- Brachybacterium kimchii sp. nov. and Brachybacterium halotolerans subsp. kimchii subsp. nov., isolated from the Korean fermented vegetables, kimchi, and description of Brachybacterium halotolerans subsp. halotolerans subsp. nov.
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Yujin Kim , Yeon Bee Kim , Juseok Kim , Joon Yong Kim , Tae Woong Whon , Won-Hyong Chung , Eun-Ji Song , Young-Do Nam , Se Hee Lee , Seong Woon Roh
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J. Microbiol. 2022;60(7):678-688. Published online July 4, 2022
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DOI: https://doi.org/10.1007/s12275-022-1581-6
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Two Gram-stain-positive, oxidase-negative, catalase-positive,
and coccus-shaped bacterial strains, designated CBA3104T
and CBA3105T, were isolated from kimchi. Strain CBA3104T
and CBA3105T grew at 10–35°C (optimum, 25°C and 30°C,
respectively), at pH 6.0–8.5 (optimum, pH 6.5), and in the
presence of 0–15% (w/v) NaCl (optimum, 5%). A phylogenetic
analysis based on 16S rRNA gene sequences revealed
that strain CBA3104T formed a distinct phylogenetic lineage
within the genus Brachybacterium whereas strain CBA3105T
was closely positioned with Brachybacterium halotolerans
MASK1Z-5T. The 16S rRNA gene sequence similarity between
strains CBA3104T and CBA3105T was 99.9%, but ANI
and dDDH values between strains CBA3104T and CBA3105T
were 93.61% and 51.5%, respectively. Strain CBA3104T showed
lower ANI and dDDH values than species delineation against
three closely related strains and type species of the genus
Brachybacterium, however, strain CBA3105T showed 96.63%
ANI value and 69.6% dDDH value with Brachybacterium
halotolerans MASK1Z-5T. Among biochemical analysis results,
strain CBA3104T could uniquely utilize bromo-succinic
acid whereas only strain CBA3105T was positive for alkaline
phosphatase and α-fucosidase among two novel strains, closely
related strains, and type species of the genus Brachybacterium.
Compared with strain CBA3105T and Brachybacterium
halotolerans JCM 34339T, strain CBA3105T was differentially
positive for acid production of D-arabinose, D-adonitol, and
potassium 5-ketogluconate and enzyme activity of β-glucuronidase.
Both strains contained menaquinone-7 as the dominant
quinone. The cell-wall peptidoglycan of two novel
strains contained meso-diaminopimelic acid. The major fatty
acids of strains CBA3104T and CBA3105T were anteiso-C15:0,
anteiso-C17:0, and iso-C16:0. The major polar lipids of both
strains were phosphatidylglycerol and diphosphatidylglycerol.
Strain CBA3104T possessed a uniquely higher abundance of
tRNA (97 tRNAs) than four Brachybacterium strains used for
comparative taxonomic analysis (54–62 tRNAs). Both the
CBA3104T and CBA3105T strain harbored various oxidoreductase,
transferase, hydrolase, and lyase as strain-specific
functional genes compared to closely related strains and Brachybacterium
type species. The results of biochemical/physiological,
chemotaxonomic, and genomic analyses demonstrated
that strains CBA3104T and CBA3105T represent a novel species
of the genus Brachybacterium and a novel subspecies of
B. halotolerans, respectively, for which the names Brachybacterium
kimchii sp. nov. and B. halotolerans subsp. kimchii
subsp. nov. are proposed. The type strains of the novel
species and the novel subspecies are CBA3104T (= KCCM
43417T = JCM 34759T) and CBA3105T (= KCCM 43418T =
JCM 34760T), respectively.
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Citations
Citations to this article as recorded by  - Metagenomic Insights into the Taxonomic and Functional Features of Traditional Fermented Milk Products from Russia
Alexander G. Elcheninov, Kseniya S. Zayulina, Alexandra A. Klyukina, Mariia K. Kremneva, Ilya V. Kublanov, Tatiana V. Kochetkova
Microorganisms.2023; 12(1): 16. CrossRef - Validation List no. 208. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Complete Genome Sequence of
Brachybacterium
sp. Strain NBEC-018, Isolated from Nematode-Infected Potatoes
Ling Chen, Yueying Wang, Nanxi Liu, Lei Zhu, Yong Min, Yimin Qiu, Yuxi Tian, Xiaoyan Liu, David Rasko
Microbiology Resource Announcements.2022;[Epub] CrossRef
- Probiotics in human health and disease: from nutribiotics to pharmabiotics
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Eun-Sook Lee , Eun-Ji Song , Young-Do Nam , So-Young Lee
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J. Microbiol. 2018;56(11):773-782. Published online October 24, 2018
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DOI: https://doi.org/10.1007/s12275-018-8293-y
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Probiotics are the most useful tools for balancing the gut
microbiota and thereby influencing human health and disease.
