Journal of Microbiology

Doo-Sang Park

9 Articles

Intestinibaculum porci gen. nov., sp. nov., a new member of the family Erysipelotrichaceae isolated from the small intestine of a swine: Ji-Sun Kim , Hanna Choe , Yu-Ri Lee , Kyung Mo Kim , Doo-Sang Park; J. Microbiol. 2019;57(5):381-387. Published online February 22, 2019; DOI: https://doi.org/10.1007/s12275-019-8631-8

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A strictly anaerobic, Gram-stain-positive, catalase-negative, non-motile, rod-shaped bacterium, designated SG0102T, was isolated from the small intestine of a swine. Optimal growth occurred at 37°C and pH 7.0. Furthermore, growth was observed in the presence of up to 3% (w/v) NaCl but not at salinity levels higher than 4%. The comparative analysis of 16S rRNA gene sequences showed that strain SG0102T was most closely related to Kandleria vitulina DSM 20405T (93.3%), followed by Catenibacterium mitsuokai KCTC 5053T (91.1%), Sharpea azabuensis KCTC 15217T (91.0%), and Eggerthia catenaformis DSM 5348T (89.6%). The average nucleotide identity values between strain SG0102T and related species, K. vitulina DSM 20405T, C. mitsuokai KCTC 5053T, S. azabuensis KCTC 15217T, and E. catenaformis DSM 5348T, were 71.0, 69.3, 70.0, and 69.2%, respectively. The phylogenetic analysis based on 16S rRNA gene sequence revealed that strain SG0102T belonged to the family Erysipelotrichaceae in the class Erysipelotrichia. The DNA G+C content of the strain SG0102T was 39.5 mol%. The major cellular fatty acids (> 10%) of strain SG0102T were C16:0, C16:0 dimethyl acetal, and C18:2 ω9/12c. The cell wall peptidoglycan of strain SG0102T contained the meso-diaminopimelic acid. The strain SG0102T produced lactic acid as a major end product of fermentation. These distinct phenotypic and phylogenetic properties suggest that strain SG0102T represents a novel species in a novel genus of the family Erysipelotrichaceae, for which the name Intestinibaculum porci gen. nov. sp. nov. is proposed. The type strain is SG0102T (= KCTC 15725T = NBRC 113396T).

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Exploring the potential for competitive exclusion of commensal probiotic candidates against the insidious swine pathogen Brachyspira hyodysenteriae
Samuel Gómez-Martínez, Lucía Pérez-Pérez, Alejandro Ucero-Carrretón, Álvaro López-García, Cristina Galisteo, Ana Carvajal, Héctor Argüello
Animal Microbiome.2026;[Epub] CrossRef
Yeast Culture Alleviates High-Concentrate Diet-Induced Rumen Fermentation Disturbances and Modulates the Rumen Microbiota and Metabolome in Lambs
Mingqiang Niu, Feifei Yang, Jiangfeng Fan, Shuru Cheng
Microorganisms.2026; 14(9): 2091. CrossRef
Manipulation of rumen fermentation focusing on short chain fatty acids ratio and its associated rumen microorganisms
Shuhei TAKIZAWA
Nihon Chikusan Gakkaiho.2025; 96(3): 193. CrossRef
An Update on Novel Taxa and Revised Taxonomic Status of Bacteria Isolated from Domestic Animals Described in 2018 to 2021
Erik Munson, Sara D. Lawhon, Claire R. Burbick, Amanda Zapp, Maia Villaflor, Elizabeth Thelen, Romney M. Humphries
Journal of Clinical Microbiology.2023;[Epub] CrossRef
Rumen microbial composition associated with the non‐glucogenic to glucogenic short‐chain fatty acids ratio in Holstein cows
Shuhei Takizawa, Takumi Shinkai, Yosuke Kobayashi, Masahiro Masuda, Kenji Hashiba, Kota Uchisawa, Fuminori Terada
Animal Science Journal.2023;[Epub] CrossRef
The gut microbiome and resistome of conventionally vs. pasture-raised pigs
Devin B. Holman, Katherine E. Gzyl, Arun Kommadath
Microbial Genomics .2023;[Epub] CrossRef
Copranaerobaculum intestinale gen. nov., sp. nov., a novel anaerobic bacterium isolated from human faeces
Jun-Hui Feng, Yu-Xiao Chang, Liang-Hui Li, Meng-Meng Li, Zong-Yu Huang, Ni Han, Wen-Jun Li, Rui-Fu Yang, Ping-Hua Qu, Yu-Jing Bi
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Differences in the Composition of the Rumen Microbiota of Finishing Beef Cattle Divergently Ranked for Residual Methane Emissions
Paul E. Smith, Alan K. Kelly, David A. Kenny, Sinéad M. Waters
Frontiers in Microbiology.2022;[Epub] CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1443. CrossRef

