- Comparative Genomic Analysis of Bacteriophage EP23 Infecting Shigella sonnei and Escherichia coli
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Ho-Won Chang , Kyoung-Ho Kim
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J. Microbiol. 2011;49(6):927-934. Published online December 28, 2011
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DOI: https://doi.org/10.1007/s12275-011-1577-0
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Bacteriophage EP23 that infects Escherichia coli and Shigella sonnei was isolated and characterized. The bacteriophage morphology was similar to members of the family Siphoviridae. The 44,077 bp genome was fully sequenced using 454 pyrosequencing. Comparative genomic and phylogenetic analyses showed that EP23 was most closely related to phage SO-1, which infects Sodalis glossinidius and phage SSL-2009a, which infects engineered E. coli. Genomic comparison indicated that EP23 and SO-1 were very similar with each other in terms of gene order and amino acid similarity, even though their hosts were separated in the level of genus. EP23 and SSL-2009a displayed high amino acid similarity between their genes, but there was evidence of several recombination events in SSL-2009a. The results of the comparative genomic analyses further the understanding of the evolution and relationship between EP23 and its bacteriophage relatives.
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Bacteriophage.2013; 3(1): e25098. CrossRef
- Phenotypic Characterization and Genomic Analysis of the Shigella sonnei Bacteriophage SP18
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Kyoung-Ho Kim , Ho-Won Chang , Young-Do Nam , Seong Woon Roh , Jin-Woo Bae
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J. Microbiol. 2010;48(2):213-222. Published online May 1, 2010
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DOI: https://doi.org/10.1007/s12275-010-0055-4
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816
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A novel bacteriophage that infects Shigella sonnei was isolated from the Gap River in Korea, and its phenotypic and genomic characteristics were investigated. The virus, called SP18, showed morphology characteristic of the family Myoviridae, and phylogenetic analysis of major capsid gene (gp23) sequences classified it as a T4-like phage. Based on host spectrum analysis, it is lytic to S. sonnei, but not to Shigella flexneri, Shigella boydii or members of the genera Escherichia and Salmonella. Pyrosequencing of the SP18 bacteriophage genome revealed a 170-kb length sequence. In total, 286 ORFs and 3 tRNA genes were identified, and 259 ORFs showed similarity (BLASTP e-value<0.001) to genes of other bacteriophages. The results from comparative genomic analysis indicated that the enterophage JS98, isolated from human stool, is the closest relative of SP18. Based on phylogenetic analysis of gp23 protein-coding sequences, dot plot comparison and BLASTP analysis of genomes, SP18 and JS98 appear to be closely related to T4-even phages. However, several insertions, deletions, and duplications indicate differences between SP18 and JS98. Comparison of duplicated gp24 genes and the soc gene showed that duplication events are responsible for the differentiation and evolution of T4-like bacteriophages.
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Lawrence D. Goodridge
Bacteriophage.2013; 3(1): e25098. CrossRef - Comparative genomic analysis of bacteriophage EP23 infecting Shigella sonnei and Escherichia coli
Ho-Won Chang, Kyoung-Ho Kim
The Journal of Microbiology.2011; 49(6): 927. CrossRef
- Application of Quantitative Real-Time PCR for Enumeration of Total Bacterial, Archaeal, and Yeast Populations in Kimchi
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Eun-Jin Park , Ho-Won Chang , Kyoung-Ho Kim , Young-Do Nam , Seong Woon Roh , Jin-Woo Bae
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J. Microbiol. 2009;47(6):682-685. Published online February 4, 2010
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DOI: https://doi.org/10.1007/s12275-009-0297-1
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764
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Kimchi is a Korean traditional fermented food made of brined vegetables, with a variety of spices. Various microorganisms are associated with the kimchi fermentation process. This study was undertaken in order to apply quantitative real-time PCR targeting the 16S and 26S rRNA genes for the investigation of dynamics of bacterial, archaeal, and yeast communities during fermentation of various types of kimchi. Although the total bacterial and archaeal rRNA gene copy numbers increased during kimchi fermentation, the number of yeasts was not significantly altered. In 1 ng of bulk DNA, the mean number of rRNA gene copies for all strains of bacteria was 5.45×106 which was 360 and 50 times greater than those for archaea and yeast, respectively. The total gene copy number for each group of microorganisms differed among the different types of kimchi, although the relative ratios among them were similar. The common dominance of bacteria in the whole microbial communities of various types of kimchi suggests that bacteria play a principal role in the kimchi fermentation process.