Probiotics have a range of effects, from those on nutritional
status to medical conditions throughout the body from
the gut to non-intestinal body sites such as the brain and skin.
Research interest in probiotics with nutritive claims (categorized
as nutribiotics) has evolved into interest in therapeutic
and pharmacological probiotics with health claims (pharmabiotics).
The concept of pharmabiotics emerged only two
decades ago, and the new categorization of probiotics to nutribiotics
and pharmabiotics was recently suggested, which
are under the different regulation depending on that they are
food or drug. Information of the gut microbiome has been
continuously accumulating, which will make possible the gut
microbiome-based healthcare in the future, when nutribiotics
show potential for maintaining health while pharmabiotics
are effective therapeutic tools for human diseases. This review
describes the current understanding in the conceptualization
and classification of probiotics. Here, we reviewed probiotics
as nutribiotics with nutritional functions and pharmabiotics
with pharmaceutic functions in different diseases.
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Citations to this article as recorded by - Exploring the Multitude: A Review on Different Categorization of Probiotics
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Shin-Yae Choi, Dahae Hong, Jin Seok Moon, O-Hyun Ban, Hee-Won Bae, Tae-Yoon Kim, You-Hee Cho
Journal of Microbiology.2026; 64(6): e2605002. CrossRef - Thwarting the biothreat in the 21st century: means and methods
Manousos E. Kambouris, Aristea Velegraki, George P. Patrinos
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Probiotics and Antimicrobial Proteins.2025; 17(1): 341. CrossRef - Unraveling the role of the gut microbiome in pregnancy disorders: insights and implications
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International Journal of Molecular Sciences.2025; 26(14): 6745. CrossRef - Skin microbiome and skin aging: emerging strategies for manipulation
Zhiyan Wang, Fengming Yuan, Xuewei Zhong, Shi Feng, Tao Song
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Nada Elbaz, Elwy A. Ashour, Samar S. Bassiony, Ahmed I. Elsherbeni, Samir A. Mahgoub, Ali O. Osman, Islam Sabike, Naif A. Al-Gabri, Mahmoud Moustafa, Mohammed Al-Shehri, Mohamed E. Abd El-Hack
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Journal of the Science of Food and Agriculture.2024; 104(4): 1861. CrossRef - Disturbance of the human gut microbiota in patients with Myotonic Dystrophy type 1
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Computational and Structural Biotechnology Journal.2024; 23: 2097. CrossRef - Lactic acid bacteria reduce bacterial diarrhea in rabbits via enhancing immune function and restoring intestinal microbiota homeostasis
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BMC Veterinary Research.2024;[Epub] CrossRef - Lipoteichoic Acid from Lacticaseibacillus rhamnosus GG as a Novel Intracanal Medicament Targeting Enterococcus faecalis Biofilm Formation
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Hans Journal of Food and Nutrition Science.2024; 13(04): 429. CrossRef - Impact of oligosaccharides on probiotic properties and B vitamins production: a comprehensive assessment of probiotic strains
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International Journal of Food Science and Technology.2024; 59(9): 6044. CrossRef - ¿Cómo determinar si un yogurt tiene probióticos?
