- UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis
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Jihyeon Kim , Seong-In Na , Dongwook Kim , Jongsik Chun
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J. Microbiol. 2021;59(6):609-615. Published online May 29, 2021
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DOI: https://doi.org/10.1007/s12275-021-1231-4
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Abstract
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Phylogenomic tree reconstruction has recently become a
routine and critical task to elucidate the evolutionary relationships
among bacterial species. The most widely used method
utilizes the concatenated core genes, universally present in a
single-copy throughout the bacterial domain. In our previous
study, a bioinformatics pipeline termed Up-to-date Bacterial
Core Genes (UBCG) was developed with a set of bacterial core
genes selected from 1,429 species covering 28 phyla. In this
study, we revised a new bacterial core gene set, named UBCG2,
that was selected from the more extensive genome sequence
set belonging to 3,508 species spanning 43 phyla. UBCG2 comprises
81 genes with nine Clusters of Orthologous Groups of
proteins (COGs) functional categories. The new gene set and
complete pipeline are available at http://leb.snu.ac.kr/ubcg2.
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International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Rubrivirga aquatilis sp. nov. and Rubrivirga halophila sp. nov., isolated from Korean coastal surface seawater
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International Journal of Systematic and Evolutionary Microbiology
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Yuka Machii, Karen Tsukiyama, Takafumi Kataoka, Ryuji Kondo
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Bulleidia extructa PP_925: Genome Reduction, Minimalist Metabolism, and Evolutionary Insights into Firmicutes Diversification
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Cheng-Jie Xie, Ling Yao, Rong Tang, Shuang Han, Shang Yang, Hend Alwathnani, Christopher Rensing, Guo-Hong Liu, Shun-Gui Zhou Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Veillonella faecalis sp. nov., a propionic acid-producing bacterium isolated from the faeces of an infant
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International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Augmenting bacterial similarity measures using a graph-based genome representation
Vivek Ramanan, Indra Neil Sarkar, Sergio Baranzini mSystems.2024;[Epub] CrossRef - Flavobacterium rivulicola sp. nov., Isolated from a Freshwater Stream
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James T. Tambong, Renlin Xu, Maria Constanza Fleitas, Randy Kutcher
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Parendozoicomonas callyspongiae sp. nov. Isolated from a Marine Sponge, Callyspongia elongate, and Reclassification of Sansalvadorimonas verongulae as Parendozoicomonas verongulae comb. nov.
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Pattaraporn Yukphan, Piyanat Charoenyingcharoen, Supattra Muangham, Wuttichai Mhuantong, Yuzo Yamada
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Lapidilactobacillus salsurivasis sp. nov., Secundilactobacillus muriivasis sp. nov., and Streptococcus parasalivarius sp. nov., isolated from Traditional Chinese Pickle
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Raúl Riesco, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Rhizobium aouanii sp. nov., efficient nodulating rhizobia isolated from Acacia saligna roots in Tunisia
Jihed Hsouna, Takwa Gritli, Houda Ilahi, Jia-Cheng Han, Walid Ellouze, Xiao Xia Zhang, Maroua Mansouri, Praveen Rahi, Mustapha Missbah El Idrissi, Mouad Lamrabet, Pierre Emmanuel Courty, Daniel Wipf, Abdelkader Bekki, James T. Tambong, Bacem Mnasri
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Paralimibaculum aggregatum gen. nov. sp. nov. and Biformimicrobium ophioploci gen. nov. sp. nov., two novel heterotrophs from brittle star Ophioplocus japonicus
Keisuke Kawano, Tatsuya Awano, Arata Yoshinaga, Junji Sugiyama, Shigeki Sawayama, Satoshi Nakagawa
International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
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.2024;[Epub] CrossRef - Saccharopolyspora mangrovi sp. nov., a novel mangrove soil actinobacterium with distinct metabolic potential revealed by comparative genomic analysis
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Ting-Yu Wang, Hao Wang, Chun Tao Gu
International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Chengkuizengella axinellae sp. nov., a symbiotic bacterium isolated from a marine sponge of the genus Axinella
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Complete genome sequence of the emerging pathogen
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Francisella
: Insights into its genetic diversity and potential virulence traits
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International Journal of Systematic and Evolutionary Microbiology
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Miryung Kim, Yong-Seok Kim, Chang-Jun Cha Journal of Microbiology.2023; 61(1): 37. CrossRef -
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Hui Zhao, Yue Su, Qihui Gu, Jumei Zhang, Xinqiang Xie, Qingping Wu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Geothrix oryzisoli sp. nov., a ferric iron-reducing bacterium isolated from paddy soil
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International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
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International Journal of Systematic and Evolutionary Microbiology
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Dyadobacter pollutisoli sp. nov., isolated from plastic waste landfill soil
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International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi
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Chartchai Changsen, Somsak Likhitrattanapisal, Kamonwan Lunha, Wiyada Chumpol, Surasak Jiemsup, Anuphap Prachumwat, Darin Kongkasuriyachai, Supawadee Ingsriswang, Soraya Chaturongakul, Aekarin Lamalee, Suganya Yongkiettrakul, Sureemas Buates PeerJ.2023; 11: e15283. CrossRef - Streptomonospora mangrovi sp. nov., isolated from mangrove soil showing similar metabolic capabilities, but distinct secondary metabolites profiles
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International Journal of Systematic and Evolutionary Microbiology
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Seong-In Na, Michael James Bailey, Mauricio Chalita, Jae Hyoung Cho, Jongsik Chun Journal of Microbiology.2023; 61(7): 683. CrossRef -
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Kyung Hyun Kim, Jeong Min Kim, Hyun Mi Jin, Lujiang Hao, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Cutibacterium equinum sp. nov., isolated from horse faeces
Jeong Ui Yun, Hye Su Jung, Mi-Ja Jung, Hye Seon Song, Yeon Bee Kim, Yujin Kim, Joon-Gyu Kim, Seong Woon Roh, Se Hee Lee, Jun Sik Lee, Tae Woong Whon
International Journal of Systematic and Evolutionary Microbiology
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Martina Jerabkova, Tereza Smrhova, Eglantina Lopez-Echartea, Jiri Dresler, Jachym Suman, Gabriela Kapinusova, Tomas Cajthaml, Zdena Skrob, Robin Kyclt, Jonas Fagerman, Michal Strejcek, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Actinophytocola gossypii sp. nov. and Streptomyces gossypii sp. nov., two novel actinomycetes isolated from rhizosphere soil of cotton
Xianfeng Ge, Shenrong Yang, Cheng Zhen, Wenzheng Liu
International Journal of Systematic and Evolutionary Microbiology
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Sergio Álvarez-Pérez, Clara de Vega, Kristof Vanoirbeek, Kaoru Tsuji, Hans Jacquemyn, Tadashi Fukami, Chris Michiels, Bart Lievens
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Thermomonas mangrovi sp. nov., isolated from soil of a mangrove nature reserve
Shanshan Xu, Junpeng Chen, Si Chen, Qiliang Lai, Zengzhi Liu, Ying Xu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Tahibacter soli sp. nov., isolated from soil and Tahibacter amnicola sp. nov., isolated from freshwater
Ju Hye Baek, Dong Min Han, Jeong Min Kim, Baolei Jia, Ji Young Jung, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Phylogenomic reappraisal of the family Rhizobiaceae at the genus and species levels, including the description of Ectorhizobium quercum gen. nov., sp. nov.
