- Paenibacillus lycopersici sp. nov. and Paenibacillus rhizovicinus sp. nov., isolated from the rhizosphere of tomato (Solanum lycopersicum)
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Shin Ae Lee , Tae-Wan Kim , Mee-Kyung Sang , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2020;58(10):832-840. Published online September 29, 2020
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DOI: https://doi.org/10.1007/s12275-020-0258-2
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Two Gram-stain-positive, rod-shaped, endospore-forming
bacteria, designated 12200R-189T and 14171R-81T were isolated
from the rhizosphere of tomato plants. The 16S rRNA
gene sequence similarity between strains 12200R-189T and
14171R-81T were 97.2%. Both strains showed the highest 16S
rRNA gene sequence similarities to Paenibacillus sacheonensis
SY01T (96.3% and 98.0%, respectively). The genome of strain
12200R-189T was approximately 6.7 Mb in size with 5,750
protein-coding genes (CDSs) and the G + C content was 58.1
mol%, whereas that of strain 14171R-81T comprised one
chromosome of 7.0 Mb and two plasmids (0.2 Mb each) with
6,595 CDSs and the G + C content was 54.5 mol%. Comparative
genome analysis revealed that average nucleotide identity
(ANI) and digital DNA-DNA hybridization (dDDH) values
among 12200R-189T, 14171R-81T, and other closely related
species were below the cut-off levels 95% and 70%, respectively.
Strain 12200R-189T grew at a temperature range
of 15–40°C, pH 6.0–9.0, and 0–3% NaCl (w/v), whereas strain
14171R-81T grew at a temperature range of 10–37°C, pH 6.0–
8.0, and 0–1% NaCl (w/v). Menaquinone-7 (MK-7) was the
only isoprenoid quinone detected in both strains. The predominant
cellular fatty acids (> 10%) were iso-C15:0, anteiso-
C15:0, and iso-C16:0. The polar lipids of strain 12200R-
189T were diphosphatidylglycerol (DPG), phosphatidylglycerol
(PG), phosphatidylethanolamine (PE), aminophospholipid
(APL), phospholipid (PL), phosphatidylglycolipid (PGL),
and four aminophosphoglycolipids (APGLs) and those of
strain 14171R-81T were DPG, PG, PE, APL, three PLs, two
PGLs, and three APGLs. Based on phylogenetic, genomic,
phenotypic, and chemotaxonomic analyses, strains 12200R-
189T and 14171R-81T represent two novel species of the genus
Paenibacillus, for which the names Paenibacillus lycopersici
sp. nov. and Paenibacillus rhizovicinus sp. nov. are proposed.
The type strains are 12200R-189T (= KACC 19916T = CCTCC
AB 2020027T) and 14171R-81T (= KACC 19915T = CCTCC
AB 2020026T).
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Citations
Citations to this article as recorded by  - Validation List no. 229: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Description and genomic characterization of Jiella flava sp. nov., isolated from Acrostichum aureum
Ming-Sheng Chen, Xiu-Long Pu, Ming-Dan Weng, Li Chen, Lan-Ying Zhu, Li Tuo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Jiella sonneratiae sp. nov., a novel endophytic bacterium isolated from bark of Sonneratia apetala
Ming-Sheng Chen, Hai-Bo Yi, Zi-Hao Huang, Xiao-Rui Yan, Xiao-Hui Chen, Xiao Ma, Zhou-Qing Zheng, Li Tuo
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Paenibacillus vietnamensis sp. nov., isolated from the rhizosphere soil of Arachis hypogaea
Minh Hong Nguyen, Mai Thi Ngoc Dinh, Keun Chul Lee, Ji-Sun Kim, Thao Kim Nu Nguyen, Jung-Sook Lee
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Effect of exopolysaccharides of Paenibacillus polymyxa rhizobacteria on physiological and morphological variables of wheat seedlings
Irina V. Yegorenkova, Kristina V. Tregubova, Alexander I. Krasov, Nina V. Evseeva, Larisa Yu. Matora
Journal of Microbiology.2021; 59(8): 729. CrossRef
- Paraflavitalea soli gen. nov., sp. nov., isolated from greenhouse soil
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Jun Heo , Hang-Yeon Weon , Hayoung Cho , Seung-Beom Hong , Jeong-Seon Kim , Soo-Jin Kim , Soon-Wo Kwon
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J. Microbiol. 2020;58(1):17-23. Published online November 23, 2019
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DOI: https://doi.org/10.1007/s12275-020-9236-y
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1,063
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A bacterial strain designated 5GH32-13T was isolated from
greenhouse soil in Yongin-city, Republic of Korea. Cells were
Gram-stain-negative, strictly aerobic, motile rods of two different
shapes. The strain was catalase-positive and oxidasenegative.
Flexirubin-like pigments were not detected. β-Carotene
was produced. The strain grew in the range of 10–37°C
(optimum of 28–30°C) and pH 6–8 (optimum of pH 7) and
tolerated up to 1% (w/v) NaCl (optimum of 0%). According
to the 16S rRNA gene sequence comparison, strain 5GH32-
13T shared a sequence similarity of less than 96.0% with all
validly named taxa, having the highest sequence similarity
with Pseudoflavitalea soli KIS20-3T (95.8%), Pseudoflavitalea
rhizosphaerae T16R-265T (95.4%), Flavitalea gansuensis
JCN-23T (95.3%), Pseudobacter ginsenosidimutans Gsoil 221T
(95.3%), and Flavitalea populi HY-50RT (95.2%). A phylogenetic
tree showed that strain 5GH32-13T was not grouped
consistently into any specific genus. Its only polyamine was
homospermidine, and its major fatty acids (> 10% of total
fatty acids) were iso-C15:0, iso-C17:0 3-OH, and iso-C15:1 G. The
strain’s only respiratory quinone was MK-7, and its polar
lipids were phosphatidylethanolamine, one unidentified phospholipid,
six unidentified aminolipids and four unidentified
lipids. Its DNA G + C content was 47.5 mol%. The results
from chemotaxonomic, phenotypic and phylogenetic analyses
indicated that strain 5GH32-13T represents a novel species
of a novel genus of the family Chitinophagaceae, and the
name Paraflavitalea soli gen. nov., sp. nov. is proposed. The
type strain is 5GH32-13T (= KACC 17331T = JCM 33061T).
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Citations
Citations to this article as recorded by -
Methylobacterium endophyticum sp. nov. and Endoryza foliicola gen. nov., sp. nov., two novel endophytic bacterial species isolated from rice phyllosphere
Hui-Yuan Jiang, Guo-Hong Liu, Yuan-Jia Xu, Hao-Cheng Shen, Peng Gao, Shun-Gui Zhou
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Huijunlia imazamoxiresistens gen. nov., sp. nov., isolated from farmland represents a novel taxon within the family Chitinophagaceae
Enyi Wang, Jiale Ma, Shijie Xiang, Jian He, Zongzhuan Shen, Jiandong Jiang, Qirong Shen
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Polysaccharide utilization loci encoded DUF1735 likely functions as membrane‐bound spacer for carbohydrate active enzymes
Lisanne Hameleers, Lucie A. Gaenssle, Salvador Bertran‐Llorens, Tjaard Pijning, Edita Jurak
FEBS Open Bio.2024; 14(7): 1133. CrossRef - Paraflavitalea pollutisoli sp. nov., Pollutibacter soli gen. nov. sp. nov., Polluticoccus soli gen. nov. sp. nov., and Terrimonas pollutisoli sp. nov., four new members of the family Chitinophagaceae from polluted soil
Ze-Shen Liu, Xiao-Kang Wang, Ke-Huan Wang, Mei-Ling Yang, De-Feng Li, Shuang-Jiang Liu
Systematic and Applied Microbiology.2024; 47(2-3): 126503. CrossRef -
Paraflavisolibacter caeni gen. nov., sp. nov., a novel taxon within the family Chitinophagaceae isolated from sludge
Cansheng Yuan, Bin Liu, Lin Wang, Weihua Long, Zhuang Ke, Jian He
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Longitalea arenae gen. nov., sp. nov. and Longitalea luteola sp. nov., two new members of the family Chitinophagaceae isolated from desert soil
Shuai Li, Lei Dong, Jia-Rui Han, Guo-Yuan Shi, Chun-Yan Lu, Lu Xu, Wen-Hui Lian, Dalal Hussien M. Alkhalifah, Wael N. Hozzein, Wen-Jun Li
Archives of Microbiology.2022;[Epub] CrossRef - Optimizing the bacterial community structure and function in rhizosphere soil of sesame continuous cropping by the appropriate nitrate ammonium ratio
Ruiqing Wang, Zhihua Zhang, Fengjuan Lv, Hongxin Lin, Lingen Wei, Yunping Xiao
Rhizosphere.2022; 23: 100550. CrossRef -
Paraflavitalea devenefica sp. nov., isolated from urban soil
Xiaoxiao Hou, Hongliang Liu, Yumang Shang, Sidi Mao, Shucheng Li, Feng Sang, Hongkuan Deng, Lijuan Wang, Ling Kong, ChunYang Zhang, Zhongfeng Ding, Yan Gao, Shuzhen Wei, Zhiwei Chen
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 2960. CrossRef
- Paenibacillus nuruki sp. nov., isolated from Nuruk, a Korean fermentation starter
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Soo-Jin Kim , Hayoung Cho , Jae-Hyung Ahn , Hang-Yeon Weon , Jae-Ho Joa , Jeong-Seon Kim , Soon-Wo Kwon
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J. Microbiol. 2019;57(10):836-841. Published online June 27, 2019
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DOI: https://doi.org/10.1007/s12275-019-9118-3
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1,077
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6
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Abstract
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A Gram-stain-positive, rod-shaped, non-endospore-forming,
motile by means of peritrichous flagella, facultatively anaerobic
bacterium designated TI45-13arT was isolated from Nuruk,
a Korean traditional Makgeolli fermentation starter. It grew
at 4–35°C (optimum, 28–30°C), pH 5.0–9.0 (optimum, pH
7.0) and NaCl concentrations up to 5% (w/v). Phylogenetic
trees generated using 16S rRNA gene sequences revealed that
strain TI45-13arT belonged to the genus Paenibacillus and
showed the highest sequence similarities with Paenibacillus
kyungheensis DCY88T (98.5%), Paenibacillus hordei RH-N24T
(98.4%) and Paenibacillus nicotianae YIM h-19T (98.1%). The
major fatty acid was anteiso-C15:0. The DNA G+C content
was 39.0 mol%, and MK-7 was the predominant isoprenoid
quinone. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol,
phosphatidylethanolamine, three unidentified
glycolipids, and one unidentified aminoglycolipid. The
cell-wall peptidoglycan contained meso-diaminopimelic acid.
On the basis of polyphasic taxonomy study, it was suggested
that strain TI45-13arT represents a novel species within the genus
Paenibacillus for which the name Paenibacillus nuruki
sp. nov. is proposed. The type strain was TI45-13arT (= KACC
18728T = NBRC 112013T).
-
Citations
Citations to this article as recorded by - Anti-aging potential of the endophyte Paenibacillus nuruki in a Saccharomyces cerevisiae lifespan model
Yancho Zarev, Ivan Ivanov, Martin Dimitrov, Iliana Ionkova, Teodora Todorova
Pharmacia.2026;[Epub] CrossRef - Metagenomic and meta-metabolomic analysis of traditional Korean rice vinegar productions shows a large variability between producers
Louise Vermote, Byung Hee Chun, Shehzad Abid Khan, Luc De Vuyst, Che Ok Jeon, Stefan Weckx
International Journal of Food Microbiology.2025; 440: 111283. CrossRef -
Paenibacillus dendrobii sp. nov., an indole-3-acetic acid-producing endophytic bacterium isolated from Dendrobium nobile
Yadong Hu, Hongjie Li, Yaoyi Chen, Qiling Zhang, Shigang Zheng, Dan Rao, Ze Chun, Ruoxi Zhao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Makgeolli - The Traditional Choice of Korean Fermented Beverage from Cereal: An Overview on its Composition and Health Benefits
Ganesh SHIMOGA, Sang-Youn KIM
Food Science and Technology.2022;[Epub] CrossRef - Integrative Metagenomics–Metabolomics for Analyzing the Relationship Between Microorganisms and Non-volatile Profiles of Traditional Xiaoqu
Chi Zhao, Wei Su, Yu Mu, Yingchun Mu, Li Jiang
Frontiers in Microbiology.2021;[Epub] CrossRef - Flaviflexus ciconiae sp. nov., isolated from the faeces of the oriental stork, Ciconia boyciana
Jae-Yun Lee, Woorim Kang, Pil Soo Kim, So-Yeon Lee, Na-Ri Shin, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Yun-Seok Jeong, Jeong Eun Han, Mi-Ja Jung, Dong-Wook Hyun, Hyun Sik Kim, Euon Jung Tak, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5439. CrossRef
- Chryseolinea soli sp. nov., isolated from soil
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Shin Ae Lee , Yiseul Kim , Mee-Kyung Sang , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2019;57(2):122-126. Published online January 31, 2019
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DOI: https://doi.org/10.1007/s12275-019-8562-4
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1,204
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A yellow-colored bacterium with gliding motility, strain
KIS68-18T, was isolated from a soil sample at Bijin Island in
Tongyeong city, Republic of Korea. The cells were strictly
aerobic, Gram-staining-negative, non-spore-forming, and
rod-shaped. The strain grew at the range of 10–35°C
(optimum, 25–30°C), pH 5.5–8.0 (optimum, 6.0–7.5), and
0–0.5% (w/v) NaCl. A phylogenetic analysis based on 16S
rRNA gene sequences revealed that strain KIS68-18T was
closely related to Chryseolinea serpens DSM 24574T (98.9%)
and had low sequence similarities (below 92.6%) with other
members of the family ‘Cytophagaceae’ in the phylum
Bacteroidetes. The major respiratory quinone system was
MK-7 and the predominant cellular fatty acids were C16:1
ω5c (38.8%), iso-C15:0 (18.5%), and summed feature 3 (C16:1
ω7c and/or C16:1 ω6c, 10.6%). The polar lipids consisted of
phosphatidylethanolamine, one unidentified phospholipid,
three unidentified aminophospholipids, two unidentified
aminolipids, and five unidentified lipids. The DNA G + C
content was 50.9%. Based on the phylogenetic, physiological,
and chemotaxonomic data, stain KIS68-18T represents
a novel species of the genus Chryseolinea, for which
the name Chryseolinea soli sp. nov. is proposed. The type
strain of Chryseolinea soli is KIS68-18T (= KACC 17327T =
NBRC 113100T).