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- Henriciella marina gen. nov., sp. nov., a Novel Member of the Family Hyphomonadaceae Isolated from the East Sea
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Zhe-Xue Quan , Dan-Ning Zeng , Yi-Ping Xiao , Seong Woon Roh , Young-Do Nam , Ho-Won Chang , Jung-Hoon Yoon , Hee-Mock Oh , Jin-Woo Bae
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J. Microbiol. 2009;47(2):156-161. Published online May 2, 2009
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DOI: https://doi.org/10.1007/s12275-008-0290-0
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897
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A bacterial strain, designated Iso4T, was isolated from the East Sea of Korea and was subjected to a polyphasic taxonomy study including phenotypic and chemotaxonomic characteristics as well as 16S rRNA gene sequence analysis. Cells of the strain were Gram-negative, motile, non-budding, non-stalked, and strictly aerobic. Strain Iso4T grew optimally at 20°C in the presence of 1~2% (w/v) NaCl and at pH 6.9~7.6. The major respiratory quinone was Q-10 and the major cellular fatty acids were C18:1 ω7c (53.5%), C17:1 ω5c (11.7%), C17:1 ω6c (8.1%), C16:0 (7.8%), C17:0 (4.8%), C15:0 (2.9%), and C16:1 ω5c (2.2%). The DNA G+C content of strain Iso4T was 56.2 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain Iso4T formed a monophyletic clade in the family Hyphomonadaceae, supported by high bootstrap value and was most closely related to the genus Hyphomonas (92~94%), a member of marine bacteria in the family. The phenotypic, genotypic, and chemotaxonomic evidences also suggest strain Iso4T represents a novel genus and species in the family Hyphomonadaceae, for which the name Henriciella gen. nov., sp. nov. is proposed. The type strain is Iso4T (=KCTC 12513T =DSM 19595T =JCM 15116T).
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Xi-Ying Zhang, Guo-Wei Li, Chun-Sheng Wang, Yan-Jiao Zhang, Xue-Wei Xu, Hai Li, Ang Liu, Chang Liu, Bin-Bin Xie, Qi-Long Qin, Zhong Xu, Xiu-Lan Chen, Bai-Cheng Zhou, Yu-Zhong Zhang
International Journal of Systematic and Evolutionary Microbiology
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- Aliihoeflea aestuarii gen. nov., sp. nov., a Novel Bacterium Isolated from Tidal Flat Sediment
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Seong Woon Roh , Kyoung-Ho Kim , Young-Do Nam , Ho-Won Chang , Min-Soo Kim , Kee-Sun Shin , Jung-Hoon Yoon , Hee-Mock Oh , Jin-Woo Bae
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J. Microbiol. 2008;46(5):594-598. Published online October 31, 2008
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DOI: https://doi.org/10.1007/s12275-008-0196-x
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Abstract
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A novel Gram-negative and rod-shaped bacterium, designated N8T, was isolated from tidal flat sediment. Phylogenetic analysis based on 16S rRNA gene sequences showed that N8T strain is associated with the family Phyllobacteriaceae: two uncultured clones (98.4 and 99.8% 16S rRNA gene sequence similarity) and the genus Mesorhizobium (≤97.0%). The novel strain formed a separate clade with uncultured clones in the phylogenetic tree based on 16S rRNA gene sequences. Cellular fatty acid profiles predominately comprised C18:1 ω7c and C19:0 cyclo ω8c. The major isoprenoid quinone is ubiquinone-10 and genomic DNA G+C content is 53.4 mol%. The polyphasic taxonomic study indicates that the novel strain N8T represents a novel species of the new genus in the family Phyllobacteriaceae, named Aliihoeflea aestuarii. The type strain is N8T (= KCTC 22052T= JCM 15118T= DSM 19536T).