Tengfei Ma, Han Xue, Chungen Piao, Ning Jiang, Yong Li Frontiers in Microbiology.2023;[Epub] CrossRef -
Antarcticirhabdus aurantiaca gen. nov., sp. nov., isolated from Antarctic gravel soil
Jie Du, Ying Zhang, Di Xin, Yuhua Xin, Jianli Zhang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Caldimonas mangrovi sp. nov., Isolated from Mangrove Soil
S. R. Yang, Y. Y. Liu, X. F. Ge, W. Z. Liu Microbiology.2023; 92(4): 500. CrossRef - Chitinophaga horti sp. nov., Isolated from Garden Soil
Dong Min Han, Ju Hye Baek, Dae Gyu Choi, Myeong Seo Jin, Che Ok Jeon Current Microbiology.2023;[Epub] CrossRef - Streptomyces pacificus sp. nov., a novel spongiicolazolicin-producing actinomycete isolated from a coastal sediment
Miku Takahashi, Shoya Shinohara, Moriyuki Hamada, Tomohiko Tamura, Hideo Dohra, Shinya Kodani, Youji Nakagawa, Susumu Kokubo, Masayuki Hayakawa, Hideki Yamamura The Journal of Antibiotics.2023; 76(2): 93. CrossRef - MALDI-TOF MS analysis of Burkholderia pseudomallei and closely related species isolated from soils and water in Khon Kaen, Thailand
Nut Nithimongkolchai, Yothin Hinwan, Benjawan Kaewseekhao, Pisit Chareonsudjai, Pipat Reungsang, Ratthaphol Kraiklang, Sorujsiri Chareonsudjai, Lumyai Wonglakorn, Ploenchan Chetchotisakd, Auttawit Sirichoat, Arnone Nithichanon, Kiatichai Faksri Infection, Genetics and Evolution.2023; 116: 105532. CrossRef - Flavobacterium psychrotrophum sp. nov. and Flavobacterium panacagri sp. nov., Isolated from Freshwater and Soil
Yong-Seok Kim, Eun-Mi Hwang, Chang-Myeong Jeong, Chang-Jun Cha Journal of Microbiology.2023; 61(10): 891. CrossRef - VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution
Renmao Tian, Behzad Imanian Microbiome.2023;[Epub] CrossRef - tilS and rpoB: New Molecular Markers for Phylogenetic and Biodiversity Studies of the Genus Thiothrix
Nikolai V. Ravin, Dmitry D. Smolyakov, Nikita D. Markov, Alexey V. Beletsky, Andrey V. Mardanov, Tatyana S. Rudenko, Margarita Yu. Grabovich Microorganisms.2023; 11(10): 2521. CrossRef -
Thermomonas paludicola sp. nov., isolated from a lotus wetland
Mirae Kim, Miri S. Park, Ilnam Kang, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Octadecabacter algicola sp. nov. and Octadecabacter dasysiphoniae sp. nov., isolated from a marine red alga and emended description of the genus Octadecabacter
Myeong Seo Jin, Kyung Hyun Kim, Ju Hye Baek, Jeong Min Kim, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Flavihumibacter fluminis sp. nov. and Flavihumibacter rivuli sp. nov., isolated from a freshwater stream
Miri S. Park, Hyeonuk Sa, Ilnam Kang, Jang-Cheon Cho Journal of Microbiology.2022; 60(8): 806. CrossRef - Exploring the genome of Lactobacillaceae spp. Sy-1 isolated from Heterotrigona itama honey
Syariffah Nuratiqah Syed Yaacob, Fahrul Huyop, Mailin Misson, Roswanira Abdul Wahab, Nurul Huda PeerJ.2022; 10: e13053. CrossRef - Micrococcus porci sp. nov., Isolated from Feces of Black Pig (Sus scrofa)
Ai-Yun Lee, Chia-Hsuan Chen, Jong-Shian Liou, Yu-Chun Lin, Moriyuki Hamada, Yu-Ting Wang, Lin-Liang Peng, Shen-Chang Chang, Chih-Chieh Chen, Chuen-Fu Lin, Lina Huang, Chien-Hsun Huang Life.2022; 12(11): 1749. CrossRef - Pseudonocardia humida sp. nov., an Actinomycete Isolated from Mangrove Soil Showing Distinct Distribution Pattern of Biosynthetic Gene Clusters
Zhen-Yu Zan, Xian-Feng Ge, Rui-Rui Huang, Wen-Zheng Liu Current Microbiology.2022;[Epub] CrossRef -
Occultella gossypii sp. nov., an alkali-resistant isolate from soil sampled in a cotton field
Xianfeng Ge, Ruirui Huang, Wenzheng Liu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Rhodococcus oxybenzonivorans sp. nov., a benzophenone-3-degrading bacterium, isolated from stream sediment
Ju Hye Baek, Woonhee Baek, Sang Eun Jeong, Sung Chul Lee, Hyun Mi Jin, Che Ok Jeon International Journal of Systematic and Evolutionary Microbiology.2022;[Epub] CrossRef - Pedobacter aquae sp. nov., a multi-drug resistant bacterium isolated from fresh water
Le Tran Tien Chau, Yong-Seok Kim, Chang-Jun Cha Antonie van Leeuwenhoek.2022; 115(3): 445. CrossRef - Amsterdam urban canals contain novel niches for methane‐cycling microorganisms
Koen A. J. Pelsma, Michiel H. in 't Zandt, Huub J. M. Op den Camp, Mike S. M. Jetten, Joshua F. Dean, Cornelia U. Welte Environmental Microbiology.2022; 24(1): 82. CrossRef -
Roseovarius carneus sp. nov., a novel bacterium isolated from a coastal phytoplankton bloom in Xiamen
Xueqiong Sun, Dan Lin, Yu Han, Jia Sun, Jianing Ye, Beihan Chen, Kai Tang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Tenacibaculum aquimarinum sp. nov., isolated from a marine alga and seawater
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- Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
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Dongwook Kim , Sein Park , Jongsik Chun
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J. Microbiol. 2021;59(5):476-480. Published online April 28, 2021
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DOI: https://doi.org/10.1007/s12275-021-1154-0
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Abstract
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The average amino acid identity (AAI) is an index of pairwise
genomic relatedness, and multiple studies have proposed its
application in prokaryotic taxonomy and related disciplines.
AAI demonstrates better resolution in elucidating taxonomic
structure beyond the species rank when compared with average
nucleotide identity (ANI), which is a standard criterion
in species delineation. However, an efficient and easy-to-use
computational tool for AAI calculation in large-scale taxonomic
studies is not yet available. Here, we introduce a bioinformatic
pipeline, named EzAAI, which allows for rapid
and accurate AAI calculation in prokaryote sequences. The
EzAAI tool is based on the MMSeqs2 program and computes
AAI values almost identical to those generated by the standard
BLAST algorithm with significant improvements in the
speed of these evaluations. Our pipeline also provides a function
for hierarchical clustering to create dendrograms, which
is an essential part of any taxonomic study. EzAAI is available
for download as a standalone JAVA program at http://
leb.snu.ac.kr/ezaai.
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Ming Wu, Fushuang Duan, Shuang Chen, Yuhang Nie, Zhanpeng Wang, Ying Yang, Xuepeng Cai, Jie Li, Zhongmei Ma, Qingling Meng, Jun Qiao World Journal of Microbiology and Biotechnology.2026;[Epub] CrossRef - Novel Methanosarcinaceae species Methanohalophilus methylutens sp. nov., Methanolobus methylotrophicus sp. nov., and Methanococcoides guerreronegronense sp. nov. from Guerrero Negro hypersaline microbial mats in accordance with the SeqCode
