- Phylogenetic comparison of Epstein-Barr virus genomes
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Su Jin Choi , Seok Won Jung , Sora Huh , Hyosun Cho , Hyojeung Kang
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J. Microbiol. 2018;56(8):525-533. Published online June 14, 2018
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DOI: https://doi.org/10.1007/s12275-018-8039-x
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Technologies used for genome analysis and whole genome
sequencing are useful for us to understand genomic characterization
and divergence. The Epstein-Barr virus (EBV)
is an oncogenic virus that causes diverse diseases such as
Burkitt’s lymphoma (BL), nasopharyngeal carcinoma (NPC),
Hodgkin’s lymphoma (HL), and gastric carcinoma (GC). EBV
genomes found in these diseases can be classified either by
phases of EBV latency (type-I, -II, and -III latency) or types
of EBNA2 sequence difference (type-I EBV, type-II EBV or
EBV-1, EBV-2). EBV from EBV-transformed lymphoblastoid
cell line (LCL) establishes type-III latency, EBV from NPC
establishes type-II latency, and EBV from GC establishes
type-I latency. However, other important factors play key
roles in classifying numerous EBV strains because EBV genomes
are highly diverse and not phylogenetically related
to types of EBV-associated diseases. Herein, we first reviewed
previous studies to describe molecular characteristics of EBV
genomes. Then, using comparative and phylogenetic analyses,
we phylogenetically analyzed molecular variations of EBV
genomes and proteins. The review of previous studies and
our phylogenetic analysis showed that EBV genomes and
proteins were highly diverse regardless of types of EBV-associated
diseases. Other factors should be considered in determining
EBV taxonomy. This review will be helpful to understand
complicated phylogenetic relationships of EBV genomes.
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Citations
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- Allogeneic hematopoietic stem cell transplantation for the treatment of chronic active Epstein–Barr virus infection
Yu Wang, Jiaying Wu, Xiaobing Huang, Yi Xiao Cell Transplantation.2026;[Epub] CrossRef - Molecular genetic factors of oncogenesis associated with the Epstein–Barr virus
Nikolay A. Sakharnov, Oleg V. Utkin, Sergey P. Dmitriev, Elena N. Filatova, Svyatoslav V. Zinoviev, Nikita A. Suslov, Sergey V. Gamayunov Advances in Molecular Oncology.2026; 13(1): 30. CrossRef - Targeted Epstein–Barr virus capture sequencing identifies BBLF4-L322M as an independent prognostic variant in nasopharyngeal carcinoma
Shi Luo, Zongjian Huang, Nan Shi, Fangfang Chen, Weiren Xiang, Yu Ren, Wei Xia, Anzhou Tang, Hyun Jin Kwun Microbiology Spectrum.2026;[Epub] CrossRef - An Ancient Epstein-Barr Virus Genome Recovered From a Museum Penis Sheath From Papua
Anaïs Augias, Gabriel Yaxal Ponce-Soto, Amélie Chimènes, Philippe Charlier, Nicolás Rascovan The Journal of Infectious Diseases.2025; 232(3): 745. CrossRef - EBV-miR-BART5-5p regulates RORA to promote proliferation and migration of gastric cancer cells
Changqi Du, Shuang Liang, Xia Wang, Yujiao Qi, Shangdong Li, Hongling Li, Luwen Zhang PLOS One.2025; 20(7): e0327323. CrossRef - Main immunogenetic, pathogenetic, and clinical features of Epstein-Barr virus infection (literature review)
M. Chemych, O. Saienko, V. Svitailo, N. Klymenko, O. Chemych Inter Collegas.2025; 12(2): 29. CrossRef - Mechanistic Understanding of EBV+Lymphoproliferative Disease Development After Transplantation