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- Luteimonas aestuarii sp. nov., Isolated from Tidal Flat Sediment
-
Seong Woon Roh , Kyoung-Ho Kim , Young-Do Nam , Ho-Won Chang , Min-Soo Kim , Jung-Hoon Yoon , Hee-Mock Oh , Jin-Woo Bae
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J. Microbiol. 2008;46(5):525-529. Published online October 31, 2008
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DOI: https://doi.org/10.1007/s12275-008-0189-9
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A novel bacterium B9T was isolated from tidal flat sediment. Its morphology, physiology, biochemical features, and 16S rRNA gene sequence were characterized. Colonies of this strain are yellow and the cells are Gram-negative, rod-shaped, and do not require NaCl for growth. The 16S rRNA gene sequence similarity indicated that strain B9T is associated with the genus Lysobacter (≤ 97.2%), Xanthomonas (≤ 96.8%), Pseudomonas (≤ 96.7%), and Luteimonas (≤ 96.0%). However, within the phylogenetic tree, this novel strain shares a branching point with the species Luteimonas composti CC-YY255T (96.0%). The DNA-DNA hybridization experiments showed a DNA-DNA homology of 23.0% between strain B9T and Luteimonas mephitis B1953/27.1T. The G+C content of genomic DNA of the type strain is 64.7 mol% (SD, 1.1). The predominant fatty acids are iso-C11:0, iso-C15:0, iso-C16:0, iso-C17:0, iso-C17:1 ω9c, and iso-C11:0 3-OH. Combined analysis
of the 16S rRNA gene sequences, fatty acid profile, and results from physiological and biochemical tests indicated that there is genotypic and phenotypic differentiation of the isolate from other Luteimonas species. For these reasons, strain B9T was proposed as a novel species, named Luteimonas aestuarii. The type strain of the new species is B9T (= KCTC 22048T, DSM 19680T).
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- Bacterial, Archaeal, and Eukaryal Diversity in the Intestines of Korean People
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J. Microbiol. 2008;46(5):491-501. Published online October 31, 2008
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DOI: https://doi.org/10.1007/s12275-008-0199-7
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The bacterial, archaeal, and eukaryal diversity in fecal samples from ten Koreans were analyzed and compared by using the PCR-fingerprinting method, denaturing gradient gel electrophoresis (DGGE). The bacteria all belonged to the Firmicutes and Bacteroidetes phyla, which were known to be the dominant bacterial species in the human intestine. Most of the archaeal sequences belonged to the methane-producing archaea but several halophilic archarea-related sequences were also detected unexpectedly. While a small number of eukaryal sequences were also detected upon DGGE analysis, these sequences were related to fungi and stramenopiles (Blastocystis hominis). With regard to the bacterial and archaeal DGGE analysis, all ten samples had one and two prominent bands, respectively, but many individual-specific bands were also observed. However, only five of the ten samples had small eukaryal DGGE bands and none of these bands was observed in all five samples. Unweighted pair group method and arithmetic averages clustering algorithm (UPGMA) clustering analysis revealed that the archaeal and bacterial communities in the ten samples had relatively higher relatedness (the average Dice coefficient values were 68.9 and 59.2% for archaea and bacteria, respectively) but the eukaryal community showed low relatedness (39.6%).
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Young-Do Nam , Youlboong Sung , Ho-Won Chang , Seong Woon Roh , Kyoung-Ho Kim , Sung-Keun Rhee , Jung-Chan Kim , Joo-Yong Kim , Jung-Hoon Yoon , Jin-Woo Bae
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J. Microbiol. 2008;46(2):125-136. Published online June 11, 2008
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DOI: https://doi.org/10.1007/s12275-007-0189-1
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The undisturbed sediment of Lake Hovsgol (Mongolia) is scientifically important because it represents a record of the environmental changes that took place between the Holocene (the present age) and Pleistocene (the last ice age; 12,000 14C years before present day). Here, we investigated how the current microbial
<br>communities change as the depth increases by PCR-denaturing gradient gel electrophoresis (DGGE) analysis of the 16S rRNA genes of the microbial communities. The microbial diversity, as estimated by the Shannon index, decreased as the depth increased. In particular, significant changes in archaeal diversity were observed in the middle depth (at 39~42 cm depth of total 60 cm depth) that marks the border between the Holocene and Pleistocene. Phylotype belonging to Beta- and Gamma-Proteobacteria were the predominant bacteria and most of these persisted throughout the depth examined. However, as the depth increased, some bacteria
<br>(some genera belonging to Beta-Proteobacteria, Nitrospira, and OP8-9) were not detectable while others (some genera belonging to Alpha-, Beta-, Gamma-Proteobacteria) newly deteced by DGGE. Crenarchaea were the predominant archaea and only one phylotype belonging to Euryarchaea was found. Both the
<br>archaeal and bacterial profiles revealed by the DGGE band patterns could be grouped into four and three subsets, respectively, subsets that were largely divided by the border between the Holocene and Pleistocene. Thus, the diversity of the current microbial communities in Lake Hovsgol sediments decreases with increasing
<br>depth. These changes probably relate to the environmental conditions in the sediments, which were shaped by the paleoclimatic events taking place between the Holocene and Pleistocene.
