- Bacillus piscis sp. nov., a novel bacterium isolated from the muscle of the antarctic fish Dissostichus mawsoni
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Jae-Bong Lee , Seon Hwa Jeon , Seok-Gwan Choi , Hee-Young Jung , Myung Kyum Kim , Sathiyaraj Srinivasan
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J. Microbiol. 2019;57(6):539-539.
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DOI: https://doi.org/10.1007/s12275-019-0719-7
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In the article by Lee et al. published in Journal of Microbiology 2016; 54, 809–813, The KCTC accession number KCTC 18866T
in abstract and foot note should be corrected to KCTC 33839T.
The sentence in abstract should have read: Based on the phylogenetic, phenotypic, and chemotaxonomic data, strain 16MFT21T
(=KCTC 33839T =JCM 31664T).
The species description in foot note should have read: The NCBI GenBank/EMBL/DDBJ accession number for the 16S rRNA
gene sequence of strain 16MFT21T (=KCTC 33839T =JCM 31664T) is KX753358.
We apologize for any inconvenience that this may have caused.
- Larkinella roseus sp. nov., a species of the family Cytophagaceae isolated from beach soil
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Jae-Bong Lee , Sumin Hong , Seung-Yeol Lee , Su-Jin Park , Kyeung Il Park , Seok-Gwan Choi , Myung Kyum Kim , Leonid N. Ten , Hee-Young Jung
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J. Microbiol. 2018;56(1):30-35. Published online January 4, 2018
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DOI: https://doi.org/10.1007/s12275-018-7476-x
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1,007
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The taxonomic position of bacterial strain, designated 15J16-
1T3AT, recovered from a soil sample was established using
a polyphasic approach. Phylogenic analysis based on the
16S rRNA gene sequence showed that strain 15J16-1T3AT
belonged to the family Cytophagaceae, phylum Bacteroidetes,
and was most closely related to ‘Larkinella harenae’ 15J9-9
(95.9% similarity), Larkinella ripae 15J11-11T (95.6%), Larkinella
bovis M2TB15T (94.7%), Larkinella arboricola Z0532T
(93.9%), and Larkinella insperata LMG 22510T (93.5%). Cells
were rod-shaped, Gram-stain-negative, aerobic, and nonmotile.
The isolate grew on NA, R2A, TSA, but not on LB
agar. The strain was able to grow at temperature range from
10°C to 30°C with an optimum at 25°C and pH 6–8. Menaquinone
MK-7 was the predominant respiratory quinone.
The major cellular fatty acids comprised C16:1 ω5c (48.6%)
and C15:0 iso (24.1%). Phosphatidylethanolamine, phosphatidylserine,
and an unidentified lipid were the major polar
lipids. The G + C content of the genomic DNA was 49.5
mol%. Strain 15J16-1T3AT could be distinguished from its
closest phylogenetic neighbors based on its phenotypic, genotypic,
and chemotaxonomic features. Therefore, the isolate
is considered to represent a novel species in the genus
Larkinella, for which the name Larkinella roseus sp. nov. is
proposed. The type strain is 15J16-1T3AT (= KCTC 52004T
= JCM 31991T).
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Citations
Citations to this article as recorded by  - Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
Yuna Park, Leonid N. Ten, Young Koung Lee, Hee‑Young Jung, Myung Kyum Kim
Archives of Microbiology.2022;[Epub] CrossRef - Larkinella punicea sp. nov., isolated from manganese mine soil
Zijie Zhou, Lin Zhu, Yixuan Dong, Xian Xia, Shijuan Wu, Gejiao Wang
Archives of Microbiology.2020; 202(9): 2517. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1411. CrossRef - Hymenobacter segetis sp. nov., isolated from soil
Leonid N. Ten, Soo Jeong Lim, Byung-Oh Kim, In-Kyu Kang, Hee-Young Jung
Archives of Microbiology.2018; 200(8): 1167. CrossRef
- Bacillus piscis sp. nov., a novel bacterium isolated from the muscle of the antarctic fish Dissostichus mawsoni
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Jae-Bong Lee , Seon Hwa Jeon , Seok-Gwan Choi , Hee-Young Jung , Myung Kyum Kim , Sathiyaraj Srinivasan
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J. Microbiol. 2016;54(12):809-813. Published online November 26, 2016
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DOI: https://doi.org/10.1007/s12275-016-6473-1
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1,342
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In this paper, a new bacterial strain designated as 16MFT21T
is isolated from the muscle of a fish caught in the Antarctic
Ocean. Strain 16MFT21T is a Gram-staining-positive, catalase-
oxidase-positive, rod-shaped facultative-aerobic bacterium.
