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Hyeon-Dong Shin 5 Articles
The Proportion of Non-Aflatoxigenic Strains of the Aspergillus flavus/oryzae Complex from Meju by Analyses of the Aflatoxin Biosynthetic Genes
Seung-Beom Hong , Mina Lee , Dae-Ho Kim , Soo-Hyun Chung , Hyeon-Dong Shin , Robert A. Samson
J. Microbiol. 2013;51(6):766-772.   Published online December 19, 2013
DOI: https://doi.org/10.1007/s12275-013-3128-3
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AbstractAbstract PDF
Strains of the Aspergillus flavus/oryzae complex are frequently isolated from meju, a fermented soybean product, that is used as the starting material for ganjang (soy sauce) and doenjang (soybean paste) production. In this study, we examined the aflatoxin producing capacity of A. flavus/oryzae strains isolated from meju. 192 strains of A. flavus/oryzae were isolated from more than 100 meju samples collected from diverse regions of Korea from 2008 to 2011, and the norB-cypA, omtA, and aflR genes in the aflatoxin biosynthesis gene cluster were analyzed. We found that 178 strains (92.7%) belonged to non-aflatoxigenic group (Type I of norB-cypA, IB-L-B-, IC-AO, or IA-L-B- of omtA, and AO type of aflR), and 14 strains (7.3%) belonged to aflatoxin-producible group (Type II of norB-cypA, IC-L-B+/B- or IC-L-B+ of omtA, and AF type of aflR). Only 7 strains (3.6%) in the aflatoxin-producible group produced aflatoxins on Czapek yeast-extract medium. The aflatoxin-producing capability of A. flavus/ oryzae strains from other sources in Korea were also investigated, and 92.9% (52/56) strains from air, 93.9% (31/33) strains from rice straw, 91.7% (11/12) strains from soybean, 81.3% (13/16) strains from corn, 82% (41/50) strains from peanut, and 73.2% (41/56) strains from arable soil were included in the non-aflatoxigenic group. The proportion of non-aflatoxigenicity of meju strains was similar to that of strains from soybean, air and rice straw, all of which have an effect on the fermentation of meju. The data suggest that meju does not have a preference for non-aflatoxigenic or aflatoxin-producible strains of A. flavus/oryzae from the environment of meju. The non-aflatoxigenic meju strains are proposed to be named A. oryzae, while the meju strains that can produce aflatoxins should be referred to A. flavus in this study.

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  • Genome diversity, population structure and MALDI-TOF MS profiling of Aspergillus oryzae/flavus strains from fermentation and wild environments
    Dong-Hyun Kim, Dong-Chan Kim, Donggun Seo, Ki-Tae Kim, Sang-Han Lee, Seung-Beom Hong
    BMC Genomics.2025;[Epub]     CrossRef
  • Distinction Between Aspergillus oryzae and Aflatoxigenic Aspergillus flavus by Rapid PCR Method Based on the Comparative Sequence Analysis of the Aflatoxin Biosynthesis Gene Cluster
    Eunji Jeong, Yoo Jin Kwon, Jeong-Ah Seo
    Journal of Fungi.2025; 12(1): 10.     CrossRef
  • Inhibitory Effects of Bacillus subtilis Isolated from Meju (Fermented Soybean Brick) on the Growth of Aspergillus parasiticus
    Jong-Gyu Kim, Jeong-Yeong Park
    Applied Microbiology.2024; 4(1): 354.     CrossRef
  • Analysis of microbial community and the characterization of Aspergillus flavus in Liuyang Douchi during fermentation
    Yi Chen, Pao Li, Weiwei He, Luyan Liao, Bo Xia, Liwen Jiang, Yang Liu
    LWT.2022; 154: 112567.     CrossRef
  • Effect of allyl isothiocyanate on transcriptional profile, aflatoxin synthesis, and Aspergillus flavus growth
    Tiago de Melo Nazareth, Manuel Alonso-Garrido, Oana Stanciu, Jordi Mañes, Lara Manyes, Giuseppe Meca
    Food Research International.2020; 128: 108786.     CrossRef
  • Safety of the fungal workhorses of industrial biotechnology: update on the mycotoxin and secondary metabolite potential of Aspergillus niger, Aspergillus oryzae, and Trichoderma reesei
    Jens C. Frisvad, Lars L. H. Møller, Thomas O. Larsen, Ravi Kumar, José Arnau
    Applied Microbiology and Biotechnology.2018; 102(22): 9481.     CrossRef
  • A comparative secretome analysis of industrial Aspergillus oryzae and its spontaneous mutant ZJGS-LZ-21
    Yuanyuan Zhu, Xinle Liang, Hong Zhang, Wei Feng, Ye Liu, Fuming Zhang, Robert J Linhardt
    International Journal of Food Microbiology.2017; 248: 1.     CrossRef
  • Mold and Human Health: a Reality Check
    Andrea T. Borchers, Christopher Chang, M. Eric Gershwin
    Clinical Reviews in Allergy & Immunology.2017; 52(3): 305.     CrossRef
  • Addition of Carbon to the Culture Medium Improves the Detection Efficiency of Aflatoxin Synthetic Fungi
    Tadahiro Suzuki, Yumiko Iwahashi
    Toxins.2016; 8(11): 338.     CrossRef
  • Mycobiota of ground red pepper and their aflatoxigenic potential
    Hyeonheui Ham, Sosoo Kim, Min-Hee Kim, Soohyung Lee, Sung Kee Hong, Jae-Gee Ryu, Theresa Lee
    Journal of Microbiology.2016; 54(12): 832.     CrossRef
  • Species List of Aspergillus, Penicillium and Talaromyces in Korea, Based on ‘One Fungus One Name’ System

