- Bacillus piscis sp. nov., a novel bacterium isolated from the muscle of the antarctic fish Dissostichus mawsoni
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Jae-Bong Lee , Seon Hwa Jeon , Seok-Gwan Choi , Hee-Young Jung , Myung Kyum Kim , Sathiyaraj Srinivasan
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J. Microbiol. 2019;57(6):539-539.
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DOI: https://doi.org/10.1007/s12275-019-0719-7
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In the article by Lee et al. published in Journal of Microbiology 2016; 54, 809–813, The KCTC accession number KCTC 18866T
in abstract and foot note should be corrected to KCTC 33839T.
The sentence in abstract should have read: Based on the phylogenetic, phenotypic, and chemotaxonomic data, strain 16MFT21T
(=KCTC 33839T =JCM 31664T).
The species description in foot note should have read: The NCBI GenBank/EMBL/DDBJ accession number for the 16S rRNA
gene sequence of strain 16MFT21T (=KCTC 33839T =JCM 31664T) is KX753358.
We apologize for any inconvenience that this may have caused.
- Hymenobacter jeollabukensis sp. nov., isolated from soil
-
Leonid N. Ten , Young Eun Han , Kyeung Il Park , In-Kyu Kang , Jeung-Sul Han , Hee-Young Jung
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J. Microbiol. 2018;56(7):500-506. Published online June 28, 2018
-
DOI: https://doi.org/10.1007/s12275-018-8085-4
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908
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6
Crossref
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Abstract
PDF
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A Gram-stain-negative, non-motile, rod-shaped, aerobic bacterial
strain, designated 1-3-3-8T, was isolated from soil and
characterized taxonomically using a polyphasic approach.
Comparative 16S rRNA gene sequence analysis showed that
strain 1-3-3-8T belongs to the family Cytophagaceae of phylum
Bacteroidetes and is most closely related to Hymenobacter
paludis KBP-30T (96.8% similarity), Hymenobacter ocellatus
Myx2105T (96.8%), Hymenobacter coalescens WW84T (95.6%),
and Hymenobacter deserti ZLB-3T (95.4%). The G + C content
of the genomic DNA of strain 1-3-3-8T was 63.6 mol%. The
isolate contained C15:0 iso (28.4%), summed feature 4 (C17:1
anteiso B/C17:1 iso I; 18.9%), and C15:0 anteiso (17.6%) as major
fatty acids, MK-7 as the predominant respiratory quinone,
and sym-homospermidine as the predominant polyamine.
The major polar lipids were phosphatidylethanolamine and
an unidentified lipid. The phenotypic and chemotaxonomic
data supported the affiliation of strain 1-3-3-8T with the genus
Hymenobacter. The DNA-DNA relatedness between strain
1-3-3-8T and H. paludis KCTC 32237T and H. ocellatus DSM
11117T were 24.5 and 27.4% respectively, clearly showing that
the isolate is not related to them at the species level. Overall,
the novel strain could be differentiated from its phylogenetic
neighbors on the basis of several phenotypic, genotypic, and
chemotaxonomic features. Therefore, strain 1-3-3-8T represents
a novel species of the genus Hymenobacter, for which
the name Hymenobacter jeollabukensis sp. nov. has been proposed.
The type strain is 1-3-3-8T (= KCTC 52741T = JCM
32192T).
-
Citations
Citations to this article as recorded by  - Isolation and characterization of two new species, Hymenobacter mellowenesis sp. nov. and Hymenobacter aranciens sp. nov., from soil
Seonjae Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
Archives of Microbiology.2024;[Epub] CrossRef -
Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Compositional Data Analysis of 16S rRNA Gene Sequencing Results from Hospital Airborne Microbiome Samples
Maria Rita Perrone, Salvatore Romano, Giuseppe De Maria, Paolo Tundo, Anna Rita Bruno, Luigi Tagliaferro, Michele Maffia, Mattia Fragola
International Journal of Environmental Research and Public Health.2022; 19(16): 10107. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2019; 69(1): 5. CrossRef - Hymenobacter oligotrophus sp. nov., isolated from a contaminated agar plate
Yingchao Geng, Yumin Zhang, Jin Tian, Jia Liu, Kun Qin, Yao Huang, Ziyan Wei, Fang Peng
Antonie van Leeuwenhoek.2019; 112(10): 1533. CrossRef - Hymenobacter edaphi sp. nov., isolated from abandoned arsenic-contaminated farmland soil
Li Nie, Xia Fan, Dongfang Xiang, Shuijiao Liao, Gejiao Wang
International Journal of Systematic and Evolutionary Microbiology.2019; 69(9): 2921. CrossRef
- Hymenobacter terrigena sp. nov., isolated from soil
-
Jeong-Eun Ohn , Leonid N. Ten , Kyeung Il Park , Byung-Oh Kim , Jeung-Sul Han , Hee-Young Jung
-
J. Microbiol. 2018;56(4):231-237. Published online April 2, 2018
-
DOI: https://doi.org/10.1007/s12275-018-8029-z
-
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837
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4
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Abstract
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A Gram-stain-negative, non-motile, non-spore-forming, rodshaped,
aerobic bacterial strain, designated S1-2-2-5T, was isolated
from the Jeollabuk-do province, Republic of Korea, and
was characterized taxonomically using a polyphasic approach.
Comparative 16S rRNA gene sequence analysis showed that
strain S1-2-2-5T belonged to the family Cytophagaceae in phylum
Bacteroidetes, and was most closely related to Hymenobacter
terrae DG7AT (98.2%), Hymenobacter rubidus DG7BT
(98.0%), Hymenobacter soli PB17T (97.7%), Hymenobacter
daeguensis 16F3Y-2T (97.2%) and Hymenobacter saemangeumensis
GSR0100T (97.0%). The G + C content of the genomic
DNA of strain S1-2-2-5T was 59.4 mol%. The detection of
menaquinone MK-7 as the predominant respiratory quinone,
a fatty acid profile with summed feature 3 (C16:1 ω7c/C16:1 ω6c;
32.0%), C15:0 iso (19.0%), and C15:0 anteiso (15.0%) as the major
components, and a polar lipid profile with phosphatidylethanolamine
as the major component supported the affiliation
of strain S1-2-2-5T to the genus Hymenobacter. The
DNA-DNA relatedness between strain S1-2-2-5T and H.
terrae KCTC 32554T, H. rubidus KCTC 32553T, H. soli KCTC
12607T, H. daeguensis KCTC 52537T, and H. saemangeumensis
KACC 16452T were 49.5, 48.2, 34.1, 28.1, and 31.8% respectively,
clearly showing that the isolate is not related to them
at the species level. Strain S1-2-2-5T could be clearly differentiated
from its closest neighbors on the basis of its phenotypic,
genotypic and chemotaxonomic features. Therefore,
strain S1-2-2-5T represents a novel species of the genus Hymenobacter,
for which the name Hymenobacter terrigena
sp. nov. is proposed. The type strain is S1-2-2-5T (= KCTC
52737T = JCM 32195T).
-
Citations
Citations to this article as recorded by - Isolation and characterization of two new species, Hymenobacter mellowenesis sp. nov. and Hymenobacter aranciens sp. nov., from soil
Seonjae Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
Archives of Microbiology.2024;[Epub] CrossRef -
Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Hymenobacter cyanobacteriorum sp. nov., isolated from a freshwater reservoir during the cyanobacterial bloom period
Ve Van Le, So-Ra Ko, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
Archives of Microbiology.2022;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(9): 2707. CrossRef
- Spirosoma pomorum sp. nov., isolated from apple orchard soil
-
Weilan Li , Seung-Yeol Lee , In-Kyu Kang , Leonid N. Ten , Hee-Young Jung
-
J. Microbiol. 2018;56(2):90-96. Published online February 2, 2018
-
DOI: https://doi.org/10.1007/s12275-018-7430-y
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966
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10
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Abstract
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A Gram-negative, motile, rod-shaped, aerobic bacterial strain,
designated S7-2-11T, was isolated from apple orchard soil
from Gyeongsangnam-do Province, Republic of Korea, and
was characterized taxonomically using a polyphasic approach.
