- Terrabacter ginsengisoli sp. nov., isolated from ginseng cultivating soil
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Mei-Fang Jin , Xiao-Tian Quan , Muhammad Zubair Siddiqi , Qing-Zhen Liu , Hong-Shan Yu , Wan-Taek Im
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J. Microbiol. 2018;56(5):331-336. Published online May 2, 2018
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DOI: https://doi.org/10.1007/s12275-018-8098-z
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 Abstract
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A Gram-positive, strictly aerobic, nonmotile, yellowish, coccus-
rod-shaped bacterium (designated Gsoil 653T) isolated
from ginseng cultivating soil was characterized using a polyphasic
approach to clarify its taxonomic position. The strain
Gsoil 653T exhibited optimal growth at pH 7.0 on R2A agar
medium at 30°C. Phylogenetic analysis based on 16S rRNA
gene sequence similarities, indicated that Gsoil 653T belongs
to the genus Terrabacter of the family Humibacillus, and was
closely related to Terrabacter tumescens DSM 20308T (98.9%),
Terrabacter carboxydivorans PY2T (98.9%), Terrabacter terrigena
ON10T (98.8%), Terrabacter terrae PPLBT (98.6%), and
Terrabacter lapilli LR-26T (98.6%). The DNA G + C content
was 70.5 mol%. The major quinone was MK-8(H4). The primary
polar lipids were phosphatidylglycerol, diphosphatidylglycerol,
phosphatidyl-ethanolamine. The predominant
fatty acids were iso-C15:0, iso-C16:0, iso-C14:0, and anteiso-C15:0,
as in the case of genus Terrabacter, thereby supporting the
categorization of strain Gsoil 653T. However, the DNA-DNA
relatedness between Gsoil 653T and closely related strains of
Terrabacter species was low at less than 31%. Moreover, strain
Gsoil 653T could be both genotypically and phenotypically distinguished
from the recognized species of the genus Terrabacter.
This isolate, therefore, represents a novel species, for
which the name Terrabacter ginsengisoli sp. nov. is proposed
with the type strain Gsoil 653T (= KACC 19444T = LMG
30325T).
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Citations
Citations to this article as recorded by  - Phosphorus fertilizer application and tillage practices influence bacterial community composition: implication for soil health
R.A. Adeleke, C. C. Obieze, C. Mukoro, C. B. Chikere, S. Tsipinana, A. Nciizah
Archives of Agronomy and Soil Science.2023; 69(5): 803. CrossRef - Ecofriendly Synthesis of Silver Nanoparticles by Terrabacter humi sp. nov. and Their Antibacterial Application against Antibiotic-Resistant Pathogens
Shahina Akter, Sun-Young Lee, Muhammad Zubair Siddiqi, Sri Renukadevi Balusamy, Md. Ashrafudoulla, Esrat Jahan Rupa, Md. Amdadul Huq
International Journal of Molecular Sciences.2020; 21(24): 9746. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(5): 1247. CrossRef
- Baekduia soli gen. nov., sp. nov., a novel bacterium isolated from the soil of Baekdu Mountain and proposal of a novel family name, Baekduiaceae fam. nov.
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Dong-Shan An , Muhammad Zubair Siddiqi , Kyoung-Ho Kim , Hong-Shan Yu , Wan-Taek Im
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J. Microbiol. 2018;56(1):24-29. Published online January 4, 2018
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DOI: https://doi.org/10.1007/s12275-018-7107-6
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1,040
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A taxonomic study was conducted on BR7-21T, a bacterial
strain isolated from the soil of a ginseng field in Baekdu
Mountain. Comparative studies of the 16S rRNA gene sequence
showed that the isolate was most closely related to
Conexibacter woesei DSM 14684T, Solirubrobacter pauli ATCC
BAA-492T, Patulibacter minatonensis JCM 12834T, with 93.8%,
92.4%, and 91.5% sequence similarity, respectively; each genus
represented a family in the order Solirubrobacterales. Strain
BR7-21T was Gram-reaction positive, non-spore forming,
aerobic, non-motile, and short rod-shaped. It grew well on
half-strength R2A medium. The G + C content of the genomic
DNA was 73.9%. It contained meso-diaminopimelic acid in
the cell wall and the major menaquinones were MK-7(H4)
and MK-8(H4). The major fatty acids were summarized as
(C16:1 ω7c/iso-C15:0 2-OH), iso-C16:0, and C17:0 cyclo. On the
basis of polyphasic evidence, it was proposed that strain BR7-
21T should be placed in a new genus and species, for which
the name Baekduia soli gen. nov., sp. nov. was proposed with
the type strain BR7-21T (= KCTC 22257T = LMG 24797T). The
family Baekduiaceae fam. nov. is proposed to encompass
the genus Baekduia gen. nov.
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Citations
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Selma Vieira, Katharina J. Huber, Alicia Geppert, Jacqueline Wolf, Meina Neumann-Schaal, Mathias Müsken, Jörg Overmann
International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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Nakian Kim, Chance W. Riggins, María C. Zabaloy, Marco Allegrini, Sandra L. Rodriguez-Zas, María B. Villamil
Agronomy.2022; 12(4): 954. CrossRef -
Capillimicrobium parvum gen. nov., sp. nov., a novel representative of Capillimicrobiaceae fam. nov. within the order Solirubrobacterales, isolated from a grassland soil
Selma Vieira, Katharina J. Huber, Alicia Geppert, Jacqueline Wolf, Meina Neumann-Schaal, Manja Luckner, Gerhard Wanner, Mathias Müsken, Jörg Overmann
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(5): 1247. CrossRef
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