Philippe L. Furlano, Georg A. Böhmig, Elisabeth Puchhammer-Stöckl, Hannes Vietzen Transplantation.2024; 108(9): 1867. CrossRef - Aquaporin-3 is down-regulated by LMP1 in nasopharyngeal carcinoma cells to regulate cell migration and affect EBV latent infection
Jing Li, Duo Shi, Zhiyuan Gong, Wen Liu, Yan Zhang, Bing Luo Virus Genes.2024; 60(5): 488. CrossRef - Characterization of a new CCCTC-binding factor binding site as a dual regulator of Epstein-Barr virus latent infection
Sun Hee Lee, Kyoung-Dong Kim, Miyeon Cho, Sora Huh, Seong Ho An, Donghyun Seo, Kyuhyun Kang, Minhee Lee, Hideki Tanizawa, Inuk Jung, Hyosun Cho, Hyojeung Kang, JJ Miranda PLOS Pathogens.2023; 19(1): e1011078. CrossRef - Profiling genome-wide recombination in Epstein Barr virus reveals type-specific patterns and associations with endemic-Burkitt lymphoma
Eddy O. Agwati, Cliff I. Oduor, Cyrus Ayieko, John Michael Ong’echa, Ann M. Moormann, Jeffrey A. Bailey Virology Journal.2022;[Epub] CrossRef - Epstein–Barr Virus (EBV) Epithelial Associated Malignancies: Exploring Pathologies and Current Treatments
Oren Shechter, Daniel G. Sausen, Elisa S. Gallo, Harel Dahari, Ronen Borenstein International Journal of Molecular Sciences.2022; 23(22): 14389. CrossRef - Current approach and novel perspectives in nasopharyngeal carcinoma: the role of targeting proteasome dysregulation as a molecular landmark in nasopharyngeal cancer
Ramon Yarza, Mateo Bover, Maria Teresa Agulló-Ortuño, Lara Carmen Iglesias-Docampo Journal of Experimental & Clinical Cancer Research.2021;[Epub] CrossRef - Interplay between Epstein-Barr virus infection and environmental xenobiotic exposure in cancer
Francisco Aguayo, Enrique Boccardo, Alejandro Corvalán, Gloria M. Calaf, Rancés Blanco Infectious Agents and Cancer.2021;[Epub] CrossRef - Stress-Induced Epstein-Barr Virus Reactivation
Daniel Sausen, Maimoona Bhutta, Elisa Gallo, Harel Dahari, Ronen Borenstein Biomolecules.2021; 11(9): 1380. CrossRef - Epstein‐Barr virus strain variation and cancer
Teru Kanda, Misako Yajima, Kazufumi Ikuta Cancer Science.2019; 110(4): 1132. CrossRef - A reliable Epstein-Barr Virus classification based on phylogenomic and population analyses
Louise Zanella, Ismael Riquelme, Kurt Buchegger, Michel Abanto, Carmen Ili, Priscilla Brebi Scientific Reports.2019;[Epub] CrossRef - Novel Synthetic DNA Immunogens Targeting Latent Expressed Antigens of Epstein–Barr Virus Elicit Potent Cellular Responses and Inhibit Tumor Growth
Krzysztof Wojtak, Alfredo Perales-Puchalt, David B. Weiner Vaccines.2019; 7(2): 44. CrossRef
- Anti-tumor effect of Cordyceps militaris in HCV-infected human hepatocarcinoma 7.5 cells
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Seulki Lee , Hwan Hee Lee , Jisung Kim , Joohee Jung , Aree Moon , Choon-Sik Jeong , Hyojeung Kang , Hyosun Cho
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J. Microbiol. 2015;53(7):468-474. Published online June 27, 2015
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DOI: https://doi.org/10.1007/s12275-015-5198-x
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949
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Cordyceps extract has been reported to have various pharmacological
activities including an anti-cancer effect. We
investigated the inhibitory effect of Cordyceps militaris on
hepatitis C virus-infected human hepatocarcinoma 7.5 cells
(J6/JFH1-huh 7.5 cells). The huh7.5 cells with or without
HCV infection were treated with various concentrations of
ethanol extract of Cordyceps militaris (CME) for 48 h and the
cytotoxicity was measured by CCK-8 assay. Both J6/JFH1-
huh7.5 cells and huh7.5 cells were highly susceptible to CME.