16S rRNA gene sequence analysis indicated that strain S7-2-
11T belongs to the family Cytophagaceae in phylum Bacteroidetes,
and is closely related to Spirosoma luteolum 16F6ET
(94.2% identity), Spirosoma knui 15J8-12T (92.7%), and Spirosoma
linguale DSM 74T (91.0%). The G + C content of the genomic
DNA of strain S7-2-11T was 49.8 mol%. Strain S7-2-11T
contained summed feature 3 (C16:1 ω7c/C16:1 ω6c; 35.1%), C16:1
ω5c (22.4%), C15:0 iso (13.9%), and C17:0 iso 3-OH (10.6%) as
major cellular fatty acids, and MK-7 as the predominant respiratory
quinone. The main polar lipids were phosphatidylethanolamine,
an unidentified aminophospholipid, and two
unidentified polar lipids. Phenotypic and chemotaxonomic
data supported the affiliation of strain S7-2-11T with the genus
Spirosoma. The results of physiological and biochemical
tests showed the genotypic and phenotypic differentiation of
the isolate from recognized Spirosoma species. On the basis
of its phenotypic properties, genotypic distinctiveness, and
chemotaxonomic features, strain S7-2-11T represents a novel
species of the genus Spirosoma, for which the name Spirosoma
pomorum sp. nov. is proposed. The type strain is S7-2-11T
(= KCTC 52726T = JCM 32130T).
-
Citations
Citations to this article as recorded by - Chloroxylenol positively affects the aerobic sequencing batch reactor performance and reshapes microbial communities and antibiotic resistance genes
Qiao Ma, Hanqing Pan, Da Li, Jingwei Wang
Journal of Water Process Engineering.2024; 57: 104642. CrossRef - Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
Scientific Reports.2023;[Epub] CrossRef -
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Barks from avocado trees of different geographic locations have consistent microbial communities
Eneas Aguirre-von-Wobeser, Alexandro Alonso-Sánchez, Alfonso Méndez-Bravo, Luis Alberto Villanueva Espino, Frédérique Reverchon
Archives of Microbiology.2021; 203(7): 4593. CrossRef -
Spirosoma endbachense sp. nov., isolated from a natural salt meadow
Julian Rojas, Binoy Ambika Manirajan, Stefan Ratering, Christian Suarez, Rita Geissler-Plaum, Sylvia Schnell
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Draft Genome Sequences of
Spirosoma agri
KCTC 52727 and
Spirosoma terrae
KCTC 52035
Julian Rojas, Binoy Ambika Manirajan, Stefan Ratering, Christian Suarez, Sylvia Schnell, David Rasko
Microbiology Resource Announcements.2020;[Epub] CrossRef -
Spirosoma telluris sp. nov. and Spirosoma arboris sp. nov. isolated from soil and tree bark, respectively
Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5355. CrossRef - Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
Antonie van Leeuwenhoek.2019; 112(10): 1523. CrossRef -
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2018; 68(7): 2130. CrossRef
- Larkinella roseus sp. nov., a species of the family Cytophagaceae isolated from beach soil
-
Jae-Bong Lee , Sumin Hong , Seung-Yeol Lee , Su-Jin Park , Kyeung Il Park , Seok-Gwan Choi , Myung Kyum Kim , Leonid N. Ten , Hee-Young Jung
-
J. Microbiol. 2018;56(1):30-35. Published online January 4, 2018
-
DOI: https://doi.org/10.1007/s12275-018-7476-x
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1,007
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4
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Abstract
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The taxonomic position of bacterial strain, designated 15J16-
1T3AT, recovered from a soil sample was established using
a polyphasic approach. Phylogenic analysis based on the
16S rRNA gene sequence showed that strain 15J16-1T3AT
belonged to the family Cytophagaceae, phylum Bacteroidetes,
and was most closely related to ‘Larkinella harenae’ 15J9-9
(95.9% similarity), Larkinella ripae 15J11-11T (95.6%), Larkinella
bovis M2TB15T (94.7%), Larkinella arboricola Z0532T
(93.9%), and Larkinella insperata LMG 22510T (93.5%). Cells
were rod-shaped, Gram-stain-negative, aerobic, and nonmotile.
The isolate grew on NA, R2A, TSA, but not on LB
agar. The strain was able to grow at temperature range from
10°C to 30°C with an optimum at 25°C and pH 6–8. Menaquinone
MK-7 was the predominant respiratory quinone.
The major cellular fatty acids comprised C16:1 ω5c (48.6%)
and C15:0 iso (24.1%). Phosphatidylethanolamine, phosphatidylserine,
and an unidentified lipid were the major polar
lipids. The G + C content of the genomic DNA was 49.5
mol%. Strain 15J16-1T3AT could be distinguished from its
closest phylogenetic neighbors based on its phenotypic, genotypic,
and chemotaxonomic features. Therefore, the isolate
is considered to represent a novel species in the genus
Larkinella, for which the name Larkinella roseus sp. nov. is
proposed. The type strain is 15J16-1T3AT (= KCTC 52004T
= JCM 31991T).
-
Citations
Citations to this article as recorded by - Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
Yuna Park, Leonid N. Ten, Young Koung Lee, Hee‑Young Jung, Myung Kyum Kim
Archives of Microbiology.2022;[Epub] CrossRef - Larkinella punicea sp. nov., isolated from manganese mine soil
Zijie Zhou, Lin Zhu, Yixuan Dong, Xian Xia, Shijuan Wu, Gejiao Wang
Archives of Microbiology.2020; 202(9): 2517. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1411. CrossRef - Hymenobacter segetis sp. nov., isolated from soil
Leonid N. Ten, Soo Jeong Lim, Byung-Oh Kim, In-Kyu Kang, Hee-Young Jung
Archives of Microbiology.2018; 200(8): 1167. CrossRef
- Spirosoma migulaei sp. nov., isolated from soil
-
Joseph Okiria , Leonid N. Ten , Su-Jin Park , Seung-Yeol Lee , Dong Hoon Lee , In-Kyu Kang , Dae Sung Lee , Hee-Young Jung
-
J. Microbiol. 2017;55(12):927-932. Published online December 7, 2017
-
DOI: https://doi.org/10.1007/s12275-017-7377-4
-
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1,000
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8
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Abstract
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A Gram-stain-negative, non-motile, non-spore-forming, rodshaped,
aerobic bacterium, designated 15J9-8T, was isolated
from soil on Jeju Island, Republic of Korea. The isolate was
able to grow between 10 and 30°C, pH 6.5–8.5, and in presence
of 0–1% (w/v) NaCl. The results of comparative 16S
rRNA gene sequence analysis indicated that strain 15J9-8T
represented a member of the family Cytophagaceae, phylum
Bacteroidetes, and was most closely related to Spirosoma
aerophilum 5516J-17T (96.1% similarity), Spirosoma pulveris
JSH5-14T (95.6%), and Spirosoma linguale DSM 74T (95.2%).
