- Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
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Young Joon Oh , Joon Yong Kim , Hyo Kyeong Park , Ja-Young Jang , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
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J. Microbiol. 2019;57(11):997-1002. Published online October 28, 2019
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DOI: https://doi.org/10.1007/s12275-019-9421-z
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A Gram-stain-positive, rod-shaped, alkalitolerant, and halophilic
bacterium–designated as strain NKC3-5T–was isolated
from kimchi that was collected from the Geumsan area
in the Republic of Korea. Cells of isolated strain NKC3-5T
were 0.5–0.7μm wide and 1.4–2.8 μm long. The strain
NKC3-5T could grow at up to 20.0% (w/v) NaCl (optimum
10%), pH 6.5–10.0 (optimum pH 9.0), and 25–40°C (optimum
35°C). The cells were able to reduce nitrate under aerobic
conditions, which is the first report in the genus Salicibibacter.
The genome size and genomic G + C content of
strain NKC3-5T were 3,754,174 bp and 45.9 mol%, respectively;
it contained 3,630 coding sequences, 16S rRNA genes
(six 16S, five 5S, and five 23S), and 59 tRNA genes. Phylogenetic
analysis based on 16S rRNA showed that strain NKC-
3-5T clustered with bacterium Salicibibacter kimchii NKC1-1T,
with a similarity of 96.2–97.6%, but formed a distinct branch
with other published species of the family Bacillaceae. In addition,
OrthoANI value between strain NKC3-5T and Salicibibacter
kimchii NKC1-1T was far lower than the species demarcation
threshold. Using functional genome annotation,
the result found that carbohydrate, amino acid, and vitamin
metabolism related genes were highly distributed in the genome
of strain NKC3-5T. Comparative genomic analysis revealed
that strain NKC3-5T had 716 pan-genome orthologous
groups (POGs), dominated with carbohydrate metabolism.
Phylogenomic analysis based on the concatenated core
POGs revealed that strain NKC3-5T was closely related to
Salicibibacter kimchii. The predominant polar lipids were
phosphatidylglycerol and two unidentified lipids. Anteiso-
C15:0, iso-C17:0, anteiso-C17:0, and iso-C15:0 were the major cellular
fatty acids, and menaquinone-7 was the major isoprenoid
quinone present in strain NKC3-5T. Cell wall peptidoglycan
analysis of strain NKC3-5T showed that meso-diaminopimelic
acid was the diagnostic diamino acid. The phenotypic,
genomic, phylogenetic, and chemotaxonomic properties
reveal that the strain represents a novel species of
the genus Salicibibacter, for which the name Salicibibacter
halophilus sp. nov. is proposed, with the type strain NKC3-5T
(= KACC 21230T = JCM 33437T).
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Citations
Citations to this article as recorded by  - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - The Methods of Digging for “Gold” within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools
Jakub Lach, Paulina Jęcz, Dominik Strapagiel, Agnieszka Matera-Witkiewicz, Paweł Stączek
Genes.2021; 12(11): 1756. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
- Rotavirus-mediated alteration of gut microbiota and its correlation with physiological characteristics in neonatal calves
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Ja-Young Jang , Suhee Kim , Min-Sung Kwon , Jieun Lee , Do-Hyeon Yu , Ru-Hui Song , Hak-Jong Choi , Jinho Park
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J. Microbiol. 2019;57(2):113-121. Published online November 19, 2018
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DOI: https://doi.org/10.1007/s12275-019-8549-1
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Diarrhea is a fatal disease to neonatal calves, and rotavirus is
the main pathogen associated with neonatal calf diarrhea.
Although previous studies have reported that the gut microbiota
is changed in calves during diarrhea, less is known
about whether rotavirus infection alters the structure of the
gut microbiota. Here, we characterized fecal microbial communities
and identified possible relationships between the
gut microbiota profiles and physiological parameters. Five
fecal specimens of rotavirus-infected calves from 1 to 30 days
after birth and five fecal specimens of age-matched healthy
calves were used for the microbial community analysis using
the Illumina MiSeq sequencer. Rotavirus infection was
associated with reduced rotavirus infection significantly reduced
the richness and diversity of the bacterial community.