Sunxiuqinia dokdonensis sp. nov., Isolated from Deep Sub-Seafloor Sediment: Dong-Ho Chang , Jae-Bong Lee , Geun-Hye Lee , Moon-Soo Rhee , Haewon Lee , Kyung Sook Bae , Doo-Sang Park , Byoung-Chan Kim; J. Microbiol. 2013;51(6):741-746. Published online December 19, 2013; DOI: https://doi.org/10.1007/s12275-013-3492-z

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A novel facultatively anaerobic strain DH1T was isolated from deep sub-seafloor sediment at a depth of 900 m below the seafloor off Seo-do (the west part of Dokdo Island) in the East Sea of the Republic of Korea. The new strain was characterized using polyphasic approaches. The isolate was Gram-stain-negative, motile by gliding, non-spore-forming rods, oxidase-negative, and catalase-positive; and formed colonies of orange-red color. The NaCl range for growth was 0.5–7.0% (w/v) and no growth was observed in the absence of NaCl. The isolate grew optimally at 30°C, with 2% (w/v) NaCl and at pH 7. The cell-wall hydrolysates contained ribose as a major sugar. The DNA G+C content was 40.8 mol%. The closest related strains are Sunxiuqinia faeciviva JAM-BA0302T and Sunxiuqinia elliptica DQHS-4T (97.9 and 96.3% sequence similarity, respectively). The level of DNADNA relatedness between strain DH1T and S. faeciviva JAMBA0302T was around 41% (but only 6% between DH1T and S. elliptica DQHS-4T). The major cellular fatty acids of the isolate were contained iso-C15:0 (25.9%), anteiso-C15:0 (16.7%), and summed feature 9 (comprising C16:0 3-OH and/or unknown fatty acid of dimethylacetal ECL 17.157; 13.2%). The predominant menaquinone was MK-7. On the basis of polyphasic evidence from this study, the isolate was considered to represent a novel species of the genus Sunxiuqinia, for which the name Sunxiuqinia dokdonensis sp. nov. is proposed; the type strain is DH1T (=KCTC 32503T =CGMCC 1.12676T =JCM 19380T).

