- The Ruminococci: key symbionts of the gut ecosystem
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Alex J. La Reau , Garret Suen
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J. Microbiol. 2018;56(3):199-208. Published online February 28, 2018
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DOI: https://doi.org/10.1007/s12275-018-8024-4
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Mammalian gut microbial communities form intricate mutualisms
with their hosts, which have profound implications
on overall health. One group of important gut microbial mutualists
are bacteria in the genus Ruminococcus, which serve
to degrade and convert complex polysaccharides into a variety
of nutrients for their hosts. Isolated decades ago from the bovine
rumen, ruminococci have since been cultured from other
ruminant and non-ruminant sources, and next-generation
sequencing has further shown their distribution to be widespread
in a diversity of animal hosts. While most ruminococci
that have been studied are those capable of degrading
cellulose, much less is known about non-cellulolytic, nonruminant-
associated species, such as those found in humans.
Furthermore, a mechanistic understanding of the role of
Ruminococcus spp. in their respective hosts is still a work in
progress. This review highlights the broad work done on
species within the genus Ruminococcus with respect to their
physiology, phylogenetic relatedness, and their potential impact
on host health.
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Citations
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Ksenia Klimov-Kravtchenko, Tonatiuh Abimael Baltazar-Díaz, Jesse Haramati, Paula Alejandra Castaño-Jiménez, Fabiola Solorzano-Ibarra, Jose Manuel Rojas-Diaz, Nadia Tatiana Garcia-Barrientos, Jose Alfonso Cruz-Ramos, Carmen Gahia Facundo-Medina, Susana Del
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Xiaodong Zhang, Li Tang, Bluefin masell Freeman, Baikui Wang, Wenying Shen, Weifen Li
Journal of Microbiology and Biotechnology.2025;[Epub] CrossRef - Sex-Specific Differences in Gut Microbial Composition and Metabolism of Jiangshan Black Pigs
Yanan Zhang, Xian Wu, Dan Song, Panlin Wang, Haifeng Wang, Xiangchen Li
Microorganisms.2025; 13(11): 2551. CrossRef - Gut microbiota, nutrients, and depression
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Frontiers in Nutrition.2025;[Epub] CrossRef - Ruminococcus bromii alleviates constipation by pullulanase-driven resistant starch degradation and microbiota modulation
Rong Li, Qianqian Yang, Junqing He, Min Li, Qiang Ding, Kun Tian, Wei Yang, Guoxing Zhang, Aihua Guo, Man Gu, Qin Yu, Haidong Jia, Dezheng Xu, Hongju Yang, Huaping Xie, Weihua Chen, Zhi Liu
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Frontiers in Genetics.2024;[Epub] CrossRef - Effects of dietary addition of ellagic acid on rumen metabolism, nutrient apparent digestibility, and growth performance in Kazakh sheep
Wenjie Zhang, Feier Ren, Changjiang Zang, Fan Yang, Xuanyue Li, Xinxin Huang, Kaixu Chen, Xiaobin Li
Frontiers in Veterinary Science.2024;[Epub] CrossRef - WITHDRAWN: Isolation and Functional Study of Efficient Cellulose Degrading Bacteria from Horse Cecum Contents
Xiaoyue Li, Hui Li, Xiaoli Fang, Cunyuan Li, Jinming Yu, Jihong Dai, Xia Liu, Kaiping Liu, Ruyue He, Zhuang Liu, Wei Ni, Shengwei Hu
Heliyon.2024; : e28437. CrossRef - Crosstalk between innate immunity and rumen-fecal microbiota under the cold stress in goats
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Frontiers in Immunology.2024;[Epub] CrossRef - Development and evaluation of an ensemble model to identify host-related metadata from fecal microbiota of zoo-housed mammals
Franziska Zoelzer, Daniel dos Santos Monteiro, Paul Wilhelm Dierkes
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Jordana Nunes de Oliveira, Thatyane Mariano Rodrigues de Albuquerque, Marcos dos Santos Lima, Elma Regina Silva de Andrade Wartha, Mariana Monteiro, Yuri Mangueira do Nascimento, Josean Fechine Tavares, Marcelo Sobral da Silva, Evandro Leite de Souza, Jan
LWT.2024; 210: 116764. CrossRef - Traditional Chinese medicine improved diabetic kidney disease through targeting gut microbiota
Xia-Qing Wu, Lei Zhao, Yan-Long Zhao, Xin-Yao He, Liang Zou, Ying-Yong Zhao, Xia Li
Pharmaceutical Biology.2024; 62(1): 423. CrossRef - Natural Foraging Selection and Gut Microecology of Two Subterranean Rodents from the Eurasian Steppe in China
Zhenghaoni Shang, Kai Chen, Tingting Han, Fan Bu, Shanshan Sun, Na Zhu, Duhu Man, Ke Yang, Shuai Yuan, Heping Fu