Weighted unique fraction metric analysis exhibited significant
differences in community membership and structure between
healthy and rotavirus-infected calves. Based on relative abundance
analysis and linear discriminant analysis effect size, we
found that the representative genera from Lactobacillus, Subdoligranulum,
Blautia, and Bacteroides were closely related to
healthy calves, while the genera Escherichia and Clostridium
were closely affiliated to rotavirus-infected calves. Furthermore,
canonical correlation analysis and Pearson correlation
coefficient results revealed that the increased relative abundances
of Lactobacillus, Subdoligranulum, and Bacteroides
were correlated with normal levels of physiological characteristics
such as white blood cells, blood urea nitrogen, serum
amyloid protein A, and glucose concentration in serum. These
results
suggest that rotavirus infection alters the structure
of the gut microbiota, correlating changes in physiological
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Citations
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Shuyao Zhu, Shuhao Bian, Liangliang Li, Mudassar Iqbal, Faisal Ayub Kiani, Abdul Asim Farooq, Haiju Dong, Xiangqian Zhang, Hongyu Dai, Fang Liu, Aoyun Li
Journal of Integrative Agriculture.2026; 25(9): 3511. CrossRef - Integrated 16S rRNA Sequencing and Metabolomic Analyses Reveal Gut Microbiota Dysbiosis and Metabolic Perturbations in Neonatal Dairy Calves with Bovine Rotavirus-Induced Diarrhea
Youli Yu, Yuxi Zhao, Wei He, Zhengqing Yu, Yuqiu Yang, Jiandong Wang
Biology.2026; 15(11): 855. CrossRef - Differences in gut microbiome of Hanwoo (Korean indigenous cattle)
calves as driven by bovine rotavirus and bovine coronavirus
infection
Ji-Yeong Ku, Mi-Jin Lee, Youngwoo Jung, Kwang-Man Park, Jonghun Baek, Youngjun Kim, Ji-Seon Yoon, Kyoung-Seong Choi, Hak-Jong Choi, Jinho Park
Journal of Animal Science and Technology.2026; 68(3): 904. CrossRef - Comparative metagenomic and untargeted metabolomic analyses reveal gut microbiota and metabolite alterations associated with diarrhea in neonatal Holstein calves in Anhui, China
Xing Zhang, Hui Liu, Chaoyue He, Huiyang Chen, Huilin Zhang, Falei Li
Veterinary World.2026; : 2763. CrossRef - The Gut Microbiome in Enteric Viral Infections: Underlying Mechanisms and Therapeutic Approaches
Alejandro Borrego-Ruiz, Juan J. Borrego
Microorganisms.2025; 13(10): 2247. CrossRef - Effects of Yeast β-Glucan Supplementation on Calf Intestinal and Respiratory Health
Jiamin Wang, Fang Yan, Meng Xiong, Jieru Dong, Wenqian Yang, Xiurong Xu
Animals.2025; 15(7): 997. CrossRef - Changes in the gut microbiome due to diarrhea in neonatal Korean indigenous calves
Ji-Yeong Ku, Mi-Jin Lee, Youngwoo Jung, Hak-Jong Choi, Jinho Park
Frontiers in Microbiology.2025;[Epub] CrossRef - Potential relationship between gut microbiota and animal diarrhea: a systematic review
Yuxin Zhang, Yonggui Ma, Youchao Qi
Frontiers in Microbiology.2025;[Epub] CrossRef - The differential gut microbiota and their MetaCyc pathways in IBRV infected Angus calves