    The Korean Journal of Mycology.2016;[Epub]     CrossRef
  • Taxonomic Characterization and Safety of Nuruk Molds Used Industrially in Korea

    The Korean Journal of Mycology.2015;[Epub]     CrossRef
  • High sequence variations in the region containing genes encoding a cellular morphogenesis protein and the repressor of sexual development help to reveal origins of Aspergillus oryzae
    Perng-Kuang Chang, Leslie L. Scharfenstein, Cesar D. Solorzano, Hamed K. Abbas, Sui-Sheng T. Hua, Walker A. Jones, Robert M. Zablotowicz
    International Journal of Food Microbiology.2015; 200: 66.     CrossRef
  • The potential hazards of Aspergillus sp. in foods and feeds, and the role of biological treatment: A review
    Sheikh Imranudin Sheikh-Ali, Akil Ahmad, Siti-Hamidah Mohd-Setapar, Zainul Akmal Zakaria, Norfahana Abdul-Talib, Aidee Kamal Khamis, Md Enamul Hoque
    Journal of Microbiology.2014; 52(10): 807.     CrossRef
  • Diversity, Saccharification Capacity, and Toxigenicity Analyses of Fungal Isolates in Nuruk
    Min Sik Kim, Sinil Kim, Byeong-Seok Ha, Hye-Young Park, Seong-Yeol BaeK, Soo-Hwan Yeo, Hyeon-Su Ro
    The Korean Journal of Mycology.2014; 42(3): 191.     CrossRef
Mitochondrial Phylogeny Reveals Intraspecific Variation in Peronospora effusa, the Spinach Downy Mildew Pathogen
Young-Joon Choi , Marco Thines , Jae-Gu Han , Hyeon-Dong Shin
J. Microbiol. 2011;49(6):1039-1043.   Published online December 28, 2011
DOI: https://doi.org/10.1007/s12275-011-1069-2
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AbstractAbstract PDF
Since about two hundred years, downy mildew caused by Peronospora effusa is probably the most economically important disease of spinach (Spinacia oleracea). However, there is no information on the global phylogeographic structure of the pathogen and thus it is unclear whether a single genotype occurs worldwide
or whether some local genetic variation exists. To investigate the genetic variability of this pathogen, a sequence analysis of two partial mitochondrial DNA genes, cox2 and nad1, was carried out. Thirty-three specimens of Peronospora effusa from four continents were analyzed, including samples from Australia, China, Japan, Korea, Mexico, Russia, Sweden, and the USA. Despite the potential anthropogenic admixture of genotypes, a phylogeographic pattern was observed, which corresponds to two major groups, an Asian/Oceanian clade and another group, which includes American/European specimens. Notably, two of six Japanese specimens investigated did not belong to the Asian/Oceanian clade, but were identical to three of the specimens from the USA, suggestive of a recent introduction from the USA to Japan. As similar introduction events may be occurring as a result of the globalised trade with plant and seed material, a better knowledge of the phylogeographic distribution of pathogens is highly warranted for food security purposes.