-
Citations
Citations to this article as recorded by - Rhizosphere bacteriome assemblage following initial fluctuations is delayed with nitrogen additions in tomato seedlings
Mary M. Dixon, Carley R. Rohrbaugh, Daniel K. Manter, Jorge A. Delgado, Jorge M. Vivanco
Biology and Fertility of Soils.2025; 61(2): 233. CrossRef - Assessment of temperature dynamics during methane oxidation in a pilot scale compost biofilter
Tania L. Gómez-Borraz, Yuly Vanessa Torres-Arévalo, Yovany Cuetero-Martínez, Armando González-Sánchez, Adalberto Noyola
Bioresource Technology.2025; 419: 132097. CrossRef - Microbiome re-assembly enhances manganese and ammonium co-removal in sand biofilters
Xin Zhao, Xuan Zhou, Bo Sun, Chuanjun Dai, Qing Guo, Dezhao Liu, Xiangyong Zheng, Min Zhao
Separation and Purification Technology.2025; 369: 132902. CrossRef - Solid vermicompost and its liquid derivative exhibit strong biocontrol properties against Myzus persicae aphids on sweet pepper
Mey Jerbi-Elayed, Stefan Brandl, Grégory Sempo, John Riviere, Deborah Lanterbecq, Marie Annet, Leidy Grawez Demoulin, Muriel Quinet, Stanley Lutts, Thierry Hance, François Renoz
Journal of Pest Science.2025; 98(4): 2265. CrossRef - Validation list no. 225: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Poultry litter biochar soil amendment affects microbial community structures, promotes phosphorus cycling and growth of barley (Hordeum vulgare)
Lea Deinert, Shakhawat Hossen, Israel Ikoyi, Witold Kwapinksi, Matthias Noll, Achim Schmalenberger
European Journal of Soil Biology.2024; 120: 103591. CrossRef - Uptake and Metabolic Conversion of Exogenous Phosphatidylcholines Depending on Their Acyl Chain Structure in Arabidopsis thaliana
Ekaterina R. Kotlova, Svetlana V. Senik, Gregory A. Pozhvanov, Ilya A. Prokopiev, Ivan A. Boldyrev, Bairta S. Manzhieva, Ekaterina Ya. Amigud, Roman K. Puzanskiy, Anna A. Khakulova, Evgeny B. Serebryakov
International Journal of Molecular Sciences.2023; 25(1): 89. CrossRef - A nostoxanthin-producing bacterium, Sphingomonas nostoxanthinifaciens sp. nov., alleviates the salt stress of Arabidopsis seedlings by scavenging of reactive oxygen species
Lingmin Jiang, Jiyoon Seo, Yuxin Peng, Doeun Jeon, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2023;[Epub] CrossRef - Simulatenous evaluation of composting experiments and metagenome analyses to illuminate the effect of Streptomyces spp. on organic matter degradation
Fadime Ozdemir Kocak, Saadet Gizem Ertekin Tanir, Ayten Kumas Cetin, Levent Degirmenci
World Journal of Microbiology and Biotechnology.2023;[Epub] CrossRef - Sphingomonas abietis sp. nov., an Endophytic Bacterium Isolated from Korean Fir
Lingmin Jiang, Hanna Choe, Yuxin Peng, Doeun Jeon, Donghyun Cho, Yue Jiang, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
Journal of Microbiology and Biotechnology.2023; 33(10): 1292. CrossRef - The Effect of Long-Term Agricultural Use on the Bacterial Microbiota of Chernozems of the Forest-Steppe Zone
Konstantin S. Boyarshin, Valeria V. Adamova, Zheng Wentao, Olga Y. Obuhova, Marina V. Kolkova, Vitaliy A. Nesterenko, Olga S. Bespalova, Violetta V. Kluyeva, Kristina A. Degtyareva, Yulia N. Kurkina, Olesia A. Makanina, Irina V. Batlutskaya
Diversity.2023; 15(2): 191. CrossRef - Chryseolinea lacunae sp. nov. and Piscinibacter lacus sp. nov. Isolated from Artificial Pond Water
Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Yoonseop So, Taegun Seo
Current Microbiology.2023;[Epub] CrossRef - Impact of sheep wool residues as soil amendments on olive beneficial symbionts and bacterial diversity
Michela Palla, Alessandra Turrini, Caterina Cristani, Laura Bonora, David Pellegrini, Jacopo Primicerio, Arianna Grassi, Filip Hilaj, Manuela Giovannetti, Monica Agnolucci
Bioresources and Bioprocessing.2022;[Epub] CrossRef -
Parachryseolinea silvisoli gen. nov., sp. nov., isolated from forest soil, and reclassification of Chryseolinea flava as Pseudochryseolinea flava gen. nov., comb. nov.
Chunling Wang, Yingying Lv, Anzhang Li, Qing Yao, Honghui Zhu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Draft Genome Sequence of
Cytophagales
sp. Strain WSM2-2, Isolated from Garden Soil
Masataka Aoki, Mamoru Oshiki, Mizuki Iwagaki, Masashi Hatamoto, Takashi Yamaguchi, Nobuo Araki, J. Cameron Thrash
Microbiology Resource Announcements.2021;[Epub] CrossRef - Effects of Different Continuous Cropping Years on Bacterial Community and Diversity of Cucumber Rhizosphere Soil in Solar-Greenhouse
Yang Li, Jingliang Chi, Jing Ao, Xiaomei Gao, Xiaohui Liu, Yulu Sun, Weiwei Zhu
Current Microbiology.2021; 78(6): 2380. CrossRef - Pyomelanin-Producing Brevundimonas vitisensis sp. nov., Isolated From Grape (Vitis vinifera L.)
Lingmin Jiang, Doeun Jeon, Jueun Kim, Chul Won Lee, Yuxin Peng, Jiyoon Seo, Ju Huck Lee, Jin Hyub Paik, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2021;[Epub] CrossRef - Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds
Lingmin Jiang, Chan Ju Lim, Song-Gun Kim, Jae Cheol Jeong, Cha Young Kim, Dae-Hyuk Kim, Suk Weon Kim, Jiyoung Lee
Journal of Microbiology.2020; 58(1): 24. CrossRef - Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory
Lingmin Jiang, Dexin Wang, Jung-Sook Lee, Dae-Hyuk Kim, Jae Cheol Jeong, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
Journal of Microbiology.2020; 58(5): 357. CrossRef -
Neobacillus endophyticus sp. nov., an endophytic bacterium isolated from Selaginella involvens roots
Lingmin Jiang, Myoung Hui Lee, Jae Cheol Jeong, Dae-Hyuk Kim, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
- Effects of diet type, developmental stage, and gut compartment in the gut bacterial communities of two Cerambycidae species (Coleoptera)
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Jeong Myeong Kim , Min-Young Choi , Jae-Woo Kim , Shin Ae Lee , Jae-Hyung Ahn , Jaekyeong Song , Seong-Hyun Kim , Hang-Yeon Weon
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J. Microbiol. 2017;55(1):21-30. Published online December 30, 2016
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DOI: https://doi.org/10.1007/s12275-017-6561-x
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1,062
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64
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The gut bacterial community of wood-feeding beetles has
been examined for its role on plant digestion and biocontrol
method
development. Monochamus alternatus and Psacothea
hilaris, both belonging to the subfamily Lamiinae, are woodfeeding
beetles found in eastern Asia and Europe and generally
considered as destructive pests for pine and mulberry
trees, respectively. However, limited reports exist on the gut
bacterial communities in these species. Here, we characterized
gut bacterial community compositions in larva and imago of
each insect species reared with host tree logs and artificial
diets as food sources. High-throughput 454 pyrosequencing
of bacterial 16S rRNA gene revealed 225 operational taxonomic
units (OTUs) based on a 97% sequences similarity cutoff
from 138,279 sequence reads, the majority of which were
derived from Proteobacteria (48.2%), Firmicutes (45.5%), and
Actinobacteria (5.2%). The OTU network analysis revealed
7 modules with densely connected OTUs in specific gut samples,
in which the distributions of Lactococcus-, Kluyvera-,
Serratia-, and Enterococcus-related OTUs were distinct between
diet types or developmental stages of the host insects.
The gut bacterial communities were separated on a detrended
correspondence analysis (DCA) plot and by c-means fuzzy
clustering analysis, according to diet type. The results from
this study suggest that diet was the main determinant for gut
bacterial community composition in the two beetles.
-
Citations
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Huanhuan Li, Liancheng Liu, Gonghua Lin, Fang Zhao, Rujiao Sun, Bo He, Zuhao Huang
Biology.2026; 15(4): 314. CrossRef - Dietary Specialisation Shapes Gut Bacterial Diversity in Dung Beetles: Insights From Coprophagy to Millipede Carnivory
Johann C. de Beer, Kazeem A. Alayande, Christian W. W. Pirk, Rasheed A. Adeleke, Catherine L. Sole
Environmental Microbiology Reports.2026;[Epub] CrossRef - Metagenomic insights into diet-mediated gut microbial plasticity and functional adaptations in the tobacco beetle Lasioderma serricorne (Coleoptera: Ptinidae)
Junaid Zafar, Shuhao Zhang, Zhanpeng Zhu, Ziling Wan, Yanqing Li, Ang Li, Ling Huang, Xuewei Zhang, Chen Peng, Shuai Zhong, Fengliang Jin, Xiaoxia Xu
Journal of Stored Products Research.2026; 116: 102931. CrossRef - Host genetics and environment shape the gut microbiome of Euschistus heros and Piezodorus guildinii and potentially influencing their adaptation
Matheus Sartori Moro, Thiago Deomar Ludwig, Matheus Scaketti, Ana Flávia Francisconi, Lucas William Mendes, José Baldin Pinheiro, Maria Imaculada Zucchi
Frontiers in Microbiology.2026;[Epub] CrossRef - Composition and Diversity Characteristics of Gut Microbiota during the Development of Telchinia issoria (Lepidoptera: Nymphalidae)
Xin Yang, Liu liu Dong, Xiao xiao Jin, Xu jie Liu, Min Gao, Jie Fang
Ecology and Evolution.2026;[Epub] CrossRef - Microbial allies in a cotton pest: A descriptive account of associated microbiota dynamics in Dysdercus cingulatus across development
Rupawate Pravara, Roylawar Praveen, Borgave Seema
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics.2026; 60: 101902. CrossRef - Structure of the Gut and Ovary, with Associated Microbiota Across Life Stages in the Striped Stem Borer Chilo suppressalis (Lepidoptera: Crambidae)
Haiying Zhong, Fang Li, Kaili Yu, Juefeng Zhang
Insects.2026; 17(7): 682. CrossRef - An Analysis of the Gut Microbiota of Fifth-Instar Antheraea Pernyi Larvae and a Functional Exploration of a Bacillus Subtilis Strain
Xin Xu, Yaxin Gao, Shuanghui Ren, Zhongwen Liu, Yongjun Zhang, Zhen Zhang, Yanxian Lian, Xuwei Zhu
Insects.2025; 16(4): 333. CrossRef - Microbiome of different gut compartments of banana pseudostem weevil Odoiporus longicollis (Coleoptera: Curculionidae) offers an understanding of site-specific diversity and metabolism: Whole-metagenome shotgun sequencing approach
Sreeramulu Bhuvaragavan, Kannan Sruthi, Akshaya Panigrahi, Sundaram Janarthanan
Ecological Genetics and Genomics.2025; 36: 100397. CrossRef - Diversity and Metabolic Potential of Gut Bacteria in Dorcus hopei (Coleoptera: Lucanidae): Influence of Fungus and Rotten Wood Diets
Pan Wang, Xiaoyan Bin, Xingjia Xiang, Xia Wan
Microorganisms.2025; 13(7): 1692. CrossRef - Isolation and Characterization of Cultivable Microbes from the Gut of Zophobas atratus (Coleoptera: Tenebrionidae) Larvae Reared on Two Types of Artificial Diets
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- Soil pH and electrical conductivity are key edaphic factors shaping bacterial communities of greenhouse soils in Korea
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Jeong Myeong Kim , An-Sung Roh , Seung-Chul Choi , Eun-Jeong Kim , Moon-Tae Choi , Byung-Koo Ahn , Sun-Kuk Kim , Young-Han Lee , Jae-Ho Joa , Seong-Soo Kang , Shin Ae Lee , Jae-Hyung Ahn , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2016;54(12):838-845. Published online November 26, 2016
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DOI: https://doi.org/10.1007/s12275-016-6526-5
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Abstract
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Soil microorganisms play an essential role in soil ecosystem
processes such as organic matter decomposition, nutrient
cycling, and plant nutrient availability. The land use for greenhouse
cultivation has been increasing continuously, which
involves an intensive input of agricultural materials to enhance
productivity; however, relatively little is known about
bacterial communities in greenhouse soils. To assess the effects
of environmental factors on the soil bacterial diversity
and community composition, a total of 187 greenhouse soil
samples collected across Korea were subjected to bacterial
16S rRNA gene pyrosequencing analysis. A total of 11,865
operational taxonomic units at a 97% similarity cutoff level
were detected from 847,560 sequences. Among nine soil factors
evaluated; pH, electrical conductivity (EC), exchangeable
cations (Ca2+, Mg2+, Na+, and K+), available P2O5, organic
matter, and NO3-N, soil pH was most strongly correlated
with bacterial richness (polynomial regression, pH: R2 =
0.1683, P < 0.001) and diversity (pH: R2 = 0.1765, P < 0.001).
Community dissimilarities (Bray-Curtis distance) were positively
correlated with Euclidean distance for pH and EC
(Mantel test, pH: r = 0.2672, P < 0.001; EC: r = 0.1473, P < 0.001). Among dominant phyla (> 1%), the relative abundances
of Proteobacteria, Gemmatimonadetes, Acidobacteria,
Bacteroidetes, Chloroflexi, and Planctomycetes were also more
strongly correlated with pH and EC values, compared with
other soil cation contents, such as Ca2+, Mg2+, Na+, and K+.
Our results suggest that, despite the heterogeneity of various
environmental variables, the bacterial communities of
the intensively cultivated greenhouse soils were particularly
influenced by soil pH and EC. These findings therefore shed
light on the soil microbial ecology of greenhouse cultivation,
which should be helpful for devising effective management
strategies to enhance soil microbial diversity and improving
crop productivity.