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- Arthrobacter soli sp. nov., a Novel Bacterium Isolated from Wastewater Reservoir Sediment
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Seong Woon Roh , Youlboong Sung , Young-Do Nam , Ho-Won Chang , Kyoung-Ho Kim , Jung-Hoon Yoon , Che Ok Jeon , Hee-Mock Oh , Jin-Woo Bae
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J. Microbiol. 2008;46(1):40-44.
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DOI: https://doi.org/10.1007/s12275-007-0239-8
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A novel Gram-positive bacterium, designated SYB2T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Micrococcaceae. SYB2T and Arthrobacter protophormiae ATCC 19271T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was anteiso-C15:0, anteiso-C17:0, iso-C16:0, and iso-C15:0. Analysis of 16S rRNA gene sequences and DNA-DNA relatedness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2T and other Arthrobacter species. The type strain of the novel species was identified as SYB2T (= KCTC 19291T= DSM 19449T).
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Eui-Sang Cho, Chi Young Hwang, Hyung Wook Kwon, Myung-Ji Seo
Archives of Microbiology.2022;[Epub] CrossRef - Fibrivirga algicola gen. nov., sp. nov., an algicidal bacterium isolated from a freshwater river
Sanghwa Park, Ja Young Cho, Dong-Hyun Jung, Seok Won Jang, Jung Hye Eom, Seung Won Nam, Dae Ryul Kwon, Jaewon Ryu, Keug Tae Kim
Antonie van Leeuwenhoek.2022; 115(7): 899. CrossRef -
Limnovirga soli gen. nov., sp. nov., isolated from river sediment
Kyung June Yim, Dong-Hyun Jung, Seok Won Jang, Sanghwa Park
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Halobellus ruber sp. nov., a deep red-pigmented extremely halophilic archaeon isolated from a Korean solar saltern
Chi Young Hwang, Eui-Sang Cho, Deok Jun Yoon, Myung-Ji Seo
Antonie van Leeuwenhoek.2021; 114(7): 997. CrossRef - Glutamicibacter mishrai sp. nov., isolated from the coral Favia veroni from Andaman Sea
Lipika Das, Sushanta Deb, Subrata K. Das
Archives of Microbiology.2020; 202(4): 733. CrossRef - Hymenobacter lutimineralis sp. nov., belonging to the family Hymenobacteraceae, isolated from zeolite
Eui-Sang Cho, So-Lim Park, Young-Do Nam, Seong-Il Lim, Dae-Young Kim, Dong-Hyun Jung, Jae-Hwan Kim, Myung-Ji Seo
Antonie van Leeuwenhoek.2020; 113(7): 947. CrossRef - Roseovarius faecimaris sp. nov., isolated from a tidal flat
In-Tae Cha, Eui-Sang Cho, Hak-Jong Choi, Seong Woon Roh, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2019; 69(5): 1465. CrossRef - Inhibitory effect of Bacillus velezensis on biofilm formation by Streptococcus mutans
Yesol Yoo, Dong-Ho Seo, Hyunjin Lee, Eui-Sang Cho, Nho-Eul Song, Tea Gyu Nam, Young-Do Nam, Myung-Ji Seo
Journal of Biotechnology.2019; 298: 57. CrossRef - Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
Yeon Bee Kim, Joon Yong Kim, Hye Seon Song, Changsu Lee, Seung Woo Ahn, Se Hee Lee, Min Young Jung, Jin-Kyu Rhee, Juseok Kim, Dong-Wook Hyun, Jin-Woo Bae, Seong Woon Roh
Scientific Reports.2018;[Epub] CrossRef - Zunongwangia flava sp. nov., belonging to the family Flavobacteriaceae, isolated from Salicornia europaea
Eui-Sang Cho, In-Tae Cha, Hak-Jong Choi, Seong Woon Roh, Young-Do Nam, Sung Man Seo, Myung-Ji Seo
Journal of Microbiology.2018; 56(12): 868. CrossRef - Flavimarina flava sp. nov., isolated from Salicornia herbacea
Eui-Sang Cho, In-Tae Cha, Jung-Min Park, Hak-Jong Choi, Jong Hun Lee, Seong Woon Roh, Eun-Ah Cho, Mee-Hyang Kweon, Young-Do Nam, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2017; 67(10): 4240. CrossRef - Paenibacillus arcticus sp. nov., isolated from Arctic soil