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Validation List no. 229: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef
Gaoshiqia hydrogeniformans sp. nov., a novel hydrogen-producing bacterium isolated from a deep diatomaceous shale formation
Akio Ueno, Kiyoshi Sato, Shuji Tamamura, Takuma Murakami, Hidenori Inomata, Satoshi Tamazawa, Yuki Amano, Kazuya Miyakawa, Takeshi Naganuma, Toshifumi Igarashi
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef
Deltaproteobacterium Strain KaireiS1, a Mesophilic, Hydrogen-Oxidizing and Sulfate-Reducing Bacterium From an Inactive Deep-Sea Hydrothermal Chimney
Nicole Adam, Yuchen Han, Katja Laufer-Meiser, Rebecca Bährle, Ulrich Schwarz-Schampera, Axel Schippers, Mirjam Perner
Frontiers in Microbiology.2021;[Epub] CrossRef
Sunxiuqinia indica sp. nov., isolated from deep sea
Jianyang Li, Mingming Qi, Qiliang Lai, Guangyi Wang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4186. CrossRef
Description of Maribellus sediminis sp. nov., a marine nitrogen-fixing bacterium isolated from sediment of cordgrass and mangrove
Zhaobin Huang, Yuzhong Hu, Qiliang Lai, Yu Guo
Systematic and Applied Microbiology.2020; 43(4): 126099. CrossRef
Simulated reactive zone with emulsified vegetable oil for the long-term remediation of Cr(VI)-contaminated aquifer: dynamic evolution of geological parameters and groundwater microbial community
Jun Dong, Jinqiu Yu, Qiburi Bao
Environmental Science and Pollution Research.2018; 25(34): 34392. CrossRef
Whole-genome sequence of Sunxiuqinia dokdonensis DH1 T , isolated from deep sub-seafloor sediment in Dokdo Island
Sooyeon Lim, Dong-Ho Chang, Byoung-Chan Kim
Genomics Data.2016; 9: 95. CrossRef
The composition, localization and function of low-temperature-adapted microbial communities involved in methanogenic degradations of cellulose and chitin from Qinghai-Tibetan Plateau wetland soils
Y. Dai, Z. Yan, L. Jia, S. Zhang, L. Gao, X. Wei, Z. Mei, X. Liu
Journal of Applied Microbiology.2016; 121(1): 163. CrossRef
Roseimarinus sediminis gen. nov., sp. nov., a facultatively anaerobic bacterium isolated from coastal sediment
Wen-Jie Wu, Qian-Qian Liu, Guan-Jun Chen, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_7): 2260. CrossRef
Erysipelothrix larvae sp. nov., isolated from the larval gut of the rhinoceros beetle, Trypoxylus dichotomus (Coleoptera: Scarabaeidae)
Byung-Ho Bang, Moon-Soo Rhee, Dong-Ho Chang, Doo-Sang Park, Byoung-Chan Kim
Antonie van Leeuwenhoek.2015; 107(2): 443. CrossRef
Bacterial colonization of a fumigated alkaline saline soil
Juan M. Bello-López, Cristina A. Domínguez-Mendoza, Arit S. de León-Lorenzana, Laura Delgado-Balbuena, Yendi E. Navarro-Noya, Selene Gómez-Acata, Analine Rodríguez-Valentín, Victor M. Ruíz-Valdiviezo, Marco Luna-Guido, Nele Verhulst, Bram Govaerts, Luc De
Extremophiles.2014; 18(4): 733. CrossRef

Aestuariibaculum scopimerae sp. nov., Isolated from the Globular Ghost Crab, Scopimera globosa: Jae-Bong Lee , Byung-Chun Kim , Hyangmi Kim , Kyung Sook Bae , Jae-Hyeong Yang , Young-Yull Chun , Seong-Joon Park , Doo-Sang Park; J. Microbiol. 2013;51(6):736-740. Published online December 19, 2013; DOI: https://doi.org/10.1007/s12275-013-3499-5

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A Gram-staining-negative, non-motile, catalase- and oxidasepositive bacterium, designated strain I-15T, was isolated from a crab of the Yellow Sea, Korea. On the basis of a 16S rRNA gene sequence analysis, strain I-15T was shown to belong to Bacteroidetes, related to the genus Aestuariibaculum. Sequence similarity between strain I-15T and the only type strain of the genus Aestuariibaculum, Aestuariibaculum suncheonense SC17T, was 96.7%. Strain I-15T grew at 0.5–6.0% (w/v) NaCl, at 10–42°C and at pH 4.5–8.0. It could hydrolyze starch and Tweens 80. Menaquinone-6 was the only respiratory quinone, and summed features 3 (C16:1 ω7c/C16:1 ω6c) (16.4%), iso-C15:0 (15.6%), and iso-C15:1 G (12.6%) were the major cellular fatty acids. The major polar lipids were phosphatidylethanolamine, two unidentified aminolipids and two unidentified lipids. The DNA G+C content was 39.0 mol%. Polyphasic data allowed genotypic and phenotypic distinction of strain I-15T from the only validly published Aestuariibaculum species. Therefore, the organism is considered a novel species of the genus Aestuariibaculum, for which the name Aestuariibaculum scopimerae sp. nov. is proposed. The type strain is I-15T (=KCTC 32459T =JCM 19486T).