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Journal of Environmental Management.2024; 351: 119688. CrossRef - Alpine wetlands degradation leads to soil nutrient imbalances that affect plant growth and microbial diversity
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Journal of Environmental Management.2024; 372: 123148. CrossRef - Effects of reductive soil disinfestation combined with different types of organic materials on the microbial community and functions
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Science of The Total Environment.2024; 954: 176302. CrossRef - Contrasting responses of α- and β-multifunctionality to aboveground plant community in the Qinghai-Tibet Plateau
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Science of The Total Environment.2024; 917: 170464. CrossRef - Vermicompost Supply Enhances Fragrant-Rice Yield by Improving Soil Fertility and Eukaryotic Microbial Community Composition under Environmental Stress Conditions
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Microorganisms.2024; 12(6): 1252. CrossRef - Substation of vermicompost mitigates Cd toxicity, improves rice yields and restores bacterial community in a Cd-contaminated soil in Southern China
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Journal of Hazardous Materials.2024; 465: 133118. CrossRef - Assembly of root-associated bacterial community and soil health in cadmium-contaminated soil affected by nano/bulk-biochar compost associations
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Environmental Pollution.2024; 360: 124619. CrossRef - Unravelling the influence of microplastics with/without additives on radish (Raphanus sativus) and microbiota in two agricultural soils differing in pH
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Journal of Hazardous Materials.2024; 478: 135535. CrossRef - Unveiling soil bacterial ecosystems in andean citrus orchards of Santander, Colombia
Genis Andrés Castillo-Villamizar, Valentina Tapia-Perdomo, Julieth Maldonado-Pava, Pedro Santamaría-Gálvis, Lizbeth Sayavedra, Jorge Hernandez-Torres, Edinson Puentes-Cala
Frontiers in Ecology and Evolution.2024;[Epub] CrossRef - Analysis of microbial communities in wheat, alfalfa, and oat crops after Tilletia laevis Kühn infection
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Frontiers in Microbiology.2024;[Epub] CrossRef - Uptake and translocation of fungicide picarbutrazox in greenhouse cabbage: the significance of translocation factors and home processing
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Environmental Science and Pollution Research.2023; 30(14): 40919. CrossRef - Limitations of biofertilizers and their revitalization through nanotechnology
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Journal of Cleaner Production.2023; 418: 138194. CrossRef - New interactive functional indicator approach for river health assessment in an Asian temperate river: Comprehensive analysis of water chemistry, physical habitat, land use, and the biological disturbance of invasive alien species
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Ecological Indicators.2023; 157: 111212. CrossRef - Response of the Soil Fungal Community and Its Function during the Conversion of Forestland to Tea Plantations: A Case Study in Southeast China
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Forests.2023; 14(2): 209. CrossRef - Differences in bacterial community composition, structure and function between sediments in waterways and non-navigable channels in a plain river network area
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Microbial Ecology.2023; 86(4): 3027. CrossRef - Predicting microbial responses to changes in soil physical and chemical properties under different land management
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Applied Soil Ecology.2023; 188: 104878. CrossRef - Bacterial and archaeal communities in saline soils from a Los Negritos geothermal area in Mexico
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Pedosphere.2023; 33(2): 312. CrossRef - Heavy Metal Distribution and Microbial Diversity of the Surrounding Soil and Tailings of Two Cu Mines in China
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Water, Air, & Soil Pollution.2023;[Epub] CrossRef - Phosphorus addition modifies the bacterial community structure in rhizosphere of Achnatherum inebrians by influencing the soil properties and modulates the Epichloë gansuensis-mediated root exudate profiles
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Plant and Soil.2023; 491(1-2): 543. CrossRef - Effects of 13C isotope-labeled allelochemicals on the growth of the invasive plant Alternanthera philoxeroides
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Scientific Reports.2023;[Epub] CrossRef - Development of rapid and precise approach for quantification of bacterial taxa correlated with soil health
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Frontiers in Microbiology.2023;[Epub] CrossRef - Plant ash prevents acid mine drainage from sulfur-bearing tailings through multiple actions — A low-cost alkaline material
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Applied Geochemistry.2023; 155: 105702. CrossRef - Natural restoration alters soil microbial community structure, but has contrasting effects on the diversity of bacterial and fungal assemblages in salinized grasslands
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Science of The Total Environment.2023; 891: 164726. CrossRef - Spatial controls of methane uptake in upland soils across climatic and geological regions in Greenland
Ludovica D’Imperio, Bing-Bing Li, James M. Tiedje, Youmi Oh, Jesper Riis Christiansen, Sebastian Kepfer-Rojas, Andreas Westergaard-Nielsen, Kristian Koefoed Brandt, Peter E. Holm, Peiyan Wang, Per Ambus, Bo Elberling
Communications Earth & Environment.2023;[Epub] CrossRef - Comparative Analysis of Microbial Community Characteristic of Acidic and Neutral Soils in Korean Orchards
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Chemosphere.2023; 313: 137501. CrossRef - Soil Bacterial Community Structure and Physicochemical Influencing Factors of Artificial Haloxylon ammodendron Forest in the Sand Blocking and Fixing Belt of Minqin, China
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Forests.2023; 14(11): 2244. CrossRef - Relationships between Rhizosphere Environments and Growth of 10-Year-Old Wild-Simulated Ginseng
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Agronomy.2023; 13(5): 1313. CrossRef - Effect comparisons of different conditioners and microbial agents on the degradation of estrogens during dairy manure composting
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Chemosphere.2023; 345: 140312. CrossRef - Effects of continuous cropping Jiashi muskmelon on rhizosphere microbial community
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Frontiers in Microbiology.2023;[Epub] CrossRef - Does biochar addition improve soil physicochemical properties, bacterial community and alfalfa growth for saline soils?
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Agronomy.2023; 13(12): 2984. CrossRef - Evaluation of a subtropical maize-rice rotation system maintained under long-term fertilizer inputs for sustainable intensification of agriculture
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Applied Soil Ecology.2023; 184: 104772. CrossRef - Metagenomic analysis displays the potential predictive biodegradation pathways of the persistent pesticides in agricultural soil with a long record of pesticide usage
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Microbiological Research.2022; 261: 127081. CrossRef - Soil microbial community responses to the application of a combined amendment in a historical zinc smelting area
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Land Degradation & Development.2022; 33(1): 117. CrossRef - Selective Enrichment Method for Isolation of Efficient Phosphate Solubilizing Bacteria from Soil
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Communications in Soil Science and Plant Analysis.2022; 53(12): 1532. CrossRef - Impact of hexachlorocyclohexane addition on the composition and potential functions of the bacterial community in red and purple paddy soil
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Environmental Pollution.2022; 297: 118795. CrossRef - Remediation of Cd-, Pb-, Cu-, and Zn-contaminated soil using cow bone meal and oyster shell meal
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CATENA.2022; 209: 105828. CrossRef - Metagenomic analysis of bacterial communities of Wadi Namar Lake, Riyadh, Saudi Arabia
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Journal of Environmental Management.2022; 305: 114400. CrossRef - Antibiotic resistance genes alternation in soils modified with neutral and alkaline salts: interplay of salinity stress and response strategies of microbes
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Scientific Reports.2022;[Epub] CrossRef - Influence of Rosaceous Species and Driving Factors on Differentiation of Rhizospheric Bacteria in a Deciduous Broad-Leaved Forest
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Current Microbiology.2022;[Epub] CrossRef - The Deterioration of Agronomical Traits of the Continuous Cropping of Stevia Is Associated With the Dynamics of Soil Bacterial Community
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Journal of Hazardous Materials.2022; 423: 127042. CrossRef - Assessment of Fertilizer Quality in Horse Waste-Based Bokashi Fertilizer Formulations
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Agronomy.2022; 12(4): 937. CrossRef - Effects of earthworms and arbuscular mycorrhizal fungi on improvement of fertility and microbial communities of soils heavily polluted by cadmium
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Chemosphere.2022; 286: 131567. CrossRef - Bacterial Community with Plant Growth-Promoting Potential Associated to Pioneer Plants from an Active Mexican Volcanic Complex
Clara Ivette Rincón-Molina, Esperanza Martínez-Romero, José Luis Aguirre-Noyola, Luis Alberto Manzano-Gómez, Adalberto Zenteno-Rojas, Marco Antonio Rogel, Francisco Alexander Rincón-Molina, Víctor Manuel Ruíz-Valdiviezo, Reiner Rincón-Rosales
Microorganisms.2022; 10(8): 1568. CrossRef - Influences of land reclamation on soil bacterial communities of abandoned salt pans in the Yellow River Delta
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Land Degradation & Development.2022; 33(16): 3231. CrossRef - Physico-Chemical and microbiological analysis of the loopspruit river, north west province: A metagenomic approach
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Water Supply.2022;[Epub] CrossRef - Long-Term Effect of Alkali and Partially Neutralized Irrigation Water on Soil Quality
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Journal of Soil Science and Plant Nutrition.2022; 22(2): 1252. CrossRef - Impacts of disinfected wastewater irrigation on soil characteristics, microbial community composition, and crop yield
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Blue-Green Systems.2022; 4(2): 247. CrossRef - Reduced Chemical Fertilizer Combined With Bio-Organic Fertilizer Affects the Soil Microbial Community and Yield and Quality of Lettuce
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Frontiers in Microbiology.2022;[Epub] CrossRef - Optimization of carriers and packaging for effective biofertilizers to enhance Oryza sativa L. growth in paddy soil
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Rhizosphere.2021; 19: 100383. CrossRef - Improved immobilization of soil cadmium by regulating soil characteristics and microbial community through reductive soil disinfestation
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Science of The Total Environment.2021; 778: 146222. CrossRef - Soil bacterial community functions and distribution after mining disturbance
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Soil Biology and Biochemistry.2021; 157: 108232. CrossRef - Pilot Study of Eco-Physiological Pepper Responses to Starfish-Based Organic Soil Amendments in Open-Field and Greenhouse Cultivations
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Horticulturae.2021; 7(10): 344. CrossRef - Effects of the Denitrification Inhibitor “Procyanidins” on the Diversity, Interactions, and Potential Functions of Rhizosphere-Associated Microbiome
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Microorganisms.2021; 9(7): 1406. CrossRef - Prospective usage of magnesium potassium phosphate cement combined with Bougainvillea alba derived biochar to reduce Pb bioavailability in soil and its uptake by Spinacia oleracea L
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Ecotoxicology and Environmental Safety.2021; 208: 111723. CrossRef - Impacto ambiental del vertimiento de aguas servidas en aglomerados urbanos ilegales del municipio de Villavicencio, Colombia
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Tecnura.2021; 25(68): 43. CrossRef - Efficacy of chitosan-coated textile waste biochar applied to Cd-polluted soil for reducing Cd mobility in soil and its distribution in moringa (Moringa oleifera L.)
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Journal of Environmental Management.2021; 284: 112047. CrossRef - The effects of vermicompost and shell powder addition on Cd bioavailability, enzyme activity and bacterial community in Cd-contaminated soil: A field study
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Ecotoxicology and Environmental Safety.2021; 215: 112163. CrossRef - Diversity, structure, and composition of plant growth-promoting bacteria in soil from Brazilian Cerrado
Jailson do Nascimento Silva, Lucas William Mendes, Jadson Emanuel Lopes Antunes, Vania Maria Maciel Melo, Francisca Andrea da Silva Oliveira, Angela Celis de Almeida Lopes, Veronica Brito da Silva, Arthur Prudêncio de Araujo Pereira, Sergio Emilio Santos
Rhizosphere.2021; 20: 100435. CrossRef - Bioaccumulation of heavy metals in Stachys inflata and Scariola orientalis affected by particulate matters of a cement factory in central Iran
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Environmental Science and Pollution Research.2021; 28(32): 44098. CrossRef - Changes in rhizosphere microbial diversity and composition due to NaCl addition to the soil modify the outcome of maize-weed interactions
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Frontiers in Microbiology.2021;[Epub] CrossRef - Farmer Friendly Options for Sterilizing Farm Tools for the Control of Xanthomonas Wilt Disease of Banana
Walter Ocimati, Anthony Fredrick Tazuba, Guy Blomme
Frontiers in Agronomy.2021;[Epub] CrossRef - Green Fluorescent Protein-Tagged Bacillus axarquiensis TUBP1 Reduced Cotton Verticillium Wilt Incidence by Altering Soil Rhizosphere Microbial Communities
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Current Microbiology.2021; 78(9): 3562. CrossRef - Effect of Bacillus mesonae H20-5 Treatment on Rhizospheric Bacterial Community of Tomato Plants under Salinity Stress
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The Plant Pathology Journal.2021; 37(6): 662. CrossRef - Study on the Rhizosphere Soil Microbial Community Structure Associated with Five Land Use Types in Jinchuan Mining Area
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E3S Web of Conferences.2021; 237: 01010. CrossRef - Chemical fertilizer reduction with organic fertilizer effectively improve soil fertility and microbial community from newly cultivated land in the Loess Plateau of China
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Applied Soil Ecology.2021; 165: 103966. CrossRef - Rhizosphere Microbiome Regulates the Growth of Mustard under Organic Greenhouse Cultivation
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Agriculture.2021; 11(10): 987. CrossRef - Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
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BMC Microbiology.2021;[Epub] CrossRef - Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil
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Scientific Reports.2021;[Epub] CrossRef - Effects of an additive (hydroxyapatite–bentonite–biochar) on Cd and Pb stabilization and microbial community composition in contaminated vegetable soil
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RSC Advances.2021; 11(20): 12200. CrossRef - The effect of Soil properties on the Biological Diversity of Fungi in Soil University of Anbar.
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Journal of Physics: Conference Series.2021; 2114(1): 012068. CrossRef - Effects of continuous cropping of Pinellia ternata (Thunb.) Breit. on soil physicochemical properties, enzyme activities, microbial communities and functional genes
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Chemical and Biological Technologies in Agriculture.2021;[Epub] CrossRef - Effects of microbial bio-fertilizers on soil physicochemical properties under different soil water regimes in greenhouse grown eggplant (Solanum Melongena L.)
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Communications in Soil Science and Plant Analysis.2020; 51(14): 1888. CrossRef - Rare rather than abundant microbial communities drive the effects of long-term greenhouse cultivation on ecosystem functions in subtropical agricultural soils
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Science of The Total Environment.2020; 706: 136004. CrossRef - Electrophysical and geoinformational methods of mapping the biological properties of peats
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Dokuchaev Soil Bulletin.2020; (103): 149. CrossRef - Chitosan with Bentonite and Biochar in Ni-Affected Soil Reduces Grain Ni Concentrations, Improves Soil Enzymes and Grain Quality in Lentil
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Minerals.2020; 11(1): 11. CrossRef - Structural and functional responses of bacterial and fungal communities to multiple heavy metal exposure in arid loess
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Journal of Environmental Management.2020; 269: 110737. CrossRef - Differences of the microbial community structures and predicted metabolic potentials in the lake, river, and wetland sediments in Dongping Lake Basin
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- Comparative analysis of bacterial diversity in the rhizosphere of tomato by culture-dependent and -independent approaches
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Shin Ae Lee , Jiyoung Park , Bora Chu , Jeong Myeong Kim , Jae-Ho Joa , Mee Kyung Sang , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2016;54(12):823-831. Published online November 26, 2016
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DOI: https://doi.org/10.1007/s12275-016-6410-3
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942
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Abstract
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The microbiome in the rhizosphere–the region surrounding
plant roots–plays a key role in plant growth and health,
enhancing nutrient availability and protecting plants from
biotic and abiotic stresses. To assess bacterial diversity in the
tomato rhizosphere, we performed two contrasting approaches:
culture-dependent and -independent. In the culturedependent
approach, two culture media (Reasoner’s 2A agar
and soil extract agar) were supplemented with 12 antibiotics
for isolating diverse bacteria from the tomato rhizosphere
by inhibiting predominant bacteria. A total of 689 bacterial
isolates were clustered into 164 operational taxonomic units
(OTUs) at 97% sequence similarity, and these were found to
belong to five bacterial phyla (Proteobacteria, Actinobacteria,
Bacteroidetes, Acidobacteria, and Firmicutes). Of these, 122
OTUs were retrieved from the antibiotic-containing media,
and 80 OTUs were recovered by one specific antibiotic-containing
medium. In the culture-independent approach, we
conducted Illumina MiSeq amplicon sequencing of the 16S
rRNA gene and obtained 19,215 high-quality sequences, which
clustered into 478 OTUs belonging to 16 phyla. Among the
total OTUs from the MiSeq dataset, 22% were recovered in
the culture collection, whereas 41% of OTUs in the culture
collection were not captured by MiSeq sequencing. These
results
showed that antibiotics were effective in isolating
various taxa that were not readily isolated on antibiotic-free
media, and that both contrasting approaches provided complementary
information to characterize bacterial diversity
in the tomato rhizosphere.
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- Dynamics of bacterial communities in rice field soils as affected by different long-term fertilization practices
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Jae-Hyung Ahn , Shin Ae Lee , Jeong Myeong Kim , Myung-Sook Kim , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2016;54(11):724-731. Published online October 29, 2016
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DOI: https://doi.org/10.1007/s12275-016-6463-3
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1,003
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2
Download
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35
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Abstract
PDF
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Fertilization and the response of the soil microbial community
to the process significantly affect crop yield and the environment.
In this study, the seasonal variation in the bacterial
communities in rice field soil subjected to different
fertilization treatments for more than 50 years was investigated
using 16S rRNA sequencing. The simultaneous application
of inorganic fertilizers and rice straw compost (CAPK)
maintained the species richness of the bacterial communities
at levels higher than that in the case of non-fertilization (NF)
and application of inorganic fertilizers only (APK) in the initial
period of rice growth. The seasonal variation in the bacterial
community structure in the NF and APK plots showed
cyclic behavior, suggesting that the effect of season was important;
however, no such trend was observed in the CAPK
plot. In the CAPK plot, the relative abundances of putative
copiotrophs such as Bacteroidetes, Firmicutes, and Proteobacteria
were higher and those of putative oligotrophs such
as Acidobacteria and Plactomycetes were lower than those in
the other plots. The relative abundances of organotrophs with
respiratory metabolism, such as Actinobacteria, were lower
and those of chemoautotrophs that oxidize reduced iron and
sulfur compounds were higher in the CAPK plot, suggesting
greater carbon storage in this plot. Increased methane emission
and nitrogen deficiency, which were inferred from the
higher abundances of Methylocystis and Bradyrhizobium in
the CAPK plot, may be a negative effect of rice straw application;
thus, a solution for these should be considered to increase
the use of renewable resources in agricultural lands.