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mSystems.2024;[Epub] CrossRef - Deciphering the influence of gut and oral microbiomes on menopause for healthy aging
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Food Chemistry.2024; 457: 140124. CrossRef - Mechanistic insights into inositol-mediated rumen function promotion and metabolic alteration using in vitro and in vivo models
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Frontiers in Veterinary Science.2024;[Epub] CrossRef - Gut Microbial Dysbiosis Differs in Two Distinct Cachectic Tumor-Bearing Models Consuming the Same Diet
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Nutrients.2024; 16(7): 1076. CrossRef - In Silico Analysis of Probiotic Bacteria Changes Across COVID-19 Severity Stages
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Microorganisms.2024; 12(11): 2353. CrossRef - Assessing the impact of hatching system and body weight on the growth performance, caecal short-chain fatty acids, and microbiota composition and functionality in broilers
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Brazilian Journal of Otorhinolaryngology.2024; 90(6): 101491. CrossRef -
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Archives of Physiology and Biochemistry.2024; 130(1): 70. CrossRef - Alteration of the gut microbial composition of critically endangered Malayan tigers (Panthera tigris jacksoni) in captivity during enrichment phase
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Journal of Agricultural and Food Chemistry.2024; 72(3): 1592. CrossRef - Metabolic and inflammatory perturbation of diabetes associated gut dysbiosis in people living with and without HIV infection
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Environmental Research.2024; 263: 120040. CrossRef - A Systematic Review of the Effect of Polyphenols on Alterations of the Intestinal Microbiota and Shared Bacterial Profiles Between Metabolic Syndrome and Acne
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Current Research in Food Science.2024; 9: 100863. CrossRef - Blackcurrants shape gut microbiota profile and reduce risk of postmenopausal osteoporosis via the gut-bone axis: Evidence from a pilot randomized controlled trial
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The Journal of Nutritional Biochemistry.2024; 133: 109701. CrossRef - Characterization of the follicular fluid microbiota based on culturomics and sequencing analysis
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Elio López-García, Antonio Benítez-Cabello, Antonio Pablo Arenas-de Larriva, Francisco Miguel Gutierrez-Mariscal, Pablo Pérez-Martínez, Elena María Yubero-Serrano, Antonio Garrido-Fernández, Francisco Noé Arroyo-López
Nutrients.2023; 15(8): 1931. CrossRef - Polysaccharides from small black soybean alleviating type 2 diabetes via modulation of gut microbiota and serum metabolism
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Frontiers in Microbiology.2023;[Epub] CrossRef - Definition of a microbial signature as a predictor of endoscopic post-surgical recurrence in patients with Crohn’s disease
Lia Oliver, Blau Camps, David Julià-Bergkvist, Joan Amoedo, Sara Ramió-Pujol, Marta Malagón, Anna Bahí, Paola Torres, Eugeni Domènech, Jordi Guardiola, Mariona Serra-Pagès, Jesus Garcia-Gil, Xavier Aldeguer
Frontiers in Molecular Medicine.2023;[Epub] CrossRef - Integrated Analysis of the Effects of Cecal Microbiota and Serum Metabolome on Market Weights of Chinese Native Chickens
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Animals.2023; 13(19): 3034. CrossRef - Effects of different manganese sources on nutrient digestibility, fecal bacterial community, and mineral excretion of weaning dairy calves
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Frontiers in Microbiology.2023;[Epub] CrossRef - Effects of an inulin fiber diet on the gut microbiome, colon, and inflammatory biomarkers in aged mice
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Experimental Gerontology.2023; 176: 112164. CrossRef - Gut Site and Gut Morphology Predict Microbiome Structure and Function in Ecologically Diverse Lemurs
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Microbial Ecology.2023; 85(4): 1608. CrossRef - Metaproteomic Analysis of Gut Resistome in the Cecal Microbiota of Fattening Pigs Raised without Antibiotics
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Microbiology Spectrum.2023;[Epub] CrossRef - Captivity restructures the gut microbiota of François' langurs (Trachypithecus francoisi)
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Frontiers in Microbiology.2023;[Epub] CrossRef - Effects of dietary Chinese herbal mixtures on productive performance, egg quality, immune status, caecal and offspring meconial microbiota of Wenchang breeder hens