The G + C content of the genomic DNA of the isolate was
47.0 mol%. Strain 15J9-8T contained summed feature 3 (C16:1
ω7c/C16:1 ω6c), C16:1 ω5c, and iso-C15:0 as the major fatty acids,
phosphatidylethanolamine and an unidentified aminophospholipid
as the main polar lipids, and menaquinone MK-7
as the predominant respiratory quinone. On the basis of its
phenotypic and genotypic properties, and phylogenetic distinctiveness,
strain 15J9-8T should be classified as a representative
of a novel species of the genus Spirosoma, for which the
name Spirosoma migulaei sp. nov. is proposed. The type strain
is 15J9-8T (=KCTC 52028T =JCM 31996T).
-
Citations
Citations to this article as recorded by - Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
Scientific Reports.2023;[Epub] CrossRef -
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Fibrivirga algicola gen. nov., sp. nov., an algicidal bacterium isolated from a freshwater river
Sanghwa Park, Ja Young Cho, Dong-Hyun Jung, Seok Won Jang, Jung Hye Eom, Seung Won Nam, Dae Ryul Kwon, Jaewon Ryu, Keug Tae Kim
Antonie van Leeuwenhoek.2022; 115(7): 899. CrossRef -
Spirosoma telluris sp. nov. and Spirosoma arboris sp. nov. isolated from soil and tree bark, respectively
Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5355. CrossRef -
Complete Genome Sequence of
Spirosoma
sp. Strain KCTC 42546, Isolated from a Reservoir in South Korea
Pokchut Kusolkumbot, Song-Gun Kim, Chatrudee Suwannachart, Kenneth M. Stedman
Microbiology Resource Announcements.2020;[Epub] CrossRef - Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
Antonie van Leeuwenhoek.2019; 112(10): 1523. CrossRef -
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1411. CrossRef
- Spirosoma lituiforme sp. nov., isolated from soil
-
Weilan Li , Seung-Yeol Lee , Sangkyu Park , Byung-Oh Kim , Leonid N. Ten , Hee-Young Jung
-
J. Microbiol. 2017;55(11):856-861. Published online October 27, 2017
-
DOI: https://doi.org/10.1007/s12275-017-7255-0
-
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1,002
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4
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Abstract
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A Gram-staining-negative, non-motile, curved rod-shaped,
aerobic bacterium, designated S1-2-4T, was isolated from
soil in Jeollabuk-do province, Republic of Korea, and was
characterized taxonomically using a polyphasic approach.
Comparative 16S rRNA gene sequence analysis showed that
strain S1-2-4T was a member of the family Cytophagaceae
and most closely related to ‘Spirosoma radiotolerans’ DG5A
(97.2%), Spirosoma fluviale MSd3T (96.4%), and Spirosoma
linguale DSM 74T (96.3%). The genomic DNA G + C content
of strain S1-2-4T was 49.7 mol%. The major fatty acids were
summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, and C16:0,
and the major polar lipid was phosphatidylethanolamine.
MK-7 was the predominant respiratory quinone. Phenotypic
and chemotaxonomic data supported the affiliation of strain
S1-2-4T with the genus Spirosoma. DNA-DNA hybridization
between strain S1-2-4T and ‘Spirosoma radiotolerans’ showed
relatively low DNA-DNA relatedness (31%). Strain S1-2-4T
could be distinguished from its closest phylogenetic neighbors
based on its phenotypic, genotypic, and chemotaxonomic
features. Therefore, strain S1-2-4T represents a novel
member of the genus Spirosoma, for which the name Spirosoma
lituiforme sp. nov. is proposed. The type strain is S1-
2-4T (= KCTC 52724T = JCM 32128T).
-
Citations
Citations to this article as recorded by -
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
Antonie van Leeuwenhoek.2019; 112(10): 1523. CrossRef -
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2018; 68(3): 693. CrossRef
- Spirosoma flavus sp. nov., a novel bacterium from soil of Jeju Island
-
Nabil Elderiny , Seung-Yeol Lee , Sangkyu Park , In-Kyu Kang , Myung Kyum Kim , Dae Sung Lee , Leonid N. Ten , Hee-Young Jung
-
J. Microbiol. 2017;55(11):850-855. Published online October 27, 2017
-
DOI: https://doi.org/10.1007/s12275-017-7360-0
-
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858
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1
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-
A novel, Gram-staining negative, yellow pigmented bacterial
strain, designated 15J11-2T, was isolated from soil sample
on Jeju Island, Republic of Korea. The strain was subjected to
a taxonomic study using a polyphasic approach. The strain
was able to grow at temperature range from 10°C to 30°C,
pH 7–8, and in presence of 0–1% (w/v) NaCl. Comparative
16S rRNA gene sequence analysis showed that strain
15J11-2T belongs to the genus Spirosoma and levels of 16S
rRNA gene sequence similarity ranged from 91.5% to 89.8%.
The genomic DNA G + C content of strain 15J11-2T was
46.0 mol%. The isolate contained phosphatidylethanolamine
and an unidentified aminophospholipid as the main
polar lipids, menaquinone MK-7 as the predominant respiratory
quinone, and summed feature 3 (C16:1 ω6c/C16:1 ω7c;
39.4%), C16:1 ω5c (27.1%), and C16:0 (13.0%) as the major fatty
acids, which supported the affiliation of strain 15J11-2T to
the genus Spirosoma. The results of physiological and biochemical
tests allowed genotypic and phenotypic differentiation
of strain 15J11-2T from recognized Spirosoma
species. On the basis of its phenotypic properties, genotypic
distinctiveness, chemotaxonomic features, strain 15J11-2T
represents a novel species of the genus Spirosoma, for which
the name Spirosoma flavus sp. nov. is proposed. The type
strain is 15J11-2T (= KCTC 52026T = JCM 31998T).
-
Citations
Citations to this article as recorded by - Spirosoma profusum sp. nov., and Spirosoma validum sp. nov., radiation-resistant bacteria isolated from soil in South Korea
Yuna Park, Soohyun Maeng, Tuvshinzaya Damdintogtokh, Jing Zhang, Min-Kyu Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
Antonie van Leeuwenhoek.2021; 114(7): 1155. CrossRef
- Spirosoma daeguensis sp. nov., isolated from beach soil
-
Nabil Elderiny , Leonid N. Ten , Jae-Jin Lee , Seung-Yeol Lee , Sangkyu Park , Young-Je Cho , Myung Kyum Kim , Hee-Young Jung
-
J. Microbiol. 2017;55(9):678-683. Published online September 2, 2017
-
DOI: https://doi.org/10.1007/s12275-017-7211-z
-
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913
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-
A Gram-stain-negative, non-motile, non-spore-forming, rodshaped,
aerobic bacterium, designated 15J9-6T, was isolated
from beach soil on Jeju Island, South Korea. Strain 15J9-6T,
grew at 10–30°C (optimum growth at 25°C) and pH 7–8 (optimum
growth at pH 7) on R2A, NA, and TSA agar. Phylogenetically,
the strain was closely related to members of the
genus Spirosoma (92.3–90.1% 16S rRNA gene sequence similarities)
and showed highest sequence similarity to Spirosoma
panaciterrae DSM 21099T (92.3%). The G+C content
of the genomic DNA of strain 15J9-6T was 45.7 mol%. The
strain contained phosphatidylethanolamine, two unidentified
aminophospholipids, an unidentified phospholipid, and an
unidentified lipid as the major polar lipids; menaquinone
MK-7 as the predominant respiratory quinone and summed
feature 3 (C16:1 ω6c/C16:1 ω7c; 30.1%), C16:1 ω5c (23.1%), iso
C15:0 (13.3%), and C16:0 (8.4%) as the major fatty acids which
supported the affiliation of strain 15J9-6T to the genus Spirosoma.