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- Siphonobacter intestinalis sp. nov., a bacterium isolated from the feces of Pseudorhynchus japonicus
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Shin Ae Lee , Jeong Myeong Kim , Jae-Hyung Ahn , Jae-Ho Joa , Soo-Jin Kim , Mee-Kyung Sang , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2016;54(11):709-712. Published online October 29, 2016
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DOI: https://doi.org/10.1007/s12275-016-6451-7
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Strain 63MJ-2T was isolated from the feces of broad-winged
katydid (Pseudorhynchus japonicus) collected in Korea. The
16S rRNA gene sequence of this strain showed the highest
sequence similarity with that of Siphonobacter aquaeclarae
P2T (96.1%) and had low similarities (below 86.3%) with those
of other members of family ‘Flexibacteraceae’. The strain
63MJ-2T is a strictly aerobic, Gram-stain-negative, non-motile,
rod-shaped bacterium. The strain grew at 4–35°C (optimum,
25–30°C), pH of 5.0–9.0 (optimum, 6.0–7.0), and
0–2.0% (optimum, 1.0–2.0) (w/v) NaCl. The DNA G+C content
of strain 63MJ-2T was 43.5 mol%. The major fatty acids
were C16:1 ω5c (42.5%), iso-C17:0 3-OH (18.7%), and summed
feature 3 (iso-C15:0 2-OH and/or C16:1 ω7c, 18.0%). The major
menaquinone was MK-7 and polar lipids were phosphatidylethanolamine,
six unknown aminolipids, and five unknown
lipids. Based on the evidence from our polyphasic
taxonomic study, we conclude that strain 63MJ-2T should be
classified as a novel species of the genus Siphonobacter, and
propose the name Siphonobacter intestinalis sp. nov. The
type strain is 63MJ-2T (=KACC 18663T =NBRC 111883T).
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Citations
Citations to this article as recorded by - Notification of changes in taxonomic opinion previously published outside the IJSEM: List of Changes in Taxonomic Opinion no. 43
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Validation List no. 227: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Siphonobacter curvatus sp. nov., isolated from a freshwater river
Yunho Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2018; 68(6): 1925. CrossRef
- Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil
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Jae-Hyung Ahn , Byoung-chan Kim , Soo-Jin Kim , Geun-Hey Lee , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2015;53(10):673-677. Published online October 2, 2015
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DOI: https://doi.org/10.1007/s12275-015-5132-2
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914
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Strain GP20-2T was isolated from a soil cultivated with ginseng
in Korea. The 16S rRNA gene sequence of this strain
showed the highest sequence similarity with Sphingomonas
daechungensis CH15-11T (96.7%) and Sphingomonas sediminicola
Dae 20T (96.2%) among the type strains. The strain
GP20-2T was a strictly aerobic, Gram-negative, non-motile,
rod-shaped bacterium that formed very tiny colonies, less than
0.3 mm in diameter after 10 days on R2A agar. The strain
grew at 10–35°C (optimum, 35°C), at a pH of 5.0–8.0 (optimum,
pH 6.0), and in the absence of NaCl. The DNA G+C
content of strain GP20-2T was 67.2 mol%. It contained ubiquinone
Q-10 as the major isoprenoid quinone, and summed
feature 8 (C18:1ω6c and/or C18:1ω7c, 49.8%) and C16:0 (17.0%)
as the major fatty acids. On the basis of evidence from our
polyphasic taxonomic study, we concluded that strain GP20-2T
should be classified as a novel species of the genus Sphingomonas,
for which the name Sphingomonas parvus sp. nov. is
proposed. The type strain is GP20-2T (=KACC 12865T =DSM
100456T).
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Citations
Citations to this article as recorded by - Validation list no. 228: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Sphingomonas segetis sp. nov., isolated from spinach farming field soil
Jae-Chan Lee, Kyung-Sook Whang
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(6): 3905. CrossRef - Sphingomonas ginkgonis sp. nov., isolated from phyllosphere of Ginkgo biloba
Inseong Cha, Heeyoung Kang, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology.2019; 69(10): 3224. CrossRef - An Effect of Salt Concentration and Inoculum Size on Poly(Vinyl Alcohol) Utilization by Two Sphingomonas Strains
Markéta Měrková, Markéta Julinová, Josef Houser, Jan Růžička
Journal of Polymers and the Environment.2018; 26(6): 2227. CrossRef - Sphingomonas limnosediminicola sp. nov. and Sphingomonas palustris sp. nov., isolated from freshwater environments
Ji Hee Lee, Dae In Kim, Han Na Choe, Soon Dong Lee, Chi Nam Seong
International Journal of Systematic and Evolutionary Microbiology.2017; 67(8): 2834. CrossRef - Sphingomonas lutea sp. nov., isolated from freshwater of an artificial reservoir
Ji Hee Lee, Dae In Kim, Joo Won Kang, Chi Nam Seong
International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5493. CrossRef
- Chujaibacter soli gen. nov., sp. nov., isolated from soil
-
Soo-Jin Kim , Jae-Hyung Ahn , Hang-Yeon Weon , Seung-Beom Hong , Soon-Ja Seok , Jeong-Seon Kim , Soon-Wo Kwon
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J. Microbiol. 2015;53(9):592-597. Published online August 27, 2015
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DOI: https://doi.org/10.1007/s12275-015-5136-y
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1,070
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25
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Abstract
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A Gram-staining-negative, aerobic, non-flagellated, rod-shaped
bacterial strain, KIS55-21T, was isolated from a soil sample
from Chuja Island, Jeju Province, Republic of Korea.
Strain KIS55-21T grew optimally at pH 7.0, at 28–30°C and
in the presence of 0% (w/v) NaCl. Neighbor-joining and
maximum-likelihood trees based on the 16S rRNA gene sequences
revealed that strain KIS55-21T fell within the family
Xanthomonadaceae and was closely related to Metallibacterium
scheffleri DKET. Strain KIS55-21T exhibited the highest
16S rRNA gene sequence similarity (92.6%) to that of M.
scheffleri DKET, with similarities of less than 92.0% to those
of the genera Dokdonella, Rhodanobacter, Aquimonas, and
Frateuria. Strain KIS55-21T contained ubiquinone-8 (Q-8)
as the predominant ubiquinone, iso-C17:0, summed feature 9
(iso-C17:1 ω9c and/or C16:0 10-methyl), anteiso-C17:0 and C16:0
as the major fatty acids, and phosphatidylethanolamine, aminophospholipid,
phosphatidylglycerol, diphosphatidylglycerol,
and phosphatidylmonomethylethanolamine as the main
polar lipids. The DNA G+C content of strain KIS55-21T was
65.9 mol%. Differential phenotypic and chemotaxonomic
properties and phylogenetic data of strain KIS55-21T demonstrated
that this strain is distinguishable from closely related
genera within the family Xanthomonadaceae. On the basis
of the data presented, strain KIS55-21T is considered to represent
a novel genus and species, for which the name Chujaibacter
soli gen. nov., sp. nov. is proposed. The type strain is
KIS55-21T (=KACC 16971T =DSM 28578T).
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Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_11): 3763. CrossRef
- Nocardioides paucivorans sp. nov. Isolated from Soil
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Jae-Hyung Ahn , Jun-Muk Lim , Soo-Jin Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2014;52(12):990-994. Published online November 29, 2014
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DOI: https://doi.org/10.1007/s12275-014-4587-x
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One strain, designated KIS31-44T, was isolated from a soil sample collected from Dokdo Island, South Korea. The strain is Gram-stain-positive, aerobic, non-spore-forming and nonmotile. It grows optimally at 28–30°C, at pH 7.0 and 0% NaCl. 16S rRNA gene sequence analysis showed that strain KIS31-44T belonged to the genus Nocardioides and shared the highest sequence similarities with Nocardioides aestuarii JC2056T (95.5%) and Nocardioides terrae VA15T (95.0%). The major fatty acids of strain KIS31-44T were C17:1 ω6c, C18:1 ω9c, summed feature 3 (C16:1 ω6c and/or C16:1 ω7c), iso-C16:0, C18:0 10-methyl (TBSA), C16:0 2-OH, C17:0 10-methyl, and iso-C16:1 H. The major isoprenoid quinone was MK-8 (H4). The strain
contained diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol as the major polar lipids. The peptidoglycan structure was A3γ-type with LL-diaminopimelic acid. Based on these data, the isolate represents one novel species
in the genus Nocardioides, for which the name Nocardioides paucivorans sp. nov. (type strain KIS31-44T =DSM 27142T =KACC 17309T) is proposed.
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Citations
Citations to this article as recorded by - Validation List no. 229: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Nocardioides alcanivorans sp. nov., a novel hexadecane-degrading species isolated from plastic waste
Julia Mitzscherling, Joana MacLean, Daniel Lipus, Alexander Bartholomäus, Kai Mangelsdorf, André Lipski, Vladimir Roddatis, Susanne Liebner, Dirk Wagner
International Journal of Systematic and Evolutionary Microbiology
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Nocardioides sambongensis sp. nov., isolated from Dokdo Islands soil
Ye-Ji Hwang, Jin-Soo Son, Soo-Yeong Lee, Yuxi He, YoungJae Jo, Jae-Ho Shin, Sa-Youl Ghim
International Journal of Systematic and Evolutionary Microbiology
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Israel Journal of Ecology and Evolution.2018; 64(1-4): 1. CrossRef -
Nocardioides cavernae sp. nov., an actinobacterium isolated from a karst cave
Ming-Xian Han, Bao-Zhu Fang, Ye Tian, Wan-Qin Zhang, Jian-Yu Jiao, Lan Liu, Zi-Tong Zhang, Min Xiao, Da-Qiao Wei, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
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Nocardioides thalensis sp. nov., isolated from a desert
Inam Ullah Khan, Firasat Hussain, Neeli Habib, Min Xiao, Iftikhar Ahmed, Arshia Amin, Xiao-Yang Zhi, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(8): 2848. CrossRef - Nocardioides baekrokdamisoli sp. nov., isolated from soil of a crater lake
Keun Chul Lee, Kwang Kyu Kim, Jong-Shik Kim, Dae-Shin Kim, Suk-Hyung Ko, Seung-Hoon Yang, Yong Kook Shin, Jung-Sook Lee
International Journal of Systematic and Evolutionary Microbiology.2016; 66(10): 4231. CrossRef - Nocardioides pakistanensis sp. nov., isolated from a hot water spring of Tatta Pani in Pakistan
Arshia Amin, Iftikhar Ahmed, Neeli Habib, Saira Abbas, Min Xiao, Wael N. Hozzein, Wen-Jun Li
Antonie van Leeuwenhoek.2016; 109(8): 1101. CrossRef -
Nocardioides ungokensis sp. nov., isolated from lake sediment
Yan Zhao, Qingmei Liu, Myung-Suk Kang, Fengxie Jin, Hongshan Yu, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_12): 4857. CrossRef
- Diaminobutyricibacter tongyongensis gen. nov., sp. nov. and Homoserinibacter gongjuensis gen. nov., sp. nov. Belong to the Family Microbacteriaceae
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Soo-Jin Kim , Jae-Hyung Ahn , Hang-Yeon Weon , Moriyuki Hamada , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2014;52(6):527-533. Published online February 17, 2014
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DOI: https://doi.org/10.1007/s12275-014-3278-y
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Two bacterial strains, KIS66-7T and 5GH26-15T, were isolated from soil samples collected in the South Korean cities of Tongyong and Gongju, respectively. Both strains were aerobic, Gram-stain-positive, mesophilic, flagellated, and rodshaped. A phylogenetic analysis revealed that both strains belonged to the family Microbacteriaceae of the phylum Actinobacteria. The 16S rRNA gene sequence of strain KIS66-7T had the highest similarities with those of Labedella gwakjiensis KSW2-17T (97.3%), Cryobacterium psychrophilum DSM 4854T (97.2%), Leifsonia lichenia 2SbT (97.2%), Leifsonia naganoensis JCM 10592T (97.0%), and Cryobacterium mesophilum MSL-15T (97.0%). Strain 5GH26-15T showed the highest sequence similarities with Leifsonia psychrotolerans LI1T (97.4%) and Schumannella luteola KHIAT (97.1%). The 16S rRNA gene sequence from KIS66-7T exhibited 96.4% similarity with that from 5GH26-15T. Strain KIS66-7T contained a B2γ type peptidoglycan structure with D-DAB as the diamino acid; MK-13, MK-12, and MK-14 as the respiratory quinones; ai-C15:0, ai-C17:0, and i-C16:0 as the major cellular fatty acids; and diphosphatidylglycerol, phatidylglycerol, and glycolipids as the predominant polar lipids. Strain 5GH26-15T had a B2β type peptidoglycan structure with D-DAB as the diamino acid; MK-14 and MK-13 as the respiratory quinones; ai-C15:0, i-C16:0, and ai-C17:0 as the major cellular fatty acids; and diphosphatidylglycerol, phatidylglycerol, and glycolipids as the predominant polar lipids. Both strains had low DNA-DNA hybridization values (<40%) with closely related taxa. Based on our polyphasic taxonomic characterization, we propose that strains KIS66-7T and 5GH26-15T represent novel genera and species, for which we propose the names Diaminobutyricibacter tongyongensis gen. nov., sp. nov. (type strain KIS66-7T =KACC 15515T =NBRC 108724T) and Homoserinibacter gongjuensis gen. nov., sp. nov. (type strain 5GH26-15T =KACC 15524T =NBRC 108755T) within the family Microbacteriaceae.
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Citations
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Ruicaihuangia ninglii sp. nov., Ruicaihuangia jiafui sp. nov. and Homoserinibacter chengtaonis sp. nov., three new members of the family Microbacteriaceae isolated from the Qinghai–Tibet Plateau, China
Wenbo Luo, Yuanmeihui Tao, Juan Zhou, Wenjing Lei, Qun Xiao, Ji Pu, Han Zheng, Jing Yang, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Taxonomic rearrangement of Salinibacterium, Leifsonia, Diaminobutyricibacter, Antiquaquibacter, Homoserinimonas and Glaciibacter: refining genus boundaries and proposal of two new genera – Orlajensenia gen. nov. and Leifsonella gen. nov.