Patricia J. Ramírez-Arenas, Alejandro López-Cortés, Miguel A. Martínez-Mercado Systematic and Applied Microbiology.2026; 49(3): 126716. CrossRef - Hot life in Antarctica: a novel metabolically versatile Pyrodictiaceae genus thriving at a volcanic–cryosphere–marine interface
Ana Carolina de Araújo Butarelli, Francielli Vilela Peres, Vivian Helena Pellizari, Amanda Gonçalves Bendia ISME Communications.2026;[Epub] CrossRef - Paramicrobacterium salitolerans sp. nov. isolated from the agricultural soil and Microbacterium fluminis sp. nov. isolated from the Han River, South Korea
Gracia Pradnya Lolita, Do-Hoon Lee, Yong-Seok Kim, Chang-Jun Cha Journal of Microbiology.2026; 64(4): e2512014. CrossRef - A comprehensive genome-centred taxonomy for agrobacteria and rhizobia in the Bartonellaceae and Rhizobiaceae families
Melandré van Lill, Stephanus N. Venter, Marike Palmer, Chrizelle W. Beukes, Emma T. Steenkamp
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey
Aurora Xolalpa-Aroche, Haydeé Contreras-Peruyero, Enrique J Delgado-Suárez, David I Hernández-Mena, Wilson I Moguel-Chin, Jose F Rivero-Cruz, Rodrigo A Velarde, Elizabeth Ortiz-Vázquez, Blanca E Rivero-Cruz, Jose Abel Lovaco-Flores, Lorena Rodríguez Orduñ ISME Communications.2026;[Epub] CrossRef - Cupriavidus smyrnaeus sp. nov., Isolated from Soil Litter Near an Arum sp.
Nurettin Sahin, Akio Tani Current Microbiology.2026;[Epub] CrossRef - Three novel bacterial species isolated from plasma-treated soil: Hymenobacter plasmatis sp. nov., Flavitalea plasmicola sp. nov. and Mucilaginibacter tolerans sp. nov.
Seona Park, M. K. Kim, S. Srinivasan Antonie van Leeuwenhoek.2026;[Epub] CrossRef - A Novel Freshwater Anammox Species of Candidatus Loosdrechtia Thriving Under Dual Salinity and Sulfate Stresses
Wei Li, Zhiyao Wang, Han Fu, Yan-Rong Ma, Yong Gu, Jin-Long Zhuang, Yu-Xiang Zhao, Yong-Di Liu, Qiang Yang, James P. Shapleigh, Ren-Cun Jin, Jianhua Guo, Boran Kartal, Bruce E. Rittmann Environmental Science & Technology.2026; 60(23): 16629. CrossRef - Microbial community synergy drives metal-dependent anaerobic methane oxidation under simulated deep-sea high-pressure conditions
Cun Li, Jing-Chun Feng, Xuanyu Tao, Yingli Zhou, Xiao Chen, Song Zhong, Jianzhen Liang, Si Zhang ENGINEERING Environment.2026;[Epub] CrossRef - Proposal of Edaphobacterium genomatis gen. nov., sp. nov. within the family Casimicrobiaceae from metagenome-assembled genomes in accordance with the SeqCode
Luyao Xia, Luotian Lu, Manchun Liu, Jianyu Jiao, Lan Liu, Liqiang Meng, Yalong Liu, Wenjun Li, Caiyu Lu, Bin Ma Systematic and Applied Microbiology.2026; 49(4): 126735. CrossRef - Phylogenomic Characterization of Hydrogenophaga sedimenti sp. nov. and Larkinella fluvii sp. nov. Isolated from Riverbed Soil
Sunho Park, Hyunji Lee, Subin Yook, Chunghwan Baek, Jisu Kim, Seunghui Kwak, Taegun Seo Current Microbiology.2026;[Epub] CrossRef -
Complete genome sequences of metal-oxidizing bacteria
Leptothrix mechoopdaensis
BB-3 and BB-4
Emily J. Fleming, Abigail McIntyre, Gracee K. Tothero, Joyce A. Zimmer, Jessica L. Keffer, Lydia N. Pierce, Kathleen R. Beilsmith, Rosemarie Wilton, Clara S. Chan, Karthik Anantharaman Microbiology Resource Announcements.2026;[Epub] CrossRef - Gelidimonas denitrificans gen. nov., sp. nov., and Gelidimonas diazotrophica sp. nov. psychrophilic bacteria involved in the nitrogen cycle in tundra soils of South Spitsbergen
Jakub Grzesiak, Julia Brzykcy, Peter Young, Elvira Krakowska, Robert Stasiuk, Kamil Krakowski, Przemysław Decewicz, Alina Kiedryńska, Renata Matlakowska, Dariusz Bartosik Systematic and Applied Microbiology.2026; 49(4): 126730. CrossRef - Using the SeqCode to validate the names of reclassified lineages of rhizobia and agrobacteria
Melandré van Lill, Emma T. Steenkamp, Marike Palmer, Chrizelle W. Beukes, Stephanus N. Venter Systematic and Applied Microbiology.2026; 49(4): 126720. CrossRef - Detection and genetic characterization of Tembusu virus and other flaviviruses from mosquitoes in Lao PDR
Chittaphone Vanhnollat, Somsanith Chonephetsarath, Somphavanh Somlor, Veaky Vungkyly, Tiger Soulaphy, Sopha Vongsanga, Irina V. Etobayeva, Thomas Bigot, Gary Wong, Andrew G. Letizia, Paul T. Brey, Philippe Buchy, Khamsing Vongphayloth, Pierre Roques PLOS One.2026; 21(6): e0351023. CrossRef - Phylogenomic and phenotypic investigations of Terrisphaera buseokensis gen. nov., sp. nov., a verrucomicrobium isolated from riverside soil
Jaewoo Yoon, Seong-Ryong Lee, Sanghwa Park Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Aliikangiella litoralis sp. nov. and Aliikangiella aequoris sp. nov., isolated from coastal seawaters of the Yellow Sea
Seungyeop Oh, Yeonjung Lim, Meora Rajeev, Jang-Cheon Cho Journal of Microbiology.2026; 64(5): e2602008. CrossRef - Phylogenomic and metabolic insights into iron reduction metabolism in the genus Deferribacter belonging to the order Deferribacterales
Eva Pouder, Karine Alain, Sophie Mieszkin
Microbial Genomics
.2026;[Epub] CrossRef - Taxonomic description of a novel genus, Parajatrophihabitans gen. nov., in the family Jatrophihabitantaceae
Imen Nouioui, Sarah Kirstein, Gabriele Pötter, Marlen Jando, Juan Pablo Gomez Escribano, Meina Neumann-Schaal, Mathias Müsken, Cathrin Spröer, Boyke Bunk, Yvonne Mast
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Whole genome-based reclassification of the genus Metabacillus: Proposal for five novel genera, Chryseobacillus gen. nov., Cohnibacillus gen. nov., Salimetabacillus gen. nov., Pantoeobacillus gen. nov., and Lutimetabacillus gen. nov. and the description of
Daniel Candia-Herrera, Matías Guerra, Jorge Carrasco-Fernández, Carolina Campos-Quiroz, Marina Garcia-Gomez, José M. Igual, Lorena Carro, Jean Franco Castro Systematic and Applied Microbiology.2026; 49(4): 126734. CrossRef - A giant virus in a small lake: characterization of a new tropical algal virus expands the geographical and genetic diversity of the Brazilian virosphere
Clécio Alonso da Costa Filho, Isadora Luiza de Jesus Canto, Bruna Barbosa Fagundes Botelho, Lethícia Ribeiro Henriques, João Victor Rodrigues Pessoa Carvalho, Ellen Gonçalves de Oliveira, Sara Arêdes da Cunha Souza, Júlia Winkler Souza, Mauricio Teixeira Journal of Virology.2026;[Epub] CrossRef - Emended description of the genus Rhizobacter and reclassification of Ideonella sakaiensis as Pseudideonella sakaiensis gen. nov., comb. nov.
