- Arthrobacter dokdonellae sp. nov., isolated from a plant of the genus Campanula
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Hyeon-Woo Koh , Myung-Suk Kang , Ki-Eun Lee , Eun-Young Lee , Hongik Kim , Soo-Je Park
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J. Microbiol. 2019;57(9):732-737. Published online May 11, 2019
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DOI: https://doi.org/10.1007/s12275-019-8540-x
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A Gram-stain-positive, oxidase- and catalase-positive, motile,
aerobic, and rod-shaped bacterial strain, designated as
DCT-5T, was isolated from a native plant belonging to the genus
Campanula at Dokdo island, Republic of Korea. Growth
of the strain DCT-5T was observed at 15–37°C (optimum
30°C) on R2A broth, pH 6.0–8.0 (optimum 7.0), and 0–5%
(w/v) NaCl concentration (optimum 0%). The 16S rRNA gene
sequence analysis revealed that strain DCT-5T was most closely
related to Arthrobacter silviterrae KIS14-16T, Arthrobacter
livingstonensis LI2T, Arthrobacter stackebrandtii CCM
2783T, Arthrobacter cryoconiti Cr6-08T, Arthrobacter ramosus
CCM 1646T, and Arthrobacter psychrochitiniphilus GP3T with
pairwise sequence similarities of 98.76%, 97.47%, 97.25%,
97.11%, 97.11%, and 97.00%, respectively. The DNA G+C
content of strain DCT-5T was 64.7 mol%, and its DNA–DNA
relatedness values with A. silviterrae KIS14-16T, A. livingstonensis
LI2T, A. stackebrandtii CCM 2783T, A. psychrochitiniphilus
GP3T, A. ramosus CCM 1646T, and A. cryoconiti
Cr6-08T were 32.57 ± 2.02%, 28.75 ± 0.88%, 31.93 ± 1.15%,
34.73 ± 1.86%, 29.12 ± 1.56%, and 27.23 ± 0.88%, respectively.
The major quinone was MK-9(H2) and major fatty acids were
anteiso-C15:0, anteiso-C17:0, iso-C15:0, and iso-C16:0. The polar
lipids were diphosphatidylglycerol (DPG), phosphatidylglycerol
(PG), phosphatidylinositol (PI), unidentified glycolipid
(GL), two unidentified aminophospholipids (APLs), and three
unidentified lipids (Ls). The peptidoglycan type was A3α.
On the basis of phenotypic, phylogenetic, genotypic, and chemotaxonomic
characteristics, strain DCT-5T represents a
novel species of the genus Arthrobacter, for which the name
Arthrobacter dokdonellae sp. nov. is proposed. The type strain
is DCT-5T (= KCTC 49189T = LMG 31284T).
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Citations
Citations to this article as recorded by  - Biodegradation of dimethachlon by Arthrobacter sp. K5: Mechanistic insights and ecological implications
Zhenyu Qian, Yingpei Wang, Peicheng Lu, Minghui Wu, Haipeng Xie, Xiangyi Kong, Xiaoyan Wu, Shunli Hu
Journal of Environmental Chemical Engineering.2024; 12(6): 114473. CrossRef - Microbial adaptation to different environmental conditions: molecular perspective of evolved genetic and cellular systems
Atif Khurshid Wani, Nahid Akhtar, Farooq Sher, Acacio Aparecido Navarrete, Juliana Heloisa Pinê Américo-Pinheiro
Archives of Microbiology.2022;[Epub] CrossRef -
Arthrobacter sunyaminii sp. nov. and Arthrobacter jiangjiafuii sp. nov., new members in the genus Arthrobacter
Gui Zhang, Jing Yang, Dong Jin, Xin-He Lai, Shan Lu, Zhihong Ren, Tian Qin, Liyun Liu, Ji Pu, Yue Liu, Lin Ye, Juan Zhou, Xianglian Lv, Yuanmeihui Tao, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions
Sara Gushgari-Doyle, Lauren M Lui, Torben N Nielsen, Xiaoqin Wu, Ria G Malana, Andrew J Hendrickson, Heloise Carion, Farris L Poole, Michael W W Adams, Adam P Arkin, Romy Chakraborty
ISME Communications.2022;[Epub] CrossRef
- [Retraction Note] Interferon-mediated antiviral activities of Angelica tenuissima Nakai and its active components
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Prasanna Weeratunga , Md Bashir Uddin , Myun Soo Kim , Byeong-Hoon Lee , Tae-Hwan Kim , Ji-Eun Yoon , Jin Yeul Ma , Hongik Kim , Jong-Soo Lee
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J. Microbiol. 2018;56(9):690-690.
