology.2026; 93: 246. CrossRef - Genome mining and screening for plastic-degrading potential in marine bacteria
Rafaela Perdigão, Diogo A. M. Alexandrino, Maria F. Carvalho, Catarina Magalhães, C. Marisa R. Almeida, Ana P. Mucha
Applied Microbiology and Biotechnology.2026;[Epub] CrossRef - Distribution characteristics and potential microbial degradation mechanisms of microplastics in oyster aquaculture areas of southern China
Hui Zhao, Wenxue Che, Xiao Tan, Yuhan Shen, Yue Xu, Ying Man
Journal of Hazardous Materials.2026; 511: 142136. CrossRef - Microbial consortium driven degradation of mixed microplastics: systematic review on enzymes and omics-based insights
Akansha Chauhan, Deenan Santhiya, Jai Gopal Sharma
Bioresource Technology.2026; 456: 134885. CrossRef - From prediction to validation: Critical assessment of computational plastizyme discovery pipelines for plastic biodegradation
Haritha Rajan, Suja Purushothaman Devipriya, Sarita G. Bhat
Journal of Hazardous Materials: Plastics.2026; 4: 100066. CrossRef - Integrative frameworks for plastic biodegradation in insect–microbiome systems: mechanistic insights, emerging multi-omics and enzyme engineering perspectives
Haritha Rajan, Suja Purushothaman Devipriya, Sarita G. Bhat
Biodegradation.2026;[Epub] CrossRef - Microbial and Enzymatic Degradation of Nylon: Mechanisms, Diversity, and Biotechnological Application
Sun-Yong Jung, Min-Seo Kim, Seung-Do Yun, Hyeoncheol Francis Son, Soo-Jin Yeom
Journal of Microbiology and Biotechnology.2026;[Epub] CrossRef - Bugs to biocatalysts: insect gut consortia for plastic degradation – A review
Krishnamoorthi Akash, Natarajan Mathimaran, Jothi Kanmani Bharathi, Rengasamy Parthasarathi, Arumugam Kanagavalli, Nidhi Dubey
Journal of Environmental Chemical Engineering.2026; : 125542. CrossRef - Advanced biotechnological tools towards achieving United Nations Sustainable Development Goals (UNSDGs) for mitigation of microplastics from environments: a review
Mukesh Kumar, Veena Chaudhary, Ravi Kumar, Manoj Kumar Yadav, Chetan Chauhan, Satya Prakash, Devanshu Shukla, Rishubh Motla, Krishna Kaushik, Virendra Pal, Mahesh Kumar, Rajat Singh, Arul Lal Srivastav
Discover Sustainability.2025;[Epub] CrossRef - Vaal’s Microplastic Burden: Uncovering the Fate of Microplastics in Emfuleni Municipality’s Wastewater Treatment Systems, Gauteng, South Africa
Tebogo Maleka, Richard Greenfield, Sudhakar Muniyasamy, Lee-Ann Modley
Sustainability.2025; 17(5): 2211. CrossRef - Unlocking the potential of Shewanella in metabolic engineering: Current status, challenges, and opportunities
Yi-Nan Liu, Zhourui Liu, Jian Liu, Yidan Hu, Bin Cao
Metabolic Engineering.2025; 89: 1. CrossRef - Exploring the Role of Plant Growth-Promoting Bacteria in Biodegradation of Plastic: A Review
Haris Maqbool, Fazal Ur Rehman, Izhar Khan, Nadeem Ullah, Muhammad Anwar Sajad, Nazir Mohammad, Maria Kalsoom, Shafiq Ur Rehman, Muhammad Farooq Hussain Munis, Malka Saba, Hassan Javed Chaudhary
Water, Air, & Soil Pollution.2025;[Epub] CrossRef - XenoBug: machine learning-based tool to predict pollutant-degrading enzymes from environmental metagenomes
Aditya S Malwe, Usha Longwani, Vineet K Sharma
NAR Genomics and Bioinformatics.2025;[Epub] CrossRef - Microbial diversity analysis of municipal solid waste landfills soils of Delhi (NCR) and plastic dump sites of Uttar Pradesh region of India and their function prediction for plastic degrading enzymes
Viral Kumar Tiwari, Akanksha Vishwakarma, Digvijay Verma, Monica Sharma
World Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef - The Individual and Combined Effects of Microplastics and Antibiotics on Soil Microbial Metabolic Limitation and Carbon Use Efficiency
Qiuyue Zhang, Yi Tang, Yanjiao Wang, Pengfei Cheng, Lianghui Li, Babar Iqbal, Tingting Zhao, Ruoyu Guo, Xiaojun Zheng, Guanlin Li, Daolin Du
Land Degradation & Development.2025; 36(9): 2955. CrossRef - From biofilms to biocatalysts: Innovations in plastic biodegradation for environmental sustainability
Slavica Porobic Katnic, Ram K. Gupta
Journal of Environmental Management.2025; 374: 124192. CrossRef - Construction of microbial systems for polyethylene terephthalate degradation
Dingkun He, Yichen Gong, Mingzhu Ding, Yingjin Yuan
Synthetic and Systems Biotechnology.2025; 10(4): 1341. CrossRef - Eco-friendly all-biomass pipes with high toughness, low internal stress, and self-degradation for sustainable agricultural irrigation
Yujie Ding, Xun Zhang, Jing Zhou, Tingting Yang, Xiaotong Fu, Chenlu Jiao, Dongdong Ye
Cellulose.2025; 32(14): 8359. CrossRef - Insights into polyolefin oligomer stress regulation of microbial communities and degradation mechanisms of polyethylene
Yizhi Liu, Donghuan Su, Yilin Zhao, Xianrui Liu, Yiming Zhang, Gang Xiao, Zequn Tang, Jan Baeyens, Haijia Su
Journal of Environmental Management.2025; 395: 127969. CrossRef - Microplastics: environmental distribution and degradation by aerobic/anaerobic microorganisms
JiaJun FAN, YangWenDi YANG, LiSi JIANG, LiXin GUO, TianTian ZHENG, Yang ZHANG
SCIENTIA SINICA Vitae.2025; 55(12): 2598. CrossRef - Molecular docking and metagenomics assisted mitigation of microplastic pollution
Dinesh Parida, Konica Katare, Atmaadeep Ganguly, Disha Chakraborty, Oisi Konar, Regina Nogueira, Kiran Bala
Chemosphere.2024; 351: 141271. CrossRef - Recent advances in screening and identification of PET-degrading enzymes
Shengwei Sun
Environmental Reviews.2024; 32(3): 294. CrossRef - Metagenomic analysis of soil from landfill site reveals a diverse microbial community involved in plastic degradation
Akhilesh Kumar, Sudarshan Singh Lakhawat, Kashmir Singh, Vikram Kumar, Kumar Sambhav Verma, Umesh Kumar Dwivedi, S.L. Kothari, Naveen Malik, Pushpender Kumar Sharma
Journal of Hazardous Materials.2024; 480: 135804. CrossRef - PEZy-miner: An artificial intelligence driven approach for the discovery of plastic-degrading enzyme candidates
Renjing Jiang, Zhenrui Yue, Lanyu Shang, Dong Wang, Na Wei
Metabolic Engineering Communications.2024; 19: e00248. CrossRef - Mining strategies for isolating plastic-degrading microorganisms
Ziyao Zhang, Qi Zhang, Huihui Yang, Li Cui, Haifeng Qian
Environmental Pollution.2024; 346: 123572. CrossRef - Microenvironment of Landfill-Mined Soil-Like Fractions (LMSF): Evaluating the Polymer Composting Potential Using Metagenomics and Geoenvironmental Characterization
Arnab Banerjee, Charakho N. Chah, Manoj Kumar Dhal, Kshitij Madhu, Kiran Vilas Dhobale, Bharat Rattan, Vimal Katiyar, Sreedeep Sekharan
International Journal of Environmental Research.2024;[Epub] CrossRef - Progress in polystyrene biodegradation by insect gut microbiota
Luhui Xu, Zelin Li, Liuwei Wang, Zihang Xu, Shulin Zhang, Qinghua Zhang
World Journal of Microbiology and Biotechnology.2024;[Epub] CrossRef - Recent trends in microbial and enzymatic plastic degradation: a solution for plastic pollution predicaments
Swagata Lakshmi Dhali, Dinesh Parida, Bikash Kumar, Kiran Bala
Biotechnology for Sustainable Materials.2024;[Epub] CrossRef - Deconstructing PET: Advances in enzyme engineering for sustainable plastic degradation
Jiaxin Yao, Yao Liu, Zhenghua Gu, Liang Zhang, Zhongpeng Guo
Chemical Engineering Journal.2024; 497: 154183. CrossRef - Mechanistic Insights into Cellular and Molecular Basis of Protein‐Nanoplastic Interactions
Goutami Naidu, Nupur Nagar, Krishna Mohan Poluri
Small.2024;[Epub] CrossRef - Searching for new plastic-degrading enzymes from the plastisphere of alpine soils using a metagenomic mining approach
