- Microbial Communities in Semi-consolidated Carbonate Sediments of the Southwest Indian Ridge
-
Jiwei Li , Xiaotong Peng , Huaiyang Zhou , Jiangtao Li , Zhilei Sun , Shun Chen
-
J. Microbiol. 2014;52(2):111-119. Published online February 1, 2014
-
DOI: https://doi.org/10.1007/s12275-014-3133-1
-
-
985
View
-
0
Download
-
15
Crossref
-
 Abstract
 PDF
-
White semi-consolidated carbonate sediments attached to black ferromanganese oxide films were collected approximately 50 km west of a newly discovered hydrothermal field near the Southwest Indian Ridge (SWIR). The biodiversity of the prokaryotic communities within the field was examined using clone library-based culture-independent analysis of the exterior black oxides and the interior white carbonates. Subsequent 16S rRNA gene analysis suggested that Gammaproteobacteria, Acidobacteria, and Thaumarchaeota members dominated the bacterial and archaeal clone libraries. To further characterize the metabolic processes within the microbial community, analyses of the amoA (coding the alpha subunit of the ammonia monooxygenase for Archaea) and aprA (coding the alpha subunit of the dissimilatory adenosine-5'-phosphosulfate reductase for the sulfate-reducing and sulfur-oxidizing prokaryotes) functional genes were conducted. The functional gene analysis results suggested that Thaumarchaeota and Alphaproteobacteria members were the potential players that participated in N and S cycles in this marine carbonate sedimentary environment. This paper is the first to describe the microbial communities and their potential metabolic pathways within the semi-consolidated carbonate sediments of the SWIR.
-
Citations
Citations to this article as recorded by  - Abyssal hydrothermal alteration drives the evolution from simple alkanes to prebiotic molecular complexity
Quanyou Liu, Huiyuan Xu, Jiuyuan Wang, Dongya Zhu, Chi Zhang, Biqing Zhu, Yin Fu, Wang Zhang, Jiangtao Li, Di Zhu, Shili Liao, Chunhui Tao, Guanghui Yuan, Shang Xu, Huaiwei Ni, Fang Hao, Zhijun Jin
Nature Communications.2026;[Epub] CrossRef - An insight into the prokaryotic diversity from a polymetallic nodule-rich region in the Central Indian Ocean Basin using next generation sequencing approach
Shruti Shah, Samir R. Damare, Maria Brenda Luzia Mascarenhas-Pereira, Jayesh Patil, Sneha Parab, Sushil Nair, Arpita Ghosh
Frontiers in Microbiology.2024;[Epub] CrossRef - Biogeography and potential ecological functions of prokaryotes in the hydrothermal and non-hydrothermal field sediments of the Indian Ocean Ridges
Jing Huang, Ping Chen, Yaxin Zhu, Jian Wang, Lei Song, Xiqiu Han, Ying Huang
Frontiers in Marine Science.2023;[Epub] CrossRef - Spatiotemporal dynamics of high and low nucleic acid-content bacterial communities in Chinese coastal seawater: assembly process, co-occurrence relationship and the ecological functions
Wei Hu, Ningning Zheng, Yadi Zhang, Mark Bartlam, Yingying Wang
Frontiers in Microbiology.2023;[Epub] CrossRef - Impact of arsenic on microbial community structure and their metabolic potential from rice soils of West Bengal, India
Himadri Bose, Rajendra Prasad Sahu, Pinaki Sar
Science of The Total Environment.2022; 841: 156486. CrossRef - Microbial diversity and community structure in deep-sea sediments of South Indian Ocean
Daochen Zhu, Sivasamy Sethupathy, Lu Gao, Muhammad Zohaib Nawaz, Weimin Zhang, Jianxiong Jiang, Jianzhong Sun
Environmental Science and Pollution Research.2022; 29(30): 45793. CrossRef - Spatial patterns and co-occurrence networks of microbial communities related to environmental heterogeneity in deep-sea surface sediments around Yap Trench, Western Pacific Ocean
Chenru Zhang, Qian Liu, Xianrong Li, Min Wang, Xiaoshou Liu, Jinpeng Yang, Jishang Xu, Yong Jiang
Science of The Total Environment.2021; 759: 143799. CrossRef - Bacterial and Fungal Diversity in Sediment and Water Column From the Abyssal Regions of the Indian Ocean