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Frontiers in Veterinary Science.2023;[Epub] CrossRef - Associations of the gut microbiome with psychoneurological symptom cluster in women with gynecologic cancers: a longitudinal study
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Frontiers in Microbiology.2023;[Epub] CrossRef - Drinking Warm Water Promotes Performance by Regulating Ruminal Microbial Composition and Serum Metabolites in Yak Calves
Tianxu Liu, Qianqian Wang, Chenxi Gao, Shenfei Long, Tengfei He, Zhenlong Wu, Zhaohui Chen
Microorganisms.2023; 11(8): 2092. CrossRef - Effect of Clindamycin on Intestinal Microbiome and Miltefosine Pharmacology in Hamsters Infected with Leishmania infantum
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Animals.2023; 13(22): 3583. CrossRef - Orally Administrated Lactiplantibacillus plantarum BGAN8-Derived EPS-AN8 Ameliorates Cd Hazards in Rats
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International Journal of Molecular Sciences.2023; 24(3): 2845. CrossRef - Ligularia virgaurea improved nutrient digestion, ruminal fermentation, and bacterial composition in Tibetan sheep grazing on the Qinghai–Tibetan plateau in winter
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Animal Feed Science and Technology.2023; 299: 115628. CrossRef - Characterization of the Gut Microbiota in Urban Thai Individuals Reveals Enterotype-Specific Signature
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Environmental Research.2023; 229: 115925. CrossRef - Associations between the Gut Microbiome and Migraines in Children Aged 7-18 Years: An Analysis of the American Gut Project Cohort
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Medicine & Science in Sports & Exercise.2023; 55(4): 680. CrossRef - Revealing the developmental characterization of rumen microbiome and its host in newly received cattle during receiving period contributes to formulating precise nutritional strategies
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Tungs' Medical Journal.2023; 17(2): 76. CrossRef - Food desert residence has limited impact on veteran fecal microbiome composition: a U.S. Veteran Microbiome Project study
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European Journal of Clinical Investigation.2023;[Epub] CrossRef - Partially Alternative Feeding with Fermented Distillers’ Grains Modulates Gastrointestinal Flora and Metabolic Profile in Guanling Cattle
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Animals.2023; 13(22): 3437. CrossRef - Dysbiosis in gastrointestinal pathophysiology: Role of the gut microbiome in Gulf War Illness
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Journal of Cellular and Molecular Medicine.2023; 27(7): 891. CrossRef - Gastrointestinal Degradation and Toxicity of Disinfection Byproducts in Drinking Water Using In Vitro Models and the Roles of Gut Microbiota
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Environmental Science & Technology.2023; 57(43): 16219. CrossRef - Enhanced lupus progression in alcohol‐administered Fc gamma receptor‐IIb–deficiency lupus mice, partly through leaky gut‐induced inflammation
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Scientific Reports.2023;[Epub] CrossRef - Apolipoprotein E gene variants shape the association between dietary fibre intake and cognitive decline risk in community-dwelling older adults
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Frontiers in Aging Neuroscience.2023;[Epub] CrossRef - Changes of gut microbiota under different nutritional methods in elderly patients with severe COVID-19 and their relationship with prognosis
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Frontiers in Immunology.2023;[Epub] CrossRef - Stall-Feeding of Sheep on Restricted Grazing: Effects on Performance and Serum Metabolites, Ruminal Fermentation, and Fecal Microbiota
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Frontiers in Marine Science.2023;[Epub] CrossRef - Different roles of host and habitat in determining the microbial communities of plant-feeding true bugs
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Microbiome.2023;[Epub] CrossRef - Gut Microbiome Transplants and Their Health Impacts across Species
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BMC Medical Genomics.2023;[Epub] CrossRef - Targeting gut microbiota to alleviate neuroinflammation in Alzheimer’s disease
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Frontiers in Bioscience-Landmark.2022;[Epub] CrossRef - Microbial gut evaluation in an angolan paediatric population with sickle cell disease