Beat Frey, Margherita Aiesi, Basil M. Rast, Joel Rüthi, Jérôme Julmi, Beat Stierli, Weihong Qi, Ivano Brunner, Sinosh Skarlyachan
PLOS ONE.2024; 19(4): e0300503. CrossRef - Discovery and characterization of two novel polyethylene terephthalate hydrolases: One from a bacterium identified in human feces and one from the Streptomyces genus
Zhengyang Han, Mario Roque Huanca Nina, Xiaoyan Zhang, Hanyao Huang, Daidi Fan, Yunpeng Bai
Journal of Hazardous Materials.2024; 472: 134532. CrossRef - Synthesis of Renewable and Cost-Effective Bioplastic from Apple Waste: Physicochemical and Biodegradability Studies
Nicholas Yung Li Loh, Hui Ying Pang, Wan Ting Tee, Billie Yan Zhang Hiew, Svenja Hanson, Siewhui Chong, Suchithra Thangalazhy-Gopakumar, Suyin Gan, Lai Yee Lee
Waste and Biomass Valorization.2023; 14(10): 3235. CrossRef - Validated High-Throughput Screening System for Directed Evolution of Nylon-Depolymerizing Enzymes
Hendrik Puetz, Christoph Janknecht, Francisca Contreras, Mariia Vorobii, Tetiana Kurkina, Ulrich Schwaneberg
ACS Sustainable Chemistry & Engineering.2023; 11(43): 15513. CrossRef - Perspectives on biorefineries in microbial production of fuels and chemicals
Stephen R. Decker, Roman Brunecky, John M. Yarbrough, Venkataramanan Subramanian
Frontiers in Industrial Microbiology.2023;[Epub] CrossRef - Microbial Enzyme Biotechnology to Reach Plastic Waste Circularity: Current Status, Problems and Perspectives
Marco Orlando, Gianluca Molla, Pietro Castellani, Valentina Pirillo, Vincenzo Torretta, Navarro Ferronato
International Journal of Molecular Sciences.2023; 24(4): 3877. CrossRef -
Trends in
in-silico
guided engineering of efficient polyethylene terephthalate (PET) hydrolyzing enzymes to enable bio-recycling and upcycling of PET
Sandhya K. Jayasekara, Hriday Dhar Joni, Bhagya Jayantha, Lakshika Dissanayake, Christopher Mandrell, Manuka M.S. Sinharage, Ryan Molitor, Thushari Jayasekara, Poopalasingam Sivakumar, Lahiru N. Jayakody
Computational and Structural Biotechnology Journal.2023; 21: 3513. CrossRef - From waste to resource: Metagenomics uncovers the molecular ecological resources for plastic degradation in estuaries of South China
Lei Zhou, Shilei Sang, Jiajie Li, Yusen Li, Dapeng Wang, Lihong Gan, Zelong Zhao, Jun Wang
Water Research.2023; 242: 120270. CrossRef - Biodegradation of Different Types of Bioplastics through Composting—A Recent Trend in Green Recycling
Wazir Aitizaz Ahsan, Adnan Hussain, Chitsan Lin, Minh Ky Nguyen
Catalysts.2023; 13(2): 294. CrossRef - Biodegradation of Poly(ethylene terephthalate) by Bacillus safensis YX8
Caiting Zeng, Fanghui Ding, Jie Zhou, Weiliang Dong, Zhongli Cui, Xin Yan
International Journal of Molecular Sciences.2023; 24(22): 16434. CrossRef
- Analysis of phylogenetic markers for classification of a hydrogen peroxide producing Streptococcus oralis isolated from saliva by a newly devised differential medium
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Ha Pham , Thi Dieu Thuy Tran , Youri Yang , Jae-Hyung Ahn , Hor-Gil Hur , Yong-Hak Kim
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J. Microbiol. 2022;60(8):795-805. Published online July 14, 2022
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DOI: https://doi.org/10.1007/s12275-022-2261-2
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1,045
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Hydrogen peroxide (H2O2) is produced by alpha-hemolytic
streptococci in aerobic conditions. However, the suitable method
for detection of H2O2-producing streptococci in oral
microbiota has not been setup. Here we show that o-dianisidine
dye and horseradish peroxidase were useful in tryptic
soy agar medium to detect and isolate H2O2-producing
bacteria with the detection limit of one target colony in > 106
colony-forming units. As a proof, we isolated the strain HP01
(KCTC 21190) from a saliva sample using the medium and
analyzed its characteristics. Further tests showed that the strain
HP01 belongs to Streptococcus oralis in the Mitis group and
characteristically forms short-chain streptococcal cells with
a high capacity of acid tolerance and biofilm formation. The
genome analysis revealed divergence of the strain HP01 from
the type strains of S. oralis. They showed distinctive phylogenetic
distances in their ROS-scavenging proteins, including
superoxide dismutase SodA, thioredoxin TrxA, thioredoxin
reductase TrxB, thioredoxin-like protein YtpP, and glutaredoxin-
like protein NrdH, as well as a large number of antimicrobial
resistance genes and horizontally transferred genes.
The concatenated ROS-scavenging protein sequence can be
used to identify and evaluate Streptococcus species and subspecies
based on phylogenetic analysis.
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Citations
Citations to this article as recorded by -
Comparative genomic analysis of the
Pediococcus
genus reveals functional diversity for fermentation and probiotic applications
Nattarika Chaichana, Jirasa Boonsan, Thitaporn Dechathai, Sirikan Suwannasin, Kamonnut Singkhamanan, Monwadee Wonglapsuwan, Rattanaruji Pomwised, Komwit Surachat
Computational and Structural Biotechnology Journal.2025; 27: 4597. CrossRef - Alleviation of H2O2 toxicity by extracellular catalases in the phycosphere of Microcystis aeruginosa
Yerim Park, Wonjae Kim, Yeji Cha, Minkyung Kim, Woojun Park
Harmful Algae.2024; 137: 102680. CrossRef
- Paenibacillus nuruki sp. nov., isolated from Nuruk, a Korean fermentation starter
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Soo-Jin Kim , Hayoung Cho , Jae-Hyung Ahn , Hang-Yeon Weon , Jae-Ho Joa , Jeong-Seon Kim , Soon-Wo Kwon
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J. Microbiol. 2019;57(10):836-841. Published online June 27, 2019
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DOI: https://doi.org/10.1007/s12275-019-9118-3
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1,077
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6
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6
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Abstract
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A Gram-stain-positive, rod-shaped, non-endospore-forming,
motile by means of peritrichous flagella, facultatively anaerobic
bacterium designated TI45-13arT was isolated from Nuruk,
a Korean traditional Makgeolli fermentation starter. It grew
at 4–35°C (optimum, 28–30°C), pH 5.0–9.0 (optimum, pH
7.0) and NaCl concentrations up to 5% (w/v). Phylogenetic
trees generated using 16S rRNA gene sequences revealed that
strain TI45-13arT belonged to the genus Paenibacillus and
showed the highest sequence similarities with Paenibacillus
kyungheensis DCY88T (98.5%), Paenibacillus hordei RH-N24T
(98.4%) and Paenibacillus nicotianae YIM h-19T (98.1%). The
major fatty acid was anteiso-C15:0. The DNA G+C content
was 39.0 mol%, and MK-7 was the predominant isoprenoid
quinone. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol,
phosphatidylethanolamine, three unidentified
glycolipids, and one unidentified aminoglycolipid. The
cell-wall peptidoglycan contained meso-diaminopimelic acid.
On the basis of polyphasic taxonomy study, it was suggested
that strain TI45-13arT represents a novel species within the genus
Paenibacillus for which the name Paenibacillus nuruki
sp. nov. is proposed. The type strain was TI45-13arT (= KACC
18728T = NBRC 112013T).