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Aestuariibaculum lutulentum sp. nov., a marine bacterium isolated from coastal sediment in Beihai
Jia-Wei Gao, Dong-Yan He, Wen-Wu Zhang, Yu-Ruo Wang, Yue Su, Jun-Jie Ying, Zhi-Cheng Wu, Wu Qu, Lin Xu, Cong Sun
Archives of Microbiology.2023;[Epub] CrossRef
Complete genome sequence of carotenoid-producing Aestuariibaculum lutulentum L182T isolated from the tidal sediment
Wen-Jia Liu, Jia-Wei Gao, Yu Zhang, Cong Sun, Lin Xu
Marine Genomics.2023; 72: 101074. CrossRef
Aestuariibaculum sediminum sp. nov., a marine bacterium isolated from a tidal flat in Zhoushan
Zhi-Cheng Wu, Xin-Yin Zhang, Cong Sun, Lin Xu, Ge-Yi Fu, Xue-Wei Xu
Archives of Microbiology.2021; 203(6): 2953. CrossRef
List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2019;[Epub] CrossRef

Phycicoccus ochangensis sp. nov., Isolated from Soil of a Potato Cultivation Field: Hyangmi Kim , Hyun-Woo Oh , Doo-Sang Park , Kang Hyun Lee , Sung Uk Kim , Hee-Moon Park , Kyung Sook Bae Bae; J. Microbiol. 2012;50(5):893-893.

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Abstract PDF: In the article by Kim et al. that appears in the Journal of Microbiology 2012; 50, 349-353. KCTC number on page 349 (abstract line 19) and page 353 (left paragraph line 32) should read as KCTC 19695 not KCTC 19694, and on page 353 (left paragraph line 33) should read as KCTC 19694 not KCTC 19695.

Phycicoccus ochangensis sp. nov., Isolated from Soil of a Potato Cultivation Field: Hyangmi Kim , Hyun-Woo Oh , Doo-Sang Park , Kang Hyun Lee , Sung Uk Kim , Hee-Moon Park , Kyung Sook Bae; J. Microbiol. 2012;50(2):349-353. Published online April 27, 2012; DOI: https://doi.org/10.1007/s12275-012-1206-6

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Two novel, Gram-positive, motile, coccal bacteria, strains L1b-b9T and B5a-b5, were isolated from a potato cultivation field in Ochang, Korea. These isolates grew at 10–45°C, pH 5.0–10.0, and in the presence of 8% (w/v) NaCl. The diagnostic diamino acid in the cell-wall peptidoglycan was mesodiaminopimelic acid. The major menaquinone was MK-8(H4) and the main cellular fatty acids were iso-C14:0, iso-C15:0, and anteiso-C15:0. Polar lipids in strain L1b-b9T consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, and an unknown glyco-amino lipid. The G+C content of genomic DNA was 73.6 mol%. A phylogenetic analysis based on 16S rRNA gene sequences showed that strains L1b-b9T and B5a-b5 shared 99.36% similarity and formed a robust clade with the type species of the genus Phycicoccus. Strain L1b-b9T is related most closely to Phycicoccus cremeus V2M29T (97.52% 16S rRNA gene sequence similarity). On the basis of phylogenetic characteristics, the name Phycicoccus ochangensis sp. nov. is proposed for strain LIb-b9T (=KCTC 19694T =JCM 17595T).

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Validation list no. 228: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2026;[Epub] CrossRef
Phycicoccus sonneraticus sp. nov., a Novel Endophytic Actinobacterium Isolated from the Bark of Sonneratia apetala
Huiling Tang, Xiaohui Chen, Mingsheng Chen, Xiaohong Li, Jianjing Jiang, Li Tuo, Feina Li
Current Microbiology.2023;[Epub] CrossRef
An Insight into the Endophytic Bacterial Community of Tomato after Spray Application of Propiconazole and Bacillus subtilis Strain NBRI-W9
Udit Yadav, Nasreen Bano, Sumit Bag, Suchi Srivastava, Poonam C. Singh, Jeffrey A. Gralnick
Microbiology Spectrum.2022;[Epub] CrossRef
Phycicoccus ginsengisoli sp. nov., isolated from cultivated ginseng soil
Jong-Pyo Kang, Yeon-Ju Kim, Ngoc-Lan Nguyen, Van-An Hoang, Mohamed El-Agamy Farh, Sung-Chul Joo, Lin-Hu Quan, Deok-Chun Yang
International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5320. CrossRef
Phycicoccus soli sp. nov., isolated from soil
Hina Singh, KyungHwa Won, Hien T. T. Ngo, Juan Du, MooChang Kook, Tae-Hoo Yi
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_8): 2351. CrossRef

