Journal of Microbiology

Haneul Kim

4 Articles

Pedobacter soyangensis sp. nov., Isolated from Lake Soyang in Korea: Yochan Joung , Heeyoung Kang , Haneul Kim , Beom-Il Lee , O-Seob Kwon , Kiseong Joh; J. Microbiol. 2014;52(1):83-87. Published online January 4, 2014; DOI: https://doi.org/10.1007/s12275-014-3284-0

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Strain HME6451T was isolated from Lake Soyang in Korea. Phylogenetic tree based on 16S rRNA gene sequence showed that strain HME6451T formed a lineage within the genus Pedobacter. The strain HME6451T was closely related to Pedobacter daechungensis (95.4% sequence similarity), Pedobacter lentus (94.4%), and Pedobacter glucosidilyticus (93.8%). And strain HME6451T was a Gram-staining-negative, short rodshaped, strictly aerobic bacterium. The major fatty acids were iso-C15:0 (41.2%), summed feature 3 (comprising C16:1 ω7c and/or C16:1 ω6c; 23.1%), and iso-C17:0-3OH (10.1%). The polar lipids of HME6451T were consisted of one phosphatidylethanolamine, one unidentified aminolipid, one unidentified phospholipid and four unidentified polar lipids. The DNA G+C content was 36.0 mol%. On the basis of the evidence presented in this study, strain HME6451T represent a novel species of the genus Pedobacter, for which the name Pedobacter soyangensis sp. nov., is proposed the type strain HME6451T (=KCTC 23467T =CECT 7865T).

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Validation List no. 223. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef
Proposal of Pedobacter nototheniae sp. nov., isolated from the spleen of a black rock cod (Notothenia coriiceps, Richardson 1844) from the Chilean Antarctica
Peter Kämpfer, Rute Irgang, Guillermo Fernández-Negrete, Hans-Jürgen Busse, Matías Poblete-Morales, Derie Fuentes-Messina, Stefanie P. Glaeser, Ruben Avendaño-Herrera
Antonie van Leeuwenhoek.2019; 112(10): 1465. CrossRef
Pedobacter vanadiisoli sp. nov., isolated from soil of a vanadium mine
Zhiyong Wang, Yuanqing Tan, Ding Xu, Gejiao Wang, Jihong Yuan, Shixue Zheng
International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5112. CrossRef
Pedobacter rivuli sp. nov., isolated from a freshwater stream
Heeyoung Kang, Haneul Kim, Yochan Joung, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_12): 4073. CrossRef

Pontibacter jeungdoensis sp. nov., Isolated from a Solar Saltern in Korea: Yochan Joung , Haneul Kim , Beom-Il Lee , Heeyoung Kang , Tae Yong Jang , O-Seob Kwon , Kiseong Joh; J. Microbiol. 2013;51(4):531-535. Published online August 30, 2013; DOI: https://doi.org/10.1007/s12275-013-2324-5

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A Gram-staining-negative, rod-shaped and red-pigmented bacterial strain, HMD3125T, was isolated from a solar saltern in Jeungdo, Republic of Korea. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMD3125T formed a lineage within the genus Pontibacter and was similar to Pontibacter salisaro (96.1%) and P. korlensis (95.3%). The major fatty acids of strain HMD3125T were summed feature 4 (comprising iso-C17:1 I and/or anteiso-C17:1 B; 30.4%), iso-C15:0 (20.4%) and iso-C17:0 3OH (17.2%). The polar lipid profile of HMD3125T consisted of the phosphatidylethanolamine, four unidentified polar lipids, unidentified phospholipid, unidentified aminolipid and unidentified aminophospholipid. Strain HMD3125T contained MK-7 as the predominant menaquinone and sym-homospermidine as the major polyamine. The DNA G+C content of strain HMD3125T was 45.6 mol%. Strain HMD3125T assigned as a novel species in the genus Pontibacter, for which the name Pontibacter jeungdoensis sp. nov. is proposed. The type strain is HMD3125T (=KCTC 23156T =CECT 7710T).