Pengfei Yi, Tianqing Li, Lianping Xu, Xin Li, Haiyan Wang, Yingcai Ma, Yunxiao Ma, Yawei Sun, Na Li, Qi Zhong, Xuelian Ma, Gang Yao
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Junyan Li, Xin Zhang, Xiaochao Zhao, Gaowa Gong, Jian Li, Baolige Dalai, Ziran Mo, Xiaojing Xu, Xiaoqing Jia, Yaning Li, Juan Lai, Penglong Wang, Lei Sun, Yongfeng Liu, Xiaoping Luo
Microbiome.2025;[Epub] CrossRef - Detection of drug resistance in Escherichia coli from calves with diarrhea in the Tongliao region: an analysis of multidrug-resistant strains
Zi Wang, Miao Sun, Shuang Guo, Yongqiang Wang, Linghao Meng, Jinchuan Shi, Chao Geng, Dongxu Han, Xiaomeng Fu, Jiangdong Xue, Hongxia Ma, Kai Liu
Frontiers in Veterinary Science.2024;[Epub] CrossRef - Neonatal Calf Diarrhea and Gastrointestinal Microbiota: Etiologic Agents and Microbiota Manipulation for Treatment and Prevention of Diarrhea
Emma Jessop, Lynna Li, David L. Renaud, Adronie Verbrugghe, Jennifer Macnicol, Lisa Gamsjäger, Diego E. Gomez
Veterinary Sciences.2024; 11(3): 108. CrossRef - Dynamic Analysis of Stool Microbiota of Simmental Calves and Effects of Diarrhea on Their Gut Microbiota
Qianxun Wang, Mula Na, Shiyu Jia, Miao Sun, Song Gao, Shiwei Pan, Wu Dong, Yang Song, Jingfeng Yang
Biology.2024; 13(7): 520. CrossRef - Impact of Limosilactobacillus fermentum probiotic treatment on gut microbiota composition in sahiwal calves with rotavirus diarrhea: A 16S metagenomic analysis study”
Nadeem Murtaza, Muhammad Nawaz, Tahir Yaqub, Asim Khalid Mehmood
BMC Microbiology.2024;[Epub] CrossRef - Fecal microbiota of diarrheic calves: Before, during, and after recovering from disease
Emma Jessop, David L. Renaud, Adronie Verbrugghe, Dasiel Obregon, Jenniffer Macnicol, Aoife McMahon, Lynna Li, Lisa Gamsjäger, Diego E. Gomez
Journal of Veterinary Internal Medicine.2024; 38(6): 3358. CrossRef - Alterations of microbiota and metabolites in the feces of calves with diarrhea associated with rotavirus and coronavirus infections
Shengwei Cui, Shihui Guo, Qingmei Zhao, Yong Li, Yun Ma, Yongtao Yu
Frontiers in Microbiology.2023;[Epub] CrossRef - Neonatal Calf Diarrhea Is Associated with Decreased Bacterial Diversity and Altered Gut Microbiome Profiles
Wei Li, Xin Yi, Baoyun Wu, Xiang Li, Boping Ye, Ziqi Deng, Runa A, Sanlong Hu, Dongdong Li, Hao Wu, Zhenming Zhou
Fermentation.2023; 9(9): 827. CrossRef - Colonization and development of the gut microbiome in calves
Yufeng Du, Ya Gao, Mingyang Hu, Jinxiu Hou, Linhai Yang, Xianghuang Wang, Wenjuan Du, Jianxin Liu, Qingbiao Xu
Journal of Animal Science and Biotechnology.2023;[Epub] CrossRef -
Intestinal mucin-type
O
-glycans: the major players in the host-bacteria-rotavirus interactions
S.A. Raev, J.O. Amimo, L.J. Saif, A.N. Vlasova
Gut Microbes.2023;[Epub] CrossRef - Modulating gastrointestinal microbiota to alleviate diarrhea in calves
Wenjuan Du, Xianghuang Wang, Mingyang Hu, Jinxiu Hou, Yufeng Du, Wenjin Si, Linhai Yang, Le Xu, Qingbiao Xu
Frontiers in Microbiology.2023;[Epub] CrossRef - Pharmacotherapeutic justification of the hypertonic saline solution usage for the treatment of calves with diarrhea