In-Tae Cha, Eui-Sang Cho, Yesol Yoo, Yoon Ji Seok, Inhye Park, Hee Seon Lim, Jung-Min Park, Seong Woon Roh, Young-Do Nam, Hak-Jong Choi, Yoo Kyung Lee, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2017; 67(11): 4385. CrossRef - Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat
In-Tae Cha, Eui-Sang Cho, Jung-Min Park, Jung-Yong Yeh, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 5205. CrossRef - Aquimarina versatilis sp. nov., isolated from seashore sand, and emended description of the genus Aquimarina
Jae Kook Lee, In-Tae Cha, Minwook Kim, Bong-geun Choi, Hye Seon Song, Joon Yong Kim, Seong Woon Roh, Sung-Jae Lee
International Journal of Systematic and Evolutionary Microbiology.2017; 67(2): 411. CrossRef - Molecular Analysis of Arthrobacter Myovirus vB_ArtM-ArV1: We Blame It on the Tail
Laura Kaliniene, Eugenijus Šimoliūnas, Lidija Truncaitė, Aurelija Zajančkauskaitė, Juozas Nainys, Algirdas Kaupinis, Mindaugas Valius, Rolandas Meškys, Rozanne M. Sandri-Goldin
Journal of Virology.2017;[Epub] CrossRef - Thalassobius litorarius sp. nov., isolated from a tidal flat
Inhye Park, In-Tae Cha, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2016; 66(4): 1666. CrossRef -
Genome Sequence of
Arthrobacter antarcticus
Strain W2, Isolated from a Slaughterhouse
Jakob Herschend, Prem K. Raghupathi, Henriette L. Røder, Søren J. Sørensen, Mette Burmølle
Genome Announcements.2016;[Epub] CrossRef - Detailed analyses of the bacterial populations in processed cocoa beans of different geographic origin, subject to varied fermentation conditions
Cristian Bortolini, Vania Patrone, Edoardo Puglisi, Lorenzo Morelli
International Journal of Food Microbiology.2016; 236: 98. CrossRef - Review of the taxonomy of the genus Arthrobacter, emendation of the genus Arthrobacter sensu lato, proposal to reclassify selected species of the genus Arthrobacter in the novel genera Glutamicibacter gen. nov., Paeniglutamicibacter gen. nov., Pseudogluta
Hans-Jürgen Busse
International Journal of Systematic and Evolutionary Microbiology.2016; 66(1): 9. CrossRef - Halostella salina gen. nov., sp. nov., an extremely halophilic archaeon isolated from solar salt
Hye Seon Song, In-Tae Cha, Jin-Kyu Rhee, Kyung June Yim, Ah Yoon Kim, Jong-Soon Choi, Su Jeong Baek, Myung-Ji Seo, Soo-Je Park, Young-Do Nam, Seong Woon Roh
International Journal of Systematic and Evolutionary Microbiology.2016; 66(7): 2740. CrossRef - Arthrobacter echini sp. nov., isolated from the gut of a purple sea urchin, Heliocidaris crassispina
June-Young Lee, Dong-Wook Hyun, Pil Soo Kim, Hyun Sik Kim, Na-Ri Shin, Ji-Hyun Yun, Mi-Ja Jung, Min-Soo Kim, Tae Woong Whon, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2016; 66(4): 1887. CrossRef - Pseudoruegeria aestuarii sp. nov., of the family Rhodobacteraceae, isolated from a tidal flat
In-Tae Cha, Inhye Park, Hae-Won Lee, Hyunjin Lee, Jung-Min Park, Seong Woon Roh, Hak-Jong Choi, Young-Do Nam, Yoo Kyung Lee, Myung-Ji Seo
International Journal of Systematic and Evolutionary Microbiology.2016; 66(8): 3125. CrossRef - Vulcanisaeta thermophila sp. nov., a hyperthermophilic and acidophilic crenarchaeon isolated from solfataric soil
Kyung June Yim, In-Tae Cha, Jin-Kyu Rhee, Hye Seon Song, Dong-Wook Hyun, Hae-Won Lee, Daekyung Kim, Kil-Nam Kim, Young-Do Nam, Myung-Ji Seo, Jin-Woo Bae, Seong Woon Roh
International Journal of Systematic and Evolutionary Microbiology.2015; 65(Pt_1): 201. CrossRef - Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt
In-Tae Cha, Kyung June Yim, Hye Seon Song, Hae-Won Lee, Dong-Wook Hyun, Kil-Nam Kim, Jong-Soon Choi, Daekyung Kim, Sung-Jae Lee, Myung-Ji Seo, Hak-Jong Choi, Jin-Woo Bae, Sung-Keun Rhee, Seong Woon Roh, Young-Do Nam
Antonie van Leeuwenhoek.2014; 105(5): 907. CrossRef - Citrimicrobium luteum gen. nov., sp. nov., aerobic anoxygenic phototrophic bacterium isolated from the gut of a sea cucumber Stichopus japonicus
Hong-Joo Jung, In-Tae Cha, Kyung June Yim, Hye Seon Song, Kichul Cho, Daekyung Kim, Hae-Won Lee, Jae Kook Lee, Myung-Ji Seo, Seong Woon Roh, Sung-Jae Lee
Journal of Microbiology.2014; 52(10): 819. CrossRef - Halobellus rufus sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt
In-Tae Cha, Kyung June Yim, Hye Seon Song, Hae-Won Lee, Dong-Wook Hyun, Kil-Nam Kim, Myung-Ji Seo, Daekyung Kim, Jong-Soon Choi, Sung-Jae Lee, Jin-Woo Bae, Sung-Keun Rhee, Hak-Jong Choi, Jin-Kyu Rhee, Young-Do Nam, Seong Woon Roh
Antonie van Leeuwenhoek.2014; 105(5): 925. CrossRef - Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome
Eugenijus Šimoliūnas, Laura Kaliniene, Miroslav Stasilo, Lidija Truncaitė, Aurelija Zajančkauskaitė, Juozas Staniulis, Juozas Nainys, Algirdas Kaupinis, Mindaugas Valius, Rolandas Meškys, Adam Driks
PLoS ONE.2014; 9(10): e111230. CrossRef - Halorubrum halophilum sp. nov., an extremely halophilic archaeon isolated from a salt-fermented seafood
Kyung June Yim, In-Tae Cha, Hae-Won Lee, Hye Seon Song, Kil-Nam Kim, Sung-Jae Lee, Young-Do Nam, Dong-Wook Hyun, Jin-Woo Bae, Sung-Keun Rhee, Myung-Ji Seo, Jong-Soon Choi, Hak-Jong Choi, Seong Woon Roh, Daekyung Kim
Antonie van Leeuwenhoek.2014; 105(3): 603. CrossRef - Halococcus sediminicola sp. nov., an extremely halophilic archaeon isolated from a marine sediment
Kyung June Yim, In-Tae Cha, Tae Woong Whon, Hae-Won Lee, Hye Seon Song, Kil-Nam Kim, Young-Do Nam, Sung-Jae Lee, Jin-Woo Bae, Sung-Keun Rhee, Jong-Soon Choi, Myung-Ji Seo, Seong Woon Roh, Daekyung Kim
Antonie van Leeuwenhoek.2014; 105(1): 73. CrossRef - Halapricum salinum gen. nov., sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt
Hye Seon Song, In-Tae Cha, Kyung June Yim, Hae-Won Lee, Dong-Wook Hyun, Sung-Jae Lee, Sung-Keun Rhee, Kil-Nam Kim, Daekyung Kim, Jong-Soon Choi, Myung-Ji Seo, Hak-Jong Choi, Jin-Woo Bae, Jin-Kyu Rhee, Young-Do Nam, Seong Woon Roh
Antonie van Leeuwenhoek.2014; 105(5): 979. CrossRef - Draft Genome Sequence of Arthrobacter crystallopoietes Strain BAB-32, Revealing Genes for Bioremediation
M. N. Joshi, A. S. Pandit, A. Sharma, R. V. Pandya, S. M. Desai, A. K. Saxena, S. B. Bagatharia
Genome Announcements.2013;[Epub] CrossRef -
Lactobacillus kimchiensis sp. nov., isolated from a fermented food
Jandi Kim, Joon Yong Kim, Min-Soo Kim, Seong Woon Roh, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_4): 1355. CrossRef - Paenibacillus marinisediminis sp. nov., a bacterium isolated from marine sediment
Hae-Won Lee, Seong Woon Roh, Kyung June Yim, Na-Ri Shin, Jina Lee, Tae Woong Whon, Joon Yong Kim, Dong-Wook Hyun, Daekyung Kim, Jin-Woo Bae
Journal of Microbiology.2013; 51(3): 312. CrossRef -
Gillisia marina sp. nov., from seashore sand, and emended description of the genus
Gillisia
Seong Woon Roh, Myunglip Lee, Hae-Won Lee, Kyung June Yim, Soo Yeon Heo, Kil-Nam Kim, Changmann Yoon, Young-Do Nam, Joon Yong Kim, Dong-Wook Hyun, Jin-Woo Bae, Joon Bum Jeong, Heewan Kang, Daekyung Kim
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_10): 3640. CrossRef - Rhodopirellula rosea sp. nov., a novel bacterium isolated from an ark clam Scapharca broughtonii