The phylogenetic analysis that is based on the 16S-rRNA
gene sequence of strain 16MFT21T revealed that it belongs to
the genus Bacillus in the family Bacillaceae in the class Bacilli.
The highest degrees of the sequence similarity of the strain
16MFT21T is with Bacillus licheniformis ATCC 14580T (96.6%)
and Bacillus sonorensis NBRC 101234T (96.6%). The isolate
formed a pale-yellow pigment, and it grew in the presence of
0% to 10% (w/v) NaCl (optimum at 2% NaCl), a pH of 6.0 to
10.0 (optimum pHfrom 7.0 to 8.0), and from 4°C to 30°C
(optimum at 30°C). The major polar lipids consist of diphosphatidylglycerol
(DPG) and phosphatidylglycerol (PG). The
predominant fatty acids are iso-C15:0, anteiso-C15:0, iso-C17:0,
and anteiso-C17:0. The main respiratory quinone is menaquinone-
7 (MK-7), and based on the use of the meso-diaminopimelic
acid as the diagnostic diamino acid, the peptidoglycan
cell-wall type is A1γ. Based on the phylogenetic,
phenotypic, and chemotaxonomic data, strain 16MFT21T
(=KCTC 18866T =JCM 31664T) for which the name Bacillus
piscis sp. nov. is proposed should be classified as a new species.
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Citations
Citations to this article as recorded by - Culture-dependent and -independent analyses of bacterial compositions and its contributions to formation of γ-aminobutyric acid and poly-γ-glutamic acid in Cheonggukjang
Young Hun Jin, Jae-Hyung Mah
Food Research International.2024; 179: 114026. CrossRef - Metagenomic and culturomic analyses of bacterial species contributing to tyramine formation in Cheonggukjang
Jong Hyoung Hong, Young Hun Jin, Alixander Mattay Pawluk, Jae-Hyung Mah
LWT.2024; 201: 116265. CrossRef - Statistical optimization of waste molasses-based exopolysaccharides and self-sustainable bioelectricity production for dual chamber microbial fuel cell by Bacillus piscis
Ebtehag A. E. Sakr, Dena Z. Khater, Zeinab M. H. Kheiralla, Kamel M. El‑khatib
Microbial Cell Factories.2023;[Epub] CrossRef - Isolation, characterization, and interaction of lignin‐degrading bacteria from rumen of buffalo (Bubalus bubalis)
Zhen Wang, Wenqing Wu, Luncheng Cui, Xiang Li, Muhammad Fakhar‐e‐Alam Kulyar, Haiqian Xiong, Nian Zhou, Huaihui Yin, Jiakui Li, Xiang Li
Journal of Basic Microbiology.2021; 61(8): 757. CrossRef
- Deinococcus rubellus sp. nov., bacteria isolated from the muscle of antarctic fish
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Seok-Gwan Choi , Seon Hwa Jeon , Jae-Bong Lee , Eun Sun Joo , Sangyong Lim , Hee-Young Jung , Myung Kyum Kim
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J. Microbiol. 2016;54(12):796-801. Published online November 26, 2016
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DOI: https://doi.org/10.1007/s12275-016-6390-3
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967
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Abstract
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Two new bacterial strains designated as Ant6T and Ant18 were
isolated from the muscle of a fish which had been caught in
the Antarctic Ocean. Both strains are Gram-stain-positive,
catalase positive, oxidase negative, aerobic, and coccoid bacteria.
Phylogenetic analysis based on the 16S rRNA gene sequences
of strains Ant6T and Ant18 revealed that the strains
Ant6T and Ant18 belong to the genus Deinococcus in the family
Deinococcaceae in the class Deinococci. The highest degrees of
sequence similarities of strains Ant6T and Ant18 were found
with Deinococcus alpinitundrae LMG 24283T by 96.4% and
96.8%, respectively. Strain Ant6T exhibited a high level of
DNA- DNA hybridization values with strain Ant18 (82 ± 0.6%).
Chemotaxonomic data revealed that the predominant fatty
acids were C17:0 cyclo, 16:0, and feature 3 (C16:1 ω6c/ω7c) for
both strains. A complex polar lipid profile consisted of major
amounts of unknown phosphoglycolipids (PGL) and unknown
aminophospholipid (APL). Based on the phylogenetic,
phenotypic, and chemotaxonomic data, strains Ant6T
(=KEMB 9004-169T =JCM 31434T) and Ant18 (=KEMB 9004-
170) should be classified as a new species, for which the name
Deinococcus rubellus sp. nov. is proposed.