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Citations
Citations to this article as recorded by - Anti-aging potential of the endophyte Paenibacillus nuruki in a Saccharomyces cerevisiae lifespan model
Yancho Zarev, Ivan Ivanov, Martin Dimitrov, Iliana Ionkova, Teodora Todorova
Pharmacia.2026;[Epub] CrossRef - Metagenomic and meta-metabolomic analysis of traditional Korean rice vinegar productions shows a large variability between producers
Louise Vermote, Byung Hee Chun, Shehzad Abid Khan, Luc De Vuyst, Che Ok Jeon, Stefan Weckx
International Journal of Food Microbiology.2025; 440: 111283. CrossRef -
Paenibacillus dendrobii sp. nov., an indole-3-acetic acid-producing endophytic bacterium isolated from Dendrobium nobile
Yadong Hu, Hongjie Li, Yaoyi Chen, Qiling Zhang, Shigang Zheng, Dan Rao, Ze Chun, Ruoxi Zhao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Makgeolli - The Traditional Choice of Korean Fermented Beverage from Cereal: An Overview on its Composition and Health Benefits
Ganesh SHIMOGA, Sang-Youn KIM
Food Science and Technology.2022;[Epub] CrossRef - Integrative Metagenomics–Metabolomics for Analyzing the Relationship Between Microorganisms and Non-volatile Profiles of Traditional Xiaoqu
Chi Zhao, Wei Su, Yu Mu, Yingchun Mu, Li Jiang
Frontiers in Microbiology.2021;[Epub] CrossRef - Flaviflexus ciconiae sp. nov., isolated from the faeces of the oriental stork, Ciconia boyciana
Jae-Yun Lee, Woorim Kang, Pil Soo Kim, So-Yeon Lee, Na-Ri Shin, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Yun-Seok Jeong, Jeong Eun Han, Mi-Ja Jung, Dong-Wook Hyun, Hyun Sik Kim, Euon Jung Tak, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5439. CrossRef
- Flavisolibacter aluminii sp. nov., a novel member of the genus Flavisolibacter isolated from an automotive air conditioning system
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Hyosun Lee , Dong-Uk Kim , Suyeon Lee , Song-Gun Kim , A-Young Park , Jae-Hyung Ahn , Jong-Ok Ka
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J. Microbiol. 2019;57(1):18-22. Published online November 19, 2018
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DOI: https://doi.org/10.1007/s12275-019-8219-3
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1,024
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3
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A Gram-stain-negative, aerobic, non-motile, rod-shaped, and
yellow-pigmented bacterium, designated strain ID1709T, was
isolated from an automotive air conditioning system collected
in Korea. Analysis of 16S rRNA gene sequence similarity
showed that strain ID1709T had 92.2–94.3% similarities with
the type strains of members of the genus Flavisolibacter. The
major cellular fatty acids were iso-C15:0, iso-C15:1 G, iso-C17:0
3-OH, and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c). The
predominant respiratory quinone was MK-7. The polar lipids
comprised phosphatidylethanolamine, aminoglycophospholipid,
two unidentified aminolipids, and three unidentified
lipids. The DNA G + C content of the strain was 35.6 mol%.
Based on phenotypic, chemotaxonomic, and genotypic data,
strain ID1709T represents a novel species in the genus Flavisolibacter,
for which the name Flavisolibacter aluminii sp.
nov. (= KACC 19451T = KCTC 52778T = NBRC 112870T), is
proposed.
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Citations
Citations to this article as recorded by - Validation List no. 229: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Insights into the Response and Evolution of Microbial Communities During Long-Term Natural Remediation of Contaminated Abandoned Shale Gas Wells
Hongyang Ren, Shuangli Chen, Jiajian Shang, Yujia Gao, Yuanpeng Deng, Zhaoyang Wang, Guojun Hu, Bing Wang
Water, Air, & Soil Pollution.2024;[Epub] CrossRef - Metallococcus carri gen. nov., sp. nov., a novel member of the family Dermacoccaceae isolated from an automotive air conditioning system
Jong Sung Lim, Hyosun Lee, Jigwan Son, Song-Gun Kim, Dong-Uk Kim, Jong-Ok Ka
Archives of Microbiology.2021; 203(7): 4073. CrossRef
- Tardibacter chloracetimidivorans gen. nov., sp. nov., a novel member of the family Sphingomonadaceae isolated from an agricultural soil from Jeju Island in Republic of Korea
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Hyosun Lee , Dong-Uk Kim , Sooyeon Park , Jung-Hoon Yoon , Jae-Hyung Ahn , Jong-Ok Ka
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J. Microbiol. 2018;56(5):324-330. Published online May 2, 2018
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DOI: https://doi.org/10.1007/s12275-018-7455-2
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882
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4
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Abstract
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A pale yellow bacterial strain, designated JJ-A5T, was isolated
form an agricultural soil from Jeju Island in Republic of
Korea. Cells of the strain were Gram-stain-negative, motile,
flagellated and rod-shaped. The strain grew at 15–30°C, pH
6.0–9.0, and in the presence of 0–1.5% (w/v) NaCl. Growth
occurred on R2A, but not on Luria-Bertani agar, nutrient agar,
trypticase soy agar and MacConkey agar. The strain utilized
alachlor as a sole carbon source for growth. The strain JJ-A5T
showed 16S rRNA gene sequence similarities lower than
95.4% with members of the family Sphingomonadaceae. Phylogenetic
analysis showed that the strain belongs to the family
Sphingomonadaceae and strain JJ-A5T was distinctly separated
from established genera of this family. The strain contained
Q-10 as dominant ubiquinone and spermidine as major
polyamine. The predominant cellular fatty acids were
summed feature 8 (C18:1 ω7c and/or C18:1 ω6c), summed feature
3 (C16:1 ω7c and/or C16:1 ω6c), 11-methyl C18:1 ω7c, C16:0
and C14:0 2-OH. The major polar lipids were phosphatidylethanolamine,
phosphatidylglycerol, sphingoglycolipid, and
phosphatidylcholine. The DNA G + C content of the strain
was 62.7 mol%. On the basis of the phenotypic, genomic and
chemotaxonomic characteristics, strain JJ-A5T is considered
to represent a novel genus and species within the family
Sphingomonadaceae, for which the name Tardibacter chloracetimidivorans
gen. nov., sp. nov. is proposed. The type
strain of Tardibacter chloracetimidivorans is JJ-A5T (= KACC
19450T = NBRC 113160T).
-
Citations
Citations to this article as recorded by - Interactive effects of maize straw incorporation and improved irrigation on soil physicochemical properties and microbial community structure in saline–alkaline soil
Wenbo Chai, Hanyuan Xu, Chao Yuan, Shufen Li, Hongtao Li, Qing Zhu, Wei Ji, Ming Chi, Jun Wang, Chongxing Xin
Frontiers in Microbiology.2026;[Epub] CrossRef - Removal of alachlor from the water/soil environments: The significance of microbial remediation and its biochemical mechanisms
Zeren Li, Mengyi Chen, Wen-Juan Chen, Mingqiu Liu, Guiling Si, Xixian Zhu, Kalpana Bhatt, Sandhya Mishra, Mohamed A. Ghorab, Shaohua Chen
Journal of Water Process Engineering.2024; 68: 106387. CrossRef - Processes governing the environmental fates of alachlor in soil and aqueous media: a critical review
M. U. Ghani, H. N. Asghar, H. Nadeem, M. Shahid, M. A. Zeshan, A. Niaz, S. Hussain, S. Hussain
International Journal of Environmental Science and Technology.2022; 19(8): 8043. CrossRef - New Associations of Aerobic Bacteria that Actively Decompose Lindane
E. A. Nazarova, D. O. Egorova, L. N. Anan’ina, E. S. Korsakova, E. G. Plotnikova
Applied Biochemistry and Microbiology.2021; 57(5): 643. CrossRef
- Effects of diet type, developmental stage, and gut compartment in the gut bacterial communities of two Cerambycidae species (Coleoptera)
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Jeong Myeong Kim , Min-Young Choi , Jae-Woo Kim , Shin Ae Lee , Jae-Hyung Ahn , Jaekyeong Song , Seong-Hyun Kim , Hang-Yeon Weon
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J. Microbiol. 2017;55(1):21-30. Published online December 30, 2016
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DOI: https://doi.org/10.1007/s12275-017-6561-x
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1,062
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Abstract
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The gut bacterial community of wood-feeding beetles has
been examined for its role on plant digestion and biocontrol
method
development. Monochamus alternatus and Psacothea
hilaris, both belonging to the subfamily Lamiinae, are woodfeeding
beetles found in eastern Asia and Europe and generally
considered as destructive pests for pine and mulberry
trees, respectively. However, limited reports exist on the gut
bacterial communities in these species. Here, we characterized
gut bacterial community compositions in larva and imago of
each insect species reared with host tree logs and artificial
diets as food sources. High-throughput 454 pyrosequencing
of bacterial 16S rRNA gene revealed 225 operational taxonomic
units (OTUs) based on a 97% sequences similarity cutoff
from 138,279 sequence reads, the majority of which were
derived from Proteobacteria (48.2%), Firmicutes (45.5%), and
Actinobacteria (5.2%). The OTU network analysis revealed
7 modules with densely connected OTUs in specific gut samples,
in which the distributions of Lactococcus-, Kluyvera-,
Serratia-, and Enterococcus-related OTUs were distinct between
diet types or developmental stages of the host insects.