Seong Woon Roh, Hae-Won Lee, Kyung June Yim, Na-Ri Shin, Jina Lee, Tae Woong Whon, Na-Lae Lim, Daekyung Kim, Jin-Woo Bae
Journal of Microbiology.2013; 51(3): 301. CrossRef -
Paenibacillus oceanisediminis sp. nov. isolated from marine sediment
Jina Lee, Na-Ri Shin, Mi-Ja Jung, Seong Woon Roh, Min-Soo Kim, Jung-Sook Lee, Keun Chul Lee, Young-Ok Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_2): 428. CrossRef -
Ferrimonas
pelagia sp. nov., isolated from seawater
Kyung June Yim, Myunglip Lee, Hae-Won Lee, Kil-Nam Kim, Hye-Mi Yang, Mi-Ju Kim, Dong-Wook Hyun, Jin-Woo Bae, Young-Do Nam, Changmann Yoon, Moo-Sang Kim, Seong Woon Roh, Daekyung Kim
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_9): 3175. CrossRef -
Kistimonas scapharcae sp. nov., isolated from a dead ark clam (Scapharca broughtonii), and emended description of the genus
Kistimonas
Jina Lee, Na-Ri Shin, Hae-Won Lee, Seong Woon Roh, Min-Soo Kim, Young-Ok Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2012; 62(Pt_12): 2865. CrossRef -
Tropicimonas sediminicola sp. nov., isolated from marine sediment
Na-Ri Shin, Seong Woon Roh, Min-Soo Kim, Bora Yun, Tae Woong Whon, Young-Ok Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2012; 62(Pt_10): 2424. CrossRef -
Virgibacillus alimentarius sp. nov., isolated from a traditional Korean food
Jandi Kim, Mi-Ja Jung, Seong Woon Roh, Young-Do Nam, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2011; 61(12): 2851. CrossRef -
Microbacterium mitrae sp. nov., isolated from salted turban shell
Yun-Ji Kim, Seong Woon Roh, Mi-Ja Jung, Min-Soo Kim, Eun-Jin Park, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2011; 61(2): 399. CrossRef -
Dietzia alimentaria sp. nov., isolated from a traditional Korean food
Jandi Kim, Seong Woon Roh, Jung-Hye Choi, Mi-Ja Jung, Young-Do Nam, Min-Soo Kim, Eun-Jin Park, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2011; 61(9): 2254. CrossRef -
Arthrobacter livingstonensis sp. nov. and Arthrobacter cryotolerans sp. nov., salt-tolerant and psychrotolerant species from Antarctic soil
Lars Ganzert, Felizitas Bajerski, Kai Mangelsdorf, André Lipski, Dirk Wagner
International Journal of Systematic and Evolutionary Microbiology
.2011; 61(4): 979. CrossRef - Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
Seong Woon Roh, Kyoung-Ho Kim, Young-Do Nam, Ho-Won Chang, Eun-Jin Park, Jin-Woo Bae
The ISME Journal.2010; 4(1): 1. CrossRef -
Kocuria koreensis sp. nov., isolated from fermented seafood
Eun-Jin Park, Seong Woon Roh, Min-Soo Kim, Mi-Ja Jung, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2010; 60(1): 140. CrossRef - Arthrobacter antarcticus sp. nov., isolated from an Antarctic marine sediment
Pavan Kumar Pindi, Ruth Manorama, Zareena Begum, S. Shivaji
International Journal of Systematic and Evolutionary Microbiology.2010; 60(10): 2263. CrossRef - Oceanobacillus kimchii sp. nov. Isolated from a traditional Korean fermented food
Tae Woong Whon, Mi-Ja Jung, Seong Woon Roh, Young-Do Nam, Eun-Jin Park, Kee-Sun Shin, Jin-Woo Bae
The Journal of Microbiology.2010; 48(6): 862. CrossRef -
Kocuria atrinae sp. nov., isolated from traditional Korean fermented seafood
Eun-Jin Park, Min-Soo Kim, Seong Woon Roh, Mi-Ja Jung, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2010; 60(4): 914. CrossRef - Haladaptatus cibarius sp. nov., an extremely halophilic archaeon from seafood, and emended description of the genus Haladaptatus
Seong Woon Roh, Myung-Lip Lee, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2010; 60(5): 1187. CrossRef -