Huibin Lu, Li Chen
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Three Mycobacterium avium genotypes classified by 1.4-Mb genomic inversion and single-nucleotide variations are tightly linked to disease progression
Kentaro Tanaka, Yuuki Bamba, Nobumasa Aoki, Ikumi Yamagishi, Kenjiro Shima, Hideyuki Ogata, Satoshi Shibata, Yasuyoshi Ohshima, Satoshi Watanabe, Hiroshi Moro, Toshiyuki Koya, Mitsuhiro Yamada, Hisatoshi Sugiura, Akira Watanabe, Toshiaki Kikuchi International Journal of Infectious Diseases.2026; 169: 108816. CrossRef - TaxaScope: a container-native, visualization-centric workstation for genome-based bacterial taxonomy
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Xiaoyue Zhang, Caiyu Lu, Luotian Lu, Liqiang Meng, Yalong Liu, Bin Ma Microorganisms.2026; 14(6): 1292. CrossRef - Enhanced suppression of Pseudomonas coronafaciens pv. garcae, the etiological agent of coffee plant bacterial halo blight, by a four-phage cocktail in in-vitro and ex-planta studies: biological and kinetic profiling
Fernanda C. Moreli, Lucas M.R. Rodrigues, Suzete A.L. Destefano, Marta M.D.C. Vila, Carla Pereira, Paul Hyman, Victor M. Balcão Bacteriophage.2026; 1: 100005. CrossRef - Think pink 2.0 - Description of Roseobacter cerffii sp. nov., isolated from the chromerid alga Vitrella brassicaformis, and reclassification of Sulfitobacter sabulilitoris as Billmartinia sabulilitoris, gen. nov., comb. nov.
Jörn Petersen, Victoria Ringel, Orsola Päuker, Anja Frühling, Manfred Rohde, Michael Jarek, Cathrin Spröer, Boyke Bunk, Katharina Huber-Fischer, Silke Pradella, Heike M. Freese, Julia Koblitz, Meina Neumann-Schaal, Henner Brinkmann Systematic and Applied Microbiology.2026; 49(4): 126731. CrossRef - Parasediminibacterium schistidii sp. nov., a novel member of the family Chitinophagaceae isolated from a glacier moss ball in the Canadian High Arctic
Shu-Kuan Wong, Yu Nakajima, Hiroshi Kanda, Vincent Maire, Masaki Uchida Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Isolation and Characterization of Pseudooceanicola aestuariicola sp. nov., from Tidal-Flat Sediments
Ayesha Rehman, Shahzadi Raheela Anum, Naureen Khalid, Keun-Hyeok Yang, Suk Chan Lee, Sathiyaraj Srivansan, Sang Seob Lee Current Microbiology.2026;[Epub] CrossRef -
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Jinjie Zhou, Huidan Tan, Cui-Jing Zhang, Meng Li
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Four novel Pseudoalteromonas species isolated from seawater: Pseudoalteromonas mucoides sp. nov., Pseudoalteromonas aquimarina sp. nov., Pseudoalteromonas maris sp. nov. and Pseudoalteromonas thalassia sp. nov.
Inhyup Kim, Sunho Park, Chunghwan Baek, Seunghui Kwak, Haejin Woo, Hyunji Lee, Subin Yook, Jisu Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Phylogenomic and genome-relatedness analyses resolve genus and family boundaries within the family Verrucomicrobiaceae
Hana Dali, Imed Sbissi, Rihab Hamra, Tesnim Bouzidi, Haifa ElMay, Faten Ghodhbane-Gtari, Maher Gtari
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Mycobacterium toneyamaense sp. nov., a novel rapidly growing mycobacterium isolated from human patients
Takeshi Komine, Makoto Nakaya, Nagatoshi Fujiwara, Kiyoharu Fukushima, Yuki Matsumoto, Hiroshi Kida, Manabu Ato, Satoshi Mitarai, Hanako Fukano
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Leucogemmata humicola gen. nov., sp. nov., an oligotrophic bacterium of the under-represented phylum Gemmatimonadota isolated from soil
Rikuta Suzuki, Yumi Shimomura, Tomoki Iwashita, Xiang-Ying Meng, Kazuki Mori, Akiko Enomoto, Setsu Kato, Yutaka Nakashimada, Kosuke Tashiro, Hideyuki Tamaki, Yoshiteru Aoi
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Neffella xylocopae gen. nov., sp. nov., a novel host-specific gut symbiont of Xylocopa carpenter bees in the family Orbaceae
Alan Emanuel Silva Cerqueira, Jo-anne C. Holley, Sarah C. Hatcher, Pedro Marcus Pereira Vidigal, Laila E. Phillips, Nancy A. Moran
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Culture-enriched sequencing reveals river confluence sediments as high-risk reservoirs of viable multidrug-resistant pathogens
Yi Li, Huijuan Huang, Bi Luo, Rong Wang, Zhiwei Zhu Journal of Hazardous Materials.2026; 514: 142756. CrossRef - Isolation and characterization of Pseudarthrobacter cremeus sp. nov. and Ideonella flava sp. nov. from mountain soil
Chunghwan Baek, Sunho Park, Hyunji Lee, Subin Yook, Seunghui Kwak, Jisu Kim, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Distinguishing
Leptothrix
and
Sphaerotilus
genera by an integrated genomic-phenotypic analysis supported by new
Leptothrix
genomes
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Karla Vasari, Maja Kovačević, Niko Kasalo, Snježana Kazazić, Ivan Mijakovic, Göran Klobučar, Damjan Franjevic, Josip Skejo, Tomislav Domazet-Lošo, Brian G. Shelton, Marina Santic, Roberta Sauerborn Klobucar Life.2026; 16(7): 1187. CrossRef -
Promicromonospora noduliphila sp. nov., a nodulation-enhancing actinobacterium isolated from the root nodules of grey-hair acacia planted in the Khurais desert, Saudi Arabia
Khulud Alghannam, Grégoire Michoud, Alan Barozzi, Sarah Al Romaih, Rawan Alhazmi, Bob Vernooij, Kennedy Odokonyero, Adair Gallo, Himanshu Mishra, Daniele Daffonchio, Ramona Marasco
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Shotgun metagenomics uncovers novel features of the cyanobacterial community in a large, shallow lake in Central Italy
Nico Salmaso, Leonardo Cerasino, Margherita Di Brizio, Massimo Pindo, Adriano Boscaini Hydrobiologia.2026;[Epub] CrossRef - Resolving the evolutionary duality of marine symbionts: redefining the genus Endozoicomonas and proposing Neoendozoicomonas gen. nov
Flúvio Modolon, Alessandro N Garritano, Philip Hugenholtz, Christian R Voolstra, Tina Keller-Costa, Rodrigo Costa, Torsten Thomas, Raquel S Peixoto ISME Communications.2026;[Epub] CrossRef - Phylogenomic analysis of Paenibacillus larvae isolates from Slovakia predicts regional genomic clustering
Anna Kopcakova, Jana Kiskova, Silvia Ivorova, M. Pilar Garcillán-Barcia, Peter Pristas Frontiers in Veterinary Science.2026;[Epub] CrossRef - Comparative Genomic Insights into Genomic GC Variation in the Genus Kordiimonas
Ruo-Ying Zhuo, Jia-Xi Li, Yue-Ran Zhu, Yu-Chen Deng, Xiang-Yang Yu, Cong Sun, Lin Xu Diversity.2026; 18(7): 421. CrossRef -
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Yea-Lin Moon, Kyoungdong You, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Characterization of Marinibium conchae gen. nov. sp. nov., a novel psychrotolerant mesophilic bacterium from mussels
Young-Mi Lee, Jaincy N. Jayan, Ha-Jung Moon, Suk-Chan Lee, Sathiyaraj Srinivasan, Sang-Seob Lee
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Electricity generation and shifts in methanogenesis mediated by an oil-field-derived electroactive bacterium in legacy tar pit sediments
Miho Watanabe, Chihiro Takayama, Nanaho Yoshida, Kosuke Watanabe, Kei Takahashi, Fumiaki Takakai, Kunihiro Okano, Nobuo Kaku, Naoyuki Miyata Cleaner Energy Systems.2026; 14: 100261. CrossRef - Janthinobacterium foliorum sp. nov., isolated from the decayed leaves of wild alpine rhododendron
Hui-Bin Lu, Ling-Yang Kong, Li Chen, Guang-Jie Chen Systematic and Applied Microbiology.2026; 49(4): 126736. CrossRef - Caldifarcimen microaerophilum gen. nov., sp. nov., a facultatively anaerobic, thermophilic bacterium of a novel bacterial phylum, Caldifarciminota phyl. nov., formerly called candidate phylum WOR-3, description of Caldifarciminaceae fam. nov., Caldifarcim
Koji Mori, Kohei Hidaka, Satoshi Tamazawa, Akira Hosoyama, Hideyuki Tamaki, Takeshi Kakegawa, Satoshi Hanada
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - The van Niel international prize for studies in bacterial systematics, awarded in 2026 to Jon Jongsik Chun
Iain C. Sutcliffe, Edward R. B. Moore, Aharon Oren
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Eximiradius proteiniborus gen. nov., sp. nov., the first cultivated representative of the “Candidatus Kapaibacteriia” (lineage OPB56) and a proposal of Eximiradiaceae fam. nov., Eximiradiales ord. nov., Eximiradiia class. nov. within the phylum Bacteroido
Olga A. Podosokorskaya, Alexander G. Elcheninov, Alexandra A. Klyukina, Evgenii N. Frolov, Alexander Y. Merkel Systematic and Applied Microbiology.2026; 49(5): 126753. CrossRef - Genome-based analysis of the taxonomic structure of the genus Stenotrophomonas
Valeriya V. Shapovalova, Elvira R. Shajdullina, G.A. Shipulin, Mikhail V. Edelstein Clinical Microbiology and Antimicrobial Chemotherapy.2026; 28(1): 4. CrossRef - Comparative genomic analyses provide new insights into phylogenetic and functional diversification in genus Fenollaria
Shaojing Wang, Lijuan Kang, Mei Li, Xiaodong Zhou, Bowen Li, Fei Wang, Jinhuan Meng, Changying Li, Kuo Yang Frontiers in Microbiology.2026;[Epub] CrossRef - Sphingomonas incarnata sp. nov., an endophytic bacterium with bioactive potential isolated from passionfruit leaves
Luis Gabriel Cueva-Yesquén, Kariny Marley de Castro Martins, Kelly Johanna Hidalgo-Martinez, Adilson Sartoratto, Adriana da Silva Santos de Oliveira, Itamar Soares de Melo, Fabiana Fantinatti-Garboggini BMC Microbiology.2026;[Epub] CrossRef - Non-nodulating Paenirhizobium fix nitrogen in association with cereal roots
Matthew J Campbell, Beatriz Jorrin, Zohar Katz, Andrzej Tkacz, Raphael Ledermann, Philip S Poole ISME Communications.2026;[Epub] CrossRef - Genomic and polyphasic characterization of six novel Hymenobacter species isolated from soil in Korea
Yuna Park, Seona Park, Soohyun Maeng, Myung Kyum Kim Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Description of Sulfitobacter gelatinilyticus sp. nov. and Sulfitobacter weihaiensis sp. nov., isolated from marine sediment
Jing Zhang, Zou-Yu Jin, Hai-Qing Zhang, Zi-Hao Wan, Yuan-Xi Xiao, Hui-Xing Li, Zong-Jun Du Antonie van Leeuwenhoek.2026;[Epub] CrossRef - Genomic and phenotypic insights into Pseudocolwellia antarctica sp. nov., a novel psychrotolerant bacterium with symbiotic potential from Antarctic zooplankton
Min Kyo Kim, Seung Ju Oh, Bo Min Lee, Jun Lee, Chung Yeon Hwang Scientific Reports.2026;[Epub] CrossRef - Rhodococcus dendrobeaniae sp. nov., an actinomycete isolated from an Arctic marine invertebrate exhibiting cytotoxic activity, and an emended description of Rhodococcus sovatensis
Kim van Wezel, Elaine M. Romines, Kine Ø. Hansen, Jeanette H. Andersen, Espen H. Hansen, Patrycja Golińska, Yannik K.H. Schneider Systematic and Applied Microbiology.2026; 49(5): 126755. CrossRef - Deciphering the genomic features of four newly isolated polyvalent bacteriophages infecting Pseudomonas coronafaciens pv. garcae: A tale of small beginnings
Fernanda C. Moreli, Carlos A. Quinde, Basilio Cieza, Aakash Basu, Marta M.D.C. Vila, Carla Pereira, Paul Hyman, Victor M. Balcão Bacteriophage.2026; 1: 100010. CrossRef - Routine methods misidentify Serratia spp.: Limitations of MALDI-TOF MS revealed by whole-genome sequencing
Ingrid Macedo Felício, Edgard Freitas Vianna, Mila Muraro Almeida, Jéssica Oliveira Abreu, Robson Souza Leão, Elizabeth Andrade Marques Diagnostic Microbiology and Infectious Disease.2026; 116(4): 117624. CrossRef - Melioribacter sulfuriphilus sp. nov., facultatively anaerobic thermophilic sulfur- and thiosulfate-respiring bacterium from Karmadon hot springs of North Ossetia (Russian Federation)
Olga A. Podosokorskaya, Alexander Y. Merkel, Andrei A. Novikov, Alexandra A. Klyukina, Alexander G. Elcheninov Systematic and Applied Microbiology.2026; 49(6): 126768. CrossRef - Description of Kinneretia algicola sp. nov. isolated from a freshwater green alga, and reclassification of 9 species within the family Sphaerotilaceae
Byeong Jun Choi, Hülya Bayburt, Hui Seong Won, Dae Gyu Choi, Ji Young Jung, Che Ok Jeon Systematic and Applied Microbiology.2026; 49(6): 126771. CrossRef - Phylogenetic diversity, ecological function, and evolutionary history of three novel phyla: Yinglongibacterota, Xuanmingibacterota, and Gonggongibacterota
Jing‐Yi Zhang, Man‐Chun Liu, Zheng‐Han Lian, Meng‐Meng Li, Lei Gao, Yu‐Ting Ouyang, Maite Ortúzar, Lan Liu, Nimaichand Salam, Jian‐Yu Jiao, Wen‐Jun Li Journal of Systematics and Evolution.2026;[Epub] CrossRef - Novel Thermophilic Species of Limisphaera Demonstrate Facultatively Anaerobic Mode of Life and Utilize a Wide Range of Carbohydrates
Olga A. Podosokorskaya, Tatyana G. Sokolova, Kseniya S. Zayulina, Alexandra A. Klyukina, Polina R. Klepikova, Andrei A. Novikov, Alexander Y. Merkel, Alexander G. Elcheninov Life.2026; 16(9): 1543. CrossRef - Enrichment and characterization of a haloalkaline-tolerant anammox bacterium
Han-Yin Chuang, Jer-Horng Wu, Shan-Hua Chen, Wei-Yu Chen, Li-Jin Fong, Yi-Ting Lin The ISME Journal.2026;[Epub] CrossRef - Pseudaquabacterium prasiolae sp. nov., Isolated from the Freshwater Green Alga Prasiola japonica, and Rubrivivax soli sp. nov., Isolated from Soil, with Reclassification of Aquabacterium humicola as Pseudaquabacterium humicola comb. nov.