The gut bacterial communities were separated on a detrended
correspondence analysis (DCA) plot and by c-means fuzzy
clustering analysis, according to diet type. The results from
this study suggest that diet was the main determinant for gut
bacterial community composition in the two beetles.
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Citations
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Huanhuan Li, Liancheng Liu, Gonghua Lin, Fang Zhao, Rujiao Sun, Bo He, Zuhao Huang
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- Soil pH and electrical conductivity are key edaphic factors shaping bacterial communities of greenhouse soils in Korea
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Jeong Myeong Kim , An-Sung Roh , Seung-Chul Choi , Eun-Jeong Kim , Moon-Tae Choi , Byung-Koo Ahn , Sun-Kuk Kim , Young-Han Lee , Jae-Ho Joa , Seong-Soo Kang , Shin Ae Lee , Jae-Hyung Ahn , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2016;54(12):838-845. Published online November 26, 2016
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DOI: https://doi.org/10.1007/s12275-016-6526-5
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Abstract
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Soil microorganisms play an essential role in soil ecosystem
processes such as organic matter decomposition, nutrient
cycling, and plant nutrient availability. The land use for greenhouse
cultivation has been increasing continuously, which
involves an intensive input of agricultural materials to enhance
productivity; however, relatively little is known about
bacterial communities in greenhouse soils. To assess the effects
of environmental factors on the soil bacterial diversity
and community composition, a total of 187 greenhouse soil
samples collected across Korea were subjected to bacterial
16S rRNA gene pyrosequencing analysis. A total of 11,865
operational taxonomic units at a 97% similarity cutoff level
were detected from 847,560 sequences. Among nine soil factors
evaluated; pH, electrical conductivity (EC), exchangeable
cations (Ca2+, Mg2+, Na+, and K+), available P2O5, organic
matter, and NO3-N, soil pH was most strongly correlated
with bacterial richness (polynomial regression, pH: R2 =
0.1683, P < 0.001) and diversity (pH: R2 = 0.1765, P < 0.001).
Community dissimilarities (Bray-Curtis distance) were positively
correlated with Euclidean distance for pH and EC
(Mantel test, pH: r = 0.2672, P < 0.001; EC: r = 0.1473, P < 0.001). Among dominant phyla (> 1%), the relative abundances
of Proteobacteria, Gemmatimonadetes, Acidobacteria,
Bacteroidetes, Chloroflexi, and Planctomycetes were also more
strongly correlated with pH and EC values, compared with
other soil cation contents, such as Ca2+, Mg2+, Na+, and K+.
Our results suggest that, despite the heterogeneity of various
environmental variables, the bacterial communities of
the intensively cultivated greenhouse soils were particularly
influenced by soil pH and EC. These findings therefore shed
light on the soil microbial ecology of greenhouse cultivation,
which should be helpful for devising effective management
strategies to enhance soil microbial diversity and improving
crop productivity.
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Science of The Total Environment.2024; 917: 170464. CrossRef - Vermicompost Supply Enhances Fragrant-Rice Yield by Improving Soil Fertility and Eukaryotic Microbial Community Composition under Environmental Stress Conditions
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Environmental Pollution.2024; 360: 124619. CrossRef - Unravelling the influence of microplastics with/without additives on radish (Raphanus sativus) and microbiota in two agricultural soils differing in pH
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Journal of Hazardous Materials.2024; 478: 135535. CrossRef - Unveiling soil bacterial ecosystems in andean citrus orchards of Santander, Colombia
Genis Andrés Castillo-Villamizar, Valentina Tapia-Perdomo, Julieth Maldonado-Pava, Pedro Santamaría-Gálvis, Lizbeth Sayavedra, Jorge Hernandez-Torres, Edinson Puentes-Cala
Frontiers in Ecology and Evolution.2024;[Epub] CrossRef - Analysis of microbial communities in wheat, alfalfa, and oat crops after Tilletia laevis Kühn infection
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Frontiers in Microbiology.2024;[Epub] CrossRef - Uptake and translocation of fungicide picarbutrazox in greenhouse cabbage: the significance of translocation factors and home processing
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Journal of Cleaner Production.2023; 418: 138194. CrossRef - New interactive functional indicator approach for river health assessment in an Asian temperate river: Comprehensive analysis of water chemistry, physical habitat, land use, and the biological disturbance of invasive alien species
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Ecological Indicators.2023; 157: 111212. CrossRef - Response of the Soil Fungal Community and Its Function during the Conversion of Forestland to Tea Plantations: A Case Study in Southeast China
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Microbial Ecology.2023; 86(4): 3027. CrossRef - Predicting microbial responses to changes in soil physical and chemical properties under different land management
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Applied Soil Ecology.2023; 188: 104878. CrossRef - Bacterial and archaeal communities in saline soils from a Los Negritos geothermal area in Mexico
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Pedosphere.2023; 33(2): 312. CrossRef - Heavy Metal Distribution and Microbial Diversity of the Surrounding Soil and Tailings of Two Cu Mines in China
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Water, Air, & Soil Pollution.2023;[Epub] CrossRef - Phosphorus addition modifies the bacterial community structure in rhizosphere of Achnatherum inebrians by influencing the soil properties and modulates the Epichloë gansuensis-mediated root exudate profiles
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Plant and Soil.2023; 491(1-2): 543. CrossRef - Effects of 13C isotope-labeled allelochemicals on the growth of the invasive plant Alternanthera philoxeroides
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Frontiers in Microbiology.2023;[Epub] CrossRef - Plant ash prevents acid mine drainage from sulfur-bearing tailings through multiple actions — A low-cost alkaline material
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Applied Geochemistry.2023; 155: 105702. CrossRef - Natural restoration alters soil microbial community structure, but has contrasting effects on the diversity of bacterial and fungal assemblages in salinized grasslands
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Science of The Total Environment.2023; 891: 164726. CrossRef - Spatial controls of methane uptake in upland soils across climatic and geological regions in Greenland
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Chemosphere.2023; 313: 137501. CrossRef - Soil Bacterial Community Structure and Physicochemical Influencing Factors of Artificial Haloxylon ammodendron Forest in the Sand Blocking and Fixing Belt of Minqin, China
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Forests.2023; 14(11): 2244. CrossRef - Relationships between Rhizosphere Environments and Growth of 10-Year-Old Wild-Simulated Ginseng
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Agronomy.2023; 13(5): 1313. CrossRef - Effect comparisons of different conditioners and microbial agents on the degradation of estrogens during dairy manure composting
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Frontiers in Microbiology.2023;[Epub] CrossRef - Does biochar addition improve soil physicochemical properties, bacterial community and alfalfa growth for saline soils?