Agromyces atrinae sp. nov., isolated from fermented seafood
Eun-Jin Park, Min-Soo Kim, Mi-Ja Jung, Seong Woon Roh, Ho-Won Chang, Kee-Sun Shin, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2010; 60(5): 1056. CrossRef - Arthrobacter halodurans sp. nov., a new halotolerant bacterium isolated from sea water
Yi-Guang Chen, Shu-Kun Tang, Yu-Qin Zhang, Zhao-Yang Li, Lang-Bo Yi, Yong-Xia Wang, Wen-Jun Li, Xiao-Long Cui
Antonie van Leeuwenhoek.2009; 96(1): 63. CrossRef - Paracoccus aestuarii sp. nov., isolated from tidal flat sediment
S. W. Roh, Y.-D. Nam, H.-W. Chang, K.-H. Kim, M.-S. Kim, K.-S. Shin, J.-H. Yoon, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(4): 790. CrossRef - Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food
S. W. Roh, Y.-D. Nam, H.-W. Chang, K.-H. Kim, Y. Sung, M.-S. Kim, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(9): 2359. CrossRef - Nocardioides basaltis sp. nov., isolated from black beach sand
K.-H. Kim, S. W. Roh, H.-W. Chang, Y.-D. Nam, J.-H. Yoon, C. O. Jeon, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(1): 42. CrossRef - Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella
S. W. Roh, Y.-D. Nam, H.-W. Chang, K.-H. Kim, M.-S. Kim, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(2): 421. CrossRef - Sphingomonas aestuarii sp. nov., isolated from tidal flat sediment
S. W. Roh, K.-H. Kim, Y.-D. Nam, H.-W. Chang, M.-S. Kim, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(6): 1359. CrossRef - Halorubrum cibi sp. nov., an extremely halophilic archaeon from salt-fermented seafood
Seong Woon Roh, Jin-Woo Bae
The Journal of Microbiology.2009; 47(2): 162. CrossRef - Nitratireductor basaltis sp. nov., isolated from black beach sand
K.-H. Kim, S. W. Roh, H.-W. Chang, Y.-D. Nam, J.-H. Yoon, C. O. Jeon, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2009; 59(1): 135. CrossRef - Phylogenetic Characterization of Two Novel Commensal Bacteria Involved with Innate Immune Homeostasis inDrosophila melanogaster
Seong Woon Roh, Young-Do Nam, Ho-Won Chang, Kyoung-Ho Kim, Min-Soo Kim, Ji-Hwan Ryu, Sung-Hee Kim, Won-Jae Lee, Jin-Woo Bae
Applied and Environmental Microbiology.2008; 74(20): 6171. CrossRef - Marinobacter goseongensis sp. nov., from seawater
S. W. Roh, Z.-X. Quan, Y.-D. Nam, H.-W. Chang, K.-H. Kim, S.-K. Rhee, H.-M. Oh, C. O. Jeon, J.-H. Yoon, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2008; 58(12): 2866. CrossRef - Genomics of biological wastewater treatment
Roland J. Siezen, Marco Galardini
Microbial Biotechnology.2008; 1(5): 333. CrossRef - List of new names and new combinations previously effectively, but not validly, published
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2008; 58(9): 1993. CrossRef - Luteimonas aestuarii sp. nov., isolated from tidal flat sediment
Seong Woon Roh, Kyoung-Ho Kim, Young-Do Nam, Ho-Won Chang, Min-Soo Kim, Jung-Hoon Yoon, Hee-Mock Oh, Jin-Woo Bae
The Journal of Microbiology.2008; 46(5): 525. CrossRef - Marinomonas basaltis sp. nov., a marine bacterium isolated from black sand
H.-W. Chang, S. W. Roh, K.-H. Kim, Y.-D. Nam, J.-H. Yoon, H.-M. Oh, J.-W. Bae
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.2008; 58(12): 2743. CrossRef - Aliihoeflea aestuarii gen. nov., sp. nov., a novel bacterium isolated from tidal flat sediment
Seong Woon Roh, Kyoung-Ho Kim, Young-Do Nam, Ho-Won Chang, Min-Soo Kim, Kee-Sun Shin, Jung-Hoon Yoon, Hee-Mock Oh, Jin-Woo Bae
The Journal of Microbiology.2008; 46(5): 594. CrossRef
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