Maher Gtari, Dhouha Boussoufa, Faten Ghodhbane-Gtari, Imed Sbissi
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - High Culturable Bacterial Diversity From a European Desert: The Tabernas Desert
Esther Molina-Menor, Helena Gimeno-Valero, Javier Pascual, Juli Peretó, Manuel Porcar
Frontiers in Microbiology.2021;[Epub] CrossRef -
Planctomonas psychrotolerans sp. nov., isolated from rhizosphere soil of Suaeda salsa
Xiao-Jun Li, Chun-Miao Wang, Xue-Mei Feng, Shao-Wei Liu, Hai-Xia Qiao, Yue-Li Chang, Cheng-Hang Sun
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(10): 5271. CrossRef - Planctomonas deserti gen. nov., sp. nov., a new member of the family Microbacteriaceae isolated from soil of the Taklamakan desert
Shao-Wei Liu, Fei-Na Li, Hong-Yun Zheng, Xin Qi, Da-Lin Huang, Yun-Ying Xie, Cheng-Hang Sun
International Journal of Systematic and Evolutionary Microbiology.2019; 69(3): 616. CrossRef -
Protaetiibacter intestinalis gen. nov., of the family Microbacteriaceae, isolated from gut of Protaetia brevitarsis seulensis, reclassification of Lysinimonas kribbensis Jang et al. 2013 as Pseudolysinimonas kribbensis gen. nov., comb. nov. a
Jun Heo, Hayoung Cho, Mi Ae Kim, Moriyuki Hamada, Tomohiko Tamura, Satomi Saitou, Soo-Jin Kim, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(7): 2101. CrossRef - Huakuichenia soli gen. nov., sp. nov., a new member of the family Microbacteriaceae, isolated from contaminated soil
Long Zhang, Xiao-Long Chen, Qiang Hu, Zhe-Pu Ruan, Kai Chen, Shun-Peng Li, Jian-Dong Jiang
International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5399. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_7): 2184. CrossRef
- Paenibacillus cucumis sp. nov. Isolated from Greenhouse Soil
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Jae-Hyung Ahn , Byoung-chan Kim , Byung-Yong Kim , Soo-Jin Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2014;52(6):460-464. Published online May 29, 2014
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DOI: https://doi.org/10.1007/s12275-014-4071-7
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1,064
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Strain CO 4-7T was isolated from greenhouse soil used for cultivation of cucumbers in Korea. The 16S rRNA gene sequence of strain CO 4-7T showed the highest sequence similarity with Paenibacillus contaminans CKOBP-6T (94.2%) among the type strains. Strain CO 4-7T was a strictly aerobic, Gram-staining-positive, endospore-forming, and motile rodshaped bacterium. Strain CO 4-7T grew at 10–45°C (optimum, 30°C), at pH 6.0–7.5 (optimum, pH 6.5) and in the presence of 0–5% NaCl (optimum, 0.5%). The DNA G+C content of strain CO 4-7T was 48.5 mol%. It contained MK-7 as the major isoprenoid quinone and anteiso-C15:0 (51.8%), C16:0 (12.7%), and iso-C16:0 (8.6%) as the major fatty acids. The cell wall contained meso-diaminopimelic acid. Based on evidence from our polyphasic taxonomic study, it was concluded that strain CO 4-7T should be classified as a novel species of the genus Paenibacillus, for which, the name Paenibacillus cucumis sp. nov. is proposed. The type strain is CO 4-7T (=KACC 17444T=JCM 19515T).
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Citations
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Divya Darshika Mala, Ashneel Ajay Singh, Ramesh Subramani, Sathiyaraj Srinivasan, Taitusi Taufa, Ashok Kumar, Francis Mani, Md Rajib Sharker
PLOS One.2026; 21(9): e0359203. CrossRef - Enhancement of stability and activity of RSD amylase from Paenibacillus lactis OPSA3 for biotechnological applications by covalent immobilization on green silver nanoparticles
Emmanuel Tobechukwu Ugwuoji, Ifeanyi S. Eze, Tochukwu Nwamaka T. Nwagu, Lewis Iheanacho Ezeogu
International Journal of Biological Macromolecules.2024; 279: 135132. CrossRef - Biological control of a novel strain Bacillus velezensis CMML21–47 against sweet potato wilt and black rot diseases
Yoeng-Seok Yoon, Ju Gyeong Lee, Narayan Chandra Paul, Soyoon Park, Sojung Ryu, Hyunsook Kim, Hyeong Woo Kim, Seonghun Im, Hyunkyu Sang, Gui Hwan Han
Biological Control.2024; 195: 105541. CrossRef - Detergent-stable amylase production by Paenibacillus lactis strain OPSA3 isolated from soil; optimization by response surface methodology
Emmanuel Tobechukwu Ugwuoji, Tochukwu Nwamaka T. Nwagu, Lewis Iheanacho Ezeogu
Biotechnology Reports.2023; 39: e00808. CrossRef - Comparative genomic and functional analyses of Paenibacillus peoriae ZBSF16 with biocontrol potential against grapevine diseases, provide insights into its genes related to plant growth-promoting and biocontrol mechanisms
Lifang Yuan, Hang Jiang, Xilong Jiang, Tinggang Li, Ping Lu, Xiangtian Yin, Yanfeng Wei
Frontiers in Microbiology.2022;[Epub] CrossRef - Siphonobacter intestinalis sp. nov., a bacterium isolated from the feces of Pseudorhynchus japonicus
Shin Ae Lee, Jeong Myeong Kim, Jae-Hyung Ahn, Jae-Ho Joa, Soo-Jin Kim, Mee-Kyung Sang, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
Journal of Microbiology.2016; 54(11): 709. CrossRef - Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil
Jae-Hyung Ahn, Byoung-chan Kim, Soo-Jin Kim, Geun-Hey Lee, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
Journal of Microbiology.2015; 53(10): 673. CrossRef - The Prevalence and Control of Bacillus and Related Spore-Forming Bacteria in the Dairy Industry
Nidhi Gopal, Colin Hill, Paul R. Ross, Tom P. Beresford, Mark A. Fenelon, Paul D. Cotter
Frontiers in Microbiology.2015;[Epub] CrossRef -
Mucilaginibacter ginsengisoli sp. nov., isolated from a ginseng-cultivated soil
Jae-Hyung Ahn, Byoung-chan Kim, Jae-Ho Joa, Soo-Jin Kim, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_11): 3933. CrossRef
- Niabella terrae sp. nov. Isolated from Greenhouse Soil
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Jae-Hyung Ahn , Eun-Hye Jo , Byung-Yong Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2013;51(6):731-735. Published online December 19, 2013
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DOI: https://doi.org/10.1007/s12275-013-3507-9
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1,195
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An orange-colored bacterial strain, ICM 1-15T, was isolated
from greenhouse soil. The 16S rRNA gene sequence of this
strain showed the highest sequence similarity with Niabella
ginsengisoli GR10-1T (95.2%) and Niabella yanshanensis
CCBAU 05354T (95.0%) among the type strains. The strain
ICM 1-15T was a strictly aerobic, Gram-negative, non-sporeforming,
non-motile, flexirubin pigment-producing, short
rod-shaped bacterium. The strain grew at 15–35°C (optimum,
25°C), at a pH of 5.0–8.5 (optimum, pH 6.5), and in
the presence of 0–3% NaCl (optimum, 1%). The DNA G+C
content of strain ICM 1-15T was 43.6 mol%. It contained
MK-7 as the major isoprenoid quinone and iso-C15:0 (38.9%),
iso-C15:1 G (20.3%), and iso-C17:0 3-OH (12.9%) as the major
fatty acids. On the basis of evidence from our polyphasic
taxonomic study, we concluded that strain ICM 1-15T should
be classified within a novel species of the genus Niabella,
for which the name Niabella terrae sp. nov. is proposed.
The type strain is ICM 1-15T (=KACC 17443T =JCM 19502T).
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Citations
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Ling Zhang, Chuansheng Geng, Xingjuan Chen, Letian Chen, Tongchu Deng, Meiying Xu
Current Microbiology.2024;[Epub] CrossRef -
Niabella defluvii sp. nov., isolated from influent water of a wastewater treatment plant
Jihyeon Min, Yongjun Son, Yerim Park, Woojun Park
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland
Sheng-Zhi Guo, Tong Wu, Hai-Zhen Zhu, Lei Yan, Zhi-Pei Liu, De-Feng Li, Cheng-Ying Jiang, Shuang-Jiang Liu, Xi-Hui Shen
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Niabella hibiscisoli sp. nov., isolated from soil of a Rose of Sharon garden
Hien T. T. Ngo, Huan Trinh, Zheng-Fei Yan, Gabriela Moya, MooChang Kook, Tae-Hoo Yi
International Journal of Systematic and Evolutionary Microbiology.2017; 67(4): 784. CrossRef - Niabella ginsenosidivorans sp. nov., isolated from compost
Kwon-Jung Yi, Wan-Taek Im, Dong-Woon Kim, Qing Mei Liu, Soo-Ki Kim
Journal of Microbiology.2015; 53(11): 762. CrossRef - Effects of fluoroquinolone antibiotics on reactor performance and microbial community structure of a membrane bioreactor
Fangang Meng, Guihe Gao, Tao-Tao Yang, Xi Chen, Yuanqing Chao, Guangshui Na, Linke Ge, Li-Nan Huang
Chemical Engineering Journal.2015; 280: 448. CrossRef
- Lysinibacillus chungkukjangi sp. nov., Isolated from Chungkukjang, Korean Fermented Soybean Food
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Kyung-Sook Whang , Soon-Wo Kwon
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J. Microbiol. 2013;51(3):400-404. Published online June 28, 2013
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DOI: https://doi.org/10.1007/s12275-013-2664-1
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886
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19
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Abstract
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One bacterial strain 2RL3-2T was isolated from Chungkukjang, a traditional Korean fermented food made from soybeans, and determined to be a Gram-positive, aerobic, sporeforming rod. Growth of the novel strain was optimal at 30°C and pH 7.0. The 16S rRNA gene of strain 2RL3-2T showed the highest level of sequence similarity to Lysinibacillus sinduriensis BLB-1T (99.0%), Lysinibacillus massiliensis 4400831T (97.1%), Lysinibacillus xylanilyticus XDB9T (97.0%), and Lysinibacillus odysseyi 34hs-1T (96.8%). Phylogenetic analysis showed that strain 2RL3-2T formed a robust cluster with L. sinduriensis BLB-1T, L. massiliensis 4400831T, and L. odyssey 34hs-1T. The major fatty acids were anteiso-C15:0 (47.3%), iso-C16:0 (16.3%), and anteiso-C17:0 (11.3%), and the only menaquinone was MK-7. Diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine were the major polar lipids, along with an unknown phospholipid and two unknown lipids. The peptidoglycan type was A4α, with an interpeptide bridge of l-Lys–d-Asp. DNA-DNA hybridization values between strain 2RL3-2T and closely related Lysinibacillus species were below 43±4%. Therefore, based on phenotypic, chemotaxonomic, and phylogenetic characteristics, it was determined that strain 2RL3-2T represents a novel species of the genus Lysinibacillus, for which the name Lysinibacillus chungkukjangi sp. nov. is proposed. The type strain is 2RL3-2T (=KACC 16626T =NBRC 108948T).
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Archives of Microbiology.2024;[Epub] CrossRef - Lysinibacillus Species: Their Potential as Effective Bioremediation, Biostimulant, and Biocontrol Agents
Nusrat Ahsan, Masafumi Shimizu
Reviews in Agricultural Science.2021; 9: 103. CrossRef - Fermentation of Palm Oil Mill Effluent in the Presence of Lysinibacillus sp. LC 556247 to Produce Alternative Biomass Fuel
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Sustainability.2021; 13(21): 11915. CrossRef - Robust Demarcation of the Family Caryophanaceae (Planococcaceae) and Its Different Genera Including Three Novel Genera Based on Phylogenomics and Highly Specific Molecular Signatures
Radhey S. Gupta, Sudip Patel
Frontiers in Microbiology.2020;[Epub] CrossRef -
Lysinibacillus antri sp. nov., isolated from cave soil
Manik Prabhu Narsing Rao, Zhou-Yan Dong, Xue-Ke Niu, Kun Zhang, Ying-Qian Kang, Awalagaway Dhulappa, Min Xiao, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(5): 3295. CrossRef - Lysinibacillus cavernae sp. nov., isolated from cave soil
Yu Kan, Xue-Ke Niu, Manik Prabhu Narsing Rao, Zhou-Yan Dong, Yuan-Guo Xie, Ying-Qian Kang, Wen-Jun Li
Archives of Microbiology.2020; 202(6): 1529. CrossRef - Isolation and characterization of a novel piezotolerant bacterium Lysinibacillus yapensis sp. nov., from deep-sea sediment of the Yap Trench, Pacific Ocean
Libo Yu, Xixiang Tang, Shiping Wei, Yinkun Qiu, Xiashutong Xu, Guangxin Xu, Qilin Wang, Qian Yang
Journal of Microbiology.2019; 57(7): 562. CrossRef -
Lysinibacillus alkalisoli sp. nov., isolated from saline–alkaline soil
Ji-Quan Sun, Lian Xu, Xiao-Lei Wu
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(1): 67. CrossRef - Description of Lysinibacillus telephonicus sp. nov., isolated from the screen of a cellular phone
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International Journal of Systematic and Evolutionary Microbiology.2017; 67(7): 2289. CrossRef - Lysinibacillus endophyticus sp. nov., an indole-3-acetic acid producing endophytic bacterium isolated from corn root (Zea mays cv. Xinken-5)
Jiang Yu, Xuejiao Guan, Chongxi Liu, Wensheng Xiang, Zhenhua Yu, Xiaobing Liu, Guanghua Wang
Antonie van Leeuwenhoek.2016; 109(10): 1337. CrossRef -
Lysinibacillus acetophenoni sp. nov., a solvent-tolerant bacterium isolated from acetophenone
M. Azmatunnisa, K. Rahul, K. V. N. S. Lakshmi, Ch. Sasikala, Ch. V. Ramana
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_6): 1741. CrossRef -
Lysinibacillus alkaliphilus sp. nov., an extremely alkaliphilic bacterium, and emended description of genus Lysinibacillus
Fei Zhao, Youzhi Feng, Ruirui Chen, Jianwei Zhang, Xiangui Lin
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_8): 2426. CrossRef - Lysinibacillus varians sp. nov., an endospore-forming bacterium with a filament-to-rod cell cycle
Chunjie Zhu, Guoping Sun, Xingjuan Chen, Jun Guo, Meiying Xu
International Journal of Systematic and Evolutionary Microbiology.2014; 64(Pt_11): 3644. CrossRef -
Lysinibacillus halotolerans sp. nov., isolated from saline-alkaline soil
Delong Kong, Yanwei Wang, Bingqiang Zhao, Yanting Li, Jinlong Song, Yi Zhai, Chi Zhang, Huimin Wang, Xiaorong Chen, Bin Zhao, Zhiyong Ruan
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_8): 2593. CrossRef - Nocardioides paucivorans sp. nov. isolated from soil
Jae-Hyung Ahn, Jun-Muk Lim, Soo-Jin Kim, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
Journal of Microbiology.2014; 52(12): 990. CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_11): 3931. CrossRef
- Paraherbaspirillum soli gen. nov., sp. nov. Isolated from Soil
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Rangasamy Anandham , Soo-Jin Kim , Ji Young Moon , Hang-Yeon Weon , Soon-Wo Kwon
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J. Microbiol. 2013;51(2):262-267. Published online April 27, 2013
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DOI: https://doi.org/10.1007/s12275-013-2563-5
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724
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A bacterial strain, designated JS5-2T, was isolated from soil collected from Jeju Island, Republic of Korea. The cells of the strain were Gram-negative, nonspore forming, catalaseand oxidase-positive, aerobic, nonmotile and rod-shaped. Strain JS5-2T exhibited 96.2–97.2, 95.1–96.3, and 95.4–95.8% 16S rRNA gene sequence similarities to the genera Herbaspirillum, Oxalicibacterium, and Herminiimonas, respectively. The highest sequence similarities were with Herbaspirillum autotrophicum IAM 14942T (97.2%) and Herbaspirillum frisingense GSF30T (97.1%). The major fatty acids of strain JS5-2T were C16:0 (35.0%), C17:0 cyclo (19.9%), C18:1 ω7c (11.4%), and summed feature 3 (C16:1 ω7c/C15:0 iso 2-OH) (15.2%),
and the major polar lipids of strain JS5-2T were diphosphatidylglycerol and an unknown aminophospholipid. The strain contained Q-8 as the predominant ubiquinone. DNA-DNA relatedness values between strain JS5-2T and H. autotrophicum IAM 14942T, and H. frisingense GSF30T were 32 and 35%, respectively. The DNA G+C content of strain JS5-2T was 59.0 mol%. On the basis of phenotypic, genotypic, and physiological evidence, strain JS5-2T represents a novel species of a new genus, for which the name Paraherbaspirillum soli gen. nov., sp. nov. is proposed. The type strain JS5-2T (=KACC 12633T =NBRC 106496T) is proposed.