Biosynthesis of Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Copolyesters with a High Molar Fraction of 3-Hydroxyvalerate by an Insect-Symbiotic Burkholderia sp. IS-01: Do Young Kim , Doo-Sang Park , Soon Bum Kwon , Moon Gyu Chung , Kyung Sook Bae , Ho-Yong Park , Young Ha Rhee; J. Microbiol. 2009;47(5):651-656. Published online October 24, 2009; DOI: https://doi.org/10.1007/s12275-009-0109-7

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Burkholderia sp. IS-01 capable of biosynthesizing poly(3-hydroxybutyrate-co-3-hydroxyvalerate) [poly(3HB- co-3HV)] copolyesters with a high molar fraction of 3HV was isolated from the gut of the adult longicorn beetle, Moechotypa diphysis. The strain IS-01 was relatively tolerant to high concentrations of levulinic acid and accumulated a poly(13.5 mol% 3HB-co-86.5 mol% 3HV) copolyester when cultivated on a mixture of gluconate (20 g/L) and levulinic acid (12.5 g/L). In this case, the content of the copolyester in the cells was approximately 60.0%. The compositions of the copolyesters were easily regulated by altering the molar ratio of gluconate and levulinic acid in the medium. The organism was found to possess a class I PHA synthase (PhaC) gene (1,881 bp) that encodes a protein with a deduced molecular mass of 68,538 Da that consists of 626 amino acids. The PhaC of this organism was most similar to that of B. cenocepacia PC184 (92% similarity).