V. Shaganenko, N. Kozii, R. Shaganenko, N. Avramenko, I. Rublenko, A. Yemelyanenko, O. Poroshynska
Naukovij vìsnik veterinarnoï medicini.2023; (2 (184)): 192. CrossRef - Analysis of Fecal Microbial Changes in Young Calves Following Bovine Rotavirus Infection
Seon-Ho Kim, Youyoung Choi, Michelle A. Miguel, Shin-Ja Lee, Sung-Sill Lee, Sang-Suk Lee
Veterinary Sciences.2023; 10(8): 496. CrossRef - Host innate immune responses and microbiome profile of neonatal calves challenged with Cryptosporidium parvum and the effect of bovine colostrum supplementation
Lisa Gamsjäger, Karina M. Cirone, Steffany Schluessel, Mackenzie Campsall, Aydin Herik, Priyoshi Lahiri, Daniel Young, Antoine Dufour, Panagiotis Sapountzis, Saria Otani, Diego E. Gomez, M. Claire Windeyer, Eduardo R. Cobo
Frontiers in Cellular and Infection Microbiology.2023;[Epub] CrossRef - Microbiota do not restrict rotavirus infection of colon
Arash Hellysaz, Johan Nordgren, Magdalena Neijd, Magalí Martí, Lennart Svensson, Marie Hagbom, Stacey Schultz-Cherry
Journal of Virology.2023;[Epub] CrossRef - Therapeutic Approach Targeting Gut Microbiome in Gastrointestinal Infectious Diseases
Ziying Han, Yiyang Min, Ke Pang, Dong Wu
International Journal of Molecular Sciences.2023; 24(21): 15654. CrossRef - Integrated 16S rDNA Gene Sequencing and Untargeted Metabolomics Analyses to Investigate the Gut Microbial Composition and Plasma Metabolic Phenotype in Calves With Dampness-Heat Diarrhea
Zunxiang Yan, Kang Zhang, Kai Zhang, Guibo Wang, Lei Wang, Jingyan Zhang, Zhengying Qiu, Zhiting Guo, Xiaoping Song, Jianxi Li
Frontiers in Veterinary Science.2022;[Epub] CrossRef - IHNV Infection Induces Strong Mucosal Immunity and Changes of Microbiota in Trout Intestine
Zhenyu Huang, Mengting Zhan, Gaofeng Cheng, Ruiqi Lin, Xue Zhai, Haiou Zheng, Qingchao Wang, Yongyao Yu, Zhen Xu
Viruses.2022; 14(8): 1838. CrossRef - Effects of Anemoside B4 on Diarrhea Incidence, Serum Indices, and Fecal Microbial of Suckling Calves
Meng Lu, Fengming Hu, Yanliang Bi, Tao Ma, Qiyu Diao, Linshu Jiang, Yan Tu
Frontiers in Veterinary Science.2022;[Epub] CrossRef - Gut microbiome alterations in ICU patients with enteral nutrition-related diarrhea
Weiwei Ni, Xinwei Jiao, Huihuang Zou, Mengjuan Jing, Ming Xia, Shichao Zhu, Liming Li
Frontiers in Microbiology.2022;[Epub] CrossRef - Fecal microbiota dynamics and its relationship to diarrhea and health in dairy calves
Hongwei Chen, Yalu Liu, Kailang Huang, Bin Yang, Yuanyuan Zhang, Zhongtang Yu, Jiakun Wang
Journal of Animal Science and Biotechnology.2022;[Epub] CrossRef - Efficacy of Microencapsulated Probiotic as Adjunct Therapy on Resolution of Diarrhea, Copper-Zinc Homeostasis, Immunoglobulins, and Inflammatory Markers in Serum of Spontaneous Rotavirus-Infected Diarrhoetic Calves
Jitendra Singh Gandhar, Ujjwal Kumar De, Anju Kala, Yashpal Singh Malik, Supriya Yadav, Babul Rudra Paul, Shivendra Kumar Dixit, Shubhankar Sircar, Pallab Chaudhary, Manas Kumar Patra, Gyanendra Kumar Gaur
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Chanel A. Mosby, Sutonuka Bhar, Matthew B. Phillips, Mariola J. Edelmann, Melissa K. Jones