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Citations
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Xuewen Wu, Chun-Zhi Jin, Feng-Jie Jin, Taihua Li, Yun Ju Sung, Hee-Mock Oh, Hyung-Gwan Lee, Long Jin
Antonie van Leeuwenhoek.2020; 113(2): 253. CrossRef - Noviherbaspirillum agri sp. nov., isolated from reclaimed grassland soil, and reclassification of Herbaspirillum massiliense (Lagier et al., 2014) as Noviherbaspirillum massiliense comb. nov.
Dhiraj Kumar Chaudhary, Jaisoo Kim
International Journal of Systematic and Evolutionary Microbiology.2017; 67(5): 1508. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_7): 2365. CrossRef
- Rhodanobacter umsongensis sp. nov., Isolated from a Korean Ginseng Field
-
Yi-Seul Kim , Soo-Jin Kim , Rangasamy Anandham , Hang-Yeon Weon , Soon-Wo Kwon
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J. Microbiol. 2013;51(2):258-261. Published online April 27, 2013
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DOI: https://doi.org/10.1007/s12275-013-2516-z
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790
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12
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A bacterial isolate designated GR24-2T was isolated from Korean soil used for cultivating ginseng (Panax ginseng C. A. Meyer). The strain was aerobic, Gram-negative, motile, and rod-shaped. It grew optimally at 28–30°C, pH 7.0, and in a range of 0–1% NaCl. Phylogenetically, the strain clustered with members of the genus Rhodanobacter. The strain exhibited the highest sequence similarities (>98%) with R. panaciterrae LnR5-47T (98.4%), R. soli DCY45T (98.2%), and
R. ginsengisoli GR17-7T (98.0%). However, it also showed high sequence similarities (>97%) with some other Rhodanobacter and Dyella species. The strain contained Q-8 as the predominant respiratory quinone. The major fatty acids
(greater than 10% of the total fatty acids) were iso-C17:1 ω9c (24.5%), iso-C16:0 (22.8%), anteiso-C15:0 (10.5%), and iso-C15:0 (10.1%). Its major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and
an unknown aminophospholipid. The DNA G+C content of strain GR24-2T was 65.6 mol%. The strain showed less than 70% DNA relatedness values between the closely related Rhodanobacter and Dyella species. The phylogeny, phenotype,
DNA–DNA hybridization, and chemotaxonomic data generated in this study reveal that the isolate is a novel species of the genus Rhodanobacter. The name proposed for this strain is Rhodanobacter umsongensis sp. nov. (type strain GR24-2T =KACC 12917T =DSM 21300T).
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Citations
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- Pedobacter namyangjuensis sp. nov. Isolated from Soil and Reclassification of Nubsella zeaxanthinifaciens Asker et al. 2008 as Pedobacter zeaxanthinifaciens comb. nov.
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Dong-Uk Kim , Yoo-Jeong Kim , Dong-Hyeon Shin , Hang-Yeon Weon , Soon-Wo Kwon , Chi-Nam Seong , Jong-Ok Ka
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J. Microbiol. 2013;51(1):25-30. Published online March 2, 2013
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DOI: https://doi.org/10.1007/s12275-013-2231-9
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Abstract
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A Gram-stain-negative, non-motile, strictly aerobic, yellowpigmented bacterium, designated strain 5G38T, was isolated from a field cultivated with Chinese cabbage in Korea. The strain grew at 5–40°C and at pH 6.0–8.0. 16S rRNA gene sequence analysis revealed that strain 5G38T represented a distinct lineage within the family Sphingobacteriaceae and showed the highest 16S rRNA gene sequence similarity of 95.2% with Pedobacter koreensis WPCB189T, followed by Pedobacter agri PB92T (94.6%), Pedobacter suwonensis 15-52T (94.4%), Pedobacter rhizosphaerae 01-96T (94.4%), Pedobacter sandarakinus DS-27T (94.4%), and Nubsella zeaxanthinifaciens TDMA-5T (94.3%). Strain 5G38T formed monophyletic clade with Nubsella zeaxanthinifaciens in the cluster comprised of species of the genus Pedobacter. Chemotaxonomic characteristics of the novel strains, including DNA G+C content of genomic DNA (37.0 mol%), the predominant respiratory quinine (MK-7), and the major fatty acids which were iso-C15:0, summed feature 3 (comprising C16:1ω7c and/or iso-C15:0 2-OH) and iso-C17:0 3-OH, are similar to those of the genus Pedobacter. However, the novel strains can be distinguished from the other species of Pedobacter by physiological properties. The name Pedobacter namyangjuensis sp. nov. is therefore proposed for strain 5G38T (KACC 13938T =NBRC 107692T) as the type strain. Furthermore, the reclassification of Nubsella zeaxanthinifaciens as Pedobacter zeaxanthinifaciens comb. nov. is proposed.
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Citations
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J. Microbiol. 2012;50(6):1086-1086.
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In the article by Soon-Jin Kim et al. that appears in the Journal of Microbiology 2012; 50, 673-679, the menaquinone composition
of strain 5317J-19T was presented as MK-12 (50%) and MK-11 (31%) as major ones, and MK-13 (11%), MK-10 (7%), and
MK-9 (1%). The correct composition of menaquinones are MK-13 (50%) and MK-12 (31%) as major ones, and MK-14 (11%),
MK-11 (7%), and MK-10 (1%).
- Effects of PCR Cycle Number and DNA Polymerase Type on the 16S rRNA Gene Pyrosequencing Analysis of Bacterial Communities
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Jae-Hyung Ahn , Byung-Yong Kim , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2012;50(6):1071-1074. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2642-z
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643
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The effects of PCR cycle number and DNA polymerase type on 16S rRNA gene pyrosequencing analysis were investigated using an artificially prepared bacterial community (mock community). The bacterial richness was overestimated at increased PCR cycle number mostly due to the occurence of chimeric sequences, and this was more serious with a DNA polymerase having proofreading activity than with Taq DNA polymerase. These results suggest that PCR cycle number must be kept as low as possible for accurate estimation of bacterial richness and that particular care must be taken when a DNA polymerase having proofreading activity is used.
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International Journal of Molecular Sciences.2013; 14(6): 12853. CrossRef
- Diaminobutyricimonas aerilata gen. nov., sp. nov., a Novel Member of the Family Microbacteriaceae Isolated from an Air Sample in Korea
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Yun-Hee Jang , Soo-Jin Kim , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(6):1047-1052. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2118-1
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A novel isolate, designated 6408J-67T, was isolated from an air sample collected from Jeju Island, Republic of Korea. Its phenotypic, genotypic, and chemotaxonomic properties were compared with those of members of the family Microbacteriaceae.
The Gram-positive, aerobic, motile rod formed light yellow, smooth, circular and convex colonies. Optimal growth occurred at 30°C and pH 7.0. 16S rRNA gene sequence data showed that the isolate was a novel member of the family Microbacteriaceae, with the highest sequence similarity (97.4%) to Labedella gwakjiensis KSW2-17T and less (<97%) sequence similarity with other taxa. The major cellular fatty acids (>10% of the total) were anteiso-C15:0, iso-C14:0, and iso-C16:0. The strain also contained MK-13, MK-12, and MK-14 as the major menaquinones, as well as diphosphatidylglycerol, phosphatidylglycerol, and two unknown glycolipids. Its peptidoglycan structure was B1β with 2,4-diaminobutyric acid as a diamino acid. Mycolic acids were absent. The DNA G+C content was 68.3 mol%. Based on these phenotypic and genotypic findings, strain 6408J-67T represents a novel species of a new genus within the family Microbacteriaceae, for which the name Diaminobutyricimonas aerilata gen. nov., sp. nov. is proposed. The type strain is 6408J-67T (=KACC 15518T =NBRC 108726T).
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Anthony J. Young, Catherine J. Nock
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Kyung Sook Bae, Mi Sun Kim, Ji Hee Lee, Joo Won Kang, Dae In Kim, Ji Hee Lee, Chi Nam Seong
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- Caenimonas terrae sp. nov., Isolated from a Soil Sample in Korea, and Emended Description of the Genus Caenimonas Ryu et al. 2008
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Soo-Jin Kim , Hang-Yeon Weon , Yi-Seul Kim , Ji Young Moon , Soon Ja Seok , Seung-Beom Hong , Soon-Wo Kwon
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J. Microbiol. 2012;50(5):864-868. Published online November 4, 2012
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DOI: https://doi.org/10.1007/s12275-012-1587-6
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689
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A white-coloured bacterium, SGM1-15T, was isolated from a paddy soil sample from Suwon, Republic of Korea. The cells were strictly aerobic, Gram-negative and curved rodshaped. A phylogenetic analysis based on 16S rRNA gene sequences revealed that strain SGM1-15T was closely related to Curvibacter delicatus LMG 4328T (97.6% similarity) and Caenimonas koreensis EMB320T (97.5% similarity). The major respiratory quinone system was Q-8 and the predominant cellular fatty acids were C16:0 (39.9%), summed feature 3 (C16:1 ω7c and/or iso-C15:0 2-OH; 24.3%) and C17:0 cyclo (22.7%). The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The major polyamines were 2-hydroxypurescine, purescine and spermidine. The DNA G+C content was 68.7 mol%. On the basis of the phylogenetic, physiologicl and chemotaxonomic data, stain SGM1-15T represents a novel species of the genus Caenimonas, for which the name Caenimonas terrae sp. nov. is proposed. The type strain of Caenimonas terrae is SGM1-15T (=KACC 13365T =NBRC 106341T).
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Ve Van Le, So-Ra Ko, Sang-Ah Lee, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
Journal of Microbiology and Biotechnology.2022; 32(5): 575. CrossRef - The Structure of Stable Cellulolytic Consortia Isolated from Natural Lignocellulosic Substrates
Grigory V. Gladkov, Anastasiia K. Kimeklis, Alexey M. Afonin, Tatiana O. Lisina, Olga V. Orlova, Tatiana S. Aksenova, Arina A. Kichko, Alexander G. Pinaev, Evgeny E. Andronov
International Journal of Molecular Sciences.2022; 23(18): 10779. CrossRef - Caenimonas soli sp. nov., isolated from soil
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- Burkholderia denitrificans sp. nov., Isolated from the Soil of Dokdo Island, Korea
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Chang-Muk Lee Lee , Hang-Yeon Weon , Sang-Hong Yoon , Soo-Jin Kim , Bon-Sung Koo , Soon-Wo Kwon
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J. Microbiol. 2012;50(5):855-859. Published online November 4, 2012
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DOI: https://doi.org/10.1007/s12275-012-1554-2
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748
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9
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A novel, Gram-negative, bacterial strain KIS30-44T was identified from wet forest soil collected on the Korean island of Dokdo. Growth of the strain was observed at 15–30°C, pH 5−9, 0–3% NaCl, and 950 mM KNO3. KIS30-44T reduced nitrate to nitrogen gas. Analysis of the 16S rRNA gene sequence showed that KIS30-44T was phylogenetically related to Burkholderia sacchari, Burkholderia mimosarum, and Burkholderia oxyphila (98.1%, 98.0%, and 98.0% sequence similarity, respectively). The genomic G+C content was 63.5 mol%. KIS30-44T exhibited less than 52% DNA-DNA relatedness with the type strains of 9 closely related Burkholderia species. The major isoprenoid quinone was Q-8. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and two unknown aminolipids. The major fatty acids in KIS30-44T were C16:0, C18:1 ω7c and summed feature 3 (iso-C15:0 2-OH and C16:1 ω7c), and the strain contained half the amount of C17:0 cyclo found in the 9 closely related Burkholderia species. The results of these phenotypic, 16S rRNA gene sequence, DNA-DNA hybridization, and chemotaxonomic data indicate that KIS30-44T represents a novel species within the genus Burkholderia, for which the name Burkholderia denitrificans (Type strain KIS30-44T =KACC 12733T =DSM 24336T) is proposed.
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- Characterization of the Bacterial and Archaeal Communities in Rice Field Soils Subjected to Long-Term Fertilization Practices
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Jae-Hyung Ahn , Jaekyeong Song , Byung-Yong Kim , Myung-Sook Kim , Jae-Ho Joa , Hang-Yeon Weon
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J. Microbiol. 2012;50(5):754-765. Published online November 4, 2012
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DOI: https://doi.org/10.1007/s12275-012-2409-6
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781
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123
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The bacterial and archaeal communities in rice field soils subjected to different fertilization regimes for 57 years were investigated in two different seasons, a non-planted, drained season (April) and a rice-growing, flooded season (August), by performing soil dehydrogenase assay, real-time PCR assay and pyrosequencing analysis. All fertilization regimes increased the soil dehydrogenase activity while the abundances of bacteria and archaea increased in the plots receiving inorganic fertilizers plus compost and not in those receiving inorganic fertilizers only. Rice-growing and flooding decreased the soil dehydrogenase activity while they increased the bacterial diversity in rice field soils. The bacterial communities were dominated by Chloroflexi, Proteobacteria, and Actinobacteria and the archaeal communities by Crenarchaeota at the phylum level. In principal coordinates analysis based on the weighted Fast UniFrac metric, the bacterial and archaeal communities were separated primarily by season, and generally distributed along with soil pH, the variation of which had been caused by long-term fertilization. Variations in the relative abundance according to the season or soil pH were observed for many bacterial and archaeal groups. In conclusion, the microbial activity, prokaryotic abundance and diversity, and prokaryotic community structure in the rice field soils were changed by season and long-term fertilization.
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- Pyrosequencing Analysis of the Bacterial Communities in the Guts of Honey Bees Apis cerana and Apis mellifera in Korea
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Jae-Hyung Ahn , In-Pyo Hong , Jeung-Im Bok , Byung-Yong Kim , Jaekyeong Song , Hang-Yeon Weon
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J. Microbiol. 2012;50(5):735-745. Published online November 4, 2012
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DOI: https://doi.org/10.1007/s12275-012-2188-0
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The bacterial communities in the guts of the adults and larvae of the Asian honey bee Apis cerana and the European honey bee Apis mellifera were surveyed by pyrosequencing the 16S rRNA genes. Most of the gut bacterial 16S rRNA gene sequences were highly similar to the known honey bee-specific ones and affiliated with Pasteurellaceae or lactic acid bacteria (LAB). The numbers of operational taxonomic units (OTUs, defined at 97% similarity) were lower in the larval guts (6 or 9) than in the adult guts (18 or 20), and the frequencies of Pasteurellaceae-related OTUs were higher in the larval guts while those of LAB-related OTUs in the adult guts. The frequencies of Lactococcus, Bartonella, Spiroplasma, Enterobacteriaceae, and Flavobacteriaceae-related OTUs were much higher in A. cerana guts while Bifidobacterium and Lachnospiraceae-related OTUs were more abundant in A. mellfera guts. The bacterial community structures in the midguts and hindguts of the adult honey bees were not different for A. cerana, but significantly different for A. mellifera. The above results substantiated the previous observation that honey bee guts are dominated by several specific bacterial groups, and also showed that the relative abundances of OTUs could be markedly changed depending on the developmental stage, the location within the gut, and the honey bee species. The possibility of using the gut bacterial community as an indicator of honey bee health was discussed.