To examine the molecular mechanisms of the inhibitory effect
on huh7.5 cells, the effect of CME on cell apoptosis was
measured using flow cytometry and the expressions of p53,
Bim, Bax, PARP, (cleaved) caspase-9, and (cleaved) caspase-
3 in huh 7.5 cells were detected by western blot assays. CME
significantly increased early apoptosis and up-regulated the
expression of Bim, Bax, cleaved PARP, cleaved caspase 9
and cleaved caspase-3. We also found the decrease of HCV
Core or NS3 protein by CME in HCV-infected huh 7.5 cells.
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Citations
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- Visualized Nucleic Acid Hybridization Lateral Flow Strip Integrating with Microneedle for the Point-of-Care Authentication of Ophiocordyceps sinensis
Haibin Liu, Xinyue Wang, Hang Tian, Yi Yuan, Jing Wang, Yani Cheng, Linyao Sun, Hongshuo Chen, Xiaoming Song International Journal of Molecular Sciences.2024; 25(24): 13599. CrossRef - Novel formulation development from Ophiocordyceps sinensis (Berk.) for management of high-altitude maladies
Rakhee, Jigni Mishra, Renu Bala Yadav, D. K. Meena, Rajesh Arora, R. K. Sharma, Kshipra Misra 3 Biotech.2021;[Epub] CrossRef - A new nucleoside and two new pyrrole alkaloid derivatives from Cordyceps militaris
Yafu Xue, Leilei Wu, Yulian Ding, Xinming Cui, Zhuzhen Han, Hong Xu Natural Product Research.2020; 34(3): 341. CrossRef - Antitumor and Anti-Invasive Effect of Apigenin on Human Breast Carcinoma through Suppression of IL-6 Expression
Hwan Hee Lee, Joohee Jung, Aree Moon, Hyojeung Kang, Hyosun Cho International Journal of Molecular Sciences.2019; 20(13): 3143. CrossRef - Cytokine-Modulated Natural Killer Cells Differentially Regulate the Activity of the Hepatitis C Virus
Yoo Cho, Hwan Lee, Hyojeung Kang, Hyosun Cho International Journal of Molecular Sciences.2018; 19(9): 2771. CrossRef - The genus Cordyceps : An extensive review of its traditional uses, phytochemistry and pharmacology
Opeyemi Joshua Olatunji, Jian Tang, Adesola Tola, Florence Auberon, Omolara Oluwaniyi, Zhen Ouyang Fitoterapia.2018; 129: 293. CrossRef - Systems Pharmacology-based strategy to screen new adjuvant for hepatitis B vaccine from Traditional Chinese Medicine Ophiocordyceps sinensis
Jingbo Wang, Rui Liu, Baoxiu Liu, Yan Yang, Jun Xie, Naishuo Zhu Scientific Reports.2017;[Epub] CrossRef - Anti-Cancer Effect of Quercetin in Xenograft Models with EBV-Associated Human Gastric Carcinoma
Hwan Lee, Seulki Lee, Yu Shin, Miyeon Cho, Hyojeung Kang, Hyosun Cho Molecules.2016; 21(10): 1286. CrossRef - Anti-tumor effect of Inonotus obliquus in xenograft animals with EBV+human gastric carcinoma
Seulki Lee, Hyosun Cho The Korean Journal of Microbiology.2016; 52(4): 482. CrossRef
- Genipin as a novel chemical activator of EBV lytic cycle
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Myoungki Son , Minjung Lee , Eunhyun Ryu , Aree Moon , Choon-Sik Jeong , Yong Woo Jung , Gyu Hwan Park , Gi-Ho Sung , Hyosun Cho , Hyojeung Kang
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J. Microbiol. 2015;53(2):155-165. Published online January 28, 2015
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DOI: https://doi.org/10.1007/s12275-015-4672-9
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917
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Abstract
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Epstein-Barr virus (EBV) is a ubiquitous gammaherpesvirus
that causes acute infection and establishes life-long latency.