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Microbial community and functional prediction during the processing of salt production in a 1000-year-old marine solar saltern of South China
Ya-Li Wei, Zi-Jie Long, Ming-Xun Ren
Science of The Total Environment.2022; 819: 152014. CrossRef
Pontibacter aquaedesilientis sp. nov., isolated from Jeongbang Waterfall, Jeju Island
Geeta Chhetri, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology .2021;[Epub] CrossRef
High-throughput absolute quantification sequencing reveals the effect of different fertilizer applications on bacterial community in a tomato cultivated coastal saline soil
Si-Qi Jiang, Ya-Nan Yu, Ren-Wei Gao, Huan Wang, Jian Zhang, Rong Li, Xiao-Hua Long, Qi-Rong Shen, Wei Chen, Feng Cai
Science of The Total Environment.2019; 687: 601. CrossRef
Pontibacter chitinilyticus sp. nov., a novel chitin-hydrolysing bacterium isolated from soil
Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Myung Kyum Kim, Taegun Seo
Antonie van Leeuwenhoek.2019; 112(7): 1011. CrossRef
Pontibacter locisalis Sy30T sp. nov. isolated from soil collected from an abandoned saltern
Yan-Xia Zhou, Zhi-Hong Xie, Jin-Xin Zhao, Zong-Jun Du, Guan-Jun Chen
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Pontibacter amylolyticus sp. nov., isolated from a deep-sea sediment hydrothermal vent field
Yue-Hong Wu, Peng Zhou, Shu-Ling Jian, Zhen-Sheng Liu, Chun-Sheng Wang, Aharon Oren, Xue-Wei Xu
International Journal of Systematic and Evolutionary Microbiology.2016; 66(4): 1760. CrossRef
Pontibacter aydingkolensis sp. nov., isolated from soil of a salt lake
Ghenijan Osman, Tao Zhang, Kai Lou, Yan Gao, Wei Chang, Qing Lin, Hong-Mei Yang, Xiang-Dong Huo, Ning Wang
International Journal of Systematic and Evolutionary Microbiology .2016; 66(12): 5523. CrossRef
Pontibacter mucosus sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment
Namita Nayyar, Puneet Kohli, Nitish Kumar Mahato, Rup Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(6): 2234. CrossRef
Pontibacter ummariensis sp. nov., isolated from a hexachlorocyclohexane-contaminated soil
N. K. Mahato, C. Tripathi, N. Nayyar, A. K. Singh, R. Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(2): 1080. CrossRef
Pontibacter chinhatensis sp. nov., isolated from pond sediment containing discarded hexachlorocyclohexane isomer waste
Amit Kumar Singh, Nidhi Garg, Rup Lal
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_7): 2248. CrossRef
Pontibacter humi sp. nov., Isolated from Mountain Soil
Sathiyaraj Srinivasan, Jae-Jin Lee, Sang-Seob Lee, Myung Kyum Kim
Current Microbiology.2014; 69(3): 263. CrossRef
Pontibacter diazotrophicus sp. nov., a Novel Nitrogen-Fixing Bacterium of the Family Cytophagaceae
Linghua Xu, Xian-Chun Zeng, Yao Nie, Xuesong Luo, Enmin Zhou, Lingli Zhou, Yunfan Pan, Wenjun Li, Paul Jaak Janssen
PLoS ONE.2014; 9(3): e92294. CrossRef

Gramella jeungdoensis sp. nov., Isolated from a Solar Saltern in Korea: Yochan Joung , Haneul Kim , Taeyong Jang , Tae-Seok Ahn , Kiseong Joh; J. Microbiol. 2011;49(6):1022-1026. Published online December 28, 2011; DOI: https://doi.org/10.1007/s12275-011-1192-0