Citations

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  • Sexual reproduction contributes to the evolution of resistance‐breaking isolates of the spinach pathogen Peronospora effusa
    Petros Skiadas, Joël Klein, Thomas Quiroz‐Monnens, Joyce Elberse, Ronnie de Jonge, Guido Van den Ackerveken, Michael F. Seidl
    Environmental Microbiology.2022; 24(3): 1622.     CrossRef
  • Population structure and migration of the Tobacco Blue Mold Pathogen, Peronospora tabacina, into North America and Europe
    Monica Blanco‐Meneses, Ignazio Carbone, Jean B. Ristaino
    Molecular Ecology.2018; 27(3): 737.     CrossRef
  • Population Structure of Peronospora effusa in the Southwestern United States
    Rebecca Lyon, James Correll, Chunda Feng, Burt Bluhm, Sandesh Shrestha, Ainong Shi, Kurt Lamour, Rita Grosch
    PLOS ONE.2016; 11(2): e0148385.     CrossRef
  • Evolution of Hyaloperonospora effectors: ATR1 effector homologs from sister species of the downy mildew pathogen H. arabidopsidis are not recognised by RPP1WsB
    Irina Solovyeva, Angelika Schmuker, Liliana M. Cano, Mireille van Damme, Sebastian Ploch, Sophien Kamoun, Marco Thines
    Mycological Progress.2015;[Epub]     CrossRef
  • Towards a universal barcode of oomycetes – a comparison of the cox1 and cox2 loci
    Young‐Joon Choi, Gordon Beakes, Sally Glockling, Julia Kruse, Bora Nam, Lisa Nigrelli, Sebastian Ploch, Hyeon‐Dong Shin, Roger G. Shivas, Sabine Telle, Hermann Voglmayr, Marco Thines
    Molecular Ecology Resources.2015; 15(6): 1275.     CrossRef
  • Characterisation and risk assessment of the emerging Peronospora disease on Aquilegia
    Geoffrey J. Denton, Elizabeth J. Beal, Anne Kilty, Jennifer O. Denton, Young-Joon Choi, Marco Thines
    Mycological Progress.2015;[Epub]     CrossRef
  • Coupling Spore Traps and Quantitative PCR Assays for Detection of the Downy Mildew Pathogens of Spinach (Peronospora effusa) and Beet (P. schachtii)
    Steven J. Klosterman, Amy Anchieta, Neil McRoberts, Steven T. Koike, Krishna V. Subbarao, Hermann Voglmayr, Young-Joon Choi, Marco Thines, Frank N. Martin
    Phytopathology®.2014; 104(12): 1349.     CrossRef
Sawadaea koelreuteriae comb. nov., a Powdery Mildew of Koelreuteria paniculata
Hyeon-Dong Shin , Mi-Jeong Park
J. Microbiol. 2011;49(5):862-866.   Published online November 9, 2011
DOI: https://doi.org/10.1007/s12275-011-1479-1
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AbstractAbstract PDF
A powdery mildew parasitizing Koelreuteria spp. was first described under the name Uncinula koelreuteriae Miyake and later transferred to the genus Typhulochaeta. Based on morphological and molecular data of several herbarium specimens collected from Korea, the generic placement of Typhulochaeta is discussed and T. koelreuteriae is combined in the genus Sawadaea. Redescription and epitypification of this species is provided hereby.

Citations

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  • Phylogeny and taxonomy of Acer powdery mildews, including genera Sawadaea and Takamatsuella (Erysiphaceae, Ascomycota)
    J. Feng, G.X. Guan, X.L. Wu, S.Y. Liu, J.G. Song, M. Bradshaw, M. Götz, U. Braun, S. Takamatsu, V. Heluta, D.N. Jin, S.B. Wang, Y.H. He, Z.Y. Zhang, L. Liu, T.Z. Liu, E.V. Ilyukhin, X.X. Lu, Y. Li
    Studies in Mycology.2025; 112(1): 1.     CrossRef
  • An independent Taiwanese lineage of powdery mildew on the endemic host species Koelreuteria henryi
    Yu-Wei Yeh, Roland Kirschner
    Botanical Studies.2024;[Epub]     CrossRef
  • Phylogeny and taxonomy of the genera of Erysiphaceae, part 4: Erysiphe (the “Uncinula lineage”)
    Michael Bradshaw, Uwe Braun, Donald H. Pfister
    Mycologia.2023; 115(6): 871.     CrossRef
  • Morphology and molecular phylogeny of a poorly known species—Erysiphe bulbouncinula (Erysiphaceae) on Koelreuteria paniculata
    Li Liu, Shu‐Rong Tang, Susumu Takamatsu, Uwe Braun, Yu Li, Shu‐Yan Liu, Michael M. Müller
    Forest Pathology.2020;[Epub]     CrossRef
  • Molecular phylogeny reveals the presence of cryptic speciation within Erysiphe japonica (≡Typhulochaeta japonica), a powdery mildew on Quercus spp.
    Jamjan Meeboon, Susumu Takamatsu
    Mycoscience.2013; 54(1): 69.     CrossRef
A Simple and Reliable Method for Obtaining Entomosporium Monoconidial Isolates
Mi-Jeong Park , Quinn A. Holtslag , Hyeon-Dong Shin
J. Microbiol. 2011;49(2):324-326.   Published online May 3, 2011
DOI: https://doi.org/10.1007/s12275-011-1117-y
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AbstractAbstract PDF
Monoconidial isolates of Entomosporium mespili were successfully cultured using a simple isolation procedure. A detailed description of the steps required for isolating E. mespili is provided. The characteristic pattern of conidial germination and growth on potato dextrose agar is also described. The process that was successful in obtaining pure isolates involved collecting material in the morning, picking a glistening white mass of conidia under dissecting microscope magnification, depositing a mass of conidia onto a drop of water on a glass slide, streaking the conidial mass onto potato dextrose agar, incubating the plate for 48 h, and transferring the characteristic fan-shaped colonies to fresh medium.