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Frontiers in Microbiology.2022;[Epub] CrossRef - Changes to the microbiome of alfalfa during the growing season and after ensiling with Lentilactobacillus buchneri and Lentilactobacillus hilgardii inoculant
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Journal of Applied Microbiology.2022; 133(4): 2331. CrossRef - Evaluation of Antioxidant Capacity and Gut Microbiota Modulatory Effects of Different Kinds of Berries
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Antioxidants.2022; 11(5): 1020. CrossRef - Altered Immunoglobulin Repertoire and Decreased IgA Somatic Hypermutation in the Gut during Chronic HIV-1 Infection
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British Journal of Nutrition.2022; 127(3): 353. CrossRef - Specific Alterations of Gut Microbiota in Chinese Patients with Hypertension: A Systematic Review and Meta-Analysis
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Frontiers in Physiology.2022;[Epub] CrossRef - Red Raspberry and Fructo-Oligosaccharide Supplementation, Metabolic Biomarkers, and the Gut Microbiota in Adults with Prediabetes: A Randomized Crossover Clinical Trial
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Frontiers in Microbiology.2022;[Epub] CrossRef - Spotlight on the Gut Microbiome in Menopause: Current Insights
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International Journal of Women's Health.2022; Volume 14: 1059. CrossRef - Combinations of bacterial cultures, exogenous enzymes, and yeast-based feed additives and their impact on ruminal microbiome
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Translational Animal Science.2022;[Epub] CrossRef - Ingestion of remediated lead-contaminated soils affects the fecal microbiome of mice
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Science of The Total Environment.2022; 837: 155797. CrossRef - Exposure to crop production alters cecal prokaryotic microbiota, inflates virulome and resistome in wild prairie grouse
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Environmental Pollution.2022; 306: 119418. CrossRef - Saccharomyces Boulardii Ameliorates Non-alcoholic Steatohepatitis in Mice Induced by a Methionine-Choline-Deficient Diet Through Gut-Liver Axis
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Frontiers in Microbiology.2022;[Epub] CrossRef - Intestinal Dysbiosis in Patients with Histamine Intolerance
Sònia Sánchez-Pérez, Oriol Comas-Basté, Adriana Duelo, M. Teresa Veciana-Nogués, Mercedes Berlanga, M. Luz Latorre-Moratalla, M. Carmen Vidal-Carou
Nutrients.2022; 14(9): 1774. CrossRef - Cellulolytic bacteria in the large intestine of mammals
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Gut Microbes.2022;[Epub] CrossRef - Muskoxen homogenise soil microbial communities and affect the abundance of methanogens and methanotrophs
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Science of The Total Environment.2022; 827: 153877. CrossRef - Integrated Fecal Microbiome and Metabolomics Reveals a Novel Potential Biomarker for Predicting Tibial Dyschondroplasia in Chickens
Shucheng Huang, Chaodong Zhang, Tingting Xu, Aftab Shaukat, Yanfeng He, Pan Chen, Luxi Lin, Ke Yue, Qinqin Cao, Xishuai Tong
Frontiers in Physiology.2022;[Epub] CrossRef - Comparison of Metabolites and Gut Microbes between Patients with Ulcerative Colitis and Healthy Individuals for an Integrative Medicine Approach to Ulcerative Colitis—A Pilot Observational Clinical Study (STROBE Compliant)
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Diagnostics.2022; 12(8): 1969. CrossRef - The association of hyperketonemia with fecal and rumen microbiota at time of diagnosis in a case-control cohort of early lactation cows
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BMC Veterinary Research.2022;[Epub] CrossRef - Gut metagenome profile of the Nunavik Inuit youth is distinct from industrial and non-industrial counterparts
Jehane Y. Abed, Thibaud Godon, Fadwa Mehdaoui, Pier-Luc Plante, Maurice Boissinot, Michel G. Bergeron, Richard E. Bélanger, Gina Muckle, Natalia Poliakova, Pierre Ayotte, Jacques Corbeil, Elsa Rousseau
Communications Biology.2022;[Epub] CrossRef - The influence of exercise training volume alterations on the gut microbiome in highly‐trained middle‐distance runners
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European Journal of Sport Science.2022; 22(8): 1222. CrossRef - Hypomagnetic Field Exposure Affecting Gut Microbiota, Reactive Oxygen Species Levels, and Colonic Cell Proliferation in Mice