EBV causes several human cancers, including Burkitt's lymphoma,
nasopharyngeal and gastric carcinoma. Antiviral
agents can be categorized as virucides, antiviral chemotherapeutic
agents, and immunomodulators. Most antiviral agents
affect actively replicating viruses, but not their latent forms.
Novel antiviral agents must be active on both the replicating
and the latent forms of the virus. Gardenia jasminoides is an
evergreen flowering plant belonging to the Rubiaceae family
and is most commonly found growing wild in Vietnam,
Southern China, Taiwan, Japan, Myanmar, and India. Genipin
is an aglycone derived from an iridoid glycoside called geniposide,
which is present in large quantities in the fruit of
G. jasminoides. In this study, genipin was evaluated for its
role as an antitumor and antiviral agent that produces inhibitory
effects against EBV and EBV associated gastric carcinoma
(EBVaGC). In SNU719 cells, one of EBVaGCs, genipin
caused significant cytotoxicity (70 μM), induced methylation
on EBV C promoter and tumor suppressor gene
BCL7A, arrested cell-cycle progress (S phases), upregulated
EBV latent/lytic genes in a dose-dependent manner, stimulated
EBV progeny production, activated EBV F promoter
for EBV lytic activation, and suppressed EBV infection. These
results indicated that genipin could be a promising candidate
for antiviral and antitumor agents against EBV and
EBVaGC.
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- Anti-influenza Effect of Cordyceps militaris through Immunomodulation in a DBA/2 Mouse Model
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Hwan Hee Lee , Heejin Park , Gi-Ho Sung , Kanghyo Lee , Taeho Lee , Ilseob Lee , Man-seong Park , Yong Woo Jung , Yu Su Shin , Hyojeung Kang , Hyosun Cho
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J. Microbiol. 2014;52(8):696-701. Published online July 18, 2014
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DOI: https://doi.org/10.1007/s12275-014-4300-0
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1,106
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The immune-modulatory as well as anti-influenza effects of Cordyceps extract were investigated using a DBA/2 mouse model. Three different concentrations of Cordyceps extract, red ginseng extract, or drinking water were orally administered
to mice for seven days, and then the mice were intranasally infected with 2009 pandemic influenza H1N1 virus. Body weight changes and survival rate were measured daily post-infection. Plasma IL-12, TNF-α, and the frequency of
natural killer (NK) cells were measured on day 4 post-infection. The DBA/2 strain was highly susceptible to H1N1 virus infection. We also found that Cordyceps extract had an antiinfluenza effect that was associated with stable body weight
and reduced mortality. The anti-viral effect of Cordyceps extract on influenza infection was mediated presumably by increased IL-12 expression and greater number of NK cells. However, high TNF-α expression after infection of H1N1
virus in mice not receiving treatment with Cordyceps extract suggested a two-sided effect of the extract on host immune regulation.
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- Bioactive Activities of Natural Products against Herpesvirus Infection
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Myoungki Son , Minjung Lee , Gi-Ho Sung , Taeho Lee , Yu Su Shin , Hyosun Cho , Paul M. Lieberman , Hyojeung Kang
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J. Microbiol. 2013;51(6):888-888.
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DOI: https://doi.org/10.1007/s12275-013-0726-z
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Abstract
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In the article by Son et al. published in the Journal of Microbiology 2013; 51, 545-551.
- Acknowledgement should appear as shown below.
We gratefully acknowledge financial supports of Next Generation BioGreen 21 Program (Project No. PJ009508) and
Cooperative Research Program for Agriculture Science & Technology Development (Project No. PJ009241) from
Rural Development Administration, Republic of Korea.
- Co-corresponding author’s (Dr. Paul M. Lieberman) affiliation should appear as shown below.