Jae Kyeong Lee, Seo Hui Choi, Seon Hoo Jung, Yeong Eun Kwon, Jeong Min Kim, Che Ok Jeon Current Microbiology.2026;[Epub] CrossRef - Megamimivirus double-stranded DNA linear genomes flanked by highly diverse terminal inverted repeats
Yucheng Xia, Lanlan Cai, Boyu Ding, Baiyu Su, Rui Zhang, Kristin N. Parent Journal of Virology.2026;[Epub] CrossRef - Taxonomic characterization and secondary metabolic profiling of three novel species of the genus Kinneretia isolated from crater Lake water
Zi-Xuan Liu, You-Jun Liao, Ya-Jing Yu, Ai-Hua Li Systematic and Applied Microbiology.2026; 49(6): 126770. CrossRef - Acinetobacter legionensis sp. nov. and Acinetobacter psychrotolerans sp. nov. isolated from different types of retail meat
Alba Puente, Cristina Galisteo, José F. Cobo-Díaz, Filipa Grosso, Coral Barcenilla, Mercedes López, Miguel Prieto, Luisa Peixe, Avelino Alvarez-Ordóñez
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Expanding the diversity of Desulfovibrio from the human gut: Desulfovibrio intestinivivus sp. nov., Desulfovibrio desulfopostgatei sp. nov. and Desulfovibrio faecalis sp. nov
Marnie Barham, Melinda J. Mayer, Kathryn Gotts, Arjan Narbad, Lizbeth Sayavedra
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - A rice rhizosphere-derived methanotrophic consortium enhances root growth and reduces methane intensity in flooded soil
Rey Anthony Sanjorjo, Tenzin Tseten, Jong-Wook Son, Snowie Jane G. Ampode, Lorraine Joule B. Estrada, So Yeong Park, Soon-Kyeong Kwon, Pil-Joo Kim, Sang-Hwal Yoon, Moonhyuk Kwon, Min-Kyoung Kang, Seon-Won Kim Applied Soil Ecology.2026; 227: 107485. CrossRef - Description of Demequina pilifera sp. nov. and Demequina ureilytica sp. nov. isolated from a mixture of oil production fluids in Shengli Oilfield
Yuwei Liu, Danni Wu, Ya-Jing Yu, Xin Song, Qiongyao Chen, Man Cai, Hong Ming
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Biodegradation of petroleum hydrocarbon by Gordonia oleivorans sp. nov. isolated from oil-contaminated soil
Thi Tuyet Nhan Le, Jin Jun, Hosun Aum, Jihoon Jung, Jaisoo Kim Scientific Reports.2026;[Epub] CrossRef - Phylogenomic analysis and characterization of a novel metagenome-assembled genome from the Bay of Bengal and description of Candidatus Niobacter visakhapatnamensis gen. nov., sp. nov
Naga Radha Srinivas Tanuku, Anil Kumar Pinnaka, Pradeep Kumar Patel, Hardik Chavda, Naveen Sagar Garbhapu, Satyanarayana Reddy Tadi, Ann Rose Archives of Microbiology.2026;[Epub] CrossRef -
Pan-proteome regulation of marine
Synechococcus
nutrient stress plasticity
Nathan S. Garcia, Mak A. Saito, Renne Harcourt, Matthew R. McIlvin, Adam C. Martiny, Jizhong Zhou mBio.2026;[Epub] CrossRef - Beyond the boundaries of microbial diversity in radioactive environments: novel microbial species isolated from a former silver-uranium mine’s radon-saturated waters
Gabriela Kapinusova, Kunal Jani, Petr Pajer, Alena Filipova, Pavel Ulbrich, Tomas Cajthaml, Michal Strejcek, Jachym Suman, Ondrej Uhlik BMC Microbiology.2026;[Epub] CrossRef - Parasalinivibrio latis gen. nov., sp. nov., isolated from the distal gut of healthy farmed Asian Seabass (Lates calcarifer)
Shuan Er, Melissa Soh, Adrian Low, Henning Seedorf Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Acidisoma cladoniae sp. nov., an acidotolerant bacterium isolated from an Antarctic lichen
Un Cho, Jehyun Jeon, Woohyun Kim, Soon Gyu Hong, Hyoungseok Lee, Yung Mi Lee Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Phenylobacterium ferrooxidans sp. nov., isolated from a sub-surface geothermal aquifer in Iceland
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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Pelomonas baiyunensis sp. nov., Pelomonas candidula sp. nov., Pelomonas dachongensis sp. nov., Pelomonas lactea sp. nov., Pelomonas margarita sp. nov., Pelomonas nitida sp. nov., Pelomonas parva sp. nov. and Roseateles rivi sp. nov., isolated
Huibin Lu, Guannan Li, Shan Yu
International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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Mehdi Fatahi-Bafghi
International Journal of Systematic and Evolutionary Microbiology
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Hao-hao Wang, Chi Zhang, Ya-qin Chen, Yi-fan Guo, Li-jian Ding, Sheng-fa Zhang, Gai-jun Du, Wei-yan Zhang, Shan He Systematic and Applied Microbiology.2025; 48(5): 126645. CrossRef - Duganella hordei sp. nov., Duganella caerulea sp. nov., and Duganella rhizosphaerae sp. nov., isolated from barley rhizosphere
Katsumoto Kishiro, Nurettin Sahin, Daisuke Saisho, Naoki Yamaji, Jun Yamashita, Yuki Monden, Tomoyuki Nakagawa, Keiichi Mochida, Akio Tani Antonie van Leeuwenhoek.2025;[Epub] CrossRef - Carnimonas bestiolae sp. nov. and Cernens ardua gen. nov., sp. nov.: new halotolerant bacteria from the invasive solitary bee Megachile sculpturalis
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Radicibacter daui, gen. nov., sp. nov., isolated from tomato rhizosphere soil and proposal of Radicibacteraceae fam. nov. and Radicibacterales ord. nov.
Joo Hwan Kwon, Lemessa Etana Bultum, Seongmin Lee, Sang-Moo Lee, Minseo Choi, Seon-Woo Lee
International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Ovoidimarina sediminis gen. nov., sp. nov., a novel member of the Roseobacteraceae isolated from tidal flat sediment
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International Journal of Systematic and Evolutionary Microbiology
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Puribacter membranae gen. nov., sp. nov., isolated from a biofilm of a membrane bioreactor (MBR) treating sewage
Masashi Hatamoto
International Journal of Systematic and Evolutionary Microbiology
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Solicola agrisoli sp. nov., a novel actinobacterium isolated from agricultural soil in Republic of South Korea
Syed Muhammad Khizar Shah, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
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International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Acinetobacter zhairhuonensis sp. nov., isolated from sediments of the East China Sea
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.2025;[Epub] CrossRef - Youngimonas ophiurae sp. nov., a Quorum-Quenching Marine Bacterium Isolated from a Brittle Star in the South China Sea, and Reclassification of Lutimaribacter litoralis as Youngimonas litoralis comb. nov.
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Mustafa Galib, Viet Hung Nguyen
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International Journal of Systematic and Evolutionary Microbiology
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Aleyna Nalcaoglu Senocak, Kadriye Inan Bektas, Sabriye Canakci, Ali Osman Belduz
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef -
Methylomonas stagni sp. nov., a methanotroph of the genus Methylomonas, from a reservoir pond in Korea
Joo-Han Gwak, Chanmee Seo, Yongman Kim, Joong-Wook Park, Sung-Keun Rhee
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Genome-based reclassification of Metallosphaera prunae as a later heterotypic synonym of Metallosphaera sedula
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International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genome‐based taxonomic analysis of the genus Pseudoalteromonas reveals heterotypic synonyms
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Arcicella gelida sp. nov. and Arcicella lustrica sp. nov., isolated from streams in China and re-examining the taxonomic status of all the genera within the families Spirosomataceae and Cytophagaceae
Huibin Lu, Li Chen, Linpei Huang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Sustained bacterial N2O reduction at acidic pH
Guang He, Gao Chen, Yongchao Xie, Cynthia M. Swift, Diana Ramirez, Gyuhyon Cha, Konstantinos T. Konstantinidis, Mark Radosevich, Frank E. Löffler Nature Communications.2024;[Epub] CrossRef -
Paenalcaligenes faecalis sp. nov., a novel species of the family Alcaligenaceae isolated from chicken faeces
Yiran Zhang, John Quensen, Bo Chen, Hailong Li, James Tiedje, Wei Sun, Xun Qian
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Rhodoferax lithotrophicus sp. nov., a neutrophilic iron-oxidizing and -reducing bacterium isolated from iron-rich freshwater sediments
Shingo Kato, Takashi Itoh, Takao Iino, Mitsuo Sakamoto, Moriya Ohkuma
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Paenibacillus suaedae sp. nov. and Paenibacillus violae sp. nov., isolated from the roots of Suaeda japonica Makino and Viola mandshurica W. Becker with plant growth-promoting potential
Inhyup Kim, Sunho Park, Yonghee Jung, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genetic potential for aerobic respiration and denitrification in globally distributed respiratory endosymbionts
Daan R. Speth, Linus M. Zeller, Jon S. Graf, Will A. Overholt, Kirsten Küsel, Jana Milucka Nature Communications.2024;[Epub] CrossRef -
Description of the first marine-isolated member of the under-represented phylum
Gemmatimonadota
, and the environmental distribution and ecogenomics of
Gaopeijiales
ord. nov.