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Versatile sugar and valerate metabolic pathways in Paraburkholderia xenovorans LB400 enable tailored poly(3-hydroxybutyrate-co-3-hydroxyvalerate) production
Mario I. Sepúlveda, Viviana Urtuvia, Natalia Álvarez-Santullano, Pamela Villegas, Jacqueline Vásquez-Navarrete, Valentina Saffirio, Alvaro Díaz-Barrera, Myriam González, Jose Gregório C. Gomez, Valentina Méndez, Michael Seeger
Applied Microbiology and Biotechnology.2025;[Epub] CrossRef
Production of polyhydroxyalkanoates containing monomers conferring amorphous and elastomeric properties from renewable resources: Current status and future perspectives
Hye Min Song, Jeong Chan Joo, Seo Hyun Lim, Hye Jin Lim, Siseon Lee, Si Jae Park
Bioresource Technology.2022; 366: 128114. CrossRef
A Critical Review on the Economically Feasible and Sustainable Poly(3-Hydroxybutyrate-co-3-hydroxyvalerate) Production from Alkyl Alcohols
Hau Seung Jeremy Wong, Kesaven Bhubalan, Al-Ashraf Abdullah Amirul
Polymers.2022; 14(4): 670. CrossRef
Sustainable synthesis and applications of polyhydroxyalkanoates (PHAs) from biomass
Aderemi T. Adeleye, Chuks Kenneth Odoh, Obieze Christian Enudi, Oluwakemi Oluwabunmi Banjoko, Osigbeminiyi Oludare Osiboye, Emmanuel Toluwalope Odediran, Hitler Louis
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Poly(3-hydroxybutyrate) and Human Microbiota (Review)
A. P. Bonartsev, V. V. Voinova, G. A. Bonartseva
Applied Biochemistry and Microbiology.2018; 54(6): 547. CrossRef
Exploring the Potential of 1-Pentanol and Oleic Acid for Optimizing the Production of Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) Copolymer by Cupriavidus sp. USMAA1020
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Influence of Feeding and Controlled Dissolved Oxygen Level on the Production of Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Copolymer by Cupriavidus sp. USMAA2-4 and Its Characterization
K. Shantini, A. R. M. Yahya, A. A. Amirul
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Inseon Park, Eun Hea Jho, Kyoungphile Nam
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Yong Liu, Shaobin Huang, Yongqing Zhang, Fuqian Xu
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Gas chromatography-mass spectrometry method for rapid identification and differentiation ofBurkholderia pseudomalleiandBurkholderia malleifrom each other,Burkholderia thailandensisand several members of theBurkholderia cepaciacomplex
D. Li, J.K. March, T.M. Bills, B.C. Holt, C.E. Wilson, W. Lowe, H.D. Tolley, M.L. Lee, R.A. Robison
Journal of Applied Microbiology.2013; 115(5): 1159. CrossRef
Biosynthesis and Thermal Properties of PHBV Produced from Levulinic Acid by Ralstonia eutropha
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K. Shantini, Kesaven Bhubalan, Ahmad Ramli Mohd Yahya, A.A. Amirul
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Glycerine and levulinic acid: Renewable co-substrates for the fermentative synthesis of short-chain poly(hydroxyalkanoate) biopolymers
Richard D. Ashby, Daniel K.Y. Solaiman, Gary D. Strahan, Chengjun Zhu, Ryan C. Tappel, Christopher T. Nomura
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Biosynthesis of Copolyesters Consisting of 3-Hydroxyvalerate and Medium-chain-length 3-hydroxyalkanoates by the Pseudomonas aeruginosa P-5 Strain
Sang-Hee Woo, Jae-Hee Kim, Yu-Yang Ni, Young-Ha Rhee
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Paenibacillus camelliae sp. nov., Isolated from Fermented Leaves of Camellia sinensis: Hyun-Woo Oh , Byung-Chun Kim , Kang Hyun Lee , Do Young Kim , Doo-Sang Park , Hee-Moon Park , Kyung Sook Bae; J. Microbiol. 2008;46(5):530-534. Published online October 31, 2008; DOI: https://doi.org/10.1007/s12275-008-0233-9

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A novel bacterium, strain b11s-2T was isolated from Pu’er tea. The isolate was Gram-positive, endosporeforming motile rod that grew at 15~42°C and pH 6.0~10.2. The DNA G+C content was 48.3 mol%, the predominant isoprenoid quinone was MK-7, and the predominant cellular fatty acid was anteiso-C15:0 (54.2%) followed by C16:0 (15.5%) and iso-C16:0 (8.2%). The polar lipid pattern of b11s-2T was characterized by the presence of diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol. Phylogenetic analysis based on 16S rRNA gene sequence showed that the strain was affiliated within the Paenibacillaceae. The strain was most closely related to Paenibacillus granivorans A30T, with a similarity of 97.1%. Based on the phylogenetic and phenotypic characteristics of strain b11s-2T, the isolate is thought to represent a novel taxon in the genus Paenibacillus. The name Paenibacillus camelliae sp. nov. is proposed for the fermented tea isolate; the type strain is b11s-2T (= KCTC 13220T= CECT 7361T).

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International Journal of Systematic and Evolutionary Microbiology .2016; 66(12): 5000. CrossRef
Paenibacillus puernese sp. nov., a β-glucosidase-producing bacterium isolated from Pu’er tea
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Paenibacillus alba nov., Isolated from Peat Soil
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Current Microbiology.2015; 70(6): 865. CrossRef
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Paenibacillus yunnanensis sp. nov., isolated from Pu'er tea
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International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_11): 3806. CrossRef
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Antonie van Leeuwenhoek.2015; 108(5): 1015. CrossRef
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International Journal of Systematic and Evolutionary Microbiology .2014; 64(Pt_11): 3891. CrossRef
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Paenibacillus oceanisediminis sp. nov. isolated from marine sediment
Jina Lee, Na-Ri Shin, Mi-Ja Jung, Seong Woon Roh, Min-Soo Kim, Jung-Sook Lee, Keun Chul Lee, Young-Ok Kim, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_2): 428. CrossRef
Paenibacillus xylaniclasticus sp. nov., a xylanolytic-cellulolytic bacterium isolated from sludge in an anaerobic digester
Chakrit Tachaapaikoon, Somboon Tanasupawat, Patthra Pason, Somphit Sornyotha, Rattiya Waeonukul, Khin Lay Kyu, Khanok Ratanakhanokchai
Journal of Microbiology.2012; 50(3): 394. CrossRef
List of new names and new combinations previously effectively, but not validly, published