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recovery from bovine coronavirus-mediated diarrhea
Min-Sung Kwon, Hee Eun Jo, Jieun Lee, Kyoung-Seong Choi, Dohyeon Yu, Yeon-su Oh, Jinho Park, Hak-Jong Choi
Journal of Animal Science and Technology.2021; 63(1): 125. CrossRef - Single-cell sequencing of rotavirus-infected intestinal epithelium reveals cell-type specific epithelial repair and tuft cell infection
Carolyn Bomidi, Matthew Robertson, Cristian Coarfa, Mary K. Estes, Sarah E. Blutt
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Journal of Dairy Science.2021; 104(6): 7225. CrossRef - Detection of Infectious Agents Causing Neonatal Calf Diarrhea on Two Large Dairy Farms in Yangxin County, Shandong Province, China
Xiaojuan Wei, Weiwei Wang, Zhen Dong, Fusheng Cheng, Xuzheng Zhou, Bing Li, Jiyu Zhang
Frontiers in Veterinary Science.2021;[Epub] CrossRef - Intestinal Microbiota—A Promising Target for Antiviral Therapy?
Mengling Yang, Yang Yang, Qingnan He, Ping Zhu, Mengqi Liu, Jiahao Xu, Mingyi Zhao
Frontiers in Immunology.2021;[Epub] CrossRef - The Interaction Between Viruses and Intestinal Microbiota: A Review
Zhiming Lv, Dongwei Xiong, Jichao Shi, Miao Long, Zeliang Chen
Current Microbiology.2021; 78(10): 3597. CrossRef - Effect of Heat-Inactivated Compound Probiotics on Growth Performance, Plasma Biochemical Indices, and Cecal Microbiome in Yellow-Feathered Broilers
Cui Zhu, Li Gong, Kaiyong Huang, Fangjun Li, Diqing Tong, Huihua Zhang
Frontiers in Microbiology.2020;[Epub] CrossRef - The Commensal Microbiota and Viral Infection: A Comprehensive Review
Na Li, Wen-Tao Ma, Ming Pang, Qin-Lei Fan, Jin-Lian Hua
Frontiers in Immunology.2019;[Epub] CrossRef
- Salicibibacter kimchii gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium in the family Bacillaceae, isolated from kimchi
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Ja-Young Jang , Young Joon Oh , Seul Ki Lim , Hyo Kyeong Park , Changsu Lee , Joon Yong Kim , Mi-Ai Lee , Hak-Jong Choi
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J. Microbiol. 2018;56(12):880-885. Published online October 25, 2018
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DOI: https://doi.org/10.1007/s12275-018-8518-0
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A moderately halophilic and alkalitolerant bacterial strain
NKC1-1T was isolated from commercial kimchi in Korea.
Strain NKC1-1T was Gram-stain-positive, aerobic, rod-shaped,
non-motile, and contained diaminopimelic acid-type murein.
Cell growth was observed in a medium containing 0–25%
(w/v) NaCl (optimal at 10% [w/v]), at 20–40°C (optimal at
37°C) and pH 6.5–10.0 (optimal at pH 9.0). The major isoprenoid
quinone of the isolate was menaquinone-7, and the
major polar lipids were phosphatidylglycerol and unidentified
phospholipids. Cell membrane of the strain contained
iso-C17:0 and anteiso-C15:0 as the major fatty acids. Its DNA
G + C content was 45.2 mol%. Phylogenetic analysis indicated
the strain to be most closely related to Geomicrobium halophilum
with 92.7–92.9% 16S rRNA gene sequence similarity.