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Scientific Works.2024; 88(1): 19. CrossRef - Complete genome analysis of Lactiplantibacillus plantarum VHProbi P06, a novel probiotic that resists Streptococcus pneumoniae in the upper respiratory tract
Shudong Peng, Chaoqun Guo, Hongchang Cui, Zhi Duan
International Journal of Biological Macromolecules.2023; 253: 127320. CrossRef - Carbon dots labeled Lactiplantibacillus plantarum: a fluorescent multifunctional biocarrier for anticancer drug delivery
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Weiwei Ma, Wenwen Li, Shuang Yu, Hongsheng Bian, Yanyan Wang, Yang Jin, Zhenhua Zhang, Qing Ma, Lili Huang
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Scripta Medica.2023; 54(4): 389. CrossRef - Comprehensive in silico analysis of the probiotics, and preparation of compound probiotics-Polygonatum sibiricum saponin with hypoglycemic properties
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Shalaka Bhawal, Ankita Kumari, Shikha Rana, Suman Kapila, Rajeev Kapila
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Carlos Enrique Galeana-Patiño, Mario Isidoro Ortiz, Raquel Cariño-Cortés, Iris Cristina López-Santillán, Javier Castro-Rosas, Carlos Alberto Gómez-Aldapa, Víctor Manuel Muñoz-Pérez
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Probiotics and Antimicrobial Proteins.2023; 15(5): 1092. CrossRef - Beyond probiotics: a narrative review on an era of revolution
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International Journal of Obesity.2022; 46(11): 2006. CrossRef - Evaluation of the composition and quality of watermelon and mango juices fermented by Levilactobacillus brevis, Lacticaseibacillus casei and Pediococcus pentosaceus and subsequent simulated digestion and storage
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International Journal of Food Science & Technology.2022; 57(8): 5461. CrossRef - Impact of gut microbiome on skin health: gut-skin axis observed through the lenses of therapeutics and skin diseases
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Mujeeb Ur Rehman, Shakira Ghazanfar, Rizwan Ul Haq, Shakir Ullah, Salman Khan, Jianbo Wu, Waqar Ahmad, Muhammad Khalid Tipu
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Yasmina Bourebaba, Krzysztof Marycz, Malwina Mularczyk, Lynda Bourebaba
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Postępy Mikrobiologii - Advancements of Microbiology.2022; 61(1): 21. CrossRef - Are Probiotics Needed in Nephrology?
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Biomedicine & Pharmacotherapy.2021; 137: 111393. CrossRef - Nanonutraceuticals: The New Frontier of Supplementary Food
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Frontiers in Microbiology.2021;[Epub] CrossRef - Novel Insights for Metabiotics Production by Using Artisanal Probiotic Cultures
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Shiman Jiang, Lingzhi Cai, Longxian Lv, Lanjuan Li
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Dong-Yun Lee, Jeon-Kyung Kim, Soo-Won Yun, Myung Joo Han, Dong-Hyun Kim
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Preventive Nutrition and Food Science.2021; 26(2): 121. CrossRef - The skin microbiome and the gut-skin axis
Shivani Sinha, Gloria Lin, Katalin Ferenczi
Clinics in Dermatology.2021; 39(5): 829. CrossRef - Lactiplantibacillus plantarum LRCC5314 includes a gene for serotonin biosynthesis via the tryptophan metabolic pathway
Jiseon Jeong, Yunjeong Lee, Seokmin Yoon, Jong-Hwa Kim, Wonyong Kim
Journal of Microbiology.2021; 59(12): 1092. CrossRef - Next-Generation Probiotics and Their Metabolites in COVID-19
Thomas Gautier, Sandrine David-Le Gall, Alaa Sweidan, Zohreh Tamanai-Shacoori, Anne Jolivet-Gougeon, Olivier Loréal, Latifa Bousarghin
Microorganisms.2021; 9(5): 941. CrossRef - Effects of Lactobacillus acidophilus NCFM and Bifidobacterium lactis Bi-07 Supplementation on Nutritional and Metabolic Parameters in the Early Postoperative Period after Roux-en-Y Gastric Bypass: a Randomized, Double-Blind, Placebo-Controlled Trial
Marília Rizzon Zaparolli Ramos, Lígia de Oliveira Carlos, Nathalia Ramori Farinha Wagner, Ingrid Felicidade, Magda Ramos da Cruz, Cesar Augusto Taconeli, Ricardo Fernandes, Alcides José Branco Filho, Antônio Carlos Ligocki Campos
Obesity Surgery.2021; 31(5): 2105. CrossRef - The Regulation of Host Intestinal Microbiota by Polyphenols in the Development and Prevention of Chronic Kidney Disease
Naren Bao, Fangjie Chen, Di Dai