6The Wistar Institute, Philadelphia, PA 19104, USA
- Bioactive Activities of Natural Products against Herpesvirus Infection
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Myoungki Son , Minjung Lee , Gi-Ho Sung , Taeho Lee , Yu Su Shin , Hyosun Cho , Paul M. Lieberman , Hyojeung Kang
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J. Microbiol. 2013;51(5):545-551. Published online October 31, 2013
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DOI: https://doi.org/10.1007/s12275-013-3450-9
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969
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Abstract
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More than 90% of adults have been infected with at least one human herpesvirus, which establish long-term latent infection for the life of the host. While anti-viral drugs exist that limit herpesvirus replication, many of these are ineffective against latent infection. Moreover, drug-resistant strains of herpesvirus emerge following chemotherapeutic treatment. For example, resistance to acyclovir and related nucleoside analogues can occur when mutations arise in either HSV thymidine kinase or DNA polymerases. Thus, there exists an unmet medical need to develop new anti-herpesvirus agents with different mechanisms of action. In this Review, we discuss the promise of anti-herpetic substances derived from natural products including extracts and pure compounds from potential herbal medicines. One example is Glycyrrhizic acid isolated from licorice that shows promising antiviral activity towards human gammaherpesviruses. Secondly, we discuss anti-herpetic mechanisms utilized by several natural products in molecular level. While nucleoside analogues inhibit replicating herpesviruses in lytic replication, some natural products can disrupt the herpesvirus latent infection in the host cell. In addition, natural products can stimulate immune responses against herpesviral infection. These findings suggest that natural products could be one of the best choices for development of new treatments for latent herpesvirus infection, and may provide synergistic anti-viral activity when supplemented with nucleoside analogues. Therefore, it is important to identify which natural products are more efficacious anti-herpetic agents, and to understand the molecular mechanism in detail for further advance in the anti-viral therapies.
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- Dysregulation of KSHV Replication by Extracts from Carthamus tinctorius L.
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Han Lee , Hyosun Cho , Myoungki Son , Gi-Ho Sung , Taeho Lee , Sang-Won Lee , Yong Woo Jung , Yu Su Shin , Hyojeung Kang
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J. Microbiol. 2013;51(4):490-498. Published online August 30, 2013
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DOI: https://doi.org/10.1007/s12275-013-3282-7
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Carthamus tinctorius L. (CT) is traditionally used to reduce ailments from diseases of the musculoskeletal system and connective tissue and diseases of blood circulation and the cardiovascular system. Flower extracts from CT are known to have antibacterial activity, anti-inflammatory activity, and to inhibit tumor promotion in mouse skin carcinogenesis. In order to discover new antiviral agents from CT extracts, we tested whether CT extracts contain antiviral activity against gammaherpesvirus infection. This study demonstrated that treatment with CT extracts disrupted KSHV latency in the viral-infected host cells, iSLK-BAC16. n-Hexane and EtOH fractions of CT extracts critically affected at least two stages of the KHSV life-cycle by abnormally inducing KSHV lytic reactivation and by severely preventing KSHV virion release from the viral host cells. In addition to the effects on
KSHV itself, CT extract treatments induced cellular modifications by dysregulating cell-cycle and producing strong cytotoxicity. This study demonstrated for the first time that CT extracts have antiviral activities that could be applied to development of new anti-gammaherpesviral agents.
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Hyosun Cho , Hyojeung Kang
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J. Microbiol. 2012;50(2):285-292. Published online April 27, 2012
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DOI: https://doi.org/10.1007/s12275-012-1495-9
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742
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Abstract
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Kaposi’s sarcoma-associated herpesvirus (KSHV) is the
causative agent of two B cell lymphoproliferative diseases,
namely primary effusion lymphoma (PEL) and multicentric
Castleman’s disease (MCD). KSHV infection of B cell lymphoma
in vitro has been a long-standing battle in advancing
human KSHV biology. In this study, a modified form of
KSHV BAC36 named BAC36A significantly increased the
fidelity of gene-targeted site-directed mutagenesis in the
KSHV genome. This modification eliminates tedious screening
steps required to obtain mutant clones when a KSHV
BAC36 reverse genetic system is used. Coculturing B-cell
lymphoma BJAB cells with KSHV BAC36A stably transfected
293T cells enabled us to infect BJAB cells with a
KSHV virion derived from the KSHV BAC36A. The coculture
system produced substantial amounts of KSHV infection
to BJAB, meaning that KSHV virions were released
from 293T cells and then infected neighboring BJAB cells.