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Citations
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- Homoserinimonas aerilata gen. nov., sp. nov., a Novel Member of the Family Microbacteriaceae Isolated from an Air Sample in Korea
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(4):673-679. Published online July 21, 2012
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DOI: https://doi.org/10.1007/s12275-012-2096-3
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A bacterial strain isolated from an air sample, strain 5317J-19T, was characterized. The isolate was an aerobic, motile, Gram-positive rod. The organism was able to grow between 4 and 35°C and between pH 6 and 9. The predominant fatty acids were anteiso-C15:0 and iso-C16:0. The major respiratory menaquinones were MK-12 and MK-11, and the minor ones were MK13, MK-10, and MK-9. Genomic DNA G+C content was 66 mol%. The diagnostic diamino acid of the peptidoglycan is presumably D-Orn. The peptidoglycan is supposed to be B2β type. The 16S rRNA gene sequence analysis indicated that this isolate belongs to the family Microbacteriaceae and had the highest sequence similarities with Salinibacterium xinjiangense 0543T (97.6%), Salinibacterium amurskyense KMM 3673T (97.2%), and Leifsonia bigeumensis MSL-27T (97.2%). Phylogenetic analysis and phenotypic characteristics support the proposal of a new genus and a novel species, with the name Homoserinimonas aerilata gen. nov., sp. nov. The type strain of Homoserinimonas aerilata is 5317J-19T (=KACC 15522T =NBRC 108729T).
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Tae-Su Kim, Ji-Hye Han, Yochan Joung, Seung Bum Kim
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_8): 2753. CrossRef - Diaminobutyricibacter tongyongensis gen. nov., sp. nov. and Homoserinibacter gongjuensis gen. nov., sp. nov. Belong to the Family Microbacteriaceae
Soo-Jin Kim, Jae-Hyung Ahn, Hang-Yeon Weon, Moriyuki Hamada, Ken-ichiro Suzuki, Soon-Wo Kwon
Journal of Microbiology.2014; 52(6): 527. CrossRef -
Rudaibacter terrae gen. nov., sp. nov., isolated from greenhouse soil
Soo-Jin Kim, Ji-Young Moon, Moriyuki Hamada, Tomohiko Tamura, Hang-Yeon Weon, Ken-ichiro Suzuki, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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- Flavobacterium cheonhonense sp. nov., Isolated from a Freshwater Reservoir
-
Siwon Lee , Jung-Hwan Oh , Hang-Yeon Weon , Tae-Young Ahn
-
J. Microbiol. 2012;50(4):562-566. Published online July 21, 2012
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DOI: https://doi.org/10.1007/s12275-012-1229-z
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1,074
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0
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14
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Abstract
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A novel bacterium, designated strain ARSA-15T, was isolated from a freshwater sample collected from the Cheonho reservoir, Cheonan, Republic of Korea. The isolate was deepyellow pigment, Gram-negative, rod-shaped, non-motile, and catalase- and oxidase-positive. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate belongs to the genus Flavobacterium, and shared less than 97% sequence similarity with recognized Flavobacterium species. The novel species was able to grow at 10–37°C, pH 6.5–10.0, and in 0–0.5% (w/v) NaCl concentrations. Chemotaxonomically, iso-C15:1, iso-C15:0, and iso-C16:0 were observed to be the predominant cellular fatty acid, and menaquinone-6 (MK-6) was the predominant respiratory quinone. The major polar lipid patterns of strain ARSA-19T was phosphatidylethanolamine, unknown aminolipid (AL1 and AL2), and unidentified polar lipids (L1, L2, and L3). The genomic DNA G+C content of the isolate was 39.2 mol%. On the basis of polyphasic approach, strain ARSA-15T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium cheonhonense sp. nov. is proposed. The type strain is ARSA-15T (=KACC 14967T =KCTC 23180T =JCM 17064T).
-
Citations
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Environmental Monitoring and Assessment.2026;[Epub] CrossRef -
Flavobacterium mekongense sp. nov., isolated from the Mekong River in Thailand
Chitwadee Phithakrotchanakoon, Supattra Kitikhun, Paopit Siriarchawatana, Piyanat Charoenyingcharoen, Sukanya Jeennor, Thanyakorn Nilsakha, Amonwan Chanpet, Thanat Vorajinda, Sermsiri Mayteeworakoon, Pattaraporn Yukphan, Supawadee Ingsriswang
International Journal of Systematic and Evolutionary Microbiology
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Dou Han, Lei-Lei Yang, Yu-Hua Xin, Qing Liu
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Flavobacterium anseongense sp. nov. and Flavobacterium wongokense sp. nov., isolated from freshwater and freshwater soil in South Korea
Jung-Hun Jo, Soon-Youl Lee, Se-Yoon Chun, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology
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Daeho Kang, Hyebin Lee, Hyokwan Bae, Junho Jeon
Science of The Total Environment.2023; 879: 163172. CrossRef -
Flavobacterium sedimenticola sp. nov., isolated from sediment
Ningning Wu, Le Liu, Xueting Jiang, Ye Yuan, Dongmei Mao, Jiahui Shao, Jian He, Qirong Shen
International Journal of Systematic and Evolutionary Microbiology
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Journal of Microbiology.2022; 60(9): 890. CrossRef -
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Dhiraj Kumar Chaudhary, Ram Hari Dahal, Jaisoo Kim
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Siwon Lee, Wonseok Lee, Hyen-Mi Chung, Sangjung Park
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- Leucobacter denitrificans sp. nov., Isolated from Cow Dung
-
Hang-Yeon Weon , Rangasamy Anandham , Tomohiko Tamura , Moriyuki Hamada , Soo-Jin Kim , Yi-Seul Kim , Ken-ichiro Suzuki , Soon-Wo Kwon
-
J. Microbiol. 2012;50(1):161-165. Published online February 27, 2012
-
DOI: https://doi.org/10.1007/s12275-012-1324-1
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726
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31
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Abstract
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The bacterial strain M1T8B10T was isolated from cow dung
in Suwon, Republic of Korea. The strain was a Gram stainpositive
rod, nonmotile, and non-spore-forming. According
to 16S rRNA gene sequence analysis, the strain fell within
the clade of the genus Leucobacter, showing the highest sequence
similarities with Leucobacter aridicollis L-9T (98.7%),
Leucobacter iarius 40T (98.4%), and Leucobacter komagatae
JCM 9414T (98.2%). Cell-wall peptidoglycan contained the
diagnostic diamino acid 2,4-diaminobutyric acid of the genus
Leucobacter, showing B-type cross-linked peptidoglycans.
The major fatty acids were anteiso-C15:0, iso-C16:0, and anteiso-
C17:0. The quinone system consisted of the menaquinones
MK-11 (78%) and MK-10 (22%). The polar lipid profiles
contained diphosphatidylglycerol, phosphatidylglycerol, and
an unidentified glycolipid. Differences in several physiological
features including nitrate reduction enabled the isolate
to be differentiated from all recognized Leucobacter
species. Based on these phylogenetic, chemotaxonomic, and
phenotypic results, the isolate represents a novel species,
for which the name Leucobacter denitrificans sp. nov. is
proposed. The type strain is M1T8B10T (=KACC 14055T
=NBRC 106309T).
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- Cohnella soli sp. nov. and Cohnella suwonensis sp. nov. Isolated from Soil Samples in Korea
-
Soo-Jin Kim , Hang-Yeon Weon , Yi-Seul Kim , Soon-Wo Kwon
-
J. Microbiol. 2011;49(6):1033-1038. Published online December 28, 2011
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DOI: https://doi.org/10.1007/s12275-011-1071-8
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812
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0
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16
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Abstract
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Two bacterial isolates from soil samples taken in Korea, strains YM2-7T and WD2-19T, were characterized using a polyphasic approach. The cells were strictly aerobic, Gram-positive, motile with peritrichous flagella, and rod-shaped. Both strains formed ellipsoidal bulging positioned subterminal spores. Phylogenetic analysis of their 16S rRNA gene sequences revealed a clear affiliation with the Firmicutes. The 16S rRNA gene sequence similarity between YM2-7T and WD2-19T was 96.5%. Strains YM2-7T and WD2-19T showed 16S rRNA gene sequence similarities of 93.0-96.5% to type strains of recognized Cohnella species. The G+C contents of the DNA of strains YM2-7T and WD2-19T were 52.2 and 55.6 mol%, respectively. The major fatty acids of strains YM2-7T and WD2-19T were anteiso-C15:0 (44.4%), C16:0 (19.2%), and iso-C16:0 (16.8%) and anteiso-C15:0 (46.5%), iso-C16:0 (21.8%), and C16:0 (11.2%), respectively. Both strains contained menaquinone with seven isoprene units (MK-7) as the predominant quinone. Both strains had diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and lysophosphatidylglycerol as the major polar lipids. Comparative analysis of phenotypic and phylogenetic traits indicated that strains YM2-7T and WD2-19T represented two novel species of the genus Cohnella. The names Cohnella soli sp. nov. (type strain YM2-7T =KACC 13346T =NBRC 106486T), and Cohnella suwonensis sp. nov. (type strain WD2-19T =KACC 13347T =NBRC 106485T) are proposed for these organisms.
-
Citations
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Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Cohnella pontilimi sp. nov., isolated from tidal-flat mud
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Cohnella collisoli sp. nov., isolated from lava forest soil
Keun Chul Lee, Kwang Kyu Kim, Jong-Shik Kim, Dae-Shin Kim, Suk-Hyung Ko, Seung-Hoon Yang, Jung-Sook Lee
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_9): 3125. CrossRef -
Cohnella
nanjingensis sp. nov., an extracellular polysaccharide-producing bacterium isolated from soil
Zhi Huang, Ya-jun Yu, Yuan-yuan Bao, Li Xia, Xia-fang Sheng, Lin-yan He
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_9): 3320. CrossRef -
Cohnella lupini sp. nov., an endophytic bacterium isolated from root nodules of Lupinus albus
José David Flores-Félix, Lorena Carro, Martha-Helena Ramírez-Bahena, Carmen Tejedor, José M. Igual, Alvaro Peix, Encarna Velázquez
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_1): 83. CrossRef -
Cohnella
formosensis sp. nov., a xylanolytic bacterium isolated from the rhizosphere of Medicago sativa L
Asif Hameed, Mei-Hua Hung, Shih-Yao Lin, Yi-Han Hsu, You-Cheng Liu, Mariyam Shahina, Wei-An Lai, Hsin-Chieh Huang, Li-Sen Young, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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Li-Ying Wang, San-Feng Chen, Lei Wang, Yu-Guang Zhou, Hong-Can Liu
Antonie van Leeuwenhoek.2012; 102(1): 83. CrossRef
- Microbacterium suwonense sp. nov., Isolated from Cow Dung
-
Rangasamy Anandham , Tomohiko Tamura , Moriyuki Hamada , Hang-Yeon Weon , Soo-Jin Kim , Yi-Seul Kim , Ken-ichiro Suzuki , Soon-Wo Kwon
-
J. Microbiol. 2011;49(5):852-856. Published online November 9, 2011
-
DOI: https://doi.org/10.1007/s12275-011-1036-y
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877
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2
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14
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Abstract
PDF
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An actinomycete strain, designated M1T8B9T, was isolated from cow dung in Suwon, Republic of Korea. The isolate was a Gram-positive, nonmotile, and non-spore-forming bacterium. Phylogenetic evaluation based on 16S rRNA gene sequence similarity showed that this isolate belongs to the genus Microbacterium, with its closest neighbors being Microbacterium soli DCY17T (98.2%) and Microbacterium esteraromaticum DSM 8609T (98.0%). The polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, and one unknown glycolipid. Strain M1T8B9T contained the major fatty acids C15:0 anteiso, C16:0 iso, C17:0 anteiso, and C15:0 iso, and the cell-wall peptidoglycan was of type B2β. According to DNA-DNA hybridization studies, strain M1T8B9T showed 42% and 26% relatedness with M. soli DCY17T and M. esteraromaticum DSM 8609T, respectively. On the basis of the data presented, strain M1T8B9T is considered to represent a novel species of the genus Microbacterium, for which the name Microbacterium suwonense sp. nov. is proposed. The type strain is M1T8B9T (=KACC 14058T =NBRC 106310T).
-
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Microorganisms.2024; 12(2): 303. CrossRef - Harnessing the Power of Traditional Organic Formulations for Crop Growth and Microbial Harmony
Errakutty Arunan Yuvasri, Rangasamy Anandham, Dananjeyan Balachandar, Murugaiyan Senthilkumar, Subramaniam Thiyageshwari, Saminathan Vincent
Frontiers in Bioscience-Elite.2024;[Epub] CrossRef -
Microbacterium tenebrionis sp. nov. and Microbacterium allomyrinae sp. nov., isolated from larvae of Tenebrio molitor L. and Allomyrina dichotoma, respectively
Soon Dong Lee, In Seop Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Four new Microbacterium species isolated from seaweeds and reclassification of five Microbacterium species with a proposal of Paramicrobacterium gen. nov. under a genome-based framework of the genus Microbacterium
Soon Dong Lee, Hong Lim Yang, In Seop Kim
Frontiers in Microbiology.2023;[Epub] CrossRef -
Microbacterium protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis
Jun Heo, Hayoung Cho, Mi Ae Kim, Moriyuki Hamada, Tomohiko Tamura, Satomi Saitou, Soo-Jin Kim Kim, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2226. CrossRef -
Microbacterium wangchenii sp. nov., isolated from faeces of Tibetan gazelles (Procapra picticaudata) on the Qinghai-Tibet Plateau
Kui Dong, Jing Yang, Shan Lu, Ji Pu, Xin-He Lai, Dong Jin, Junqin Li, Gui Zhang, Xiaoxia Wang, Sihui Zhang, Wenjing Lei, Zhihong Ren, Xiaomin Wu, Ying Huang, Suping Wang, Jianguo Xu
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(2): 1307. CrossRef -
Azospirillum ramasamyi sp. nov., a novel diazotrophic bacterium isolated from fermented bovine products
Rangasamy Anandham, Jun Heo, Ramasamy Krishnamoorthy, Murugaiyan SenthilKumar, Nellaiappan Olgaganathan Gopal, Soo-Jin Kim, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
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Rangasamy Anandham, Nagaiah Premalatha, Hyeong Jin Jee, Hang Yeon Weon, Soon Wo Kwon, Ramasamy Krishnamoorthy, Pandiyan Indira Gandhi, Yong Ki Kim, Nellaiappan Olaganathan Gopal
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Dorota Nowicka, Dobrochna Ginter-Kramarczyk, Aleksandra Holderna-Odachowska, Irena Budnik, Ewa Kaczorek, Zenon Lukaszewski
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International Journal of Systematic and Evolutionary Microbiology
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- Rapid Discrimination of Potato Scab-Causing Streptomyces Species Based on the RNase P RNA Gene Sequences
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Hang-Yeon Weon , Jaekyeong Song , Byung-Yong Kim , On-Suk Hur , In-Cheol Park , Joo-Won Suh
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J. Microbiol. 2011;49(5):791-796. Published online November 9, 2011
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DOI: https://doi.org/10.1007/s12275-011-1279-7
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743
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Scab disease significantly damages potatoes and other root crops. Some Streptomyces species have been reported as potato-scab pathogens. Identification of the phytopathogenic Streptomyces is mainly done on the basis of the 16S rRNA gene, but use of this gene has some limitations for discriminating these strains because they share high similarities of 16S rRNA gene sequences. We tested the RNase P RNA (rnpB) gene as a taxonomic marker to clarify the relationship among closely related scab-causing Streptomyces strains. The rnpB genes were analyzed for 41 strains including 9 isolates from Jeju, Korea. There were 4 highly variable regions including nucleotide gaps in the rnpB genes. Interspecies similarity of the rnpB gene in tested Streptomyces strains was lower than about 97%, while the intraspecies similarity was higher than about 98%. Phylogenetic analysis demonstrated that the rnpB tree has similar topology to the 16S rRNA gene tree, but produces a more divergent phyletic lineage. These results revealed that the rnpB gene could be used as a powerful taxonomic tool for rapid differentiation of closely related Streptomyces species. In addition, it was also suggested that the variable regions marked as α, β, γ, and δ in the rnpB gene could be useful markers for the detection of specific Streptomyces species.