Yu-Qi Ye, Meng-Qi Ye, Xin-Yue Zhang, You-Zhi Huang, Zi-Yang Zhou, Yan-Jun Feng, Zong-Jun Du, Thulani P. Makhalanyane mSystems.2024;[Epub] CrossRef -
Ideonella margarita sp. nov., Ideonella lacteola sp. nov., Pseudaquabacterium inlustre sp. nov. and Pseudaquabacterium rugosum sp. nov., isolated from streams in China and re-examining the taxonomic status of all the genera within the family
Huibin Lu, Li Chen
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Comparative genomics of obligate predatory bacteria belonging to phylum
Bdellovibrionota
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Sidney C. Davis, Joseph Cerra, Laura E. Williams, Barbara J. Campbell mSphere.2024;[Epub] CrossRef - Isolation and characterization of cellulose-mineralizing haloalkaliphilic bacteria from Siberian soda lakes
Dimitry Y. Sorokin, Alexander Y. Merkel, Tatjana V. Khizhniak Frontiers in Microbiology.2024;[Epub] CrossRef - The genome of a new Halorubrum distributum strain ICIS4 isolated from the culture of a microalga Dunaliella salina
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Lacrimispora brassicae sp. nov. isolated from fermented cabbage, and proposal of Clostridium indicum Gundawar et al. 2019 and Clostridium methoxybenzovorans Mechichi et al. 1999 as heterotypic synonyms of Lacrimispora amygdalina (Parshina et
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International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Clostridium lapidicellarium sp. nov. and Clostridium moutaii sp. nov., two species isolated from fermentation cellar-producing sauce-flavour Chinese baijiu
Fan Yang, Hui Wang, Liang-Qiang Chen, Nan Zhou, Jian-Jun Lu, Xiu-Xin Pu, Bo Wan, Li Wang, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
Piotr Rozwalak, Jakub Barylski, Yasas Wijesekara, Bas E. Dutilh, Andrzej Zielezinski Nature Communications.2024;[Epub] CrossRef - Description of Streptococcus dentalis sp. nov., Streptococcus gingivalis sp. nov., and Streptococcus lingualis sp. nov., Isolated from Human Oral Cavities
Beom-Jin Goo, Young-Sik Choi, Do-Hun Gim, Su-Won Jeong, Jee-Won Choi, Hojun Sung, Jae-Yun Lee, Jin-Woo Bae Journal of Microbiology.2024; 62(11): 973. CrossRef - Hohaiivirga grylli gen. nov., sp. nov., a New Member of the Family Methylobacteriaceae, Isolated from Cricket (Gryllus chinensis)
Hong-Chuan Wang, Meng-Han Huang, Dan-Yuan Guo, Wei He, Lu Wang, Zi-Yue Fu, Wen-Jun Li, Ai Hua Zhang, Dao-Feng Zhang Current Microbiology.2024;[Epub] CrossRef -
Cellulomonas alba sp. nov. and Cellulomonas edaphi sp. nov., isolated from wetland soils
Sunho Park, Inhyup Kim, Geeta Chhetri, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Age, metabolisms, and potential origin of dominant anammox bacteria in the global oxygen-deficient zones
Rui Zhao, Irene H Zhang, Amal Jayakumar, Bess B Ward, Andrew R Babbin ISME Communications.2024;[Epub] CrossRef - Limosilactobacillus allomucosae sp. nov., a novel species isolated from wild boar faecal samples as a potential probiotic for domestic pigs
Binbin Chen, Shaktheeshwari Silvaraju, Sharifah Nora Ahmad Almunawar, Yu Chyuan Heng, Jolie Kar Yi Lee, Sandra Kittelmann Systematic and Applied Microbiology.2024; 47(6): 126556. CrossRef - Evaluation of sequence-based tools to gather more insight into the positioning of rhizogenic agrobacteria within the Agrobacterium tumefaciens species complex
Pablo Roberto Vargas Ribera, Nuri Kim, Marc Venbrux, Sergio Álvarez-Pérez, Hans Rediers, Muhammad Anwar PLOS ONE.2024; 19(11): e0302954. CrossRef -
Chitiniphilus purpureus sp. nov., a novel chitin-degrading bacterium isolated from crawfish pond sediment
Kaiyang Li, Xiong Luo, Rongrong Fan, Zhuoran Ding, Shixue Zheng, Zhengjun Chen
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Thalassotalea aquiviva sp. nov., and Thalassotalea maritima sp. nov., Isolated from Seawater of the Coast in South Korea
Jina Lee, Seung-Hui Song, Kira Moon, Nakyeong Lee, Sangdon Ryu, Hye Seon Song, Sung Moon Lee, Yun Ji Kim, Se Won Chun, Kyung-Min Choi, Aslan Hwanhwi Lee Journal of Microbiology.2024; 62(12): 1099. CrossRef - Cold adaptation and response genes of Antarctic Cryobacterium sp. SO2 from the Fildes Peninsula, King George Island
Chui Peng Teoh, Marcelo González‑Aravena, Paris Lavin, Clemente Michael Vui Ling Wong Polar Biology.2024; 47(2): 135. CrossRef - Xiashengella succiniciproducens gen. nov., sp. nov., a succinate-producing bacterium isolated from an anaerobic digestion tank in the family Marinilabiliaceae of the order Bacteroidales
Hao-Jie Huang, Xi Zhang, Xin-Wei Sun, Biao Chen, Xiu-Tong Li, Nan Zhou, Rashidin Abdugheni, Qiu-Yin Cheng, Tie-Jun Zhang, Yao Liu, Yong Jiang, Ye Deng, Shuang-Jiang Liu, Cheng-Ying Jiang Archives of Microbiology.2024;[Epub] CrossRef -
Paracoccus spongiarum sp. nov., isolated from the marine sponge, Phakellia elegans
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Sorlinia euscelidii gen. nov., sp. nov., a novel acetic acid bacterium isolated from the leafhopper Euscelidius variegatus (Hemiptera: Cicadellidae)
Ramona Marasco, Grégoire Michoud, Kholoud A. Seferji, Elena Gonella, Elisa Garuglieri, Eleonora Rolli, Alberto Alma, Francesca Mapelli, Sara Borin, Daniele Daffonchio, Elena Crotti
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Comparative genomics of the genus Halioglobus reveals the genetic basis for the reclassification of Halioglobus pacificus as Parahalioglobus pacificus gen. nov. comb. nov
Jake Adolf V. Montecillo International Microbiology.2024; 27(6): 1831. CrossRef -
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Martin Boutroux, Sandrine Favre-Rochex, Olivier Gorgette, Gérald Touak, Estelle Mühle, Christiane Bouchier, Olivier Chesneau, Frédéric J. Veyrier, Dominique Clermont, Praveen Rahi
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Pedobacter rhodius sp. nov. and Pedobacter punctiformis sp. nov., isolated from soil
Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Taxonomic characterization of Sphaerotilus microaerophilus sp. nov., a sheath-forming microaerophilic bacterium of activated sludge origin
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Sphingomonas rustica sp. nov. and Sphingomonas agrestis sp. nov., novel carotenoid-producing bacterial species isolated from farm soil
Hyunji Lee, Inhyup Kim, Sunho Park, Haejin Woo, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Hidden genomic diversity drives niche partitioning in a cosmopolitan eukaryotic picophytoplankton
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Flagellimonas baculiformis sp. nov. and Flagellimonas crocea sp. nov., isolated from surface seawater of the Pacific Ocean
Ming-lei Wang, Ge-Yi Fu, Xue-Wei Xu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Two Novel Bacterial Species, Rhodanobacter lycopersici sp. nov. and Rhodanobacter geophilus sp. nov., Isolated from the Rhizosphere of Solanum lycopersicum with Plant Growth-Promoting Traits
Haejin Woo, Inhyup Kim, Geeta Chhetri, Sunho Park, Hyunji Lee, Subin Yook, Taegun Seo Microorganisms.2024; 12(11): 2227. CrossRef - Preliminary comparative genomics analysis among Corynebacterium kroppenstedtii complex necessitates a reassessment of precise species associated with mastitis
Ying Huang, Ming-Hui Song, Shun-Guang Li, Hong- Yu Shen, Ping-Hua Qu, Dao-Feng Zhang Journal of Applied Microbiology.2024;[Epub] CrossRef - Salmonirosea aquatica gen. nov., sp. nov., a Novel Genus within the Family Spirosomaceae, Was Isolated from Brackish Water in the Republic of Korea
Kiwoon Baek, Sumin Jang, Jaeduk Goh, Ahyoung Choi Microorganisms.2024; 12(8): 1671. CrossRef - Phylogenomic analyses of the genus Actinoplanes: description of four novel genera
Ivan Roman, Victor Fedorenko, Oleksandr Gromyko
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - A hotspot of diversity: novel Shewanella species isolated from Baltic Sea sediments delineate a sympatric species complex
Alberto J. Martín-Rodríguez, Víctor Fernández-Juárez, Valerie D. Valeriano, Indiwari Mihindukulasooriya, Livia Ceresnova, Enrique Joffré, Susanne Jensie-Markopoulos, Edward R. B. Moore, Åsa Sjöling
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.2024;[Epub] CrossRef - An evolutionary view of the Fusarium core genome
Daniel A. Gomez-Chavarria, Alvaro L. Rua-Giraldo, Juan F. Alzate BMC Genomics.2024;[Epub] CrossRef - Complete genome sequence of a winter season Vibrio facilitates discovery of a novel subclade of cold-adapted species in the albus clade
Paul D. Kastner, Stephen E. Noell, David A. Essig
Microbial Genomics
.2024;[Epub] CrossRef - Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematicsin addressing challenges in the meta-data era
Jian-Yu Jiao, Rashidin Abdugheni, Dao-Feng Zhang, Iftikhar Ahmed, Mukhtiar Ali, Maria Chuvochina, Svetlana N Dedysh, Xiuzhu Dong, Markus Göker, Brian P Hedlund, Philip Hugenholtz, Kamlesh Jangid, Shuang-Jiang Liu, Edward R B Moore, Manik Prabhu Narsing Ra National Science Review.2024;[Epub] CrossRef -
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Dorota Ochońska, Monika Brzychczy-Włoch Advancements of Microbiology.2024; 63(3): 157. CrossRef - Characterization of a Novel Species of Legionella Isolated from a Healthcare Facility: Legionella resiliens sp. nov
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Jake Adolf V. Montecillo, Merell P. Billacura, Maria Distressa G. Billacura Current Microbiology.2024;[Epub] CrossRef - Schauerella fraxinea gen. nov., sp. nov., a bacterial species that colonises ash trees tolerant to dieback caused by Hymenoscyphus fraxineus
Undine Behrendt, Valentin Burghard, Sonja Wende, Kristina Ulrich, Jacqueline Wolf, Meina Neumann-Schaal, Andreas Ulrich Systematic and Applied Microbiology.2024; 47(4): 126516. CrossRef -
Roseateles subflavus sp. nov. and Roseateles aquae sp. nov., isolated from artificial pond water and Roseateles violae sp. nov., isolated from a Viola mandshurica root
Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - New Drinking Water Genome Catalog Identifies a Globally Distributed Bacterial Genus Adapted to Disinfected Drinking Water Systems
Ashwin S Sudarshan, Zihan Dai, Marco Gabrielli, Solize Oosthuizen-Vosloo, Konstantinos T. Konstantinidis, Ameet J Pinto Environmental Science & Technology.2024; 58(37): 16475. CrossRef - Phylogenomic evaluation of Mangrovimicrobium sediminis gen. nov. sp. nov., the first nitrogen fixing member of the family Halieaceae adapted to mangrove habitat and reclassification of Halioglobus pacificus to Pseudohaliglobus pacificus comb. nov.
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Eubacterium album sp. nov., a butyrate-producing bacterium isolated from faeces of a healthy human
Feng-Lan Liu, Rashidin Abdugheni, Cong-Guo Ran, Nan Zhou, Shuang-Jiang Liu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode
Daniel Tamarit, Stephan Köstlbacher, Kathryn E. Appler, Kassiani Panagiotou, Valerie De Anda, Christian Rinke, Brett J. Baker, Thijs J.G. Ettema Systematic and Applied Microbiology.2024; 47(4): 126525. CrossRef -
Alterisphingorhabdus coralli gen. nov. sp. nov., a novel aerobic anoxygenic phototrophic bacteria isolated from reef-building coral
Chang Yan, Kun Zhang, Songbiao Shi, Lili Jian, Beilin Chen, Syed Raziuddin Quadri, Xinpeng Tian
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Raúl Riesco, Martha E. Trujillo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Polymorphospora lycopeni sp. nov., a lycopene-producing actinomycetes isolated from lakeside soil sample of Baiyangdian
Jiashan Liu, Shilong Li, Xiaomin Duan, Hongmei Li, Xiumin Zhang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Reclassification of Butyrivibrio crossotus Moore et al. 1976 (Approved Lists 1980) into a novel genus as Eshraghiella crossota gen. nov., comb. nov.