Based on polyphasic taxonomic evaluation with phenotypic,
phylogenetic, and chemotaxonomic analyses, the strain represents
a novel species in a new genus, for which the name
Salicibibacter kimchii gen. nov., sp. nov. is proposed (= CECT
9537T; KCCM 43276T).
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Citations
Citations to this article as recorded by - A taxonomic note on the order Caryophanales: description of 12 novel families and emended description of 21 families
Yangjie Li, Dechao Zhang, Dexin Bo, Donghai Peng, Ming Sun, Jinshui Zheng
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Bacillales: From Taxonomy to Biotechnological and Industrial Perspectives
Sharareh Harirchi, Taner Sar, Mohaddaseh Ramezani, Habibu Aliyu, Zahra Etemadifar, Seyed Ali Nojoumi, Fatemeh Yazdian, Mukesh Kumar Awasthi, Mohammad J. Taherzadeh
Microorganisms.2022; 10(12): 2355. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - The Methods of Digging for “Gold” within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools
Jakub Lach, Paulina Jęcz, Dominik Strapagiel, Agnieszka Matera-Witkiewicz, Paweł Stączek
Genes.2021; 12(11): 1756. CrossRef - Genomic characterization of nine Clostridioides difficile strains isolated from Korean patients with Clostridioides difficile infection
Seung Woo Ahn, Se Hee Lee, Uh Jin Kim, Hee-Chang Jang, Hak-Jong Choi, Hyon E. Choy, Seung Ji Kang, Seong Woon Roh
Gut Pathogens.2021;[Epub] CrossRef - Haloplanus rubicundus sp. nov., an extremely halophilic archaeon isolated from solar salt
Yeon Bee Kim, Joon Yong Kim, Hye Seon Song, Se Hee Lee, Na-Ri Shin, Jin-Woo Bae, Jinjong Myoung, Ki-Eun Lee, In-Tae Cha, Jin-Kyu Rhee, Seong Woon Roh
Systematic and Applied Microbiology.2020; 43(3): 126085. CrossRef - Characterization of a potential probiotic bacterium Lactococcus raffinolactis WiKim0068 isolated from fermented vegetable using genomic and in vitro analyses
Min Young Jung, Changsu Lee, Myung-Ji Seo, Seong Woon Roh, Se Hee Lee
BMC Microbiology.2020;[Epub] CrossRef - Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food
Young Joon Oh, Joon Yong Kim, Hee Eun Jo, Hyo Kyeong Park, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2020; 58(5): 387. CrossRef - Effects of an auxin-producing symbiotic bacterium on cell growth of the microalga Haematococcus pluvialis: Elevation of cell density and prolongation of exponential stage
Changsu Lee, Min Seo Jeon, Joon Yong Kim, Se Hee Lee, Dae Geun Kim, Seong Woon Roh, Yoon-E Choi
Algal Research.2019; 41: 101547. CrossRef - Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
Young Joon Oh, Joon Yong Kim, Hyo Kyeong Park, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2019; 57(11): 997. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - Propionibacterium freudenreichii CIRM-BIA 129 Osmoadaptation Coupled to Acid-Adaptation Increases Its Viability During Freeze-Drying
Floriane Gaucher, Koffigan Kponouglo, Houem Rabah, Sylvie Bonnassie, Jordane Ossemond, Sandrine Pottier, Julien Jardin, Valérie Briard-Bion, Pierre Marchand, Philippe Blanc, Romain Jeantet, Gwénaël Jan
Frontiers in Microbiology.2019;[Epub] CrossRef
- Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi
-
Young Joon Oh , Ja-Young Jang , Seul Ki Lim , Min-Sung Kwon , Jieun Lee , NamHee Kim , Mi-Young Shin , Hyo Kyeong Park , Myung-Ji Seo , Hak-Jong Choi
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J. Microbiol. 2017;55(12):933-938. Published online December 7, 2017
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DOI: https://doi.org/10.1007/s12275-017-7386-3
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1,038
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Abstract