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Citations
Citations to this article as recorded by - Halotolerant Streptomyces albidoflavus INA 01478 as a Producer of Daidzein: Genome Annotation, purification and Antifungal Activity
O. N. Sineva, N. N. Markelova, K. V. Malysheva, O. A. Kolpakova, G. Kh. Kudryakova, I. A. Prokhorenko, O. V. Kisil, A. Yu. Simonov, V. I. Polshakov, I. B. Levshin, V. S. Sadykova
Applied Biochemistry and Microbiology.2025; 61(5): 872. CrossRef
- Microbial Community Analysis and Identification of Alternative Host-Specific Fecal Indicators in Fecal and River Water Samples Using Pyrosequencing
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Ju-Yong Jeong , Hee-Deung Park , Kyong-Hee Lee , Hang-Yeon Weon , Jong-Ok Ka
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J. Microbiol. 2011;49(4):585-594. Published online September 2, 2011
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DOI: https://doi.org/10.1007/s12275-011-0530-6
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719
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It is important to know the comprehensive microbial communities of fecal pollution sources and receiving
water bodies for microbial source tracking. Pyrosequencing targeting the V1-V3 hypervariable regions of
the 16S rRNA gene was used to investigate the characteristics of bacterial and Bacteroidales communities
in major fecal sources and river waters. Diversity analysis indicated that cow feces had the highest diversities
in the bacterial and Bacteroidales group followed by the pig sample, with human feces having the lowest
value. The Bacteroidales, one of the potential fecal indicators, totally dominated in the fecal samples accounting
for 31%-52% of bacterial sequences, but much less (0.6%) in the river water. Clustering and Venn diagram
analyses showed that the human sample had a greater similarity to the pig sample in the bacterial and
Bacteroidales communities than to samples from other hosts. Traditional fecal indicators, i.e., Escherichia
coli, were detected in the human and river water samples at very low rates and Clostridium perfringens and
enterococci were not detected in any samples. Besides the Bacteroidales group, some microorganisms detected
in the specific hosts, i.e., Parasutterella excrementihominis, Veillonella sp., Dialister invisus, Megamonas funiformis,
and Ruminococcus lactaris for the human and Lactobacillus amylovorus and Atopostipes sp. for the
pig, could be used as potential host-specific fecal indicators. These microorganisms could be used as multiple
fecal indicators that are not dependent on the absence or presence of a single indicator. Monitoring for
multiple indicators that are highly abundant and host-specific would greatly enhance the effectiveness of
fecal pollution source tracking.
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- Paralcaligenes ureilyticus gen. nov., sp. nov. Isolated from Soil of a Korean Ginseng Field
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Soo-Jin Kim , Seung-Hee Yoo , Hang-Yeon Weon , Yi-Seul Kim , Rangasamy Anandham , Jang-Sun Suh , Soon-Wo Kwon
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J. Microbiol. 2011;49(3):502-507. Published online June 30, 2011
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DOI: https://doi.org/10.1007/s12275-011-0076-7
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A bacterial strain, designated GR24-5T, was isolated from soil cultivated with Korean ginseng. Cells were Gram-negative, strictly aerobic, catalase- and oxidase-positive, non-spore-forming motile rods. Based on the 16S rRNA gene sequence, strain GR24-5T could be assigned to the family Alcaligenaceae. Strain GR24-5T showed the highest sequence similarities with Parapusillimonas granuli Ch07T (97.1%), Pusillimonas noertemannii BN9T (96.9%), Pigmentiphaga kullae DSM 13608T (96.5%), and Castellaniella defragrans 54PinT (96.3%). Strain GR24-5T demonstrated a low DNA-DNA relatedness (23%) with P. granuli Ch07T. The major respiratory quinone is ubiquinone 8 (Q-8) and the major fatty acids are C16:0, C17:0 cyclo, and summed feature 1 (C14:03-OH/iso-C16:1 I/C12:0 alde). Putrescine, spermidine, and 2-hydroxyputrescine are the major polyamines. The major polar lipids are phosphatidylmethylethanolamine, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unknown aminophospholipid. Polar lipid patterns of strain GR24-5T were unique in having a large amount of phosphatidylmethylethanolamine. Based on phylogenetic analysis and physiological and biochemical characteristics, strain GR245T represents a novel genus and species, for which the name Paralcaligenes ureilyticus gen. nov., sp. nov. is proposed. The type strain of P. aralcaligenes ureilyticus is GR24-5T (=KACC 13888T =DSM 24591T).
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Citations
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Neopusillimonas aromaticivorans sp. nov. isolated from poultry manure
Shih-Yao Lin, Tzu-Yu Lin, Asif Hameed, Yu-Shan Tang, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Paracandidimonas caeni sp. nov., isolated from sludge
Li Yao, Yuhan Lai, Fei Xue, Lina Sun, Jialian Wang
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(11): 3332. CrossRef - Achromobacter panacis sp. nov., isolated from rhizosphere of Panax ginseng
Priyanka Singh, Yeon Ju Kim, Hina Singh, Mohamed El-Agamy Farh, Deok-Chun Yang
Journal of Microbiology.2017; 55(6): 428. CrossRef - Paralcaligenes ginsengisoli sp. nov., isolated from ginseng cultivated soil
Jong-Pyo Kang, Ngoc-Lan Nguyen, Yeon-Ju Kim, Van-An Hoang, Kwi-Sik Bae, Deok-Chun Yang
Antonie van Leeuwenhoek.2015; 108(3): 619. CrossRef -
Paenalcaligenes suwonensis sp. nov., isolated from spent mushroom compost
Ji-Young Moon, Jun-Muk Lim, Jae-Hyung Ahn, Hang-Yeon Weon, Soon-Wo Kwon, Soo-Jin Kim
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_3): 882. CrossRef -
Eoetvoesia caeni gen. nov., sp. nov., isolated from an activated sludge system treating coke plant effluent
Tamás Felföldi, Anita Vengring, Zsuzsa Kéki, Károly Márialigeti, Peter Schumann, Erika M. Tóth
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_6): 1920. CrossRef - List of new names and new combinations previously effectively, but not validly, published – Validation List No. 141
International Journal of Systematic and Evolutionary Microbiology
.2011; 61(9): 2025. CrossRef
- Flavobacterium koreense sp. nov., Flavobacterium chungnamense sp. nov., and Flavobacterium cheonanense sp. nov., Isolated from a Freshwater Reservoir
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Siwon Lee , Hang-Yeon Weon , Soo-Jin Kim , Tae-Young Ahn
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J. Microbiol. 2011;49(3):387-392. Published online June 30, 2011
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DOI: https://doi.org/10.1007/s12275-011-0382-0
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1,069
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Taxonomic studies were performed on three strains isolated from Cheonho reservoir in Cheonan, Korea. The isolates were Gram-negative, aerobic, rod-shaped, non-motile, catalase-positive, and oxidase-positive. Colonies on solid media were cream-yellow, smooth, shiny, and circular. Phylogenetic analysis of the 16S rRNA gene sequences revealed that these strains belong to the genus Flavobacterium. The strains shared 98.6-99.4% sequence similarity with each other and showed less than 97% similarity with members of the genus Flavobacterium with validly published names. The DNA-DNA hybridization results confirmed the separate genomic status of strains ARSA-42T, ARSA-103T, and ARSA-108T. The isolates contained menaquinone-6 as the predominant menaquinone and iso-C15:0, iso-C15:0 3-OH, iso-C15:1 G, and iso-C16:0 3-OH as the major fatty acids. The genomic DNA G+C content of the isolates were 31.4-33.2 mol%. According to the phenotypic and genotypic data, these organisms are classified as representative of three novel species in the genus Flavobacterium, and the name Flavobacterium koreense sp. nov. (strain ARSA-42T =KCTC 23182T =JCM 17066T =KACC 14969T), Flavobacterium chungnamense sp. nov. (strain ARSA-103T =KCTC 23183T =JCM 17068T =KACC 14971T), and Flavobacterium cheonanense sp. nov. (strain ARSA-108T =KCTC 23184T =JCM 17069T =KACC 14972T) are proposed.
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Citations
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Flavobacterium anseongense sp. nov. and Flavobacterium wongokense sp. nov., isolated from freshwater and freshwater soil in South Korea
Jung-Hun Jo, Soon-Youl Lee, Se-Yoon Chun, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology
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Ye Zhuo, Chun-Zhi Jin, Chang-Soo Lee, Kee-Sun Shin, Hyung-Gwan Lee
BMC Microbiology.2025;[Epub] CrossRef - Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
Journal of Microbiology.2022; 60(9): 890. CrossRef - Microbial community origin and fate through a rural wastewater treatment plant
Kymberly Newton, Emmanuel Gonzalez, Frederic E. Pitre, Nicholas J. B. Brereton
Environmental Microbiology.2022; 24(5): 2516. CrossRef - Bacterial and Archaeal Assemblages from Two Size Fractions in Submarine Groundwater Near an Industrial Zone
Xiaogang Chen, Qi Ye, Jinzhou Du, Jing Zhang
Water.2019; 11(6): 1261. CrossRef - Flavobacterium ardleyense sp. nov., isolated from Antarctic soil
Ming-Yang Zhou, Xi-Ying Zhang, Xiao-Deng Yang, Yan-Jiao Zhang, Hai-Lun He, Daling Ning
International Journal of Systematic and Evolutionary Microbiology.2017; 67(10): 3996. CrossRef -
Flavobacterium soyangense sp. nov., a psychrotolerant bacterium, isolated from an oligotrophic freshwater lake
Gi Gyun Nam, Yochan Joung, Miri Park, Suhyun Kim, Hyoung Tae Jeon, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(7): 2440. CrossRef -
Flavobacterium lutivivi sp. nov., isolated from activated sludge
Qingqing Feng, Lu Han, Yuichi Nogi, Qing Hong, Jie Lv
International Journal of Systematic and Evolutionary Microbiology
.2016; 66(3): 1394. CrossRef - Flavobacterium buctense sp. nov., isolated from freshwater
Xiao-Min Feng, Xu Tan, Li Jia, Ping-Ping Long, Lu Han, Jie Lv
Archives of Microbiology.2015; 197(9): 1109. CrossRef -
Flavobacterium maotaiense sp. nov., isolated from freshwater
Qingqing Feng, Yuan Gao, Yuichi Nogi, Xu Tan, Lu Han, Yali Zhang, Jie Lv
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_1): 171. CrossRef - Phylogeny of Flavobacteria Group Isolated from Freshwater Using Multilocus Sequencing Analysis
Seyoung Mun, Jungnam Lee, Siwon Lee, Kyudong Han, Tae-Young Ahn
Genomics & Informatics.2013; 11(4): 272. CrossRef - Flavobacterium aquaticum sp. nov., a member of the Bacteroidetes isolated from a freshwater reservoir
Siwon Lee, Jungnam Lee, Tae-Young Ahn
Journal of Microbiology.2013; 51(3): 283. CrossRef -
Flavobacterium aciduliphilum sp. nov., isolated from freshwater, and emended description of the genus
Flavobacterium
Ji Young Kang, Jeesun Chun, Kwang Yeop Jahng
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_5): 1633. CrossRef -
Flavobacterium dankookense sp. nov., isolated from a freshwater reservoir, and emended descriptions of
Flavobacterium cheonanense
,
F. chungname
Siwon Lee, Hang-Yeon Weon, Kyudong Han, Tae-Young Ahn
International Journal of Systematic and Evolutionary Microbiology
.2012; 62(Pt_10): 2378. CrossRef - Flavobacterium cheonhonense sp. nov., isolated from a freshwater reservoir
Siwon Lee, Jung-Hwan Oh, Hang-Yeon Weon, Tae-Young Ahn
Journal of Microbiology.2012; 50(4): 562. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology
.2012; 62(1): 1. CrossRef
- Analyses of Bacterial Communities in Meju, a Korean Traditional Fermented Soybean Bricks, by Cultivation-Based and Pyrosequencing Methods
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Yi-Seul Kim , Min-Cheol Kim , Soon-Wo Kwon , Soo-Jin Kim , In-Cheol Park , Jong-Ok Ka , Hang-Yeon Weon
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J. Microbiol. 2011;49(3):340-348. Published online June 30, 2011
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DOI: https://doi.org/10.1007/s12275-011-0302-3
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Despite the importance of meju as a raw material used to make Korean soy sauce (ganjang) and soybean paste (doenjang), little is known about the bacterial diversity of Korean meju. In this study, the bacterial communities in meju were examined using both culture-dependent and independent methods in order to
evaluate the diversity of the bacterial population. Analyses of the 16S rRNA gene sequences of the bacterial strains isolated from meju samples showed that the dominant species were related to members of the genera Bacillus, Enterococcus, and Pediococcus. The community DNAs extracted from nine different meju samples
were analyzed by barcoded pyrosequencing method targeting of the V1 to V3 hypervariable regions of the 16S rRNA gene. In total, 132,374 sequences, with an average read length of 468 bp, were assigned to several phyla, with Firmicutes (93.6%) representing the predominant phylum, followed by Proteobacteria
(4.5%) and Bacteroidetes (0.8%). Other phyla accounted for less than 1% of the total bacterial sequences. Most of the Firmicutes were Bacillus and lactic acid bacteria, mainly represented by members of the genera Enterococcus, Lactococcus, and Leuconostoc, whose ratio varied among different samples. In conclusion,
this study indicated that the bacterial communities in meju were very diverse and a complex microbial consortium containing various microorganisms got involved in meju fermentation than we expected before.
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Jong-Gyu Kim, Jeong-Yeong Park
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Andri Frediansyah
Process Biochemistry.2024; 147: 600. CrossRef - Fermentative metabolic features of doenjang-meju as revealed by genome-centered metatranscriptomics
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- Acinetobacter brisouii sp. nov., Isolated from a Wetland in Korea
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Rangasamy Anandham , Hang-Yeon Weon , Soo-Jin Kim , Yi-Seul Kim , Byung-Yong Kim , Soon-Wo Kwon
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J. Microbiol. 2010;48(1):36-39. Published online March 11, 2010
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DOI: https://doi.org/10.1007/s12275-009-0132-8
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A bacterial strain 5YN5-8T was isolated from peat layer on Yongneup in Korea. Cells of strain 5YN5-8T were strictly aerobic, Gram-negative, coccobacilli, non-spore forming, and non-motile. The isolate exhibited optimal growth at 28°C, pH 7.0, and 0-1% NaCl. Results of 16S rRNA gene sequence analyses indicated a close relationship of this isolate to Acinetobacter calcoaceticus (97.8% similarity for strain DSM 30006T). It also exhibited 94.4-97.8% 16S rRNA gene sequence similarities to the validly published Acinetobacter species. The value for DNA-DNA hybridization between strain 5YN5-8T and other members of the genus Acinetobacter ranged from 16 to 28%. Predominant cellular fatty acids were C18:1 ω9c, summed feature 4 containing C15:0 iso 2-OH and/or C16:1 ω7c, and C16:0. The DNA G+C content was 43.9 mol%. Phylogenetic, phenotypic, and chemotaxonomic data accumulated in this study revealed that the isolate could be classified in a novel species of the genus Acinetobacter. The name Acinetobacter brisouii sp. nov. is proposed for the novel species, with 5YN5-8T (=KACC 11602T =DSM 18516T) as the type strain.
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Citations
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