Natasha Maria Barnes, Samir R. Damare, Belle Damodara Shenoy
Frontiers in Marine Science.2021;[Epub] CrossRef - High-throughput single-cell cultivation reveals the underexplored rare biosphere in deep-sea sediments along the Southwest Indian Ridge
Beiyu Hu, Bingxue Xu, Juanli Yun, Jian Wang, Bingliang Xie, Caiming Li, Yanghuan Yu, Ying Lan, Yaxin Zhu, Xin Dai, Ying Huang, Li Huang, Jianzhang Pan, Wenbin Du
Lab on a Chip.2020; 20(2): 363. CrossRef - Polyphasic approach revealed complex bacterial community structure and function in deep sea sediment of ultra-slow spreading Southwest Indian Ridge
Rupesh Kumar Sinha, K.P. Krishnan, Femi Anna Thomas, M.B. Binish, Mahesh Mohan, P. John Kurian
Ecological Indicators.2019; 96: 40. CrossRef - Macrofaunal burrowing enhances deep-sea carbonate lithification on the Southwest Indian Ridge
Hengchao Xu, Xiaotong Peng, Shun Chen, Jiwei Li, Shamik Dasgupta, Kaiwen Ta, Mengran Du
Biogeosciences.2018; 15(21): 6387. CrossRef - Lipid Biomarkers Reveal Microbial Communities in Hydrothermal Chimney Structures from the 49.6°E Hydrothermal Vent Field at the Southwest Indian Ocean Ridge
Jijiang Lei, Fengyou Chu, Xiaoguo Yu, Xiaohu Li, Chunhui Tao
Geomicrobiology Journal.2017; 34(6): 557. CrossRef - Fungal communities from the calcareous deep-sea sediments in the Southwest India Ridge revealed by Illumina sequencing technology
Likui Zhang, Manyu Kang, Yangchao Huang, Lixiang Yang
World Journal of Microbiology and Biotechnology.2016;[Epub] CrossRef - Bacterial and archaeal communities in the deep-sea sediments of inactive hydrothermal vents in the Southwest India Ridge
Likui Zhang, Manyu Kang, Jiajun Xu, Jian Xu, Yinjie Shuai, Xiaojian Zhou, Zhihui Yang, Kesen Ma
Scientific Reports.2016;[Epub] CrossRef - Diversity, Biogeography, and Biodegradation Potential of Actinobacteria in the Deep-Sea Sediments along the Southwest Indian Ridge
Ping Chen, Limin Zhang, Xiaoxuan Guo, Xin Dai, Li Liu, Lijun Xi, Jian Wang, Lei Song, Yuezhu Wang, Yaxin Zhu, Li Huang, Ying Huang
Frontiers in Microbiology.2016;[Epub] CrossRef
- Microbial Diversity of a Sulfide Black Smoker in Main Endeavour Hydrothermal Vent Field, Juan de Fuca Ridge
-
Huaiyang Zhou , Jiangtao Li , Xiaotong Peng , Jun Meng , Fengping Wang , Yuncan Ai
-
J. Microbiol. 2009;47(3):235-247. Published online June 26, 2009
-
DOI: https://doi.org/10.1007/s12275-008-0311-z
-
-
910
View
-
0
Download
-
31
Crossref
-
Abstract
PDF
-
Submarine hydrothermal vents are among the least-understood habitats on Earth but have been the intense focus of research in the past 30 years. An active hydrothermal sulfide chimney collected from the Dudley site in the Main Endeavour vent Field (MEF) of Juan de Fuca Ridge was investigated using mineralogical
and molecular approaches. Mineral analysis indicated that the chimney was composed mainly of Fe-, Zn- and Cu-rich sulfides. According to phylogenetic analysis, within the Crenarchaeota, clones of the order Desulfurococcales predominated, comprising nearly 50% of archaeal clones. Euryarchaeota were composed mainly of clones belonging to Thermococcales and deep-sea hydrothermal vent Euryarchaeota (DHVE), each of which accounted for about 20% of all clones. Thermophilic or hyperthermophilic physiologies were common to the predominant archaeal groups. More than half of bacterial clones belonged to ε-Proteobacteria, which confirmed their prevalence in hydrothermal vent environments. Clones of Proteobacteria (γ-, δ-, β-), Cytophaga-Flavobacterium-Bacteroides (CFB) and Deinococcus-Thermus occurred as well. It was remarkable that methanogens and methanotrophs were not detected in our 16S rRNA gene library. Our results indicated that sulfur-related metabolism, which included sulfur-reducing activity carried out by thermophilic archaea and sulfur-oxidizing by mesophilic bacteria, was common and crucial to the vent ecosystem in Dudley hydrothermal site.