Frontiers in Immunology.2020;[Epub] CrossRef - Vitamin D Modulates Intestinal Microbiota in Inflammatory Bowel Diseases
Carolina Battistini, Rafael Ballan, Marcos Edgar Herkenhoff, Susana Marta Isay Saad, Jun Sun
International Journal of Molecular Sciences.2020; 22(1): 362. CrossRef - Effects of Probiotics on Patients with Hypertension: a Systematic Review and Meta-analysis
Cheng Chi, Cheng Li, Dongjun Wu, Nicholas Buys, Wenjun Wang, Huimin Fan, Jing Sun
Current Hypertension Reports.2020;[Epub] CrossRef - Data on global analysis of clinical trials with probiotics
Theresia M.G. Dronkers, Arthur C. Ouwehand, Ger T. Rijkers
Data in Brief.2020; 32: 106269. CrossRef - Lactobacillus acidophilus LB: a useful pharmabiotic for the treatment of digestive disorders
José María Remes-Troche, Enrique Coss-Adame, Miguel Ángel Valdovinos-Díaz, Octavio Gómez-Escudero, María Eugenia Icaza-Chávez, José Antonio Chávez-Barrera, Flora Zárate-Mondragón, José Antonio Velarde-Ruíz Velasco, Guillermo Rafael Aceves-Tavares, Marco A
Therapeutic Advances in Gastroenterology.2020;[Epub] CrossRef - Postbiotics against Pathogens Commonly Involved in Pediatric Infectious Diseases
Anastasia Mantziari, Seppo Salminen, Hania Szajewska, Jeadran Nevardo Malagón-Rojas
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BMC Microbiology.2020;[Epub] CrossRef - Beneficial Regulatory Effects of Polymethoxyflavone—Rich Fraction from Ougan (Citrus reticulata cv. Suavissima) Fruit on Gut Microbiota and Identification of Its Intestinal Metabolites in Mice
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Nutrients.2020; 12(7): 2082. CrossRef - Engineering probiotics as living diagnostics and therapeutics for improving human health
Zhao Zhou, Xin Chen, Huakang Sheng, Xiaolin Shen, Xinxiao Sun, Yajun Yan, Jia Wang, Qipeng Yuan
Microbial Cell Factories.2020;[Epub] CrossRef - Lactobacillus Cell Surface Proteins Involved in Interaction with Mucus and Extracellular Matrix Components
Lidia Muscariello, Barbara De Siena, Rosangela Marasco
Current Microbiology.2020; 77(12): 3831. CrossRef - Directed mutation of β-glucanases from probiotics to enhance enzymatic activity, thermal and pH stability
Zhan-Bin Sun, Jia-Liang Xu, Xin Lu, Wei Zhang, Chao Ji, Qing Ren
Archives of Microbiology.2020; 202(7): 1749. CrossRef - Role of Gut Microbiota in Neuroendocrine Regulation of Carbohydrate and Lipid Metabolism via the Microbiota-Gut-Brain-Liver Axis
Shu-Zhi Wang, Yi-Jing Yu, Khosrow Adeli
Microorganisms.2020; 8(4): 527. CrossRef - Lactic Acid Bacteria Isolated From Korean Kimchi Activate the Vitamin D Receptor–autophagy Signaling Pathways
Rong Lu, Mei Shang, Yong-Guo Zhang, Yang Jiao, Yinglin Xia, Shari Garrett, Danika Bakke, Christine Bäuerl, Gaspar Perez Martinez, Cheol-Hyun Kim, Sang-Moo Kang, Jun Sun
Inflammatory Bowel Diseases.2020; 26(8): 1199. CrossRef - Influence of freezing temperature before freeze-drying on the viability of various Lactobacillus plantarum strains
Guang-Qiang Wang, Jing Pu, Xiao-Qing Yu, Yong-Jun Xia, Lian-Zhong Ai
Journal of Dairy Science.2020; 103(4): 3066. CrossRef - The Influence of Polyphenol Compounds on Human Gastrointestinal Tract Microbiota
Michał Wiciński, Jakub Gębalski, Ewelina Mazurek, Marta Podhorecka, Maciej Śniegocki, Paweł Szychta, Ewelina Sawicka, Bartosz Malinowski
Nutrients.2020; 12(2): 350. CrossRef - Protective effects of exopolysaccharide of a medicinal fungus on probiotic bacteria during cold storage and simulated gastrointestinal conditions
Ang-Xin Song, Yu-Heng Mao, Ka-Chai Siu, William Chi Shing Tai, Jian-Yong Wu
International Journal of Biological Macromolecules.2019; 133: 957. CrossRef - Anti-TGEV Miller Strain Infection Effect of Lactobacillus plantarum Supernatant Based on the JAK-STAT1 Signaling Pathway
Kai Wang, Ling Ran, Tao Yan, Zheng Niu, Zifei Kan, Yiling Zhang, Yang Yang, Luyi Xie, Shilei Huang, Qiuhan Yu, Di Wu, Zhenhui Song
Frontiers in Microbiology.2019;[Epub] CrossRef - Research progress of gut flora in improving human wellness
Chenggang Zhang, Wenjing Gong, Zhihui Li, Dawen Gao, Yan Gao
Food Science and Human Wellness.2019; 8(2): 102. CrossRef - In Vitro Methods to Study Colon Release: State of the Art and An Outlook on New Strategies for Better In-Vitro Biorelevant Release Media
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Pharmaceutics.2019; 11(2): 95. CrossRef -
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Jeon-Kyung Kim, Jae-Young Kim, Hye In Kim, Myung Joo Han, Dong-Hyun Kim
Food and Agricultural Immunology.2019; 30(1): 581. CrossRef - Probiotics: If It Does Not Help It Does Not Do Any Harm. Really?