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Agronomy.2023; 13(12): 2984. CrossRef - Evaluation of a subtropical maize-rice rotation system maintained under long-term fertilizer inputs for sustainable intensification of agriculture
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Applied Soil Ecology.2023; 184: 104772. CrossRef - Metagenomic analysis displays the potential predictive biodegradation pathways of the persistent pesticides in agricultural soil with a long record of pesticide usage
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Microbiological Research.2022; 261: 127081. CrossRef - Soil microbial community responses to the application of a combined amendment in a historical zinc smelting area
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Land Degradation & Development.2022; 33(1): 117. CrossRef - Selective Enrichment Method for Isolation of Efficient Phosphate Solubilizing Bacteria from Soil
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Communications in Soil Science and Plant Analysis.2022; 53(12): 1532. CrossRef - Impact of hexachlorocyclohexane addition on the composition and potential functions of the bacterial community in red and purple paddy soil
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Environmental Pollution.2022; 297: 118795. CrossRef - Remediation of Cd-, Pb-, Cu-, and Zn-contaminated soil using cow bone meal and oyster shell meal
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CATENA.2022; 209: 105828. CrossRef - Metagenomic analysis of bacterial communities of Wadi Namar Lake, Riyadh, Saudi Arabia
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Scientific Reports.2022;[Epub] CrossRef - Influence of Rosaceous Species and Driving Factors on Differentiation of Rhizospheric Bacteria in a Deciduous Broad-Leaved Forest
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Frontiers in Microbiology.2022;[Epub] CrossRef - Cu and Zn exert a greater influence on antibiotic resistance and its transfer than doxycycline in agricultural soils
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Journal of Hazardous Materials.2022; 423: 127042. CrossRef - Assessment of Fertilizer Quality in Horse Waste-Based Bokashi Fertilizer Formulations
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Agronomy.2022; 12(4): 937. CrossRef - Effects of earthworms and arbuscular mycorrhizal fungi on improvement of fertility and microbial communities of soils heavily polluted by cadmium
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Chemosphere.2022; 286: 131567. CrossRef - Bacterial Community with Plant Growth-Promoting Potential Associated to Pioneer Plants from an Active Mexican Volcanic Complex
Clara Ivette Rincón-Molina, Esperanza Martínez-Romero, José Luis Aguirre-Noyola, Luis Alberto Manzano-Gómez, Adalberto Zenteno-Rojas, Marco Antonio Rogel, Francisco Alexander Rincón-Molina, Víctor Manuel Ruíz-Valdiviezo, Reiner Rincón-Rosales
Microorganisms.2022; 10(8): 1568. CrossRef - Influences of land reclamation on soil bacterial communities of abandoned salt pans in the Yellow River Delta
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Land Degradation & Development.2022; 33(16): 3231. CrossRef - Physico-Chemical and microbiological analysis of the loopspruit river, north west province: A metagenomic approach
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Water Supply.2022;[Epub] CrossRef - Long-Term Effect of Alkali and Partially Neutralized Irrigation Water on Soil Quality
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Journal of Soil Science and Plant Nutrition.2022; 22(2): 1252. CrossRef - Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield
Lays Paulino Leonel, Ariane Bize, Mahendra Mariadassou, Cédric Midoux, Jerusa Schneider, Adriano Luiz Tonetti
Blue-Green Systems.2022; 4(2): 247. CrossRef - Reduced Chemical Fertilizer Combined With Bio-Organic Fertilizer Affects the Soil Microbial Community and Yield and Quality of Lettuce
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Frontiers in Microbiology.2022;[Epub] CrossRef - Optimization of carriers and packaging for effective biofertilizers to enhance Oryza sativa L. growth in paddy soil
Jakkapan Sakpirom, Tomorn Nunkaew, Eakalak Khan, Duangporn Kantachote
Rhizosphere.2021; 19: 100383. CrossRef - Improved immobilization of soil cadmium by regulating soil characteristics and microbial community through reductive soil disinfestation
Xin Li, Xuefeng Li, Yueyue Li, Xiongze Dai, Qingzhuang Zhang, Mi Zhang, Zhuqing Zhang, Yu Tao, Wenchao Chen, Mingxing Zhang, Xiangyu Zhou, Sha Yang, Yanqing Ma, Mostafa Zhran, Xuexiao Zou
Science of The Total Environment.2021; 778: 146222. CrossRef - Soil bacterial community functions and distribution after mining disturbance
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Soil Biology and Biochemistry.2021; 157: 108232. CrossRef - Pilot Study of Eco-Physiological Pepper Responses to Starfish-Based Organic Soil Amendments in Open-Field and Greenhouse Cultivations
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Horticulturae.2021; 7(10): 344. CrossRef - Effects of the Denitrification Inhibitor “Procyanidins” on the Diversity, Interactions, and Potential Functions of Rhizosphere-Associated Microbiome
Mylène Hugoni, William Galland, Solène Lecomte, Maxime Bruto, Mohamed Barakat, Florence Piola, Wafa Achouak, Feth el Zahar Haichar
Microorganisms.2021; 9(7): 1406. CrossRef - Prospective usage of magnesium potassium phosphate cement combined with Bougainvillea alba derived biochar to reduce Pb bioavailability in soil and its uptake by Spinacia oleracea L
Iqbal Naeem, Nasir Masood, Veysel Turan, Muhammad Iqbal
Ecotoxicology and Environmental Safety.2021; 208: 111723. CrossRef - Impacto ambiental del vertimiento de aguas servidas en aglomerados urbanos ilegales del municipio de Villavicencio, Colombia
Fabián Dario Cuadros Segura, Alvaro Javier Moyano Salcedo, Adrian Mateo Pabon Laverde, Jassbleydi Valentina Trujillo Arias
Tecnura.2021; 25(68): 43. CrossRef - Efficacy of chitosan-coated textile waste biochar applied to Cd-polluted soil for reducing Cd mobility in soil and its distribution in moringa (Moringa oleifera L.)
Muhammad Zubair, Pia Muhammad Adnan Ramzani, Bilal Rasool, Muhammad Asaf Khan, Mahmood ur-Rahman, Imran Akhtar, Veysel Turan, Hafiz Muhammad Tauqeer, Muniba Farhad, Shahbaz Ali Khan, Javed Iqbal, Muhammad Iqbal
Journal of Environmental Management.2021; 284: 112047. CrossRef - The effects of vermicompost and shell powder addition on Cd bioavailability, enzyme activity and bacterial community in Cd-contaminated soil: A field study
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Ecotoxicology and Environmental Safety.2021; 215: 112163. CrossRef - Diversity, structure, and composition of plant growth-promoting bacteria in soil from Brazilian Cerrado
Jailson do Nascimento Silva, Lucas William Mendes, Jadson Emanuel Lopes Antunes, Vania Maria Maciel Melo, Francisca Andrea da Silva Oliveira, Angela Celis de Almeida Lopes, Veronica Brito da Silva, Arthur Prudêncio de Araujo Pereira, Sergio Emilio Santos
Rhizosphere.2021; 20: 100435. CrossRef - Bioaccumulation of heavy metals in Stachys inflata and Scariola orientalis affected by particulate matters of a cement factory in central Iran
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Frontiers in Microbiology.2021;[Epub] CrossRef - Farmer Friendly Options for Sterilizing Farm Tools for the Control of Xanthomonas Wilt Disease of Banana
Walter Ocimati, Anthony Fredrick Tazuba, Guy Blomme
Frontiers in Agronomy.2021;[Epub] CrossRef - Green Fluorescent Protein-Tagged Bacillus axarquiensis TUBP1 Reduced Cotton Verticillium Wilt Incidence by Altering Soil Rhizosphere Microbial Communities
Chang Gao, Bo Wang, Guo-cai Ma, Hong Zeng
Current Microbiology.2021; 78(9): 3562. CrossRef - Effect of Bacillus mesonae H20-5 Treatment on Rhizospheric Bacterial Community of Tomato Plants under Salinity Stress
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The Plant Pathology Journal.2021; 37(6): 662. CrossRef - Study on the Rhizosphere Soil Microbial Community Structure Associated with Five Land Use Types in Jinchuan Mining Area
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E3S Web of Conferences.2021; 237: 01010. CrossRef - Chemical fertilizer reduction with organic fertilizer effectively improve soil fertility and microbial community from newly cultivated land in the Loess Plateau of China
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Applied Soil Ecology.2021; 165: 103966. CrossRef - Rhizosphere Microbiome Regulates the Growth of Mustard under Organic Greenhouse Cultivation
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Agriculture.2021; 11(10): 987. CrossRef - Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
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- Dynamics of bacterial communities in rice field soils as affected by different long-term fertilization practices
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Jae-Hyung Ahn , Shin Ae Lee , Jeong Myeong Kim , Myung-Sook Kim , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2016;54(11):724-731. Published online October 29, 2016
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DOI: https://doi.org/10.1007/s12275-016-6463-3
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Abstract
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Fertilization and the response of the soil microbial community
to the process significantly affect crop yield and the environment.
In this study, the seasonal variation in the bacterial
communities in rice field soil subjected to different
fertilization treatments for more than 50 years was investigated
using 16S rRNA sequencing. The simultaneous application
of inorganic fertilizers and rice straw compost (CAPK)
maintained the species richness of the bacterial communities
at levels higher than that in the case of non-fertilization (NF)
and application of inorganic fertilizers only (APK) in the initial
period of rice growth. The seasonal variation in the bacterial
community structure in the NF and APK plots showed
cyclic behavior, suggesting that the effect of season was important;
however, no such trend was observed in the CAPK
plot. In the CAPK plot, the relative abundances of putative
copiotrophs such as Bacteroidetes, Firmicutes, and Proteobacteria
were higher and those of putative oligotrophs such
as Acidobacteria and Plactomycetes were lower than those in
the other plots. The relative abundances of organotrophs with
respiratory metabolism, such as Actinobacteria, were lower
and those of chemoautotrophs that oxidize reduced iron and
sulfur compounds were higher in the CAPK plot, suggesting
greater carbon storage in this plot. Increased methane emission
and nitrogen deficiency, which were inferred from the
higher abundances of Methylocystis and Bradyrhizobium in
the CAPK plot, may be a negative effect of rice straw application;
thus, a solution for these should be considered to increase
the use of renewable resources in agricultural lands.