-
Citations
Citations to this article as recorded by - The Release of Energy During Protein Synthesis at Ultramafic‐Hosted Submarine Hydrothermal Ecosystems
Jeffrey M. Dick, Everett L. Shock
Journal of Geophysical Research: Biogeosciences.2021;[Epub] CrossRef - Interaction between Microbes, Minerals, and Fluids in Deep-Sea Hydrothermal Systems
Shamik Dasgupta, Xiaotong Peng, Kaiwen Ta
Minerals.2021; 11(12): 1324. CrossRef - Microbial succession during the transition from active to inactive stages of deep-sea hydrothermal vent sulfide chimneys
Jialin Hou, Stefan M. Sievert, Yinzhao Wang, Jeffrey S. Seewald, Vengadesh Perumal Natarajan, Fengping Wang, Xiang Xiao
Microbiome.2020;[Epub] CrossRef - Thermoplasmatales and sulfur-oxidizing bacteria dominate the microbial community at the surface water of a CO2-rich hydrothermal spring located in Tenorio Volcano National Park, Costa Rica
Alejandro Arce-Rodríguez, Fernando Puente-Sánchez, Roberto Avendaño, María Martínez-Cruz, J. Maarten de Moor, Dietmar H. Pieper, Max Chavarría
Extremophiles.2019; 23(2): 177. CrossRef - Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys
Petra Pjevac, Dimitri V. Meier, Stephanie Markert, Christian Hentschker, Thomas Schweder, Dörte Becher, Harald R. Gruber-Vodicka, Michael Richter, Wolfgang Bach, Rudolf Amann, Anke Meyerdierks
Frontiers in Microbiology.2018;[Epub] CrossRef - Colonization of Black Smokers by Hyperthermophilic Microorganisms
Reinhard Wirth
Trends in Microbiology.2017; 25(2): 92. CrossRef - In‐situ incubation of iron‐sulfur mineral reveals a diverse chemolithoautotrophic community and a new biogeochemical role for Thiomicrospira
Roman A. Barco, Colleen L. Hoffman, Gustavo A. Ramírez, Brandy M. Toner, Katrina J. Edwards, Jason B. Sylvan
Environmental Microbiology.2017; 19(3): 1322. CrossRef - Oxidative Weathering and Microbial Diversity of an Inactive Seafloor Hydrothermal Sulfide Chimney
Jiangtao Li, Jiamei Cui, Qunhui Yang, Guojie Cui, Bingbing Wei, Zijun Wu, Yong Wang, Huaiyang Zhou
Frontiers in Microbiology.2017;[Epub] CrossRef - Deep sequencing analysis of bacterial community structure of Soldhar hot spring, India
A. Sharma, D. Paul, D. Dhotre, K. Jani, A. Pandey, Y. S. Shouche
Microbiology.2017; 86(1): 136. CrossRef - Linkages between mineralogy, fluid chemistry, and microbial communities within hydrothermal chimneys from the Endeavour Segment, Juan de Fuca Ridge
T. J. Lin, H. C. Ver Eecke, E. A. Breves, M. D. Dyar, J. W. Jamieson, M. D. Hannington, H. Dahle, J. L. Bishop, M. D. Lane, D. A. Butterfield, D. S. Kelley, M. D. Lilley, J. A. Baross, J. F. Holden
Geochemistry, Geophysics, Geosystems.2016; 17(2): 300. CrossRef - Microbial Distribution in a Hydrothermal Plume of the Southwest Indian Ridge
Jiangtao Li, Huaiyang Zhou, Jiasong Fang, Zijun Wu, Xiaotong Peng
Geomicrobiology Journal.2016; 33(5): 401. CrossRef - Bacterial and archaeal communities in the deep-sea sediments of inactive hydrothermal vents in the Southwest India Ridge
Likui Zhang, Manyu Kang, Jiajun Xu, Jian Xu, Yinjie Shuai, Xiaojian Zhou, Zhihui Yang, Kesen Ma
Scientific Reports.2016;[Epub] CrossRef - Bacterial diversity and successional patterns during biofilm formation on freshly exposed basalt surfaces at diffuse-flow deep-sea vents
Lara K. Gulmann, Stace E. Beaulieu, Timothy M. Shank, Kang Ding, William E. Seyfried, Stefan M. Sievert
Frontiers in Microbiology.2015;[Epub] CrossRef - Characteristics of the cultivable bacteria from sediments associated with two deep-sea hydrothermal vents in Okinawa Trough
Qing-lei Sun, Ming-qing Wang, Li Sun
World Journal of Microbiology and Biotechnology.2015; 31(12): 2025. CrossRef - Assessing the global phylum level diversity within the bacterial domain: A review
Noha H. Youssef, M.B. Couger, Alexandra L. McCully, Andrés Eduardo Guerrero Criado, Mostafa S. Elshahed
Journal of Advanced Research.2015; 6(3): 269. CrossRef - Microbial distribution in different spatial positions within the walls of a black sulfide hydrothermal chimney
J Li, H Zhou, J Fang, Y Sun, S Dasgupta