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A non-motile, Gram- stain-negative, yellow pigmented, rod-shaped bacterium, strain HMD3159T, was isolated from a solar saltern in Korea. The major fatty acids were iso-C15:0 (26.3%), iso-C17:0 3OH (12.1%), iso-C16:0 (12.0%), summed feature 3 (comprising C16:1 ω7c and/or C16:1 ω6c; 11.0%) and summed feature 9 (iso-C17:1 ω9c and/or 10-methyl C16:0; 10.0%). The major respiratory quinone was MK-6. The DNA G+C content was 40.9 mol%. The phylogenetic tree based on 16S rRNA gene sequences showed that strain HMD3159T formed a lineage within the genus Gramella and closely related to Gramella gaetbulicola (95.5% sequence similarity), Gramella portivictoriae (94.9%), Gramella echinicola (94.6%), and Gramella marina (93.6%). On the basis of the evidence presented in this study, strain HMD3159T represents a novel species of the genus Gramella, for which the name Gramella jeungdoensis sp. nov., is proposed. The type strain is HMD3159T (=KCTC 32123T =CECT 7683T).

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Yangjie Lin, Kai Zhang, Minghuang Ling, Xiupian Liu, Longjiang Mao, Qiliang Lai, Zhuhua Luo
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef
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Lin Yang, Haolei Shi, Qian Li, Minggang Zheng, Qiliang Lai, Li Zheng
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Linking bacterial community composition to soil salinity along environmental gradients
Kristin M Rath, Noah Fierer, Daniel V Murphy, Johannes Rousk
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Gramella fulva sp. nov., isolated from a dry surface of tidal flat
Sae Hyun Hwang, Woon Mo Hwang, Keunsoo Kang, Tae-Young Ahn
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Mariyam Shahina, Asif Hameed, Shih-Yao Lin, Ren-Jye Lee, Maw-Rong Lee, Chiu-Chung Young
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Pontibacter salisaro sp. nov., Isolated from a Clay Tablet Solar Saltern in Korea: Yochan Joung , Haneul Kim , Tae-Seok Ahn , Kiseong Joh; J. Microbiol. 2011;49(2):290-293. Published online May 3, 2011; DOI: https://doi.org/10.1007/s12275-011-0093-6

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Abstract PDF

A Gram-negative, aerobic, rod-shaped, and red-pigmented bacterial strain, HMC5104T, was isolated from a solar saltern, found in Jeungdo, Republic of Korea (34°59′47′′N 126°10′02′′E). The major fatty acids were summed feature 4 (comprising iso-C17:1 I and/or anteiso-C17:1 B; 37.2%), iso-C15:0 (20.4%), and iso-C17:0 3OH (15.3%). The DNA G+C content was 46.0 mol%. The major isoprenoid quinone was menaquinone-7 (MK-7). A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMC5104T formed a lineage within the genus Pontibacter, and was closely related to Pontibacter korlensis (95.9%), P. roseus (94.9%), and P. actiniarum (94.3%). Similarities to all other Pontibacter species were between 95.9-93.9%. On the basis of the evidence presented in this study, strain HMC5104T represents a novel species of the genus Pontibacter, for which the name Pontibacter salisaro sp. nov. is proposed. The type strain is HMC5104T (=KCTC 22712T =NBRC 105731T).