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- Siphonobacter intestinalis sp. nov., a bacterium isolated from the feces of Pseudorhynchus japonicus
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Shin Ae Lee , Jeong Myeong Kim , Jae-Hyung Ahn , Jae-Ho Joa , Soo-Jin Kim , Mee-Kyung Sang , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2016;54(11):709-712. Published online October 29, 2016
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DOI: https://doi.org/10.1007/s12275-016-6451-7
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934
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Abstract
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Strain 63MJ-2T was isolated from the feces of broad-winged
katydid (Pseudorhynchus japonicus) collected in Korea. The
16S rRNA gene sequence of this strain showed the highest
sequence similarity with that of Siphonobacter aquaeclarae
P2T (96.1%) and had low similarities (below 86.3%) with those
of other members of family ‘Flexibacteraceae’. The strain
63MJ-2T is a strictly aerobic, Gram-stain-negative, non-motile,
rod-shaped bacterium. The strain grew at 4–35°C (optimum,
25–30°C), pH of 5.0–9.0 (optimum, 6.0–7.0), and
0–2.0% (optimum, 1.0–2.0) (w/v) NaCl. The DNA G+C content
of strain 63MJ-2T was 43.5 mol%. The major fatty acids
were C16:1 ω5c (42.5%), iso-C17:0 3-OH (18.7%), and summed
feature 3 (iso-C15:0 2-OH and/or C16:1 ω7c, 18.0%). The major
menaquinone was MK-7 and polar lipids were phosphatidylethanolamine,
six unknown aminolipids, and five unknown
lipids. Based on the evidence from our polyphasic
taxonomic study, we conclude that strain 63MJ-2T should be
classified as a novel species of the genus Siphonobacter, and
propose the name Siphonobacter intestinalis sp. nov. The
type strain is 63MJ-2T (=KACC 18663T =NBRC 111883T).
-
Citations
Citations to this article as recorded by - Notification of changes in taxonomic opinion previously published outside the IJSEM: List of Changes in Taxonomic Opinion no. 43
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Validation List no. 227: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Siphonobacter curvatus sp. nov., isolated from a freshwater river
Yunho Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2018; 68(6): 1925. CrossRef
- Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil
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Jae-Hyung Ahn , Byoung-chan Kim , Soo-Jin Kim , Geun-Hey Lee , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2015;53(10):673-677. Published online October 2, 2015
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DOI: https://doi.org/10.1007/s12275-015-5132-2
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914
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6
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Abstract
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Strain GP20-2T was isolated from a soil cultivated with ginseng
in Korea. The 16S rRNA gene sequence of this strain
showed the highest sequence similarity with Sphingomonas
daechungensis CH15-11T (96.7%) and Sphingomonas sediminicola
Dae 20T (96.2%) among the type strains. The strain
GP20-2T was a strictly aerobic, Gram-negative, non-motile,
rod-shaped bacterium that formed very tiny colonies, less than
0.3 mm in diameter after 10 days on R2A agar. The strain
grew at 10–35°C (optimum, 35°C), at a pH of 5.0–8.0 (optimum,
pH 6.0), and in the absence of NaCl. The DNA G+C
content of strain GP20-2T was 67.2 mol%. It contained ubiquinone
Q-10 as the major isoprenoid quinone, and summed
feature 8 (C18:1ω6c and/or C18:1ω7c, 49.8%) and C16:0 (17.0%)
as the major fatty acids. On the basis of evidence from our
polyphasic taxonomic study, we concluded that strain GP20-2T
should be classified as a novel species of the genus Sphingomonas,
for which the name Sphingomonas parvus sp. nov. is
proposed. The type strain is GP20-2T (=KACC 12865T =DSM
100456T).
-
Citations
Citations to this article as recorded by - Validation list no. 228: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Sphingomonas segetis sp. nov., isolated from spinach farming field soil
Jae-Chan Lee, Kyung-Sook Whang
International Journal of Systematic and Evolutionary Microbiology
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Inseong Cha, Heeyoung Kang, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology.2019; 69(10): 3224. CrossRef - An Effect of Salt Concentration and Inoculum Size on Poly(Vinyl Alcohol) Utilization by Two Sphingomonas Strains
Markéta Měrková, Markéta Julinová, Josef Houser, Jan Růžička
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Ji Hee Lee, Dae In Kim, Han Na Choe, Soon Dong Lee, Chi Nam Seong
International Journal of Systematic and Evolutionary Microbiology.2017; 67(8): 2834. CrossRef - Sphingomonas lutea sp. nov., isolated from freshwater of an artificial reservoir
Ji Hee Lee, Dae In Kim, Joo Won Kang, Chi Nam Seong
International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5493. CrossRef
- Chujaibacter soli gen. nov., sp. nov., isolated from soil
-
Soo-Jin Kim , Jae-Hyung Ahn , Hang-Yeon Weon , Seung-Beom Hong , Soon-Ja Seok , Jeong-Seon Kim , Soon-Wo Kwon
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J. Microbiol. 2015;53(9):592-597. Published online August 27, 2015
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DOI: https://doi.org/10.1007/s12275-015-5136-y
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A Gram-staining-negative, aerobic, non-flagellated, rod-shaped
bacterial strain, KIS55-21T, was isolated from a soil sample
from Chuja Island, Jeju Province, Republic of Korea.
Strain KIS55-21T grew optimally at pH 7.0, at 28–30°C and
in the presence of 0% (w/v) NaCl. Neighbor-joining and
maximum-likelihood trees based on the 16S rRNA gene sequences
revealed that strain KIS55-21T fell within the family
Xanthomonadaceae and was closely related to Metallibacterium
scheffleri DKET. Strain KIS55-21T exhibited the highest
16S rRNA gene sequence similarity (92.6%) to that of M.
scheffleri DKET, with similarities of less than 92.0% to those
of the genera Dokdonella, Rhodanobacter, Aquimonas, and
Frateuria. Strain KIS55-21T contained ubiquinone-8 (Q-8)
as the predominant ubiquinone, iso-C17:0, summed feature 9
(iso-C17:1 ω9c and/or C16:0 10-methyl), anteiso-C17:0 and C16:0
as the major fatty acids, and phosphatidylethanolamine, aminophospholipid,
phosphatidylglycerol, diphosphatidylglycerol,
and phosphatidylmonomethylethanolamine as the main
polar lipids. The DNA G+C content of strain KIS55-21T was
65.9 mol%. Differential phenotypic and chemotaxonomic
properties and phylogenetic data of strain KIS55-21T demonstrated
that this strain is distinguishable from closely related
genera within the family Xanthomonadaceae. On the basis
of the data presented, strain KIS55-21T is considered to represent
a novel genus and species, for which the name Chujaibacter
soli gen. nov., sp. nov. is proposed. The type strain is
KIS55-21T (=KACC 16971T =DSM 28578T).
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International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_11): 3763. CrossRef
- Nocardioides paucivorans sp. nov. Isolated from Soil
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Jae-Hyung Ahn , Jun-Muk Lim , Soo-Jin Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2014;52(12):990-994. Published online November 29, 2014
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DOI: https://doi.org/10.1007/s12275-014-4587-x
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1,118
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One strain, designated KIS31-44T, was isolated from a soil sample collected from Dokdo Island, South Korea. The strain is Gram-stain-positive, aerobic, non-spore-forming and nonmotile. It grows optimally at 28–30°C, at pH 7.0 and 0% NaCl. 16S rRNA gene sequence analysis showed that strain KIS31-44T belonged to the genus Nocardioides and shared the highest sequence similarities with Nocardioides aestuarii JC2056T (95.5%) and Nocardioides terrae VA15T (95.0%). The major fatty acids of strain KIS31-44T were C17:1 ω6c, C18:1 ω9c, summed feature 3 (C16:1 ω6c and/or C16:1 ω7c), iso-C16:0, C18:0 10-methyl (TBSA), C16:0 2-OH, C17:0 10-methyl, and iso-C16:1 H. The major isoprenoid quinone was MK-8 (H4). The strain
contained diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol as the major polar lipids. The peptidoglycan structure was A3γ-type with LL-diaminopimelic acid. Based on these data, the isolate represents one novel species
in the genus Nocardioides, for which the name Nocardioides paucivorans sp. nov. (type strain KIS31-44T =DSM 27142T =KACC 17309T) is proposed.