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DOI: https://doi.org/10.1007/s12275-018-0579-6
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The above article by Weeratunga et al. has been retracted from Journal of Microbiology at the request of the corresponding
author. The authors found that they were unable to reproduce Figure 1, Figure 3(A), Figure 4(A) and Figure 7(D) presented in
this paper. All of the authors agreed to this retraction. The authors regret any inconvenience that this may cause and apologize
sincerely to the readers, reviewers, and editors of Journal of Microbiology.
- Interferon-mediated antiviral activities of Angelica tenuissima Nakai and its active components
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Prasanna Weeratunga , Md Bashir Uddin , Myun Soo Kim , Byeong-Hoon Lee , Tae-Hwan Kim , Ji-Eun Yoon , Jin Yeul Ma , Hongik Kim , Jong-Soo Lee
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J. Microbiol. 2016;54(1):57-70. Published online January 5, 2016
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DOI: https://doi.org/10.1007/s12275-016-5555-4
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360
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Angelica tenuissima Nakai is a widely used commodity in
traditional medicine. Nevertheless, no study has been conducted
on the antiviral and immune-modulatory properties
of an aqueous extract of Angelica tenuissima Nakai. In the
present study, we evaluated the antiviral activities and the
mechanism of action of an aqueous extract of Angelica tenuissima
Nakai both in vitro and in vivo. In vitro, an effective
dose of Angelica tenuissima Nakai markedly inhibited the
replication of Influenza A virus (PR8), Vesicular stomatitis
virus (VSV), Herpes simplex virus (HSV), Coxsackie virus,
and Enterovirus (EV-71) on epithelial (HEK293T/HeLa) and
immune (RAW264.7) cells. Such inhibition can be described
by the induction of the antiviral state in cells by antiviral, IFNrelated
gene induction and secretion of IFNs and pro-inflammatory
cytokines. In vivo, Angelica tenuissima Nakai
treated BALB/c mice displayed higher survivability and lower
lung viral titers when challenged with lethal doses of highly
pathogenic influenza A subtypes (H1N1, H5N2, H7N3, and
H9N2). We also found that Angelica tenuissima Nakai can
induce the secretion of IL-6, IFN-λ, and local IgA in bronchoalveolar
lavage fluid (BALF) of Angelica tenuissima Nakai
treated mice, which correlating with the observed prophylactic
effects. In HPLC analysis, we found the presence of several
compounds in the aqueous fraction and among them; we
evaluated antiviral properties of ferulic acid. Therefore, an
extract of Angelica tenuissima Nakai and its components,
including ferulic acid, play roles as immunomodulators and
may be potential candidates for novel anti-viral/anti-influenza
agents.