The results of physiological and biochemical tests
allowed genotypic and phenotypic differentiation of strain
15J9-6T from recognized Spirosoma species. On the basis of
its phenotypic properties and phylogenetic distinctiveness,
strain 15J9-6T represents a novel species of the genus Spirosoma,
for which the name Spirosoma daeguensis sp. nov. is
proposed. The type strain is 15J9-6T (=KCTC 52036T =JCM
31995T)
-
Citations
Citations to this article as recorded by -
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - Spirosoma humi sp. nov., Isolated from Soil in South Korea
Li Weilan, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Leonid N. Ten, Hee-Young Jung
Current Microbiology.2018; 75(3): 328. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(11): 4291. CrossRef
- Hymenobacter daeguensis sp. nov. isolated from river water
-
Leonid N. Ten , Yeon-Hee Lee , Jae-Jin Lee , Su-Jin Park , Seung-Yeol Lee , Sangkyu Park , Dae Sung Lee , In-Kyu Kang , Hee-Young Jung
-
J. Microbiol. 2017;55(4):253-259. Published online January 26, 2017
-
DOI: https://doi.org/10.1007/s12275-017-6524-2
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11
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Abstract
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A Gram-stain-negative, non-motile, non-spore-forming, rod- shaped, aerobic bacterial strain, designated 16F3Y-2T, was isolated from the Han River, South Korea, and was charac-terized taxonomically using a polyphasic approach. Compa-rative 16S rRNA gene sequence analysis showed that strain 16F3Y-2T belonged to the family Cytophagaceae in the phy-lum Bacteroidetes and was most closely related to ‘Hymeno-bacter terrae’ DG7A (98.01%), H. soli PB17T (97.26%), H. glaciei VUG-A130T (96.78%), H. antarcticus VUG-A42aaT (96.72%), H. ruber PB156T (96.61%), and H. saemangeumensis GSR0100T (95.77%). The G+C content of the genomic DNA of strain 16F3Y-2T was 62.9 mol%. The isolate contained MK-7 as the predominant respiratory quinone, and summed fea-ture 3 (C16:1 ω7c/C16:1 ω6c; 35.5%), C15:0 iso (16.9%), C16:1 ω5c (10.9%), and C15:0 anteiso (9.9%) as major fatty acids. The ma-jor polar lipid was phosphatidylethanolamine. Phenotypic and chemotaxonomic data supported the affiliation of strain 16F3Y-2T with the genus Hymenobacter. However, strain 16F3Y-2T exhibited relatively low levels of DNA-DNA related-ness with 'H. terrae' KCTC 32554 (44.1%) and H. soli KCTC 12607T (24.3%), clearly indicating that the isolate constitutes a new genospecies. Strain 16F3Y-2T could be differentiated from its phylogenetic neighbors on the basis of several phe-notypic, genotypic, and chemotaxonomic features. Therefore, strain 16F3Y-2T represents a novel species in the genus Hy-menobacter, for which the name Hymenobacter daeguensis sp. nov. is proposed. The type strain is 16F3Y-2T (=KCTC 52537T =JCM 31654T).
-
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Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Hymenobacter sediminicola sp. nov., isolated from contaminated sediment
Tingting Ren, Chengxiao Zhang, Chun-Zhi Jin, Feng-Jie Jin, Taihua Li, Hee-Mock Oh, Hyung-Gwan Lee, Long Jin
Antonie van Leeuwenhoek.2023; 116(8): 817. CrossRef - Hymenobacter pomorum sp. nov., Isolated from Apple Orchard Soil
Leonid N. Ten, Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
Current Microbiology.2019; 76(1): 117. CrossRef - Hymenobacter jeollabukensis sp. nov., isolated from soil
Leonid N. Ten, Young Eun Han, Kyeung Il Park, In-Kyu Kang, Jeung-Sul Han, Hee-Young Jung
Journal of Microbiology.2018; 56(7): 500. CrossRef -
Hymenobacter pedocola sp. nov., a novel bacterium isolated from soil
Soo-Jeong Lim, Leonid N. Ten, Byung-Oh Kim, In-Kyu Kang, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology
.2018; 68(7): 2242. CrossRef - Hymenobacter rufus sp. nov., a bacterium isolated from soil
Jeong-Eun Ohn, Leonid N. Ten, Byung-Oh Kim, Young-Je Cho, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology.2018; 68(9): 2983. CrossRef - Description of Hymenobacter daejeonensis sp. nov., isolated from grass soil, based on multilocus sequence analysis of the 16S rRNA gene, gyrB and tuf genes
Long Jin, Xuewen Wu, So-Ra Ko, Feng-Jie Jin, Taihua Li, Chi-Yong Ahn, Hee-Mock Oh, Hyung-Gwan Lee
Antonie van Leeuwenhoek.2018; 111(12): 2283. CrossRef - Hymenobacter segetis sp. nov., isolated from soil
Leonid N. Ten, Soo Jeong Lim, Byung-Oh Kim, In-Kyu Kang, Hee-Young Jung
Archives of Microbiology.2018; 200(8): 1167. CrossRef - Hymenobacter agri sp. nov., a novel bacterium isolated from soil
Jigon Han, Leonid N. Ten, Dong Hoon Lee, In-Kyu Kang, Hee-Young Jung
Antonie van Leeuwenhoek.2018; 111(10): 1815. CrossRef - Hymenobacter terrigena sp. nov., isolated from soil
Jeong-Eun Ohn, Leonid N. Ten, Kyeung Il Park, Byung-Oh Kim, Jeung-Sul Han, Hee-Young Jung
Journal of Microbiology.2018; 56(4): 231. CrossRef - List of novel names and novel combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(7): 2075. CrossRef
- Spirosoma luteolum sp. nov. isolated from water
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Jae-Jin Lee , Su-Jin Park , Yeon-Hee Lee , Seung-Yeol Lee , Sangkyu Park , Young-Je Cho , Myung Kyum Kim , Leonid N. Ten , Hee-Young Jung
-
J. Microbiol. 2017;55(4):247-252. Published online March 13, 2017
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DOI: https://doi.org/10.1007/s12275-017-6455-y
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1,046
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Abstract
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A novel Gram-negative and rod-shaped bacterial strain, de-signated as 16F6ET, was isolated from a water sample. Cells were yellowish in color and catalase- and oxidase-positive. The strain grew at 10–37°C (optimum at 25°C) but not at 4 and 42°C, and pH 5–7 (optimum at pH 7). It showed mod-erate resistance to gamma-ray irradiation. Comparative phy-logenetic analysis showed that strain 16F6ET belonged to the family Cytophagaceae of the class Cytophagia. Furthermore, this isolate showed relatively low 16S rRNA gene sequence similarities (90.7–93.1%) to the members of the genus Spiro-soma. The major fatty acids were summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, C16:0 N alcohol, and C16:0. The polar lipid profile indicated presence of phosphatidylethanolamine, unknown aminophospholipids, an unknown amino lipid, unknown phospholipids, and unknown polar lipids. The pre-dominant isoprenoid quinone was MK-7. The genomic DNA G+C content of strain 16F6ET was 56.5 mol%. Phenotypic, phylogenetic, and chemotaxonomic properties indicated that isolate 16F6ET represents a novel species within the genus Spirosoma, for which the name Spirosoma luteolum sp. nov. is proposed. The type strain is 16F6ET (=KCTC 52199T =JCM 31411T).