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Citations
Citations to this article as recorded by - Validation List no. 229: valid publication of new names and new combinations effectively published outside the IJSEM
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- Diaminobutyricibacter tongyongensis gen. nov., sp. nov. and Homoserinibacter gongjuensis gen. nov., sp. nov. Belong to the Family Microbacteriaceae
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Soo-Jin Kim , Jae-Hyung Ahn , Hang-Yeon Weon , Moriyuki Hamada , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2014;52(6):527-533. Published online February 17, 2014
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DOI: https://doi.org/10.1007/s12275-014-3278-y
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Two bacterial strains, KIS66-7T and 5GH26-15T, were isolated from soil samples collected in the South Korean cities of Tongyong and Gongju, respectively. Both strains were aerobic, Gram-stain-positive, mesophilic, flagellated, and rodshaped. A phylogenetic analysis revealed that both strains belonged to the family Microbacteriaceae of the phylum Actinobacteria. The 16S rRNA gene sequence of strain KIS66-7T had the highest similarities with those of Labedella gwakjiensis KSW2-17T (97.3%), Cryobacterium psychrophilum DSM 4854T (97.2%), Leifsonia lichenia 2SbT (97.2%), Leifsonia naganoensis JCM 10592T (97.0%), and Cryobacterium mesophilum MSL-15T (97.0%). Strain 5GH26-15T showed the highest sequence similarities with Leifsonia psychrotolerans LI1T (97.4%) and Schumannella luteola KHIAT (97.1%). The 16S rRNA gene sequence from KIS66-7T exhibited 96.4% similarity with that from 5GH26-15T. Strain KIS66-7T contained a B2γ type peptidoglycan structure with D-DAB as the diamino acid; MK-13, MK-12, and MK-14 as the respiratory quinones; ai-C15:0, ai-C17:0, and i-C16:0 as the major cellular fatty acids; and diphosphatidylglycerol, phatidylglycerol, and glycolipids as the predominant polar lipids. Strain 5GH26-15T had a B2β type peptidoglycan structure with D-DAB as the diamino acid; MK-14 and MK-13 as the respiratory quinones; ai-C15:0, i-C16:0, and ai-C17:0 as the major cellular fatty acids; and diphosphatidylglycerol, phatidylglycerol, and glycolipids as the predominant polar lipids. Both strains had low DNA-DNA hybridization values (<40%) with closely related taxa. Based on our polyphasic taxonomic characterization, we propose that strains KIS66-7T and 5GH26-15T represent novel genera and species, for which we propose the names Diaminobutyricibacter tongyongensis gen. nov., sp. nov. (type strain KIS66-7T =KACC 15515T =NBRC 108724T) and Homoserinibacter gongjuensis gen. nov., sp. nov. (type strain 5GH26-15T =KACC 15524T =NBRC 108755T) within the family Microbacteriaceae.
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Wenbo Luo, Yuanmeihui Tao, Juan Zhou, Wenjing Lei, Qun Xiao, Ji Pu, Han Zheng, Jing Yang, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5271. CrossRef - Planctomonas deserti gen. nov., sp. nov., a new member of the family Microbacteriaceae isolated from soil of the Taklamakan desert
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International Journal of Systematic and Evolutionary Microbiology.2019; 69(3): 616. CrossRef -
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International Journal of Systematic and Evolutionary Microbiology
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- Paenibacillus cucumis sp. nov. Isolated from Greenhouse Soil
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Jae-Hyung Ahn , Byoung-chan Kim , Byung-Yong Kim , Soo-Jin Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2014;52(6):460-464. Published online May 29, 2014
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DOI: https://doi.org/10.1007/s12275-014-4071-7
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1,064
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Strain CO 4-7T was isolated from greenhouse soil used for cultivation of cucumbers in Korea. The 16S rRNA gene sequence of strain CO 4-7T showed the highest sequence similarity with Paenibacillus contaminans CKOBP-6T (94.2%) among the type strains. Strain CO 4-7T was a strictly aerobic, Gram-staining-positive, endospore-forming, and motile rodshaped bacterium. Strain CO 4-7T grew at 10–45°C (optimum, 30°C), at pH 6.0–7.5 (optimum, pH 6.5) and in the presence of 0–5% NaCl (optimum, 0.5%). The DNA G+C content of strain CO 4-7T was 48.5 mol%. It contained MK-7 as the major isoprenoid quinone and anteiso-C15:0 (51.8%), C16:0 (12.7%), and iso-C16:0 (8.6%) as the major fatty acids. The cell wall contained meso-diaminopimelic acid. Based on evidence from our polyphasic taxonomic study, it was concluded that strain CO 4-7T should be classified as a novel species of the genus Paenibacillus, for which, the name Paenibacillus cucumis sp. nov. is proposed. The type strain is CO 4-7T (=KACC 17444T=JCM 19515T).
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Journal of Microbiology.2016; 54(11): 709. CrossRef - Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil
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Journal of Microbiology.2015; 53(10): 673. CrossRef - The Prevalence and Control of Bacillus and Related Spore-Forming Bacteria in the Dairy Industry
Nidhi Gopal, Colin Hill, Paul R. Ross, Tom P. Beresford, Mark A. Fenelon, Paul D. Cotter
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Jae-Hyung Ahn, Byoung-chan Kim, Jae-Ho Joa, Soo-Jin Kim, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_11): 3933. CrossRef
- Niabella terrae sp. nov. Isolated from Greenhouse Soil
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Jae-Hyung Ahn , Eun-Hye Jo , Byung-Yong Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2013;51(6):731-735. Published online December 19, 2013
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DOI: https://doi.org/10.1007/s12275-013-3507-9
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An orange-colored bacterial strain, ICM 1-15T, was isolated
from greenhouse soil. The 16S rRNA gene sequence of this
strain showed the highest sequence similarity with Niabella
ginsengisoli GR10-1T (95.2%) and Niabella yanshanensis
CCBAU 05354T (95.0%) among the type strains. The strain
ICM 1-15T was a strictly aerobic, Gram-negative, non-sporeforming,
non-motile, flexirubin pigment-producing, short
rod-shaped bacterium. The strain grew at 15–35°C (optimum,
25°C), at a pH of 5.0–8.5 (optimum, pH 6.5), and in
the presence of 0–3% NaCl (optimum, 1%). The DNA G+C
content of strain ICM 1-15T was 43.6 mol%. It contained
MK-7 as the major isoprenoid quinone and iso-C15:0 (38.9%),
iso-C15:1 G (20.3%), and iso-C17:0 3-OH (12.9%) as the major
fatty acids. On the basis of evidence from our polyphasic
taxonomic study, we concluded that strain ICM 1-15T should
be classified within a novel species of the genus Niabella,
for which the name Niabella terrae sp. nov. is proposed.
The type strain is ICM 1-15T (=KACC 17443T =JCM 19502T).
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Citations
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- Lysinibacillus chungkukjangi sp. nov., Isolated from Chungkukjang, Korean Fermented Soybean Food
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Kyung-Sook Whang , Soon-Wo Kwon
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J. Microbiol. 2013;51(3):400-404. Published online June 28, 2013
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DOI: https://doi.org/10.1007/s12275-013-2664-1
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Abstract
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One bacterial strain 2RL3-2T was isolated from Chungkukjang, a traditional Korean fermented food made from soybeans, and determined to be a Gram-positive, aerobic, sporeforming rod. Growth of the novel strain was optimal at 30°C and pH 7.0. The 16S rRNA gene of strain 2RL3-2T showed the highest level of sequence similarity to Lysinibacillus sinduriensis BLB-1T (99.0%), Lysinibacillus massiliensis 4400831T (97.1%), Lysinibacillus xylanilyticus XDB9T (97.0%), and Lysinibacillus odysseyi 34hs-1T (96.8%). Phylogenetic analysis showed that strain 2RL3-2T formed a robust cluster with L. sinduriensis BLB-1T, L. massiliensis 4400831T, and L. odyssey 34hs-1T. The major fatty acids were anteiso-C15:0 (47.3%), iso-C16:0 (16.3%), and anteiso-C17:0 (11.3%), and the only menaquinone was MK-7. Diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine were the major polar lipids, along with an unknown phospholipid and two unknown lipids. The peptidoglycan type was A4α, with an interpeptide bridge of l-Lys–d-Asp. DNA-DNA hybridization values between strain 2RL3-2T and closely related Lysinibacillus species were below 43±4%. Therefore, based on phenotypic, chemotaxonomic, and phylogenetic characteristics, it was determined that strain 2RL3-2T represents a novel species of the genus Lysinibacillus, for which the name Lysinibacillus chungkukjangi sp. nov. is proposed. The type strain is 2RL3-2T (=KACC 16626T =NBRC 108948T).
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Citations
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(6):1086-1086.
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Abstract
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In the article by Soon-Jin Kim et al. that appears in the Journal of Microbiology 2012; 50, 673-679, the menaquinone composition
of strain 5317J-19T was presented as MK-12 (50%) and MK-11 (31%) as major ones, and MK-13 (11%), MK-10 (7%), and
MK-9 (1%). The correct composition of menaquinones are MK-13 (50%) and MK-12 (31%) as major ones, and MK-14 (11%),
MK-11 (7%), and MK-10 (1%).
- Effects of PCR Cycle Number and DNA Polymerase Type on the 16S rRNA Gene Pyrosequencing Analysis of Bacterial Communities
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Jae-Hyung Ahn , Byung-Yong Kim , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2012;50(6):1071-1074. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2642-z
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643
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Abstract
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The effects of PCR cycle number and DNA polymerase type on 16S rRNA gene pyrosequencing analysis were investigated using an artificially prepared bacterial community (mock community). The bacterial richness was overestimated at increased PCR cycle number mostly due to the occurence of chimeric sequences, and this was more serious with a DNA polymerase having proofreading activity than with Taq DNA polymerase. These results suggest that PCR cycle number must be kept as low as possible for accurate estimation of bacterial richness and that particular care must be taken when a DNA polymerase having proofreading activity is used.