International Journal of Systematic and Evolutionary Microbiology .2010; 60(11): 2509. CrossRef

Characterization of an Extracellular Lipase in Burkholderia sp. HY-10 Isolated from a Longicorn Beetle: Doo-Sang Park , Hyun-Woo Oh , Sun-Yeon Heo , Woo-Jin Jeong , Dong Ha Shin , Kyung Sook Bae , Ho-Young Park; J. Microbiol. 2007;45(5):409-417.; DOI: https://doi.org/2596 [pii]

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Abstract PDF: Burkholderia sp. HY-10 isolated from the digestive tracts of the longicorn beetle, Prionus insularis, produced an extracellular lipase with a molecular weight of 33.5 kDa estimated by SDS-PAGE. The lipase was purified from the culture supernatant to near electrophoretic homogenity by a one-step adsorption-desorption procedure using a polypropylene matrix followed by a concentration step. The purified lipase exhibited highest activities at pH 8.5 and 60°C. A broad range of lipase substrates, from C4 to C18 ρ-nitrophenyl esters, were hydrolyzed efficiently by the lipase. The most efficient substrate was ρ-nitrophenyl caproate (C6). A 2485 bp DNA fragment was isolated by PCR amplification and chromosomal walking which encoded two polypeptides of 364 and 346 amino acids, identified as a lipase and a lipase foldase, respectively. The N-terminal amino acid sequence of the purified lipase and nucleotide sequence analysis predicted that the precursor lipase was proteolytically modified through the secretion step and produced a catalytically active 33.5 kDa protein. The deduced amino acid sequence for the lipase shared extensive similarity with those of the lipase family I.2 of lipases from other bacteria. The deduced amino acid sequence contained two Cystein residues forming a disulfide bond in the molecule and three, well-conserved amino acid residues, Ser131, His330, and Asp308, which composed the catalytic triad of the enzyme.

A Culture-Based Study of the Bacterial Communities within the Guts of Nine Longicorn Beetle Species and their Exo-enzyme Producing Properties for Degrading Xylan and Pectin: Doo-Sang Park , Hyun-Woo Oh , Won-Jin Jeong , Hyangmi Kim , Ho-Yong Park , Kyung Sook Bae; J. Microbiol. 2007;45(5):394-401.; DOI: https://doi.org/2598 [pii]

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Abstract PDF: In this study, bacterial communities within the guts of several longicorn beetles were investigated by a culture-dependent method. A total of 142 bacterial strains were isolated from nine species of longicorn beetle, including adults and larvae. A comparison of their partial 16S rRNA gene sequences showed that most of the bacteria constituting the gut communities can typically be found in soil, plants and the intestines of animals, and approximately 10% were proposed as unreported. Phylogenetic analysis demonstrated that the bacterial species comprised 7 phyla, and approximately half were Gammaproteobacteria. Actinobacteria were the second most populous group (19%), followed by Firmicutes (13%) and Alphaproteobacteria (11%). Betaproteobacteria, Flavobacteria, and Acidobacteria were minor constituents. The taxonomic compositions of the isolates were variable according to the species of longicorn beetle. Particularly, an abundance of Actinobacteria existed in Moechotypa diphysis and Mesosa hirsute, which eat broadleaf trees; however, no Actinobacteria were isolated from Corymbia rubra and Monochamus alternatus, which are needle-leaf eaters. Considerable proportions of xylanase and pectinase producing bacteria in the guts of the longicorn beetles implied that the bacteria may play an important role in the digestion of woody diets. Actinobacteria and Gammaproteobacteria were the dominant xylanase producers in the guts of the beetles.

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