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  • Diplocarpon mespilicola sp. nov. Associated with Entomosporium Leaf Spot on Hawthorn in China
    Hao Chen, James F. White, Kamran Malik, Fang Qi, Chunjie Li
    Plant Disease.2022; 106(11): 2884.     CrossRef
  • Occurrence of Leaf Spot on Eriobotrya japonica Caused by Entomosporium mespili in Korea
    Sang-Tae Seo, Mi-Jeong Park, Hyeon-Dong Shin, Kyung-Hee Kim
    Research in Plant Disease.2011; 17(2): 228.     CrossRef
Re-identification of Aspergillus fumigatus sensu lato Based on a New Concept of Species Delimitation
Seung-Beom Hong , Dae-Ho Kim , In-Cheol Park , Young-Joon Choi , Hyeon-Dong Shin , Robert Samson
J. Microbiol. 2010;48(5):607-615.   Published online November 3, 2010
DOI: https://doi.org/10.1007/s12275-010-0084-z
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AbstractAbstract PDF
The species concept of Aspergillus fumigatus sensu stricto has recently been defined by polyphasic taxonomy. Based on the new concept of species delimitations, 146 worldwide strains of Aspergillus fumigatus sensu lato were re-identified. Of those 146 strains, 140 (95.8%) could be identified as A. fumigatus sensu stricto, 3 (2.1%) as A. lentulus, and the remaining 3 strains as A. viridinutans complex, Neosartorya udagawae, and N. cf. nishimurae. Of 98 clinical strains, only 1 from dolphin nostril was identified as A. lentulus and not A. fumigatus sensu stricto. Random amplification of polymorphic DNA-polymerase chain reaction (RAPD-PCR) with primers PELF and URP1F produced nearly the same band patterns among 136 strains of A. fumigatus sensu stricto while discriminated the species from its related species. We also discussed about identification of several atypical A. fumigatus strains from clinical environments.

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  • Re-Assessment of Strains from Aspergillus Section Fumigati and Description of Two Unrecorded Species from Korea
    Anbazhagan Mageswari, Daseul Lee, Jae Sung Lee, Le Dinh Thao, Donghun Kang, Seung-Beom Hong
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    Victor Garcia-Bustos, Begoña Acosta-Hernández, Marta Dafne Cabañero-Navalón, Alba Cecilia Ruiz-Gaitán, Javier Pemán, Inmaculada Rosario Medina
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  • Evaluation of Primers OPF-01, P54, and 1253 to Identify A. fumigatus, A. flavus, and A. niger from Polymorphic Patterns Obtained by RAPD-PCR
    Carlos Alberto Castro-Fuentes, María Guadalupe Frías-De-León, María del Carmen González-Villaseñor, Esperanza Duarte-Escalante, Omar Esteban Valencia-Ledezma, Areli Martínez-Gamboa, Beatriz Meraz-Ríos, María del Rocío Reyes-Montes
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  • Selection of Polymorphic Patterns Obtained by RAPD-PCR through Qualitative and Quantitative Analyses to Differentiate Aspergillus fumigatus
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    Jessica J Talbot, Vanessa R Barrs
    Medical Mycology.2018; 56(1): 1.     CrossRef
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    Inge Kjærbølling, Tammi C. Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald, Alan Kuo, Paul Bowyer, Yudai Matsuda, Stephen Mondo, Ellen K. Lyhne, Martin E. Kogle, Alicia Clum, Anna Lipzen, Asaf Salamov, Chew Yee Ngan, Chris Daum, Jennifer Chiniquy
    Proceedings of the National Academy of Sciences.2018;[Epub]     CrossRef
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    Jens C. Frisvad, Thomas O. Larsen
    Frontiers in Microbiology.2016;[Epub]     CrossRef
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    G.A. Pena, M.P. Monge, M.F. Landa, A.M. Dalcero, C.A.R. Rosa, L.R. Cavaglieri
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    Alena Nováková, Vit Hubka, Zuzana Dudová, Tetsuhiro Matsuzawa, Alena Kubátová, Takashi Yaguchi, Miroslav Kolařík
    Fungal Diversity.2014; 64(1): 253.     CrossRef

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