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A Gram-stain-positive, halophilic, rod-shaped, non-motile,
spore forming bacterium, strain NKC1-2T, was isolated from
kimchi, a Korean fermented food. Comparative analysis based
on 16S rRNA gene sequence demonstrated that the isolated
strain was a species of the genus Virgibacillus. Strain NKC1-
2T exhibited high level of 16S rRNA gene sequence similarity
with the type strains of Virgibacillus xinjiangensis SL6-1T
(96.9%), V. sediminis YIM kkny3T (96.8%), and V. salarius
SA-Vb1T (96.7%). The isolate grew at pH 6.5–10.0 (optimum,
pH 8.5–9.0), 0.0–25.0% (w/v) NaCl (optimum, 10–15% NaCl),
and 15–50°C (optimum, 37°C). The major menaquinone in
the strain was menaquinone-7, and the main peptidoglycan
of the strain was meso-diaminopimelic acid. The predominant
fatty acids of the strain were iso-C14:0, anteisio-C15:0, iso-
C15:0, and iso-C16:0 (other components were < 10.0%). The
polar lipids consisted of diphosphatidylglycerol and phosphatidylglycerol.
The genomic DNA G + C content of NKC1-2T
was 42.5 mol%. On the basis of these findings, strain NKC1-
2T is proposed as a novel species in the genus Virgibacillus,
for which the name Virgibacillus kimchii sp. nov. is proposed
(=KACC 19404T =JCM 32284T). The type strain of Virgibacillus
kimchii is NKC1-2T.
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Citations
Citations to this article as recorded by - Virgibacillus saliphilus sp. nov. and Virgibacillus salidurans sp. nov., isolated from kimchi
Young Joon Oh, Joon Yong Kim, Min-Sung Kwon, Sulhee Lee, Sang-Pil Choi, Hak-Jong Choi
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Saloni Singh, Ayushi Goyal, Kakoli Dutt
The Applied Biology & Chemistry Journal.2024; : 12. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
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- Gracilibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi§
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Young Joon Oh , Hae-Won Lee , Seul Ki Lim , Min-Sung Kwon , Jieun Lee , Ja-Young Jang , Hae Woong Park , Young-Do Nam , Myung-Ji Seo , Hak-Jong Choi
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J. Microbiol. 2016;54(9):588-593. Published online August 31, 2016
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DOI: https://doi.org/10.1007/s12275-016-6349-4
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Abstract
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A novel halophilic bacterium, strain K7T, was isolated from
kimchi, a traditional Korean fermented food. The strain is
Gram-positive, motile, and produces terminal endospores.
The isolate is facultative aerobic and grows at salinities of
0.0–25.0% (w/v) NaCl (optimum 10–15% NaCl), pH 5.5–8.5
(optimum pH 7.0–7.5), and 15–42°C (optimum 37°C). The
predominant isoprenoid quinone in the strain is menaquinone-
7 and the peptidoglycan of the strain is meso-diaminopimelic
acid. The major fatty acids of the strain are anteisio-
C15:0, iso-C15:0, and, C16:0 (other components were < 10.0%),
while the major polar lipids are diphosphatidylglycerol, phosphatidylglycerol,
phosphatidylcholine, and three unidentified
lipids. A phylogenetic analysis of 16S rRNA gene sequence
similarity showed that the isolated strain was a cluster of the
genus Gracilibacillus. High levels of gene sequence similarity
were observed between strain K7T and Gracilibacillus orientalis
XH-63T (96.5%), and between the present strain and
Gracilibacillus xinjiangensis (96.5%). The DNA G+C content
of this strain is 37.7 mol%. Based on these findings, strain
K7T is proposed as a novel species: Gracilibacillus kimchii sp.
nov. The type strain is K7T (KACC 18669T; JCM 31344T).
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