Aaron Lerner, Yehuda Shoenfeld, Torsten Matthias
Microorganisms.2019; 7(4): 104. CrossRef
- Progress of analytical tools and techniques for human gut microbiome research
-
Eun-Ji Song , Eun-Sook Lee , Young-Do Nam
-
J. Microbiol. 2018;56(10):693-705. Published online September 28, 2018
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DOI: https://doi.org/10.1007/s12275-018-8238-5
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Abstract
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Massive DNA sequencing studies have expanded our insights
and understanding of the ecological and functional
characteristics of the gut microbiome. Advanced sequencing
technologies allow us to understand the close association of
the gut microbiome with human health and critical illnesses.
In the future, analyses of the gut microbiome will provide
key information associating with human individual health,
which will help provide personalized health care for diseases.
Numerous molecular biological analysis tools have been rapidly
developed and employed for the gut microbiome researches;
however, methodological differences among researchers
lead to inconsistent data, limiting extensive share of
data. It is therefore very essential to standardize the current
method
ologies and establish appropriate pipelines for human
gut microbiome research. Herein, we review the methods
and procedures currently available for studying the human
gut microbiome, including fecal sample collection, metagenomic
DNA extraction, massive DNA sequencing, and data
analyses with bioinformatics. We believe that this review will
contribute to the progress of gut microbiome research in
the clinical and practical aspects of human health.
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Citations to this article as recorded by - Effect of Yoga and Meditation on Human Gut Microbiota: A Systematic Review
Renukaradhya K. Math, Palaksha Kanive Javaregowda, Satish G. Patil
International Journal of Yoga.2026; 19(1): 41. CrossRef - The gut microbiome as a biomarker and modifiable risk factor in Lynch Syndrome
Verona Sarena Colaco, Annemarie Boleij
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Junior Carlone, Ághata Cardoso da Silva Ribeiro, Attilio Parisi, Saverio Giampaoli, Alessio Fasano
Biology.2026; 15(8): 600. CrossRef - Next-Generation Sequencing and Its Application in Dairy Microbiome Research
S. Zhadyra, A. E. Muratbekova, G. T. Kassenova
Biosafety and Biotechnology.2026; (25): 4. CrossRef - Biotics: The Food Ingredients Supporting the Intestinal Microbiota and Immune System in Psoriasis
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Nutrition Reviews.2026;[Epub] CrossRef - Efficacy of a Postbiotic Formulation Combined With Microneedling for Mild‐to‐Moderate Acne: A Self‐Control Study
Zhanhong Li, Peihui Li, Yu Xu, Changqing Yan, Xiufen Ma, Huiying Wang, Hong Cheng, Jing Zeng, Ting Li, Xinxian Li, Jia Zhou, Jie Zhang, Jianfeng Zhou, Rongya Yang, Yan Wu, Li Li, Wei Lai, Jiangyun Zhao, Zhe Liu, Qiong Meng
Journal of Cosmetic Dermatology.2025;[Epub] CrossRef - Comparative analysis of three experimental methods for revealing human fecal microbial diversity
Caiqing Yao, Yu Zhang, Lijun You, Jingjing E, Junguo Wang
BMC Microbiology.2025;[Epub] CrossRef - Exercise-induced modulation of gut microbiota in individuals with obesity and type 2 diabetes: a systematic review and meta-analysis
Weian Lin, Lei Pu, Xingyu Qian, Jinchen Pan, Ruiqi Cheng, Peng Sun
Frontiers in Microbiology.2025;[Epub] CrossRef - Changes in the Gastrointestinal Microbiota Induced by Proton Pump Inhibitors—A Review of Findings from Experimental Trials
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Microorganisms.2024; 12(6): 1110. CrossRef - Deciphering the gut microbiome: The revolution of artificial intelligence in microbiota analysis and intervention
Mohammad Abavisani, Alireza Khoshrou, Sobhan Karbas Foroushan, Negar Ebadpour, Amirhossein Sahebkar
Current Research in Biotechnology.2024; 7: 100211. CrossRef - From the Gut to the Brain: Is Microbiota a New Paradigm in Parkinson’s Disease Treatment?