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Bioelectromagnetics.2022; 43(8): 462. CrossRef - Analysis of 16S rRNA gene sequencing data for the taxonomic characterization of the vaginal and the fecal microbial communities in Hanwoo
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Animal Bioscience.2022; 35(11): 1808. CrossRef - Paeonia lactiflora Pallas extract alleviates antibiotics and DNCB-induced atopic dermatitis symptoms by suppressing inflammation and changing the gut microbiota composition in mice
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Biomedicine & Pharmacotherapy.2022; 154: 113574. CrossRef - Influence of free and immobilized chitosan on a defined human gut microbial ecosystem
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Food Research International.2022; 161: 111890. CrossRef - How to Maintain a Healthy Gut Microbiome in Children with Cancer? Gut Microbiome Association with Diet in Children with Solid Tumors Postchemotherapy
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OMICS: A Journal of Integrative Biology.2022; 26(4): 236. CrossRef - Influence of Chlorella vulgaris on growth, digestibility and gut morphology and microbiota of weaned piglet
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Applied Microbiology and Biotechnology.2022; 106(3): 1325. CrossRef - Seasonal and geographical differences in the ruminal microbial and chloroplast composition of sika deer (Cervus nippon) in Japan
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Scientific Reports.2022;[Epub] CrossRef - Consistent Alterations of Human Fecal Microbes After Transplantation into Germ-Free Mice
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Genomics, Proteomics & Bioinformatics.2022; 20(2): 382. CrossRef - Meconium Microbiota Composition and Association with Birth Delivery Mode
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Advanced Gut & Microbiome Research.2022; 2022: 1. CrossRef - Characterization of presence and activity of microRNAs in the rumen of cattle hints at possible host-microbiota cross-talk mechanism
Sara Ricci, Renée M. Petri, Cátia Pacífico, Ezequias Castillo-Lopez, Raul Rivera-Chacon, Arife Sener-Aydemir, Nicole Reisinger, Qendrim Zebeli, Susanne Kreuzer-Redmer
Scientific Reports.2022;[Epub] CrossRef - Commensal Intestinal Protozoa—Underestimated Members of the Gut Microbial Community
Magdalena Dubik, Bartosz Pilecki, Jesper Bonnet Moeller
Biology.2022; 11(12): 1742. CrossRef - Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems
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Animal Microbiome.2022;[Epub] CrossRef - The gut microbiota as a target to improve health conditions in a confined environment
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Frontiers in Microbiology.2022;[Epub] CrossRef - Characterization of rumen, fecal, and milk microbiota in lactating dairy cows
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Frontiers in Microbiology.2022;[Epub] CrossRef - Analysis of Faecal Microbiota and Small ncRNAs in Autism: Detection of miRNAs and piRNAs with Possible Implications in Host–Gut Microbiota Cross-Talk
Federica Chiappori, Francesca Anna Cupaioli, Arianna Consiglio, Noemi Di Nanni, Ettore Mosca, Vito Flavio Licciulli, Alessandra Mezzelani
Nutrients.2022; 14(7): 1340. CrossRef - Microbiota Composition of Mucosa and Interactions between the Microbes of the Different Gut Segments Could Be a Factor to Modulate the Growth Rate of Broiler Chickens
Valéria Farkas, Gábor Csitári, László Menyhárt, Nikoletta Such, László Pál, Ferenc Husvéth, Mohamed Ali Rawash, Ákos Mezőlaki, Károly Dublecz
Animals.2022; 12(10): 1296. CrossRef - Comparative Analysis of Gut Microbial Composition and Functions in Przewalski’s Gazelle (Procapra przewalskii) From Various Habitats
Jingjie Zhang, Hongmei Gao, Feng Jiang, Daoxin Liu, Yuansheng Hou, Xiangwen Chi, Wen Qin, Pengfei Song, Zhenyuan Cai, Tongzuo Zhang
Frontiers in Microbiology.2022;[Epub] CrossRef - The primate gut mycobiome-bacteriome interface is impacted by environmental and subsistence factors
Ashok K. Sharma, Sam Davison, Barbora Pafco, Jonathan B. Clayton, Jessica M. Rothman, Matthew R. McLennan, Marie Cibot, Terence Fuh, Roman Vodicka, Carolyn Jost Robinson, Klara Petrzelkova, Andres Gomez
npj Biofilms and Microbiomes.2022;[Epub] CrossRef - A high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2
Werner C. Albrich, Tarini Shankar Ghosh, Sinead Ahearn-Ford, Flora Mikaeloff, Nonhlanhla Lunjani, Brian Forde, Noémie Suh, Gian-Reto Kleger, Urs Pietsch, Manuel Frischknecht, Christian Garzoni, Rossella Forlenza, Mary Horgan, Corinna Sadlier, Tommaso Roch