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Citations
Citations to this article as recorded by - Complete genome sequence of Deinococcus rubellus Ant6 isolated from the fish muscle in the Antarctic Ocean
Surajit De Mandal, Sathiyaraj Srinivasan, Junhyun Jeon
Frontiers in Bioengineering and Biotechnology.2023;[Epub] CrossRef
- Sunxiuqinia dokdonensis sp. nov., Isolated from Deep Sub-Seafloor Sediment
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Dong-Ho Chang , Jae-Bong Lee , Geun-Hye Lee , Moon-Soo Rhee , Haewon Lee , Kyung Sook Bae , Doo-Sang Park , Byoung-Chan Kim
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J. Microbiol. 2013;51(6):741-746. Published online December 19, 2013
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DOI: https://doi.org/10.1007/s12275-013-3492-z
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1,314
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11
Crossref
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Abstract
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A novel facultatively anaerobic strain DH1T was isolated
from deep sub-seafloor sediment at a depth of 900 m below
the seafloor off Seo-do (the west part of Dokdo Island) in
the East Sea of the Republic of Korea. The new strain was
characterized using polyphasic approaches. The isolate was
Gram-stain-negative, motile by gliding, non-spore-forming
rods, oxidase-negative, and catalase-positive; and formed
colonies of orange-red color. The NaCl range for growth
was 0.5–7.0% (w/v) and no growth was observed in the absence
of NaCl. The isolate grew optimally at 30°C, with 2%
(w/v) NaCl and at pH 7. The cell-wall hydrolysates contained
ribose as a major sugar. The DNA G+C content was 40.8
mol%. The closest related strains are Sunxiuqinia faeciviva
JAM-BA0302T and Sunxiuqinia elliptica DQHS-4T (97.9 and
96.3% sequence similarity, respectively). The level of DNADNA
relatedness between strain DH1T and S. faeciviva JAMBA0302T
was around 41% (but only 6% between DH1T and
S. elliptica DQHS-4T). The major cellular fatty acids of the
isolate were contained iso-C15:0 (25.9%), anteiso-C15:0 (16.7%),
and summed feature 9 (comprising C16:0 3-OH and/or unknown
fatty acid of dimethylacetal ECL 17.157; 13.2%).
The predominant menaquinone was MK-7. On the basis of
polyphasic evidence from this study, the isolate was considered
to represent a novel species of the genus Sunxiuqinia,
for which the name Sunxiuqinia dokdonensis sp. nov. is
proposed; the type strain is DH1T (=KCTC 32503T =CGMCC
1.12676T =JCM 19380T).
-
Citations
Citations to this article as recorded by - Validation List no. 229: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Gaoshiqia hydrogeniformans sp. nov., a novel hydrogen-producing bacterium isolated from a deep diatomaceous shale formation
Akio Ueno, Kiyoshi Sato, Shuji Tamamura, Takuma Murakami, Hidenori Inomata, Satoshi Tamazawa, Yuki Amano, Kazuya Miyakawa, Takeshi Naganuma, Toshifumi Igarashi
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Deltaproteobacterium Strain KaireiS1, a Mesophilic, Hydrogen-Oxidizing and Sulfate-Reducing Bacterium From an Inactive Deep-Sea Hydrothermal Chimney
Nicole Adam, Yuchen Han, Katja Laufer-Meiser, Rebecca Bährle, Ulrich Schwarz-Schampera, Axel Schippers, Mirjam Perner
Frontiers in Microbiology.2021;[Epub] CrossRef -
Sunxiuqinia indica sp. nov., isolated from deep sea
Jianyang Li, Mingming Qi, Qiliang Lai, Guangyi Wang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4186. CrossRef - Description of Maribellus sediminis sp. nov., a marine nitrogen-fixing bacterium isolated from sediment of cordgrass and mangrove
Zhaobin Huang, Yuzhong Hu, Qiliang Lai, Yu Guo
Systematic and Applied Microbiology.2020; 43(4): 126099. CrossRef - Simulated reactive zone with emulsified vegetable oil for the long-term remediation of Cr(VI)-contaminated aquifer: dynamic evolution of geological parameters and groundwater microbial community
Jun Dong, Jinqiu Yu, Qiburi Bao