Cristiana Vilela, Bruna Araújo, Carla Soares-Guedes, Rita Caridade-Silva, Joana Martins-Macedo, Catarina Teixeira, Eduardo D. Gomes, Cristina Prudêncio, Mónica Vieira, Fábio G. Teixeira
Cells.2024; 13(9): 770. CrossRef - Gut Microbiome in Alzheimer’s Disease: from Mice to Humans
Chang Liang, Resel Pereira, Yan Zhang, Olga L. Rojas
Current Neuropharmacology.2024; 22(14): 2314. CrossRef - Comparative Analysis of Healthy Gut Microbiota in German and Korean Populations: Insights from Large-Scale Cohort Studies
Min Kee Son, Yuri Song, Jin Chung, Hee Sam Na
Microbiology Research.2023; 15(1): 109. CrossRef - Changes in the microbiota of the upper airways and intestine in the treatment of acute respiratory infections in preschool children
Tatiana I. Kurdyukova, Olga N. Krasnorutskaya, Daniil Yu. Bugrimov, Artem N. Shevtsov
Russian Pediatric Journal.2023; 23(2): 95. CrossRef - Factors Affecting Gut Microbiota of Puppies from Birth to Weaning
Fatemeh Balouei, Bruno Stefanon, Sandy Sgorlon, Misa Sandri
Animals.2023; 13(4): 578. CrossRef - Culturing the Human Oral Microbiota, Updating Methodologies and Cultivation Techniques
Saber Khelaifia, Pilliol Virginie, Souad Belkacemi, Herve Tassery, Elodie Terrer, Gérard Aboudharam
Microorganisms.2023; 11(4): 836. CrossRef - Influence of Microbiota on Vaccine Effectiveness: “Is the Microbiota the Key to Vaccine-induced Responses?”
So-Hee Hong
Journal of Microbiology.2023; 61(5): 483. CrossRef - gutMDisorder v2.0: a comprehensive database for dysbiosis of gut microbiota in phenotypes and interventions
Changlu Qi, Yiting Cai, Kai Qian, Xuefeng Li, Jialiang Ren, Ping Wang, Tongze Fu, Tianyi Zhao, Liang Cheng, Lei Shi, Xue Zhang
Nucleic Acids Research.2023; 51(D1): D717. CrossRef - The impact of environmental toxins on the animal gut microbiome and their potential to contribute to disease
Dinesh Nalage, Tejswini Sontakke, Ashwini Biradar, Vinod Jogdand, Ravindra Kale, Sanjay Harke, Rahul Kale, Prashant Dixit
Food Chemistry Advances.2023; 3: 100497. CrossRef - Fecal and cloacal microbiomes of cold-stunned loggerhead Caretta caretta, Kemp’s ridley Lepidochelys kempii, and green sea turtles Chelonia mydas
ZR Forbes, AK Scro, SH Patel, KM Dourdeville, RL Prescott, RM Smolowitz
Endangered Species Research.2023; 50: 93. CrossRef - A Two-Step Single Plex PCR Method for Evaluating Key Colonic Microbiota Markers in Young Mexicans with Autism Spectrum Disorders: Protocol and Pilot Epidemiological Application
Julián Herrera-Mejía, Rocío Campos-Vega, Abraham Wall-Medrano, Florinda Jiménez-Vega
Diagnostics.2023; 13(14): 2387. CrossRef - Effect of Concurrent Training on Body Composition and Gut Microbiota in Postmenopausal Women with Overweight or Obesity
MARINE DUPUIT, MÉLANIE RANCE, CLAIRE MOREL, PATRICE BOUILLON, AUDREY BOSCARO, VINCENT MARTIN, EMILIE VAZEILLE, NICOLAS BARNICH, BENOIT CHASSAING, NATHALIE BOISSEAU
Medicine & Science in Sports & Exercise.2022; 54(3): 517. CrossRef - Using integrated meta-omics to appreciate the role of the gut microbiota in epilepsy
Lucia Boeri, Francesca Donnaloja, Marzia Campanile, Lorenzo Sardelli, Marta Tunesi, Federica Fusco, Carmen Giordano, Diego Albani
Neurobiology of Disease.2022; 164: 105614. CrossRef - The gut microbiota as a biomarker in epilepsy
Emilio Russo
Neurobiology of Disease.2022; 163: 105598. CrossRef - Developing whole cell standards for the microbiome field