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Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
Yali Wei, Fang Wang, Jiangli Gao, Yaolong Huang, Wei Ren, Hongmei Sheng
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Pontibacter chitinilyticus sp. nov., a novel chitin-hydrolysing bacterium isolated from soil
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Pontibacter beigongshangensis sp. nov., Isolated from the Mash of Wine
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Niu Li, Tianyun Shao, Tingshuo Zhu, Xiaohua Long, Xiumei Gao, Zhaopu Liu, Hongbo Shao, Zed Rengel
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Edaphorhabdus rosea gen. nov., sp. nov., a new member of the family Cytophagaceae isolated from soil in South Korea
Geeta Chhetri, Dahye Yang, Jiwon Choi, Hyungdong Kim, Taegun Seo
Antonie van Leeuwenhoek.2018; 111(12): 2385. CrossRef
Pontibacter locisalis Sy30T sp. nov. isolated from soil collected from an abandoned saltern
Yan-Xia Zhou, Zhi-Hong Xie, Jin-Xin Zhao, Zong-Jun Du, Guan-Jun Chen
Antonie van Leeuwenhoek.2016; 109(3): 415. CrossRef
Pontibacter amylolyticus sp. nov., isolated from a deep-sea sediment hydrothermal vent field
Yue-Hong Wu, Peng Zhou, Shu-Ling Jian, Zhen-Sheng Liu, Chun-Sheng Wang, Aharon Oren, Xue-Wei Xu
International Journal of Systematic and Evolutionary Microbiology.2016; 66(4): 1760. CrossRef
Pontibacter virosus sp. nov., isolated from a hexachlorocyclohexane-contaminated dumpsite
Puneet Kohli, Namita Nayyar, Anukriti Sharma, Amit Kumar Singh, Rup Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(11): 4395. CrossRef
Pontibacter mucosus sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment
Namita Nayyar, Puneet Kohli, Nitish Kumar Mahato, Rup Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(6): 2234. CrossRef
Pontibacter aydingkolensis sp. nov., isolated from soil of a salt lake
Ghenijan Osman, Tao Zhang, Kai Lou, Yan Gao, Wei Chang, Qing Lin, Hong-Mei Yang, Xiang-Dong Huo, Ning Wang
International Journal of Systematic and Evolutionary Microbiology .2016; 66(12): 5523. CrossRef
Pontibacter ummariensis sp. nov., isolated from a hexachlorocyclohexane-contaminated soil
N. K. Mahato, C. Tripathi, N. Nayyar, A. K. Singh, R. Lal
International Journal of Systematic and Evolutionary Microbiology.2016; 66(2): 1080. CrossRef
Pontibacter chinhatensis sp. nov., isolated from pond sediment containing discarded hexachlorocyclohexane isomer waste
Amit Kumar Singh, Nidhi Garg, Rup Lal
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_7): 2248. CrossRef
Pontibacter humi sp. nov., Isolated from Mountain Soil
Sathiyaraj Srinivasan, Jae-Jin Lee, Sang-Seob Lee, Myung Kyum Kim
Current Microbiology.2014; 69(3): 263. CrossRef
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Linghua Xu, Xian-Chun Zeng, Yao Nie, Xuesong Luo, Enmin Zhou, Lingli Zhou, Yunfan Pan, Wenjun Li, Paul Jaak Janssen
PLoS ONE.2014; 9(3): e92294. CrossRef
Pontibacter indicus sp. nov., isolated from hexachlorocyclohexane-contaminated soil
Amit Kumar Singh, Nidhi Garg, Pushp Lata, Roshan Kumar, Vivek Negi, Surendra Vikram, Rup Lal
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Pontibacter ruber sp. nov. and Pontibacter deserti sp. nov., isolated from the desert
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Pontibacter jeungdoensis sp. nov., isolated from a solar saltern in Korea
Yochan Joung, Haneul Kim, Beom-Il Lee, Heeyoung Kang, Tae Yong Jang, O-Seob Kwon, Kiseong Joh
Journal of Microbiology.2013; 51(4): 531. CrossRef
Pontibacter toksunensis sp. nov., isolated from soil, and emended descriptions of Pontibacter roseus and Pontibacter akesuensis
Lei Zhang, Lingfang Zhu, Linfang Wei, Changfu Li, Yao Wang, Xihui Shen
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Vatsala Dwivedi, Neha Niharika, Rup Lal
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Pontibacter saemangeumensis sp. nov., isolated from seawater
Ji Young Kang, Yochan Joung, Jeesun Chun, Haneul Kim, Kiseong Joh, Kwang Yeop Jahng
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Pontibacter ramchanderi sp. nov., isolated from hexachlorocyclohexane-contaminated pond sediment
Amit Kumar Singh, Nidhi Garg, Naseer Sangwan, Vivek Negi, Roshan Kumar, Surendra Vikram, Rup Lal
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Draft Genome Sequence of Pontibacter sp. nov. BAB1700, a Halotolerant, Industrially Important Bacterium
M. N. Joshi, A. C. Sharma, R. V. Pandya, R. P. Patel, Z. M. Saiyed, A. K. Saxena, S. B. Bagatharia
Journal of Bacteriology.2012; 194(22): 6329. CrossRef

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