-
Citations
Citations to this article as recorded by - Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
Scientific Reports.2023;[Epub] CrossRef -
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Theoretical design of new organic compounds based on diketopyrrolopyrrole and phenyl for organic bulk heterojunction solar cell applications: DFT and TD-DFT study
M. Raftani, T. Abram, A. Azaid, R. Kacimi, M.N. Bennani, M. Bouachrine
Materials Today: Proceedings.2021; 45: 7334. CrossRef -
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - Spirosoma terrae sp. nov., Isolated from Soil from Jeju Island, Korea
Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, In-Kyu Kang, Myung Kyum Kim, Hee-Young Jung
Current Microbiology.2018; 75(4): 492. CrossRef -
Spirosoma harenae sp. nov., a Bacterium Isolated from a Sandy Beach
Leonid N. Ten, Nabil Elderiny, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, Myung Kyum Kim, Hee-Young Jung
Current Microbiology.2018; 75(2): 179. CrossRef - Spirosoma jeollabukense sp. nov., isolated from soil
Weilan Li, Leonid N. Ten, Seung-Yeol Lee, Dong Hoon Lee, Hee-Young Jung
Archives of Microbiology.2018; 200(3): 431. CrossRef - Spirosoma humi sp. nov., Isolated from Soil in South Korea
Li Weilan, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Leonid N. Ten, Hee-Young Jung
Current Microbiology.2018; 75(3): 328. CrossRef - Spirosoma horti sp. nov., isolated from apple orchard soil
Weilan Li, Leonid N. Ten, Seung-Yeol Lee, In-Kyu Kang, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology.2018; 68(3): 930. CrossRef - Spirosoma agri sp. nov., Isolated from Apple Orchard Soil
Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
Current Microbiology.2018; 75(6): 694. CrossRef - Spirosoma pomorum sp. nov., isolated from apple orchard soil
Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
Journal of Microbiology.2018; 56(2): 90. CrossRef -
Spirosoma metallilatum sp. nov., isolated from an automotive air conditioning system
Dong-Uk Kim, Hyosun Lee, Suyeon Lee, Sooyeon Park, Jung-Hoon Yoon, Jong-Ok Ka
International Journal of Systematic and Evolutionary Microbiology
.2018; 68(2): 523. CrossRef - Spirosoma migulaei sp. nov., isolated from soil
Joseph Okiria, Leonid N. Ten, Su-Jin Park, Seung-Yeol Lee, Dong Hoon Lee, In-Kyu Kang, Dae Sung Lee, Hee-Young Jung
Journal of Microbiology.2017; 55(12): 927. CrossRef - Spirosoma litoris sp. nov., a bacterium isolated from beach soil
Joseph Okiria, Leonid N. Ten, Jae-Jin Lee, Seung-Yeol Lee, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 4986. CrossRef - Spirosoma flavus sp. nov., a novel bacterium from soil of Jeju Island
Nabil Elderiny, Seung-Yeol Lee, Sangkyu Park, In-Kyu Kang, Myung Kyum Kim, Dae Sung Lee, Leonid N. Ten, Hee-Young Jung
Journal of Microbiology.2017; 55(11): 850. CrossRef - Spirosoma koreense sp. nov., a species of the family Cytophagaceae isolated from beach soil
Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, In-Kyu Kang, Dae Sung Lee, Hee-Young Jung
International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 5198. CrossRef - Spirosoma daeguensis sp. nov., isolated from beach soil
Nabil Elderiny, Leonid N. Ten, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
Journal of Microbiology.2017; 55(9): 678. CrossRef - List of novel names and novel combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(7): 2075. CrossRef
- Bacillus piscis sp. nov., a novel bacterium isolated from the muscle of the antarctic fish Dissostichus mawsoni
-
Jae-Bong Lee , Seon Hwa Jeon , Seok-Gwan Choi , Hee-Young Jung , Myung Kyum Kim , Sathiyaraj Srinivasan
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J. Microbiol. 2016;54(12):809-813. Published online November 26, 2016
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DOI: https://doi.org/10.1007/s12275-016-6473-1
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1,342
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9
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4
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In this paper, a new bacterial strain designated as 16MFT21T
is isolated from the muscle of a fish caught in the Antarctic
Ocean. Strain 16MFT21T is a Gram-staining-positive, catalase-
oxidase-positive, rod-shaped facultative-aerobic bacterium.
The phylogenetic analysis that is based on the 16S-rRNA
gene sequence of strain 16MFT21T revealed that it belongs to
the genus Bacillus in the family Bacillaceae in the class Bacilli.
The highest degrees of the sequence similarity of the strain
16MFT21T is with Bacillus licheniformis ATCC 14580T (96.6%)
and Bacillus sonorensis NBRC 101234T (96.6%). The isolate
formed a pale-yellow pigment, and it grew in the presence of
0% to 10% (w/v) NaCl (optimum at 2% NaCl), a pH of 6.0 to
10.0 (optimum pHfrom 7.0 to 8.0), and from 4°C to 30°C
(optimum at 30°C). The major polar lipids consist of diphosphatidylglycerol
(DPG) and phosphatidylglycerol (PG). The
predominant fatty acids are iso-C15:0, anteiso-C15:0, iso-C17:0,
and anteiso-C17:0. The main respiratory quinone is menaquinone-
7 (MK-7), and based on the use of the meso-diaminopimelic
acid as the diagnostic diamino acid, the peptidoglycan
cell-wall type is A1γ. Based on the phylogenetic,
phenotypic, and chemotaxonomic data, strain 16MFT21T
(=KCTC 18866T =JCM 31664T) for which the name Bacillus
piscis sp. nov. is proposed should be classified as a new species.
-
Citations
Citations to this article as recorded by - Culture-dependent and -independent analyses of bacterial compositions and its contributions to formation of γ-aminobutyric acid and poly-γ-glutamic acid in Cheonggukjang
Young Hun Jin, Jae-Hyung Mah
Food Research International.2024; 179: 114026. CrossRef - Metagenomic and culturomic analyses of bacterial species contributing to tyramine formation in Cheonggukjang
Jong Hyoung Hong, Young Hun Jin, Alixander Mattay Pawluk, Jae-Hyung Mah
LWT.2024; 201: 116265. CrossRef - Statistical optimization of waste molasses-based exopolysaccharides and self-sustainable bioelectricity production for dual chamber microbial fuel cell by Bacillus piscis
Ebtehag A. E. Sakr, Dena Z. Khater, Zeinab M. H. Kheiralla, Kamel M. El‑khatib
Microbial Cell Factories.2023;[Epub] CrossRef - Isolation, characterization, and interaction of lignin‐degrading bacteria from rumen of buffalo (Bubalus bubalis)
Zhen Wang, Wenqing Wu, Luncheng Cui, Xiang Li, Muhammad Fakhar‐e‐Alam Kulyar, Haiqian Xiong, Nian Zhou, Huaihui Yin, Jiakui Li, Xiang Li
Journal of Basic Microbiology.2021; 61(8): 757. CrossRef
- Deinococcus sedimenti sp. nov. isolated from river sediment
-
Jae-Jin Lee , Yeon-Hee Lee , Su-Jin Park , Sangyong Lim , Sun-Wook Jeong , Seung-Yeol Lee , Sangkyu Park , Hyo-Won Choi , Myung Kyum Kim , Hee-Young Jung
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J. Microbiol. 2016;54(12):802-808. Published online November 26, 2016
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DOI: https://doi.org/10.1007/s12275-016-6361-8
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959
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A novel Gram-positive, oval-shaped, non-motile bacterium
designated strain 16F1LT was isolated from sediment collected
from the Han River in Seoul, Republic of Korea. Based on the
16S rRNA gene sequence (1,448 bp), this strain was identified
as a member of the genus Deinococcus that belongs to the class
Deinococci. Similarities in the 16S rRNA gene sequence were
shown with Deinococcus daejeonensis MJ27T (99.0%), D. grandis
DSM 3963T (98.1%), D. radiotolerans C1T (97.5%), and D.