Chrysi Sergaki, Saba Anwar, Martin Fritzsche, Ryan Mate, Robert J. Francis, Kirsty MacLellan-Gibson, Alastair Logan, Gregory C. A. Amos
Microbiome.2022;[Epub] CrossRef - Changes in Vaginal Microbiome Diversity in Women With Polycystic Ovary Syndrome
Chaoyi Lu, Hui Wang, Jihong Yang, Xinyue Zhang, Yao Chen, Ruizhi Feng, Yun Qian
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef - High-throughput 16S rDNA sequencing assisting in the detection of bacterial pathogen candidates: a fatal case of necrotizing fasciitis in a child
Dong Qu, Dong-Fang Qiao, Michael Klintschar, Zhi Qu, Xia Yue
International Journal of Legal Medicine.2021; 135(2): 399. CrossRef - Standardization of microbiome studies for urolithiasis: an international consensus agreement
Naveen Kachroo, Dirk Lange, Kristina L. Penniston, Joshua Stern, Gregory Tasian, Petar Bajic, Alan J. Wolfe, Mangesh Suryavanshi, Andrea Ticinesi, Tiziana Meschi, Manoj Monga, Aaron W. Miller
Nature Reviews Urology.2021; 18(5): 303. CrossRef - The Mammalian Metaorganism: A Holistic View on How Microbes of All Kingdoms and Niches Shape Local and Systemic Immunity
Solveig Runge, Stephan Patrick Rosshart
Frontiers in Immunology.2021;[Epub] CrossRef - Diet and the Microbiota–Gut–Brain Axis: Sowing the Seeds of Good Mental Health
Kirsten Berding, Klara Vlckova, Wolfgang Marx, Harriet Schellekens, Catherine Stanton, Gerard Clarke, Felice Jacka, Timothy G Dinan, John F Cryan
Advances in Nutrition.2021; 12(4): 1239. CrossRef - Interrogation of the perturbed gut microbiota in gouty arthritis patients through in silico metabolic modeling
Michael A. Henson
Engineering in Life Sciences.2021; 21(7): 489. CrossRef - A comprehensive review for gut microbes: technologies, interventions, metabolites and diseases
Changlu Qi, Ping Wang, Tongze Fu, Minke Lu, Yiting Cai, Xu Chen, Liang Cheng
Briefings in Functional Genomics.2021; 20(1): 42. CrossRef - Metagenomics Approaches to Investigate the Gut Microbiome of COVID-19 Patients
Sofia Sehli, Imane Allali, Rajaa Chahboune, Youssef Bakri, Najib Al Idrissi, Salsabil Hamdi, Chakib Nejjari, Saaïd Amzazi, Hassan Ghazal
Bioinformatics and Biology Insights.2021;[Epub] CrossRef - Potential role of the skin microbiota in Inflammatory skin diseases
Pan Chen, Guangwen He, Jingru Qian, Yi Zhan, Rong Xiao
Journal of Cosmetic Dermatology.2021; 20(2): 400. CrossRef - Current ocular microbiome investigations limit reproducibility and reliability: Critical review and opportunities
Erin M. Scott, Andrew C. Lewin, Marina L. Leis
Veterinary Ophthalmology.2021; 24(1): 4. CrossRef - Mining microbes for mental health: Determining the role of microbial metabolic pathways in human brain health and disease
Simon Spichak, Thomaz F.S. Bastiaanssen, Kirsten Berding, Klara Vlckova, Gerard Clarke, Timothy G. Dinan, John F. Cryan
Neuroscience & Biobehavioral Reviews.2021; 125: 698. CrossRef - Interactions between immune system and the microbiome of skin, blood and gut in pathogenesis of rosacea
Marie Isolde Joura, Alexandra Brunner, Éva Nemes-Nikodém, Miklós Sárdy, Eszter Ostorházi
Acta Microbiologica et Immunologica Hungarica.2021; 68(1): 1. CrossRef - The gut microbiome in drug‐resistant epilepsy
Simela Chatzikonstantinou, Georgia Gioula, Vasilios K. Kimiskidis, Jack McKenna, Ioannis Mavroudis, Dimitrios Kazis