Gut Microbes.2022;[Epub] CrossRef - Gut Health and Microbiota in Out-of-Season Atlantic Salmon (Salmo salar L.) Smolts Before and After Seawater Transfer Under Commercial Arctic Conditions: Modulation by Functional Feed Ingredients
Jie Wang, Alexander Jaramillo-Torres, Yanxian Li, Øyvind Jakobsen Brevik, Jan Vidar Jakobsen, Trond M. Kortner, Åshild Krogdahl
Frontiers in Marine Science.2022;[Epub] CrossRef - Bacterial communities in the gastrointestinal tract segments of helminth-resistant and helminth-susceptible sheep
Erwin A. Paz, Eng Guan Chua, Shamshad Ul Hassan, Johan C. Greeff, Dieter G. Palmer, Shimin Liu, Binit Lamichhane, Néstor Sepúlveda, Junhua Liu, Chin Yen Tay, Graeme B. Martin
Animal Microbiome.2022;[Epub] CrossRef - Effects of spatially heterogeneous warming on gut microbiota, nutrition and gene flow of a heat-sensitive ungulate population
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Science of The Total Environment.2022; 806: 150537. CrossRef - Albuca Bracteate Polysaccharides Synergistically Enhance the Anti-Tumor Efficacy of 5-Fluorouracil Against Colorectal Cancer by Modulating β-Catenin Signaling and Intestinal Flora
Xinyu Yuan, Jiao Xue, Yingxia Tan, Qingguo Yang, Ziyan Qin, Xiaodong Bao, Shengkai Li, Liangliang Pan, Ziqing Jiang, Yu Wang, Yongliang Lou, Lei Jiang, Jimei Du
Frontiers in Pharmacology.2021;[Epub] CrossRef - The Impact of Enriched Resistant Starch Type‐2 Cookies on the Gut Microbiome in Hemodialysis Patients: A Randomized Controlled Trial
Julie Ann Kemp, Bruna Regis de Paiva, Henrique Fragoso dos Santos, Hugo Emiliano de Jesus, Hannah Craven, Umer Z. Ijaz, Natalia Alvarenga Borges, Paul G. Shiels, Denise Mafra
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Protein & Cell.2021; 12(5): 374. CrossRef - Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets
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International Journal of Systematic and Evolutionary Microbiology.2021;[Epub] CrossRef - The potential of outdoor environments to supply beneficial butyrate-producing bacteria to humans
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Veterinary Parasitology.2021; 300: 109579. CrossRef - Co-digestive performance of food waste and hydrothermal pretreated corn cob
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Fecal Metabolome Signature in the HIV-1 Elite Control Phenotype: Enrichment of Dipeptides Acts as an HIV-1 Antagonist but a
Prevotella
Agonist
Maike Sperk, Anoop T. Ambikan, Shilpa Ray, Kamal Singh, Flora Mikaeloff, Rafael Ceña Diez, Ashwathy Narayanan, Jan Vesterbacka, Piotr Nowak, Anders Sönnerborg, Ujjwal Neogi, Viviana Simon
Journal of Virology.2021;[Epub] CrossRef - Transformation of fish waste protein to Hermetia illucens protein improves the efficacy of poultry by-products in the culture of juvenile barramundi, Lates calcarifer
Md Reaz Chaklader, Janet Howieson, Md Javed Foysal, Ravi Fotedar
Science of The Total Environment.2021; 796: 149045. CrossRef - Analysis of appendectomy samples identified dysbiosis in acute appendicitis
Shinya MUNAKATA, Mari TOHYA, Hirokazu MATSUZAWA, Yuki TSUCHIYA, Kota AMEMIYA, Toshiaki HAGIWARA, Daisuke MOTOOKA, Shota NAKAMURA, Kazuhiro SAKAMOTO, Shin WATANABE
Bioscience of Microbiota, Food and Health.2021; 40(2): 92. CrossRef - Conditions stimulating neutral detergent fiber degradation by dosing branched-chain volatile fatty acids. III: Relation with solid passage rate and pH on prokaryotic fatty acid profile and community in continuous culture
Y. Roman-Garcia, K.E. Mitchell, C. Lee, M.T. Socha, T. Park, B.A. Wenner, J.L. Firkins
Journal of Dairy Science.2021; 104(9): 9868. CrossRef - In-Feed Supplementation of Resin Acid-Enriched Composition Modulates Gut Microbiota, Improves Growth Performance, and Reduces Post-Weaning Diarrhea and Gut Inflammation in Piglets
Md Karim Uddin, Shah Hasan, Md. Rayhan Mahmud, Olli Peltoniemi, Claudio Oliviero
Animals.2021; 11(9): 2511. CrossRef - Insights into the removal of pharmaceutically active compounds from sewage sludge by two-stage mesophilic anaerobic digestion
M.J. Gallardo-Altamirano, P. Maza-Márquez, N. Montemurro, S. Pérez, B. Rodelas, F. Osorio, C. Pozo
Science of The Total Environment.2021; 789: 147869. CrossRef - Marked Seasonal Variation in Structure and Function of Gut Microbiota in Forest and Alpine Musk Deer
Feng Jiang, Hongmei Gao, Wen Qin, Pengfei Song, Haijing Wang, Jingjie Zhang, Daoxin Liu, Dong Wang, Tongzuo Zhang
Frontiers in Microbiology.2021;[Epub] CrossRef - Environmentally enriched housing conditions affect pig welfare, immune system and gut microbiota in early life
Caifang Wen, Ingrid van Dixhoorn, Dirkjan Schokker, Henri Woelders, Norbert Stockhofe-Zurwieden, Johanna M. J. Rebel, Hauke Smidt