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Citations
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Won-Jong Park, Youn Ho Han
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Chang-Woo Ha, Eun-Hwa Sohn, Sung-Hyeok Kim, Sohee Jang, Myung-Rye Park, Youn-Kyu Kim, In-Young Bae
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Journal of Microbiology.2016; 54(12): 853. CrossRef
- NOTE] Evaluation of a Fosmid-Clone-Based Microarray for Comparative Analysis of Swine Fecal Metagenomes
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Soo-Je Park , Dong-Hwan Kim , Man-Young Jung , So-Jeong Kim , Hongik Kim , Yang-Hoon Kim , Jong-Chan Chae , Sung-Keun Rhee
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J. Microbiol. 2012;50(4):684-688. Published online July 21, 2012
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DOI: https://doi.org/10.1007/s12275-012-2115-4
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Glass slide arrayed with fosmid clone DNAs generated from swine feces as probes were fabricated and used as a metagenome microarray (MGA). MGA appeared to be specific to their corresponding target genomic fragments. The detection limit was 10 ng of genomic DNA (ca. 106 bacterial cells) in the presence of 1000 ng of background DNA. Linear relationships between the signal intensity and the target DNA (20–100 ng) were observed (r2=0.98). Application of MGA to the comparison of swine fecal metagenomes suggested that the microbial community composition of swine intestine could be dependent on the health state of swine.
- ERRATUM] Bacillus gaemokensis sp. nov., Isolated from Foreshore Tidal Flat Sediment from the Yellow Sea
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Min-Young Jung , Woon Kee Paek , In-Soon Park , Jeong-Ran Han , Yeseul Sin , Jayoung Paek , Moon-Soo Rhee , Hongik Kim , Hong Seok Song , Young-Hyo Chang
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J. Microbiol. 2012;50(3):553-553.
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Abstract
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In the article by Jung et al. that appears in the Journal of Microbiology 2010; 48, 867-871. Page 867, the information of 6th author, Jayoung Paek, should read as below.
- ERRATUM] Bacillus gaemokensis sp. nov., Isolated from Foreshore Tidal Flat Sediment
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Min-Young Jung , Woon Kee Paek , In-Soon Park , Jeong-Ran Han , Yeseul Sin , Jayoung Paek , Moon-Soo Rhee , Hongik Kim , Hong Seok Song , Young-Hyo Chang
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J. Microbiol. 2011;49(1):169-169.
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Abstract
PDF
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In the article by Jung et al. that appears in the Journal of Microbiology 2010; 48, 876-871. Page 867 first author name Min-Young Jung should be changed as Min Young Jung.
- NOTE] Bacillus gaemokensis sp. nov., Isolated from Foreshore Tidal Flat Sediment from the Yellow Sea
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Min-Young Jung , Woon Kee Paek , In-Soon Park , Jeong-Ran Han , Yeseul Sin , Jayoung Paek , Moon-Soo Rhee , Hongik Kim , Hong Seok Song , Young-Hyo Chang
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J. Microbiol. 2010;48(6):867-871. Published online January 9, 2011
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DOI: https://doi.org/10.1007/s12275-010-0148-0
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310
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A Gram-positive, rod-shaped, endospore-forming organism, strain BL3-6T, was isolated from tidal flat sediments of the Yellow Sea in the region of Tae-An. A 16S rRNA gene sequence analysis demonstrated that this isolate belongs to the Bacillus cereus group, and is closely related to Bacillus mycoides (99.0% similarity), Bacillus thuringiensis (99.0%), Bacillus weihenstephanensis (99.0%), Bacillus cereus (98.9%), Bacillus anthracis (98.8%), and Bacillus pseudomycoides (98.1%). The phylogenetic distance from any validly described Bacillus species outside the Bacillus cereus group was less than 95.6%. The DNA G+C content of the strain was 39.4 mol% and the major respiratory quinone was menaquinone-7. The major cellular fatty acids were iso-C14:0 (17.8%), iso-C16:0 (15.8%), and iso-C12:0 (11.3%). The diagnostic amino acid of the cell wall was mesodiaminopimelic acid and the major cell wall sugar was galactose. The results of DNA-DNA hybridization (<55.6%) and physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain BL3-6T from the published Bacillus species. BL3-6T therefore represents a new species, for which the name Bacillus gaemokensis sp. nov. is proposed, with the type strain BL3-6T (=KCTC 13318T =JCM 15801T).
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