caeni Ho-08T (97.2%). Strain 16F1LT was classified as a different
genomic species from closely related Deinococcus members,
based on less than 70% DNA-DNA relatedness. Genomic
DNA G+C content of strain 16F1LT was 67.2 mol%. Strain
16F1LT was found to grow at temperatures of 10–37°C (optimum
25°C) and pH 7–8 (optimum pH 7) on R2A medium,
and was catalase-positive and oxidase-negative. Strain 16F1LT
showed resistance to gamma radiation (D10 > 2 kGy). In addition,
this strain had the following chemotaxonomic characteristics:
the major fatty acids were C15:1 ω6c and C16:1 ω7c; the
polar lipid profile contained phosphoglycolipids, unknown
aminophospholipids, an unknown aminoglycolipid, unknown
aminolipids, an unknown glycolipid, an unknown phospholipid,
and an unknown polar lipid; the major quinone was
MK-8. Phylogenetic, genotypic, phenotypic, and chemotaxonomic
characteristics indicated that strain 16F1LT represents
a novel species within the genus Deinococcus, for which the
name Deinococcus sedimenti sp. nov. is proposed. The type
strain is 16F1LT (=KCTC 33796T =JCM 31405T).
-
Citations
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Draft genome sequence of
Deinococcus
sp. ME38 isolated from sediment of the Esmeralda Lake of the Parque Nacional Lagunas De Montebello
Alejandra Osorio-González, Betsy Anaid Peña-Ocaña, Nancy Abril Martínez-López, José Humberto Castañón-González, Roberto Marín-Paredes, Ricardo Jasso-Chávez, Víctor Manuel Ruíz-Valdiviezo, Vanja Klepac-Ceraj
Microbiology Resource Announcements.2025;[Epub] CrossRef - Insights into the radiation and oxidative stress mechanisms in genus Deinococcus
Nirjara Singhvi, Chandni Talwar, Shekhar Nagar, Helianthous Verma, Jasvinder Kaur, Nitish Kumar Mahato, Nabeel Ahmad, Krishnendu Mondal, Vipin Gupta, Rup Lal
Computational Biology and Chemistry.2024; 112: 108161. CrossRef - Deinococcus fonticola sp. nov., isolated from a radioactive thermal spring in Hungary
Judit Makk, Nóra Tünde Enyedi, Erika Tóth, Dóra Anda, Attila Szabó, Tamás Felföldi, Peter Schumann, Judit Mádl-Szőnyi, Andrea K. Borsodi
International Journal of Systematic and Evolutionary Microbiology.2019; 69(6): 1724. CrossRef -
Deinococcus arcticus sp. nov., isolated from Silene acaulis rhizosphere soil of the Arctic tundra
Xin-Peng Wang, Chang-Ming Li, Yong Yu, Hui-Rong Li, Zong-Jun Du, Da-shuai Mu
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(11): 3437. CrossRef - Removal of Pb(II) by Pellicle-Like Biofilm-Producing Methylobacterium hispanicum EM2 Strain from Aqueous Media
Sun-Wook Jeong, Hyo Kim, Jung Yang, Yong Choi
Water.2019; 11(10): 2081. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M Garrity
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(5): 1095. CrossRef
- Deinococcus rubellus sp. nov., bacteria isolated from the muscle of antarctic fish
-
Seok-Gwan Choi , Seon Hwa Jeon , Jae-Bong Lee , Eun Sun Joo , Sangyong Lim , Hee-Young Jung , Myung Kyum Kim
-
J. Microbiol. 2016;54(12):796-801. Published online November 26, 2016
-
DOI: https://doi.org/10.1007/s12275-016-6390-3
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967
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Abstract
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Two new bacterial strains designated as Ant6T and Ant18 were
isolated from the muscle of a fish which had been caught in
the Antarctic Ocean. Both strains are Gram-stain-positive,
catalase positive, oxidase negative, aerobic, and coccoid bacteria.
Phylogenetic analysis based on the 16S rRNA gene sequences
of strains Ant6T and Ant18 revealed that the strains
Ant6T and Ant18 belong to the genus Deinococcus in the family
Deinococcaceae in the class Deinococci. The highest degrees of
sequence similarities of strains Ant6T and Ant18 were found
with Deinococcus alpinitundrae LMG 24283T by 96.4% and
96.8%, respectively. Strain Ant6T exhibited a high level of
DNA- DNA hybridization values with strain Ant18 (82 ± 0.6%).
Chemotaxonomic data revealed that the predominant fatty
acids were C17:0 cyclo, 16:0, and feature 3 (C16:1 ω6c/ω7c) for
both strains. A complex polar lipid profile consisted of major
amounts of unknown phosphoglycolipids (PGL) and unknown
aminophospholipid (APL). Based on the phylogenetic,
phenotypic, and chemotaxonomic data, strains Ant6T
(=KEMB 9004-169T =JCM 31434T) and Ant18 (=KEMB 9004-
170) should be classified as a new species, for which the name
Deinococcus rubellus sp. nov. is proposed.
-
Citations
Citations to this article as recorded by - Complete genome sequence of Deinococcus rubellus Ant6 isolated from the fish muscle in the Antarctic Ocean
Surajit De Mandal, Sathiyaraj Srinivasan, Junhyun Jeon
Frontiers in Bioengineering and Biotechnology.2023;[Epub] CrossRef
- Deinococcus seoulensis sp. nov., a bacterium isolated from sediment at Han River in Seoul, Republic of Korea
-
Jae-Jin Lee , Yeon-Hee Lee , Su-Jin Park , Sangyong Lim , Sun-Wook Jeong , Seung-Yeol Lee , Young-Je Cho , Myung Kyum Kim , Hee-Young Jung
-
J. Microbiol. 2016;54(8):537-542. Published online August 2, 2016
-
DOI: https://doi.org/10.1007/s12275-016-6253-y
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1,036
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12
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Abstract
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Strain 16F1ET was isolated from a 3-kGy-irradiated sediment
sample collected at Han River in Seoul, Republic of Korea.
Cells of this strain were observed to be Gram-positive, pililike
structure, and short rod shape, and colonies were red in
color. The strain showed the highest degree of 16S rRNA gene
sequence similarity to Deinococcus aquaticus PB314T (98.8%),
Deinococcus depolymerans TDMA-24T (98.1%), Deinococcus
caeni Ho-08T (98.0%), and Deinococcus grandis DSM 3963T
(97.0%). 16S rRNA gene sequence analysis identified this
strain as a member of the genus Deinococcus (Family: Deinococcaceae).
The genomic DNA G+C content of strain 16F1ET
was 66.9 mol%. The low levels of DNA-DNA hybridization
(< 56.2%) with the species mentioned above identified strain
16F1ET as a novel Deinococcus species. Its oxidase and catalase
activities as well as the production of acid from glucose
were positive. Growth of the strain was observed at 10–37°C
(optimum: 20–30°C) and pH 4–10 (optimum: pH 7–8). The
cells tolerated less than 5% NaCl and had low resistance to
gamma radiation (D10 < 4 kGy). Strain 16F1ET possessed the
following chemotaxonomic characteristics: C16:0, C15:1 ω6c,
and C16:1 ω7c as the major fatty acids; phosphoglycolipid as
the predominant polar lipid; and menaquinone-8 as the predominant
respiratory isoprenoid quinone. Based on the polyphasic
evidence, as well as the phylogenetic, genotypic, phenotypic,
and chemotaxonomic characterization results, strain
16F1ET (=KCTC 33793T =JCM 31404T) is proposed to represent
the type strain of a novel species, Deinococcus seoulensis
sp. nov.