Animal Microbiome.2021;[Epub] CrossRef - Effects of Iron and Zinc Biofortified Foods on Gut Microbiota In Vivo (Gallus gallus): A Systematic Review
Mariana Juste Contin Gomes, Hércia Stampini Duarte Martino, Elad Tako
Nutrients.2021; 13(1): 189. CrossRef - Characterization of a novel Pantoea symbiont allows inference of a pattern of convergent genome reduction in bacteria associated with Pentatomidae
Marzieh Kashkouli, Michele Castelli, Anna M. Floriano, Claudio Bandi, Sara Epis, Yaghoub Fathipour, Mohammad Mehrabadi, Davide Sassera
Environmental Microbiology.2021; 23(1): 36. CrossRef - Gut Microbiota-Derived
Metabolite Signature in Suckling
and Weaned Piglets
Martin Beaumont, Laurent Cauquil, Allan Bertide, Ingrid Ahn, Céline Barilly, Lisa Gil, Cécile Canlet, Olivier Zemb, Géraldine Pascal, Arnaud Samson, Sylvie Combes
Journal of Proteome Research.2021; 20(1): 982. CrossRef - Zinc Status Index (ZSI) for Quantification of Zinc Physiological Status
Jacquelyn Cheng, Haim Bar, Elad Tako
Nutrients.2021; 13(10): 3399. CrossRef - Time-course analysis of metabolomic and microbial responses in anaerobic digesters exposed to ammonia
Olivier Chapleur, Simon Poirier, Angéline Guenne, Kim-Anh Lê Cao
Chemosphere.2021; 283: 131309. CrossRef -
Ruminococcus bovis sp. nov., a novel species of amylolytic Ruminococcus isolated from the rumen of a dairy cow
James Gaffney, Jordan Embree, Sean Gilmore, Mallory Embree
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Fecal Microbiota Perspective for Evaluation of Prebiotic Potential of Bamboo Hemicellulose Hydrolysate in Mice: A Preliminary Study
Nao Ikeyama, Mitsuo Sakamoto, Moriya Ohkuma, Shigeru Hiramoto, Jianpeng Wang, Shigenobu Tone, Kiwamu Shiiba
Microorganisms.2021; 9(5): 888. CrossRef - Acceptive Immunity: The Role of Fucosylated Glycans in Human Host–Microbiome Interactions
Svetlana Kononova, Ekaterina Litvinova, Timur Vakhitov, Maria Skalinskaya, Stanislav Sitkin
International Journal of Molecular Sciences.2021; 22(8): 3854. CrossRef - ZiBuPiYin Recipe Prevented and Treated Cognitive Decline in ZDF Rats With Diabetes-Associated Cognitive Decline via Microbiota–Gut–Brain Axis Dialogue
Tingting Bi, Ruiqi Feng, Libin Zhan, Weiming Ren, Xiaoguang Lu
Frontiers in Cell and Developmental Biology.2021;[Epub] CrossRef - Antibiotic resistance, antimicrobial residues, and bacterial community diversity in pasture-raised poultry, swine, and beef cattle manures
Michael James Rothrock, Byeng Ryel Min, Lana Castleberry, Heidi Waldrip, David Parker, David Brauer, Dipti Pitta, Nagaraju Indugu
Journal of Animal Science.2021;[Epub] CrossRef - Succession Analysis of Gut Microbiota Structure of Participants from Long-Lived Families in Hechi, Guangxi, China
Minhong Ren, He Li, Zhen Fu, Quanyang Li
Microorganisms.2021; 9(12): 2524. CrossRef - Chemical Composition of Tomato Seed Flours, and Their Radical Scavenging, Anti-Inflammatory and Gut Microbiota Modulating Properties
Uyory Choe, Jianghao Sun, Elena Bailoni, Pei Chen, Yanfang Li, Boyan Gao, Thomas T. Y. Wang, Jiajia Rao, Liangli (Lucy) Yu
Molecules.2021; 26(5): 1478. CrossRef - Type IV pili are widespread among non‐pathogenic Gram‐positive gut bacteria with diverse carbohydrate utilization patterns
Vita Rozman, Tomaž Accetto, Sylvia H. Duncan, Harry J. Flint, Maša Vodovnik
Environmental Microbiology.2021; 23(3): 1527. CrossRef - Microbiota and Metabolites as Factors Influencing Blood Pressure Regulation
Tao Yang, Saroj Chakraborty, Juthika Mandal, Xue Mei, Bina Joe
Comprehensive Physiology.2021; 11(2): 1731. CrossRef - Steam Explosion Pretreatment Changes Ruminal Fermentation in vitro of Corn Stover by Shifting Archaeal and Bacterial Community Structure
Kun Wang, Xuemei Nan, Jinjin Tong, Guangyong Zhao, Linshu Jiang, Benhai Xiong
Frontiers in Microbiology.2020;[Epub] CrossRef - Rumen Microbiome Composition Is Altered in Sheep Divergent in Feed Efficiency
Steven McLoughlin, Charles Spillane, Noel Claffey, Paul E. Smith, Tommy O’Rourke, Michael G. Diskin, Sinéad M. Waters
Frontiers in Microbiology.2020;[Epub] CrossRef - Gut Microbiome and Serum Metabolome Analyses Identify Unsaturated Fatty Acids and Butanoate Metabolism Induced by Gut Microbiota in Patients With Chronic Spontaneous Urticaria
Detong Wang, Shuping Guo, Hongxia He, Li Gong, Hongzhou Cui
Frontiers in Cellular and Infection Microbiology.2020;[Epub] CrossRef - SOD1 deficiency alters gastrointestinal microbiota and metabolites in mice
Haruka Sagi, Shuichi Shibuya, Tamotsu Kato, Yumiko Nakanishi, Arisa Tsuboi, Shigeharu Moriya, Hiroshi Ohno, Hirokuni Miyamoto, Hiroaki Kodama, Takahiko Shimizu