Mehdi Fatahi-Bafghi
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Analysis of the genetic diversity in RNA-directed RNA polymerase sequences: implications for an automated RNA virus classification system
Zhongshuai Tian, Tao Hu, Edward C Holmes, Jingkai Ji, Weifeng Shi Virus Evolution.2024;[Epub] CrossRef - Fodinisporobacter ferrooxydans gen. nov., sp. nov.—A Spore-Forming Ferrous-Oxidizing Bacterium Isolated from a Polymetallic Mine
Zhen Jiang, Xiutong Li, Zonglin Liang, Zebao Tan, Nan Zhou, Ying Liu, Zhenghua Liu, Huaqun Yin, Kun Luo, Supawadee Ingsriswang, Shuangjiang Liu, Chengying Jiang Microorganisms.2024; 12(5): 853. CrossRef - An abundant bacterial phylum with nitrite-oxidizing potential in oligotrophic marine sediments
Rui Zhao, Steffen L. Jørgensen, Andrew R. Babbin Communications Biology.2024;[Epub] CrossRef - Genomic and phenotypic characterization of 26 novel marine bacterial strains with relevant biogeochemical roles and widespread presence across the global ocean
Xavier Rey-Velasco, Teresa Lucena, Ana Belda, Josep M. Gasol, Olga Sánchez, David R. Arahal, María J. Pujalte Frontiers in Microbiology.2024;[Epub] CrossRef - Ignisphaera cupida sp. nov., a hyperthermophilic hydrolytic archaeon from a hot spring of Uzon (Kamchatka), and emended description of the genus Ignisphaera
Olga A. Podosokorskaya, Alexander G. Elcheninov, Alexandra A. Klyukina, Alexander Y. Merkel Systematic and Applied Microbiology.2024; 47(5): 126541. CrossRef - Genomic diversity in Paenibacillus polymyxa: unveiling distinct species groups and functional variability
Adrian Wallner, Livio Antonielli, Ouiza Mesguida, Patrice Rey, Stéphane Compant BMC Genomics.2024;[Epub] CrossRef - Comparative genomic analyses of Cutibacterium granulosum provide insights into genomic diversity
Peishan Chen, Shaojing Wang, Hongyan Li, Xiaoye Qi, Yuanyuan Hou, Ting Ma Frontiers in Microbiology.2024;[Epub] CrossRef - A new insight on the xyl upper operon revealed through genomic investigation strategy
Xuefeng Tian, Shaojing Wang, Peishan Chen, Mingbo Yang, Zhaoying Su, Yue Ming, Guoqiang Li, Ting Ma International Biodeterioration & Biodegradation.2024; 189: 105748. CrossRef - Genome-based reclassification of Spiroplasma atrichopogonis Koerber et al. 2005 as a later heterotypic synonym of Spiroplasma mirum Tully et al. 1982
Vatsal Bhargava, Darshana Lahon, Sonal Gupta, Jasvinder Kaur, Pushp Lata
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Lysinibacillus piscis sp. nov. isolated from the gut of mottled spinefoot Siganus fuscescens
Hiyu Kanbe, Yuki Sano, Kazumori Mise, Shusei Kanie, Natsumi Ushijima, Keisuke Kawano, Minoru Kihara, Hideomi Itoh Archives of Microbiology.2024;[Epub] CrossRef - Specific amino acid changes correlate with pathogenic flavobacteria
Vincent Gélinas, Valérie E. Paquet, Maude F. Paquet, Steve J. Charette, Antony T. Vincent Genome.2024; 67(10): 368. CrossRef -
Aurantiacibacter flavus sp. nov. and Aurantiacibacter gilvus sp. nov., isolated from the mudflat of Suaeda japonica colonies
Sunho Park, Inhyup Kim, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Splendidivirga corallicola gen. nov., sp. nov. and Agaribacillus aureus gen. nov., sp. nov., two bacteria isolated from coral Porites lutea, and proposal of Splendidivirgaceae fam. nov.
Jin Li, Jixin Luo, Mi Li, Chenyan Wang, Siyu Hu, Kun Lu, Guanghua Wang
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - The Genome of a New Halorubrum distributum Strain ICIS4 Isolated from the Culture of a Microalga Dunaliella salina
E. A. Selivanova, A. S. Balkin, Yu. A. Khlopko, V. Ya. Kataev, A. O. Plotnikov Microbiology.2024; 93(4): 482. CrossRef - Peteryoungia algae sp. nov. isolated from seaweeds of Gouqi Island, China, and its unique genetic features among Peteryoungia strains
Jun Yin, Min He, Xiao-Xiao Liu, Chang-Bin Ren, Hou-Hong Liu, Hai Luo, Gen Chen, Ze-Fei Wang, Sanjit Chandra Debnath, Pin-Mei Wang, Hai-Xin Chen, Dao-Qiong Zheng Antonie van Leeuwenhoek.2024;[Epub] CrossRef -
Methylomonas rivi sp. nov., Methylomonas rosea sp. nov., Methylomonas aurea sp. nov. and Methylomonas subterranea sp. nov., type I methane-oxidizing bacteria isolated from a freshwater creek and the deep terrestrial subsurface
Christopher A. Abin, Christopher T. Garner, Krithivasan Sankaranarayanan, Reid A. Sindelar, Kyrah F. Kotary, Rosa M. Garner, Samantha C. Barclay, Haiyuan Cai, Paul A. Lawson, Lee R. Krumholz
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Phylogenomic discernments into Anaerolineaceae thermal adaptations and the proposal of a candidate genus Mesolinea
Katherine Bedoya-Urrego, Juan F. Alzate Frontiers in Microbiology.2024;[Epub] CrossRef - Unraveling the genomic secrets of Tritonibacter mobilis AK171: a plant growth-promoting bacterium isolated from Avicennia marina
Amal Khalaf Alghamdi, Sabiha Parween, Heribert Hirt, Maged M. Saad BMC Genomics.2024;[Epub] CrossRef - Ochrobactrum chromiisoli sp. nov., Isolated from Chromium-Contaminated Soil
Yi Yang, Zhe Xu, Li Yang, Meng-yao Hu, Guang-yang Jiang, Jia Chen, Yi-chen Yang, Yongqiang Tian Current Microbiology.2024;[Epub] CrossRef -
Spartinivicinus poritis sp. nov., a red pigment-producing bacterium isolated from a scleractinian coral Porites lutea
Sumbal Sajid, Guoqiang Zhang, Zongyao Zhang, Yishan Lu, Lianguo Chen, Lin Cai
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Tardiphaga alba sp. nov., a heavy-metal-tolerant bacterium isolated from garden soil
Zhihua Bao, Chaojun Wang, Jiahui Cao, Tingting Zhang, Yong Guo, Yoshinori Sato, Tomoyasu Nishizawa, Hiroyuki Ohta
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments
Yue Zheng, Baozhan Wang, Ping Gao, Yiyan Yang, Bu Xu, Xiaoquan Su, Daliang Ning, Qing Tao, Qian Li, Feng Zhao, Dazhi Wang, Yao Zhang, Meng Li, Mari-K H Winkler, Anitra E Ingalls, Jizhong Zhou, Chuanlun Zhang, David A Stahl, Jiandong Jiang, Willm Martens-H The ISME Journal.2024;[Epub] CrossRef - Refining the taxonomy of the order Hyphomicrobiales (Rhizobiales) based on whole genome comparisons of over 130 type strains
George C. diCenzo, Yuqi Yang, J. Peter W. Young, Nemanja Kuzmanović
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef -
Luteimonas flava sp. nov. and Aquilutibacter rugosus gen. nov., sp. nov., isolated from freshwater environments in China and re-examining the taxonomic status of genera Luteimonas and Lysobacter
Huibin Lu, Li Chen, Yujing Wang, Peng Xing, Qinglong Wu
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Novel taxonomic and functional diversity of eight bacteria from the upper digestive tract of chicken
Bibiana Rios-Galicia, Johan S. Sáenz, Timur Yergaliyev, Christoph Roth, Amélia Camarinha-Silva, Jana Seifert
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Parendozoicomonas callyspongiae sp. nov. Isolated from a Marine Sponge, Callyspongia elongate, and Reclassification of Sansalvadorimonas verongulae as Parendozoicomonas verongulae comb. nov.