Epilepsia Open.2021; 6(1): 28. CrossRef - Estimating included animal species in mixed crude drugs derived from animals using massively parallel sequencing
Hiroaki Nakanishi, Katsumi Yoneyama, Masaaki Hara, Aya Takada, Kazuyuki Saito
Scientific Reports.2021;[Epub] CrossRef - Effects of Xylo-Oligosaccharide on the Gut Microbiota of Patients With Ulcerative Colitis in Clinical Remission
Zongwei Li, Zhengpeng Li, Liying Zhu, Ning Dai, Gang Sun, Lihua Peng, Xin Wang, Yunsheng Yang
Frontiers in Nutrition.2021;[Epub] CrossRef - Recent advances in modulating the microbiome
Eamonn M.M Quigley, Prianka Gajula
F1000Research.2020; 9: 46. CrossRef - Tools for Analysis of the Microbiome
Jessica Galloway-Peña, Blake Hanson
Digestive Diseases and Sciences.2020; 65(3): 674. CrossRef - The potential role of interventions impacting on gut-microbiota in epilepsy
Luigi F Iannone, Maria Gómez-Eguílaz, Rita Citaro, Emilio Russo
Expert Review of Clinical Pharmacology.2020; 13(4): 423. CrossRef - State of the Art in the Culture of the Human Microbiota: New Interests and Strategies
Maryam Tidjani Alou, Sabrina Naud, Saber Khelaifia, Marion Bonnet, Jean-Christophe Lagier, Didier Raoult
Clinical Microbiology Reviews.2020;[Epub] CrossRef - Database limitations for studying the human gut microbiome
Camila K Dias, Robert Starke, Victor S. Pylro, Daniel K. Morais
PeerJ Computer Science.2020; 6: e289. CrossRef - Machine learning methods for microbiome studies
Junghyun Namkung
Journal of Microbiology.2020; 58(3): 206. CrossRef - Gut Microbiome Reveals Specific Dysbiosis in Primary Osteoporosis
Zhiming Xu, Zheng Xie, Jianguang Sun, Shilei Huang, Yangyang Chen, Chengxiang Li, Xing Sun, Bicheng Xia, Lingyang Tian, Caijuan Guo, Feng Li, Guofu Pi
Frontiers in Cellular and Infection Microbiology.2020;[Epub] CrossRef - Evaluation of cutaneous, oral and intestinal microbiota in patients affected by pemphigus and bullous pemphigoid: A pilot study
Giovanni Luca Scaglione, Luca Fania, Elisa De Paolis, Maria De Bonis, Cinzia Mazzanti, Giovanni Di Zenzo, Stefania Lechiancole, Serena Messinese, Ettore Capoluongo
Experimental and Molecular Pathology.2020; 112: 104331. CrossRef - Microecology research: a new target for the prevention of asthma
Hong-Lei Shi, Yu-Hao Lan, Zheng-Chuan Hu, Zi-Ning Yan, Ze-Zhong Liu, Xiriaili Kadier, Li Ma, Jin-Yan Yu, Jing Liu
Chinese Medical Journal.2020; 133(22): 2712. CrossRef - Omics Biomarkers in Obesity: Novel Etiological Insights and Targets for Precision Prevention
Krasimira Aleksandrova, Caue Egea Rodrigues, Anna Floegel, Wolfgang Ahrens
Current Obesity Reports.2020; 9(3): 219. CrossRef - Microbiome and colorectal cancer: Roles in carcinogenesis and clinical potential
Ester Saus, Susana Iraola-Guzmán, Jesse R. Willis, Anna Brunet-Vega, Toni Gabaldón
Molecular Aspects of Medicine.2019; 69: 93. CrossRef - Dietary quality and the colonic mucosa–associated gut microbiome in humans
Yanhong Liu, Nadim J Ajami, Hashem B El-Serag, Clark Hair, David Y Graham, Donna L White, Liang Chen, Zhensheng Wang, Sarah Plew, Jennifer Kramer, Rhonda Cole, Ruben Hernaez, Jason Hou, Nisreen Husain, Maria E Jarbrink-Sehgal, Fasiha Kanwal, Gyanprakash K
The American Journal of Clinical Nutrition.2019; 110(3): 701. CrossRef
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