Experimental Gerontology.2020; 130: 110795. CrossRef - Multi-omics Approaches To Decipher the Impact of Diet and Host Physiology on the Mammalian Gut Microbiome
Christian Milani, Giulia Alessandri, Leonardo Mancabelli, Marta Mangifesta, Gabriele Andrea Lugli, Alice Viappiani, Giulia Longhi, Rosaria Anzalone, Sabrina Duranti, Francesca Turroni, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura, Johanna
Applied and Environmental Microbiology.2020;[Epub] CrossRef - Developmental symbiosis facilitates the multiple origins of herbivory
Scott F. Gilbert
Evolution & Development.2020; 22(1-2): 154. CrossRef - Puffer Fish Gut Microbiota Studies Revealed Unique Bacterial Co-Occurrence Patterns and New Insights on Tetrodotoxin Producers
Zhenchi Li, Jinglin Tian, Yukun Lai, Chiu-Hong Lee, Zongwei Cai, Chun-Fai Yu
Marine Drugs.2020; 18(5): 278. CrossRef - Biodegradability of woody film produced by solvent volatilisation of Japanese Beech solution
Yuri Nishiwaki-Akine, Sui Kanazawa, Norihisa Matsuura, Ryoko Yamamoto-Ikemoto
Scientific Reports.2020;[Epub] CrossRef - The effect of a diet based on rice straw co-fermented with probiotics and enzymes versus a fresh corn Stover-based diet on the rumen bacterial community and metabolites of beef cattle
Yongqiang Hu, Yuyong He, Shan Gao, Zhiqiang Liao, Tao Lai, Haimei Zhou, Qianlin Chen, Lingyu Li, Haijun Gao, Wei Lu
Scientific Reports.2020;[Epub] CrossRef - Comparison of serum microbiome composition in bipolar and major depressive disorders
Sang Jin Rhee, Hyeyoung Kim, Yunna Lee, Hyun Jeong Lee, C. Hyung Keun Park, Jinho Yang, Yoon-Keun Kim, Sungmin Kym, Yong Min Ahn
Journal of Psychiatric Research.2020; 123: 31. CrossRef - Intestinal flora alterations in patients with early chronic kidney disease: a case-control study among the Han population in southwestern China
Qiongdan Hu, Kaiyan Wu, Wei Pan, Yan Zeng, Keqin Hu, Dingguo Chen, Xinchun Huang, Qiong Zhang
Journal of International Medical Research.2020;[Epub] CrossRef - Gut microbiota derived metabolites contribute to intestinal barrier maturation at the suckling-to-weaning transition
Martin Beaumont, Charlotte Paës, Eloïse Mussard, Christelle Knudsen, Laurent Cauquil, Patrick Aymard, Céline Barilly, Béatrice Gabinaud, Olivier Zemb, Sandra Fourre, Roselyne Gautier, Corinne Lencina, Hélène Eutamène, Vassilia Theodorou, Cécile Canlet, Sy
Gut Microbes.2020; 11(5): 1268. CrossRef - Towards a psychobiotic therapy for depression: Bifidobacterium breve CCFM1025 reverses chronic stress-induced depressive symptoms and gut microbial abnormalities in mice
Peijun Tian, Kenneth J. O'Riordan, Yuan-kun Lee, Gang Wang, Jianxin Zhao, Hao Zhang, John F. Cryan, Wei Chen
Neurobiology of Stress.2020; 12: 100216. CrossRef - Anti-Inflammatory Activity of a Peptide from Skipjack (Katsuwonus pelamis)
Zhi-gao Wang, Xiao-guo Ying, Peng Gao, Chun-li Wang, Yi-fan Wang, Xin-wei Yu, Jing Chen, Bin Wang, Hong-yu Luo
Marine Drugs.2019; 17(10): 582. CrossRef - Maternal Dietary Protein Intake Influences Milk and Offspring Gut Microbial Diversity in a Rat (Rattus norvegicus) Model
Matthew Warren, Haley Hallowell, Keah Higgins, Mark Liles, Wendy Hood
Nutrients.2019; 11(9): 2257. CrossRef - Response of Beef Cattle Fecal Microbiota to Grazing on Toxic Tall Fescue
Ryan S. Mote, Nicholas S. Hill, Joseph H. Skarlupka, Zachary B. Turner, Zachary P. Sanders, Dean P. Jones, Garret Suen, Nikolay M. Filipov, Charles M. Dozois
Applied and Environmental Microbiology.2019;[Epub] CrossRef - Ingestion of Bifidobacterium longum subspecies infantis strain CCFM687 regulated emotional behavior and the central BDNF pathway in chronic stress-induced depressive mice through reshaping the gut microbiota
Peijun Tian, Renying Zou, Linhong Song, Xu Zhang, Bin Jiang, Gang Wang, Yuan-kun Lee, Jianxin Zhao, Hao Zhang, Wei Chen
Food & Function.2019; 10(11): 7588. CrossRef - Synergistic effects of APOE and sex on the gut microbiome of young EFAD transgenic mice
Juan Maldonado Weng, Ishita Parikh, Ankur Naqib, Jason York, Stefan J. Green, Steven Estus, Mary Jo LaDu
Molecular Neurodegeneration.2019;[Epub] CrossRef - Comparative analysis of the gut microbiota in centenarians and young adults shows a common signature across genotypically non-related populations
Ngangyola Tuikhar, Santosh Keisam, Rajendra Kumar Labala, Imrat, Padma Ramakrishnan, Moirangthem Cha Arunkumar, Giasuddin Ahmed, Elena Biagi, Kumaraswamy Jeyaram
Mechanisms of Ageing and Development.2019; 179: 23. CrossRef - Gut microbiomes and their metabolites shape human and animal health
Woojun Park
Journal of Microbiology.2018; 56(3): 151. CrossRef
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