Marine Ecology Progress Series.2014; 508: 67. CrossRef - Composition and variation of sediment bacterial and nirS-harboring bacterial communities at representative sites of the Bohai Gulf coastal zone, China
Xiangyu Guan, Lingling Zhu, Youxun Li, Yuxuan Xie, Mingzhang Zhao, Ximing Luo
World Journal of Microbiology and Biotechnology.2014; 30(4): 1291. CrossRef - Magnetite formation from ferrihydrite by hyperthermophilic archaea from Endeavour Segment, Juan de Fuca Ridge hydrothermal vent chimneys
T. Jennifer Lin, E. A. Breves, M. D. Dyar, H. C. Ver Eecke, J. W. Jamieson, J. F. Holden
Geobiology.2014; 12(3): 200. CrossRef - Modeling microbial reaction rates in a submarine hydrothermal vent chimney wall
Douglas E. LaRowe, Andrew W. Dale, David R. Aguilera, Ivan L’Heureux, Jan P. Amend, Pierre Regnier
Geochimica et Cosmochimica Acta.2014; 124: 72. CrossRef - Assessing the influence of physical, geochemical and biological factors on anaerobic microbial primary productivity within hydrothermal vent chimneys
H. C. Olins, D. R. Rogers, K. L. Frank, C. Vidoudez, P. R. Girguis
Geobiology.2013; 11(3): 279. CrossRef - Evolutionary Dynamics of the Prokaryotic Adaptive Immunity System CRISPR-Cas in an Explicit Ecological Context
Jaime Iranzo, Alexander E. Lobkovsky, Yuri I. Wolf, Eugene V. Koonin
Journal of Bacteriology.2013; 195(17): 3834. CrossRef - Free‐living bacterial communities associated with tubeworm (Ridgeia piscesae) aggregations in contrasting diffuse flow hydrothermal vent habitats at the Main Endeavour Field, Juan de Fuca Ridge
Nathalie L. Forget, S. Kim Juniper
MicrobiologyOpen.2013; 2(2): 259. CrossRef - In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes
Laura C. Bohorquez, Luisa Delgado-Serrano, Gina López, César Osorio-Forero, Vanja Klepac-Ceraj, Roberto Kolter, Howard Junca, Sandra Baena, María Mercedes Zambrano
Microbial Ecology.2012; 63(1): 103. CrossRef - Life and Death of Deep-Sea Vents: Bacterial Diversity and Ecosystem Succession on Inactive Hydrothermal Sulfides
Jason B. Sylvan, Brandy M. Toner, Katrina J. Edwards, Mary Ann Moran
mBio.2012;[Epub] CrossRef - Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents
Helene C. Ver Eecke, David A. Butterfield, Julie A. Huber, Marvin D. Lilley, Eric J. Olson, Kevin K. Roe, Leigh J. Evans, Alexandr Y. Merkel, Holly V. Cantin, James F. Holden
Proceedings of the National Academy of Sciences.2012; 109(34): 13674. CrossRef - Inter‐field variability in the microbial communities of hydrothermal vent deposits from a back‐arc basin
G. E. FLORES, M. SHAKYA, J. MENEGHIN, Z. K. YANG, J. S. SEEWALD, C. GEOFF WHEAT, M. PODAR, A.‐L. REYSENBACH
Geobiology.2012; 10(4): 333. CrossRef - Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1T) from a deep-sea hydrothermal vent chimney
Alex Copeland, Wei Gu, Montri Yasawong, Alla Lapidus, Susan Lucas, Shweta Deshpande, Ioanna Pagani, Roxanne Tapia, Jan-Fang Cheng, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pa
Standards in Genomic Sciences.2012; 6(1): 21. CrossRef - The Biological Deep Sea Hydrothermal Vent as a Model to Study Carbon Dioxide Capturing Enzymes
Zoran Minic, Premila D. Thongbam
Marine Drugs.2011; 9(5): 719. CrossRef - In situ enrichment of ocean crust microbes on igneous minerals and glasses using an osmotic flow-through device
Amy Smith, Radu Popa, Martin Fisk, Mark Nielsen, C. Geoffrey Wheat, Hans W. Jannasch, Andrew T. Fisher, Keir Becker, Stefan M. Sievert, Gilberto Flores
Geochemistry, Geophysics, Geosystems.2011; 12(6): n/a. CrossRef - Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid‐Atlantic Ridge
Gilberto E. Flores, James H. Campbell, Julie D. Kirshtein, Jennifer Meneghin, Mircea Podar, Joshua I. Steinberg, Jeffrey S. Seewald, Margaret Kingston Tivey, Mary A. Voytek, Zamin K. Yang, Anna‐Louise Reysenbach
Environmental Microbiology.2011; 13(8): 2158. CrossRef - Microscopy study of biologically mediated alteration of natural mid‐oceanic ridge basalts and magnetic implications
Julie Carlut, Karim Benzerara, Hélène Horen, Nicolas Menguy, Dominique Janots, Nathaniel Findling, Amhed Addad, Imène Machouk
Journal of Geophysical Research: Biogeosciences.2010;[Epub] CrossRef
|
MSK