Owing to our success with the KSHV BAC36A and coculture
system, we propose a new genetic system for the study of
KSHV gene expression and regulation in B-cell lymphoma.
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Stephen J. Dollery, Rey J. Santiago-Crespo, Deboeeta Chatterjee, Edward A. Berger, Richard M. Longnecker Journal of Virology.2019;[Epub] CrossRef - Primary lymphocyte infection models for KSHV and its putative tumorigenesis mechanisms in B cell lymphomas
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Wan Li, Xuemei Jia, Chenyou Shen, Mi Zhang, Jingyun Xu, Yuancui Shang, Kaixiang Zhu, Minmin Hu, Qin Yan, Di Qin, Myung-Shin Lee, Jianzhong Zhu, Hongmei Lu, Brian J. Krueger, Rolf Renne, Shou-Jiang Gao, Chun Lu Oncotarget.2016; 7(22): 32286. CrossRef - Recent advances in the study of Kaposi’s sarcoma-associated herpesvirus replication and pathogenesis
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Hyosun Cho , Hyojeung Kang
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J. Microbiol. 2012;50(1):79-90. Published online February 27, 2012
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DOI: https://doi.org/10.1007/s12275-012-1353-9
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853
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Abstract
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An ATP-binding cassette (ABC) transporter, called the PseEF
efflux system, was identified at the left border of the syr-syp
genomic island of Pseudomonas syringae pv. syringae strain
B301D. The PseEF efflux system was located within a 3.3-kb
operon that encodes a periplasmic membrane fusion protein
(PseE), and an ABC-type cytoplasmic membrane protein
(PseF). The PseEF efflux system exhibited amino acid homology
to a putative ABC efflux system (MacAB) of E. coli
W3104 with identities of 47.2% (i.e., PseE to MacA) and
57.6% (i.e., PseF to MacB). A nonpolar mutation within the
pseF gene was generated by nptII insertional mutagenesis.
The resultant mutant strain showed significant reduction in
secretion of syringomycin (74%) and syringopeptin (71%),
as compared to parental strain B301D. Quantitative real-time
RT-PCR was used to determine transcript levels of the syringomycin
(syrB1) and syringopeptin (sypA) synthetase
genes in strain B301D-HK7 (a pseF mutant). Expression of
the sypA gene by mutant strain B301D-HK7 was approximately
6.9% as compared to that of parental strain B301D,
while the syrB1 gene expression by mutant strain B301D-HK7
was nearly 14.6%. In addition, mutant strain B301D-HK7
was less virulent by approximately 67% than parental strain
B301D in immature cherry fruits. Mutant strain B301D-HK7
was not reduced in resistance to any antibiotics used in this
study as compared to parental strain B301D. Expression
(transcript levels) of the pseF gene was induced approximately
six times by strain B301D grown on syringomycin
minimum medium (SRM) supplemented with the plant signal
molecules arbutin and D-fructose (SRMAF), as compared to
that of strain B301D grown on SRM (in the absence of plant
signal molecules). In addition, during infection of bean
plants by P. syringae pv. syringae strain B728a, expression
of the pseF gene increased at 3 days after inoculation (dai).
More than 180-fold induction was observed in transcript
levels of the pseF gene by parental strain B728a as compared
to strain B728a-SL7 (a salA mutant). Thus, the PseEF
efflux system, an ABC-type efflux system, has an important
role in secretion of syringomycin and syringopeptin, and is
required for full virulence in P. syringae pv. syringae.
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