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- Diaminobutyricimonas aerilata gen. nov., sp. nov., a Novel Member of the Family Microbacteriaceae Isolated from an Air Sample in Korea
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Yun-Hee Jang , Soo-Jin Kim , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(6):1047-1052. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2118-1
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Abstract
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A novel isolate, designated 6408J-67T, was isolated from an air sample collected from Jeju Island, Republic of Korea. Its phenotypic, genotypic, and chemotaxonomic properties were compared with those of members of the family Microbacteriaceae.
The Gram-positive, aerobic, motile rod formed light yellow, smooth, circular and convex colonies. Optimal growth occurred at 30°C and pH 7.0. 16S rRNA gene sequence data showed that the isolate was a novel member of the family Microbacteriaceae, with the highest sequence similarity (97.4%) to Labedella gwakjiensis KSW2-17T and less (<97%) sequence similarity with other taxa. The major cellular fatty acids (>10% of the total) were anteiso-C15:0, iso-C14:0, and iso-C16:0. The strain also contained MK-13, MK-12, and MK-14 as the major menaquinones, as well as diphosphatidylglycerol, phosphatidylglycerol, and two unknown glycolipids. Its peptidoglycan structure was B1β with 2,4-diaminobutyric acid as a diamino acid. Mycolic acids were absent. The DNA G+C content was 68.3 mol%. Based on these phenotypic and genotypic findings, strain 6408J-67T represents a novel species of a new genus within the family Microbacteriaceae, for which the name Diaminobutyricimonas aerilata gen. nov., sp. nov. is proposed. The type strain is 6408J-67T (=KACC 15518T =NBRC 108726T).
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- Characterization of the Bacterial and Archaeal Communities in Rice Field Soils Subjected to Long-Term Fertilization Practices
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Jae-Hyung Ahn , Jaekyeong Song , Byung-Yong Kim , Myung-Sook Kim , Jae-Ho Joa , Hang-Yeon Weon
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J. Microbiol. 2012;50(5):754-765. Published online November 4, 2012
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DOI: https://doi.org/10.1007/s12275-012-2409-6
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781
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The bacterial and archaeal communities in rice field soils subjected to different fertilization regimes for 57 years were investigated in two different seasons, a non-planted, drained season (April) and a rice-growing, flooded season (August), by performing soil dehydrogenase assay, real-time PCR assay and pyrosequencing analysis. All fertilization regimes increased the soil dehydrogenase activity while the abundances of bacteria and archaea increased in the plots receiving inorganic fertilizers plus compost and not in those receiving inorganic fertilizers only. Rice-growing and flooding decreased the soil dehydrogenase activity while they increased the bacterial diversity in rice field soils. The bacterial communities were dominated by Chloroflexi, Proteobacteria, and Actinobacteria and the archaeal communities by Crenarchaeota at the phylum level. In principal coordinates analysis based on the weighted Fast UniFrac metric, the bacterial and archaeal communities were separated primarily by season, and generally distributed along with soil pH, the variation of which had been caused by long-term fertilization. Variations in the relative abundance according to the season or soil pH were observed for many bacterial and archaeal groups. In conclusion, the microbial activity, prokaryotic abundance and diversity, and prokaryotic community structure in the rice field soils were changed by season and long-term fertilization.
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- Pyrosequencing Analysis of the Bacterial Communities in the Guts of Honey Bees Apis cerana and Apis mellifera in Korea
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Jae-Hyung Ahn , In-Pyo Hong , Jeung-Im Bok , Byung-Yong Kim , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2012;50(5):735-745. Published online November 4, 2012
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DOI: https://doi.org/10.1007/s12275-012-2188-0
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The bacterial communities in the guts of the adults and larvae of the Asian honey bee Apis cerana and the European honey bee Apis mellifera were surveyed by pyrosequencing the 16S rRNA genes. Most of the gut bacterial 16S rRNA gene sequences were highly similar to the known honey bee-specific ones and affiliated with Pasteurellaceae or lactic acid bacteria (LAB). The numbers of operational taxonomic units (OTUs, defined at 97% similarity) were lower in the larval guts (6 or 9) than in the adult guts (18 or 20), and the frequencies of Pasteurellaceae-related OTUs were higher in the larval guts while those of LAB-related OTUs in the adult guts. The frequencies of Lactococcus, Bartonella, Spiroplasma, Enterobacteriaceae, and Flavobacteriaceae-related OTUs were much higher in A. cerana guts while Bifidobacterium and Lachnospiraceae-related OTUs were more abundant in A. mellfera guts. The bacterial community structures in the midguts and hindguts of the adult honey bees were not different for A. cerana, but significantly different for A. mellifera. The above results substantiated the previous observation that honey bee guts are dominated by several specific bacterial groups, and also showed that the relative abundances of OTUs could be markedly changed depending on the developmental stage, the location within the gut, and the honey bee species. The possibility of using the gut bacterial community as an indicator of honey bee health was discussed.
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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DOI: https://doi.org/10.1007/s12275-012-2096-3
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A bacterial strain isolated from an air sample, strain 5317J-19T, was characterized. The isolate was an aerobic, motile, Gram-positive rod. The organism was able to grow between 4 and 35°C and between pH 6 and 9. The predominant fatty acids were anteiso-C15:0 and iso-C16:0. The major respiratory menaquinones were MK-12 and MK-11, and the minor ones were MK13, MK-10, and MK-9. Genomic DNA G+C content was 66 mol%. The diagnostic diamino acid of the peptidoglycan is presumably D-Orn. The peptidoglycan is supposed to be B2β type. The 16S rRNA gene sequence analysis indicated that this isolate belongs to the family Microbacteriaceae and had the highest sequence similarities with Salinibacterium xinjiangense 0543T (97.6%), Salinibacterium amurskyense KMM 3673T (97.2%), and Leifsonia bigeumensis MSL-27T (97.2%). Phylogenetic analysis and phenotypic characteristics support the proposal of a new genus and a novel species, with the name Homoserinimonas aerilata gen. nov., sp. nov. The type strain of Homoserinimonas aerilata is 5317J-19T (=KACC 15522T =NBRC 108729T).
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Keun Sik Baik , Seong Chan Park , Eun Mi Kim , Kyung Sook Bae , Jae-Hyung Ahn , Jong-Ok Ka , Jongsik Chun , Chi Nam Seong
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DOI: https://doi.org/10.1007/s12275-008-0135-x
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672
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Diversity of bacterial community in water layer of Woopo wetland was investigated. Cultivable bacterial strains were isolated by the standard dilution plating technique and culture-independent 16S rRNA gene clones were obtained directly from DNA extracts of a water sample. Amplified rDNA restriction analysis (ARDRA) was applied onto both of the isolates and 16S rRNA gene clones. Rarefaction curves, coverage rate and diversity indices of ARDRA patterns were calculated. Representative isolates and clones of all the single isolate/clone phylotype were partially sequenced and analyzed phylogenetically. Sixty-four and 125 phylotypes were obtained from 203 bacterial isolates and 235 culture-independent 16S rRNA gene clones, respectively. Bacterial isolates were composed of 4 phyla, of which Firmicutes (49.8%) and Actinobacteria (32.0%) were predominant. Isolates were affiliated with 58 species. Culture-independent 16S rRNA gene clones were composed of 8 phyla, of which Proteobacteria (62.2%), Actinobacteria (15.5%), and Bacteroidetes (13.7%) were predominant. Diversity of 16S rRNA gene clones originated from cultivation-independent DNA extracts was higher than that of isolated bacteria.
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DOI: https://doi.org/2040 [pii]
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Twelve mecoprop-degrading bacteria were isolated from soil samples, and their genetic and phenotypic characteristics were investigated. Analysis of 16S rDNA sequences indicated that the isolates were related to members of the genus Sphingomonas. Ten different chromosomal DNA patterns were obtained by polymerase-chain-reaction (PCR) amplification of repetitive extragenic palindromic (REP) sequences from the 12 isolates. The isolates were found to be able to utilize the chiral herbicide mecoprop as a sole source of carbon and energy. While seven of the isolates were able to degrade both (R)- and (S)-mecoprop, four isolates exhibited enantioselective degradation of the (S)-type and one isolate could degrade only the (R)-enantiomer. All of the isolates were observed to possess plasmid DNAs. When certain plasmids were removed from isolates MP11, MP15, and MP23, those strains could no longer degrade mecoprop. This compelling result suggests that plasmid DNAs, in this case, conferred the ability to degrade the herbicide. The isolates MP13, MP15, and MP24 were identified as the same strain; however, they exhibited different plasmid profiles. This indicates that these isolates acquired different mecoprop-degradative plasmids in different soils through natural gene transfer.
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