Environmental Science and Pollution Research.2018; 25(34): 34392. CrossRef - Whole-genome sequence of Sunxiuqinia dokdonensis DH1 T , isolated from deep sub-seafloor sediment in Dokdo Island
Sooyeon Lim, Dong-Ho Chang, Byoung-Chan Kim
Genomics Data.2016; 9: 95. CrossRef - The composition, localization and function of low-temperature-adapted microbial communities involved in methanogenic degradations of cellulose and chitin from Qinghai-Tibetan Plateau wetland soils
Y. Dai, Z. Yan, L. Jia, S. Zhang, L. Gao, X. Wei, Z. Mei, X. Liu
Journal of Applied Microbiology.2016; 121(1): 163. CrossRef -
Roseimarinus sediminis gen. nov., sp. nov., a facultatively anaerobic bacterium isolated from coastal sediment
Wen-Jie Wu, Qian-Qian Liu, Guan-Jun Chen, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_7): 2260. CrossRef - Erysipelothrix larvae sp. nov., isolated from the larval gut of the rhinoceros beetle, Trypoxylus dichotomus (Coleoptera: Scarabaeidae)
Byung-Ho Bang, Moon-Soo Rhee, Dong-Ho Chang, Doo-Sang Park, Byoung-Chan Kim
Antonie van Leeuwenhoek.2015; 107(2): 443. CrossRef - Bacterial colonization of a fumigated alkaline saline soil
Juan M. Bello-López, Cristina A. Domínguez-Mendoza, Arit S. de León-Lorenzana, Laura Delgado-Balbuena, Yendi E. Navarro-Noya, Selene Gómez-Acata, Analine Rodríguez-Valentín, Victor M. Ruíz-Valdiviezo, Marco Luna-Guido, Nele Verhulst, Bram Govaerts, Luc De
Extremophiles.2014; 18(4): 733. CrossRef
- Aestuariibaculum scopimerae sp. nov., Isolated from the Globular Ghost Crab, Scopimera globosa
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Jae-Bong Lee , Byung-Chun Kim , Hyangmi Kim , Kyung Sook Bae , Jae-Hyeong Yang , Young-Yull Chun , Seong-Joon Park , Doo-Sang Park
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J. Microbiol. 2013;51(6):736-740. Published online December 19, 2013
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DOI: https://doi.org/10.1007/s12275-013-3499-5
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979
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A Gram-staining-negative, non-motile, catalase- and oxidasepositive
bacterium, designated strain I-15T, was isolated
from a crab of the Yellow Sea, Korea. On the basis of a 16S
rRNA gene sequence analysis, strain I-15T was shown to
belong to Bacteroidetes, related to the genus Aestuariibaculum.
Sequence similarity between strain I-15T and the only type
strain of the genus Aestuariibaculum, Aestuariibaculum suncheonense
SC17T, was 96.7%. Strain I-15T grew at 0.5–6.0%
(w/v) NaCl, at 10–42°C and at pH 4.5–8.0. It could hydrolyze
starch and Tweens 80. Menaquinone-6 was the only respiratory
quinone, and summed features 3 (C16:1 ω7c/C16:1 ω6c)
(16.4%), iso-C15:0 (15.6%), and iso-C15:1 G (12.6%) were the
major cellular fatty acids. The major polar lipids were phosphatidylethanolamine,
two unidentified aminolipids and two
unidentified lipids. The DNA G+C content was 39.0 mol%.
Polyphasic data allowed genotypic and phenotypic distinction
of strain I-15T from the only validly published Aestuariibaculum
species. Therefore, the organism is considered a
novel species of the genus Aestuariibaculum, for which the
name Aestuariibaculum scopimerae sp. nov. is proposed.
The type strain is I-15T (=KCTC 32459T =JCM 19486T).
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Citations
Citations to this article as recorded by - Aestuariibaculum lutulentum sp. nov., a marine bacterium isolated from coastal sediment in Beihai
Jia-Wei Gao, Dong-Yan He, Wen-Wu Zhang, Yu-Ruo Wang, Yue Su, Jun-Jie Ying, Zhi-Cheng Wu, Wu Qu, Lin Xu, Cong Sun
Archives of Microbiology.2023;[Epub] CrossRef - Complete genome sequence of carotenoid-producing Aestuariibaculum lutulentum L182T isolated from the tidal sediment
Wen-Jia Liu, Jia-Wei Gao, Yu Zhang, Cong Sun, Lin Xu
Marine Genomics.2023; 72: 101074. CrossRef - Aestuariibaculum sediminum sp. nov., a marine bacterium isolated from a tidal flat in Zhoushan
Zhi-Cheng Wu, Xin-Yin Zhang, Cong Sun, Lin Xu, Ge-Yi Fu, Xue-Wei Xu
Archives of Microbiology.2021; 203(6): 2953. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
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