-
Citations
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Khaoula Bouznada, Rafika Saker, Hadj Ahmed Belaouni, Atika Meklat
Biologia.2026;[Epub] CrossRef - Comparative analysis of the gut microbiota of the wild nile tilapia (Oreochromis niloticus) across the seven reservoirs in Sri Lanka
W. M. Lakshani Anuradha Wanasinghe, Siliang Yuan, M. N. M. Fouzi, L. G. Sampath Lokugalappatti, Dongru Qiu
Scientific Reports.2026;[Epub] CrossRef - Insights into the radiation and oxidative stress mechanisms in genus Deinococcus
Nirjara Singhvi, Chandni Talwar, Shekhar Nagar, Helianthous Verma, Jasvinder Kaur, Nitish Kumar Mahato, Nabeel Ahmad, Krishnendu Mondal, Vipin Gupta, Rup Lal
Computational Biology and Chemistry.2024; 112: 108161. CrossRef -
Complete Genome Sequence of Deinococcus aquaticus Type Strain PB314, a Non-Extremophile Representative of the Genus
Deinococcus
Chad Albert, Jonathan Hill, Leilani Boren, Stacy Scholz-Ng, Nahid Fatema, Ryan Grosso, Erica Soboslay, James Tuohy, David A. Baltrus
Microbiology Resource Announcements.2023;[Epub] CrossRef -
Deinococcus betulae sp. nov. and Deinococcus arboris sp. nov., novel bacteria isolated from bark of birch tree (Betula platyphylla)
Seokhyeon Bae, Heeyoung Kang, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune
Ji Hee Lee, Jong-Hyun Jung, Min-Kyu Kim, Sangyong Lim
Current Microbiology.2022;[Epub] CrossRef - Microbial Monitoring in the EDEN ISS Greenhouse, a Mobile Test Facility in Antarctica
Jana Fahrion, Carina Fink, Paul Zabel, Daniel Schubert, Mohamed Mysara, Rob Van Houdt, Bernhard Eikmanns, Kristina Beblo-Vranesevic, Petra Rettberg
Frontiers in Microbiology.2020;[Epub] CrossRef -
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International Journal of Systematic and Evolutionary Microbiology
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Franck Carbonero, Alba Mayta, Mathilde Bolea, Jiang-Zhou Yu, Matt Lindeblad, Alex Lyubimov, Flavia Neri, Erzsebet Szilagyi, Brett Smith, Lisa Halliday, Amelia Bartholomew
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Qian Wang, Yali Song, Lina Choi, Hongyu Liu, Gejiao Wang, Mingshun Li
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Jae-Jin Lee, Yeon-Hee Lee, Su-Jin Park, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
Antonie van Leeuwenhoek.2017; 110(3): 407. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2016; 66(11): 4299. CrossRef
- Hymenobacter sedentarius sp. nov., isolated from a soil
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Jae-Jin Lee , Myung-Suk Kang , Eun Sun Joo , Hee-Young Jung , Myung Kyum Kim
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J. Microbiol. 2016;54(4):283-289. Published online April 1, 2016
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DOI: https://doi.org/10.1007/s12275-016-5386-3
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Abstract
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A novel Gram-negative and red-pinkish bacterium designated
DG5BT was isolated from a dry soil. Cells were rods that were
catalase- and oxidase-positive, and non-motile. The strain was
found to grow at temperatures from 10 to 30°C (optimum
25°C) and pH 6.0–8.0, (optimum pH 7) on R2A broth. 16S
rRNA gene sequence (1,452 bp) analysis of this strain identified
it as a member of the genus Hymenobacter that belongs
to the class Cytophagia. The highest gene sequence similarities
were with Hymenobacter arizonensis OR362-8T (98.3%),
Hymenobacter humi DG31AT (97.6%), and Hymenobacter
glaciei VUG-A130T (96.6%). Strain DG5BT exhibited <70%
DNA-DNA relatedness with H. arizonensis (34.7 ± 7.0%; reciprocally,
29.7 ± 1.2%) and H. humi (39.4 ± 4.3%; reciprocally,
39.5 ± 3.3%) as a different genomic species, and its
genomic DNA G+C content was 59.8%. Strain DG5BT had the
following chemotaxonomic characteristics: the major fatty
acids are iso-C15:0, anteiso-C15:0, C16:1 ω5c, and summed feature
3 (C16:1 ω7c / C16:1 ω6c); polar lipid profile contained phosphatidylethanolamine
(PE), unknown aminophospholipid
(APL), unknown glycolipids (GL), unknown phospholipids
(PL), and unknown polar lipids (L); the major quinone is MK-
7. The absorbance peak of pigment is at 481.0 nm. Strain
DG5BT showed low-level resistance to gamma-ray irradiation.
Phenotypic, chemotaxonomic, and genotypic properties
indicated that isolate DG5BT represents a novel species
within the genus Hymenobacter for which the name Hymenobacter
sedentarius sp. nov. is proposed. The type strain is
DG5BT (=KCTC 32524T =JCM 19636T).
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Citations
Citations to this article as recorded by - Three novel bacterial species isolated from plasma-treated soil: Hymenobacter plasmatis sp. nov., Flavitalea plasmicola sp. nov. and Mucilaginibacter tolerans sp. nov.
Seona Park, M. K. Kim, S. Srinivasan
Antonie van Leeuwenhoek.2026;[Epub] CrossRef -
Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Hymenobacter terricola sp. nov., isolated from Antarctic soil
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International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Hymenobacter siberiensis sp. nov., isolated from a marine sediment of the East Siberian Sea and Hymenobacter psoromatis sp. nov., isolated from an Antarctic lichen
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International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Hymenobacter properus sp. nov., Hymenobacter ruricola sp. nov., and Hymenobacter jeongseonensis sp. nov., three new species isolated from mountain and beach soil in South Korea
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International Journal of Systematic and Evolutionary Microbiology
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Myung Kyum Kim, Myung-Suk Kang, Sathiyaraj Srinivasan, Do Hee Lee, Seung-Yeol Lee, Hee-Young Jung
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Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
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- Spirosoma montaniterrae sp. nov., an ultraviolet and gamma radiation-resistant bacterium isolated from mountain soil
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Jae-Jin Lee , Myung-Suk Kang , Eun Sun Joo , Myung Kyum Kim , Wan-Taek Im , Hee-Young Jung , Sathiyaraj Srinivasan
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J. Microbiol. 2015;53(7):429-434. Published online June 27, 2015
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DOI: https://doi.org/10.1007/s12275-015-5008-5
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1,053
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3
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21
Crossref
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Abstract
PDF
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A Gram-negative, yellow-pigmented, long-rod shaped bacterial
strain designated DY10T was isolated from a soil sample
collected at Mt. Deogyusan, Jeonbuk province, South Korea.
Optimum growth observed at 30°C and pH 7. No growth was
observed above 1% (w/v) NaCl. Comparative 16S rRNA gene
sequence analysis showed that strain DY10T belonged to the
genus Spirosoma and was distantly related to Spirosoma arcticum
R2-35T (91.0%), Spirosoma lingual DSM 74T (90.8%),
Spirosoma endophyticum EX36T (90.7%), Spirosoma panaciterrae
DSM 21099T (90.5%), Spirosoma rigui WPCB118T
(90.2%), Spirosoma spitsbergense DSM 19989T (89.8%), Spirosoma
luteum DSM 19990T (89.6%), Spirosoma oryzae RHs22T
(89.6%), and Spirosoma radiotolerans DG5AT (89.1%). Strain
DY10T showed resistance to gamma and ultraviolet radiation.
The chemotaxonomic characteristics of strain DY10T were
consistent with those of the genus Spirosoma, with the quinone
system with MK-7 as the predominant menaquinone,
iso-C15:0, C16:1 ω5c, and summed feature3 (C16:1 ω7c/C16:1 ω6c),
and phosphatidylethanolamine as the major polar lipid. The
G+C content of the genomic DNA was 53.0 mol%. Differential
phenotypic properties with the closely related type
strains clearly distinguished strain DY10T from previously
described members of the genus Spirosoma and represents
a novel species in this genus, for which the name Spirosoma
montaniterrae sp. nov. is proposed. The type strain is DY10T
(=KCTC 23999T =KEMB 9004-162T =JCM 18492T).
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Citations
Citations to this article as recorded by - Complete Genome Sequence of Spirosoma sp. SC4-14 Isolated from the Rhizosphere of pepper (Capsicum annuum L.)
Jihye Jung, Dawon Jo, Myoungjoo Riu, Seongho Ahn, Do-Hyun Kim
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Ideonella oryzae sp. nov., isolated from soil, and Spirosoma liriopis sp. nov., isolated from fruits of Liriope platyphylla
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International Journal of Systematic and Evolutionary Microbiology
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Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
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Aharon Oren, George M Garrity
International Journal of Systematic and Evolutionary Microbiology
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- Bacterial Endophyte Sphingomonas sp. LK11 Produces Gibberellins and IAA and Promotes Tomato Plant Growth
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Abdul Latif Khan , Muhammad Waqas , Sang-Mo Kang , Ahmed Al-Harrasi , Javid Hussain , Ahmed Al-Rawahi , Salima Al-Khiziri , Ihsan Ullah , Liaqat Ali , Hee-Young Jung , In-Jung Lee
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J. Microbiol. 2014;52(8):689-695. Published online July 4, 2014
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DOI: https://doi.org/10.1007/s12275-014-4002-7
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3,634
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355
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Abstract
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Plant growth promoting endophytic bacteria have been identified as potential growth regulators of crops. Endophytic bacterium, Sphingomonas sp. LK11, was isolated from the leaves of Tephrosia apollinea. The pure culture of Sphingomonas sp. LK11 was subjected to advance chromatographic and spectroscopic techniques to extract and isolate gibberellins (GAs). Deuterated standards of [17, 17-2H2]-GA4,
[17, 17-2H2]-GA9 and [17, 17-2H2]-GA20 were used to quantify the bacterial GAs. The analysis of the culture broth of Sphingomonas sp. LK11 revealed the existence of physiologically active gibberellins (GA4: 2.97 ± 0.11 ng/ml) and inactive GA9 (0.98 ± 0.15 ng/ml) and GA20 (2.41 ± 0.23). The endophyte also produced indole acetic acid (11.23 ± 0.93 μM/ml). Tomato plants inoculated with endophytic Sphingomonas sp. LK11 showed significantly increased growth attributes
(shoot length, chlorophyll contents, shoot, and root dry weights) compared to the control. This indicated that such phyto-hormones-producing strains could help in increasing crop growth.
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Applied Soil Ecology.2024; 196: 105286. CrossRef - Alleviation of Drought Stress by Plant Growth-Promoting Rhizobacteria (PGPR) in Crop Plants: A Review
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Symbiosis.2024; 93(1): 29. CrossRef - Effect of Organic and Chemical Fertilizer on the Diversity of Rhizosphere and Leaf Microbial Composition in Sunflower Plant
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Biological Control.2024; 192: 105480. CrossRef - Rhizobacterial volatile organic compounds: Implications for agricultural ecosystems' nutrient cycling and soil health
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Science of The Total Environment.2024; 927: 171976. CrossRef - Integrative analysis of microbiome and metabolome revealed the effect of microbial inoculant on microbial community diversity and function in rhizospheric soil under tobacco monoculture
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Environmental Technology & Innovation.2024; 36: 103886. CrossRef - Unraveling the Role of Plant Growth Regulators and Plant Growth Promoting Rhizobacteria in Phytoremediation
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Frontiers in Microbiology.2024;[Epub] CrossRef - DESENVOLVIMENTO DE Urochloa ruziziensis SUBMETIDA À INOCULAÇÃO COM BACTÉRIAS PROMOTORAS DE CRESCIMENTO VEGETAL
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IOP Conference Series: Earth and Environmental Science.2024; 1357(1): 012015. CrossRef - Microbial Biofortification of Grain Crops: Current State and Prospects
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Indian Journal of Microbiology.2024; 64(2): 409. CrossRef - Exploring the root-associated microbiome of the resurrection plant Myrothamnus flabellifolia
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Plant and Soil.2024; 500(1-2): 53. CrossRef - Use of ginger extract and bacterial inoculants for the suppression of Alternaria solani causing early blight disease in Tomato
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BMC Plant Biology.2024;[Epub] CrossRef - The succession of rhizosphere microbial community in the continuous cropping soil of tobacco
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Frontiers in Environmental Science.2024;[Epub] CrossRef - Phytoremediation of Arsenic (As) in rice plants, mediated by strain IU31 through antioxidant responses and phytohormones synthesis
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Environmental Pollution.2024; 355: 124207. CrossRef - Effects of lactic acid bacteria and molasses on the fermentation quality, in vitro dry matter digestibility, and microbial community of Korshinsk peashrub (Caragana korshinskii Kom.) silages harvested at two growth stages
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Grass and Forage Science.2024; 79(1): 56. CrossRef - Integrated microbiome and metabolomics analysis reveal the relationship between plant-specialized metabolites and microbial community in Phellodendron amurense
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Frontiers in Plant Science.2024;[Epub] CrossRef - The potential of Actinoplanes spp. for alleviating the oxidative stress induced by thallium toxicity in wheat plants
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Plant Physiology and Biochemistry.2024; 213: 108853. CrossRef - Drought and salt stress mitigation in crop plants using stress-tolerant auxin-producing endophytic bacteria: a futuristic approach towards sustainable agriculture
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Frontiers in Plant Science.2024;[Epub] CrossRef - Prospects of Bacillus amyloliquefaciens (MZ945930) Mediated Enhancement of Capsicum annuum L. Plants Under Stress of Alternaria alternata in Terms of Physiological Traits, Thiol Content, Antioxidant Defense, and Phytohormones
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Scientific Reports.2024;[Epub] CrossRef - Neopolyploidy has variable effects on the diversity and composition of the wild strawberry microbiome
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American Journal of Botany.2024;[Epub] CrossRef - Bacterial community structure and co-occurrence networks in the rhizosphere and root endosphere of the grafted apple
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BMC Microbiology.2024;[Epub] CrossRef - Seeds of Stevia rebaudiana Bertoni as a Source of Plant Growth-Promoting Endophytic Bacteria with the Potential to Synthesize Rebaudioside A
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International Journal of Molecular Sciences.2023; 24(3): 2174. CrossRef - Effect of Arbuscular mycorrhizal fungi (AMF) inoculation on endophytic bacteria of lettuce
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Advances in Microbiology.2018; 08(09): 734. CrossRef - Isolation and Identification of Bacterial Endophytes from Grasses along the Oregon Coast
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