Soo-Bin Kim, Kyung Hyun Kim, Jin-Sook Park Current Microbiology.2024;[Epub] CrossRef -
Novel phage infecting the
Roseobacter
CHUG lineage reveals a diverse and globally distributed phage family
Zuqing Wu, Luyuan Guo, Ying Wu, Mingyu Yang, Sen Du, Jiabing Shao, Zefeng Zhang, Yanlin Zhao, Michael J. Imperiale mSphere.2024;[Epub] CrossRef - Biochip-Based Identification of Mycobacterial Species in Russia
Danila Zimenkov, Vyacheslav Zhuravlev, Anastasia Ushtanit, Marina Filippova, Uliana Semenova, Natalia Solovieva, Maria Sviridenko, Anastasia Khakhalina, Svetlana Safonova, Marina Makarova, Elizaveta Gordeeva, Elena Guselnikova, Yakov Schwartz, Natalia Sta International Journal of Molecular Sciences.2024; 25(23): 13200. CrossRef -
Leptothrix ochracea
genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon
Gracee K. Tothero, Rene L. Hoover, Ibrahim F. Farag, Daniel I. Kaplan, Pamela Weisenhorn, David Emerson, Clara S. Chan, Arpita Bose Applied and Environmental Microbiology.2024;[Epub] CrossRef -
Svornostia abyssi gen. nov., sp. nov. isolated from the world’s deepest silver–uranium mine currently devoted to the extraction of radon-saturated water
Gabriela Kapinusova, Jachym Suman, Michal Strejcek, Petr Pajer, Tomas Cajthaml, Pavel Ulbrich, Meina Neumann-Schaal, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria
Wouter B. Lenferink, Theo A. van Alen, Mike S. M. Jetten, Huub J. M. Op den Camp, Maartje A. H. J. van Kessel, Sebastian Lücker Antonie van Leeuwenhoek.2024;[Epub] CrossRef - Genome streamlining in Parcubacteria transitioning from soil to groundwater
Narendrakumar M. Chaudhari, Olga M. Pérez-Carrascal, Will A. Overholt, Kai U. Totsche, Kirsten Küsel Environmental Microbiome.2024;[Epub] CrossRef - Sulfurospirillum diekertiae sp. nov., a tetrachloroethene-respiring bacterium isolated from contaminated soil
Huijuan Jin, Leitao Huo, Yi Yang, Yan Lv, Jingjing Wang, Julien Maillard, Christof Holliger, Frank E. Löffler, Jun Yan
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Pseudocalidococcus azoricus gen. sp. nov. (Thermosynechococcaceae, Cyanobacteria), a Rare but Widely Distributed Coccoid Cyanobacteria
Rúben Luz, Rita Cordeiro, Jan Kaštovský, Amélia Fonseca, Ralph Urbatzka, Vitor Vasconcelos, Vítor Gonçalves Diversity.2023; 15(12): 1157. CrossRef - The identification of the new species Nitratireductor thuwali sp. nov. reveals the untapped diversity of hydrocarbon-degrading culturable bacteria from the arid mangrove sediments of the Red Sea
Ramona Marasco, Grégoire Michoud, Fatmah O. Sefrji, Marco Fusi, Chakkiath P. Antony, Kholoud A. Seferji, Alan Barozzi, Giuseppe Merlino, Daniele Daffonchio Frontiers in Microbiology.2023;[Epub] CrossRef -
Danxiaibacter flavus gen. nov., sp. nov., a novel bacterium of the family Chitinophagaceae isolated from forest soil on Danxia Mountain
Zhuo-Huan Zheng, Chun-Yan Lu, Wen-Hui Lian, Jia-Rui Han, Fang Chen, Ting Zhou, Shuai Li, Lei Dong, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Metabolic profiling of petroleum-degrading microbial communities incubated under high-pressure conditions
Jinbo Xu, Lu Wang, Weifeng Lv, Xinmin Song, Yong Nie, Xiao-Lei Wu Frontiers in Microbiology.2023;[Epub] CrossRef - Comparative Genomics Reveal the High Conservation and Scarce Distribution of Nitrogen Fixation nif Genes in the Plant-Associated Genus Herbaspirillum
Ana Marina Pedrolo, Filipe Pereira Matteoli, Cláudio Roberto Fônseca Sousa Soares, Ana Carolina Maisonnave Arisi Microbial Ecology.2023; 86(1): 563. CrossRef - UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction
Seong-In Na, Michael James Bailey, Mauricio Chalita, Jae Hyoung Cho, Jongsik Chun Journal of Microbiology.2023; 61(7): 683. CrossRef -
Alkalicoccobacillus porphyridii sp. nov., isolated from a marine red alga, reclassification of Shouchella plakortidis and Shouchella gibsonii as Alkalicoccobacillus plakortidis comb. nov. and Alkalicoccobacillus gibsonii comb. nov., and emend
Kyung Hyun Kim, Dong Min Han, Jae Kyeong Lee, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Phocaeicola oris sp. nov., an anaerobic bacterium isolated from the saliva of a patient with oral squamous cell carcinoma
Jiung-Wen Chen, Chao-Jen Shih, Li-Wha Wu, Yen-Chi Wu, Wei-Fan Chiang, Yuh-Ling Chen, Jer-Horng Wu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Methylacidiphilum caldifontis gen. nov., sp. nov., a thermoacidophilic methane-oxidizing bacterium from an acidic geothermal environment, and descriptions of the family Methylacidiphilaceae fam. nov. and order Methylacidiphilales ord. nov.
Samuel Imisi Awala, Joo-Han Gwak, Yongman Kim, Chanmee Seo, Andrea Strazzulli, Song-Gun Kim, Sung-Keun Rhee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Genome-based classification of the class Halobacteria and description of Haladaptataceae fam. nov. and Halorubellaceae fam. nov
Can Cui, Dong Han, Jing Hou, Heng-Lin Cui
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Complete genome sequence analysis of plant growth-promoting bacterium, Isoptericola sp. AK164 isolated from the rhizosphere of Avicennia marina growing at the Red Sea coast
Amal Khalaf Alghamdi, Sabiha Parween, Heribert Hirt, Maged M. Saad Archives of Microbiology.2023;[Epub] CrossRef - Draft genome sequence of Hahella sp. CR1 and its ability in producing cellulases for saccharifying agricultural biomass
Melvin Chun Yun Tan, Muhammad Ramziuddin Zakaria, Kok Jun Liew, Chun Shiong Chong Archives of Microbiology.2023;[Epub] CrossRef - Sedimenticola hydrogenitrophicus sp. nov. a chemolithoautotrophic bacterium isolated from a terrestrial mud volcano, and proposal of Sedimenticolaceae fam. nov. in the order Chromatiales
Galina Slobodkina, Alexander Merkel, Nataliya Ratnikova, Alexandra Kuchierskaya, Alexander Slobodkin Systematic and Applied Microbiology.2023; 46(5): 126451. CrossRef - Comparative genomic assessment of members of genus Tenacibaculum: an exploratory study
Rohit Satyam, Shaban Ahmad, Khalid Raza Molecular Genetics and Genomics.2023; 298(5): 979. CrossRef - Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species
Mina Bizic, Traian Brad, Danny Ionescu, Lucian Barbu-Tudoran, Luca Zoccarato, Joost W Aerts, Paul-Emile Contarini, Olivier Gros, Jean-Marie Volland, Radu Popa, Jessica Ody, Daniel Vellone, Jean-François Flot, Scott Tighe, Serban M Sarbu The ISME Journal.2023; 17(3): 340. CrossRef -
Solicola gregarius gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with Micrococcus luteus culture supernatant
Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Alena Filipova, Petr Pajer, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Microbial Niche Differentiation during Nitrite-Dependent Anaerobic Methane Oxidation
Wen-Bo Nie, Guo-Jun Xie, Xin Tan, Jie Ding, Yang Lu, Yi Chen, Chun Yang, Qiang He, Bing-Feng Liu, Defeng Xing, Nanqi Ren Environmental Science & Technology.2023; 57(17): 7029. CrossRef -
Allocoprobacillus halotolerans gen. nov., sp. nov and Coprobacter tertius sp. nov., isolated from human gut microbiota
Nancy M. Y. Teng, Raymond Kiu, Rhiannon Evans, David J. Baker, Christian Zenner, Stephen D. Robinson, Lindsay J. Hall
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Aridibaculum aurantiacum gen. nov., sp. nov., isolated from the Kumtag Desert soil
Lei Dong, Shuai Li, Guo-Yuan Shi, Jia-Rui Han, Chun-Yan Lu, Wen-Hui Lian, Ling-Xiang Yue, Dalal Hussien M. Alkhalifah, Wael N. Hozzein, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Acidaminococcus homini s sp. nov., Amedibacillus hominis sp. nov., Lientehia hominis gen. nov. sp. nov., Merdimmobilis hominis gen. nov. sp. nov., and Paraeggerthella hominis sp. nov., isolated from human faeces
Rashidin Abdugheni, Dan-Hua Li, Yu-Jing Wang, Meng-Xuan Du, Nan Zhou, Chang Liu, Shuang-Jiang Liu International Journal of Systematic and Evolutionary Microbiology.2023;[Epub] CrossRef -
Vogesella aquatica sp. nov. and Vogesella margarita sp. nov., isolated from rivers in Southwest China
Huibin Lu, Li Chen, Lingyang Kong, Linpei Huang, Guangjie Chen
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Dermatobacter hominis gen. nov., sp. nov., a new member of the family Iamiaceae, revealed the potential utilisation of skin-derived metabolites
HyungWoo Jo, Chaeyun Baek, Young Mok Heo, Hye-Been Kim, Haeun Lee, Seunghyun Kang, Seyoung Mun, Yunseok Oh, Doyeong Ko, Kyudong Han, Raúl Riesco, Martha E. Trujillo, Dong-Geol Lee Antonie van Leeuwenhoek.2023; 116(11): 1139. CrossRef - Dynamic Development of Viral and Bacterial Diversity during Grass Silage Preservation
Johan S. Sáenz, Bibiana Rios-Galicia, Bianca Rehkugler, Jana Seifert Viruses.2023; 15(4): 951. CrossRef -
Alteromonas gilva sp. nov. and Erythrobacter fulvus sp. nov., isolated from a tidal mudflat
Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Two novel alkalitolerant species Pseudalkalibacillus spartinae sp. nov. and Pseudalkalibacillus sedimenti sp. nov.
Guo-Hong Liu, Shuang Han, Bing Li, Rui-Li Li, Huai Shi, Qian-Qian Chen, Hend A. Alwathnani, Christopher Rensing, Shun-Gui Zhou
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Brachybacterium sillae sp. nov., a thermophilic bacterium isolated from a hot spring
Dariimaa Ganbat, DoKyung Oh, Yong-Jik Lee, Dong-Woo Lee, Seong-Bo Kim, Won-Jae Chi, Ki-Eun Lee, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee Antonie van Leeuwenhoek.2023; 116(8): 791. CrossRef -
Bacillus mexicanus sp. nov., a biological control bacterium isolated from the common bean (Phaseolus vulgaris L.) crop in Sinaloa, Mexico
Sergio de los Santos Villalobos, Carmen María Félix Pablos, Valeria Valenzuela Ruiz, Fannie I. Parra Cota
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Genome-centric metagenomic insights into the role of Chloroflexi in anammox, activated sludge and methanogenic reactors
Patricia Bovio-Winkler, Leandro D. Guerrero, Leonardo Erijman, Pía Oyarzúa, María Eugenia Suárez-Ojeda, Angela Cabezas, Claudia Etchebehere BMC Microbiology.2023;[Epub] CrossRef - Potential for homoacetogenesis via the Wood–Ljungdahl pathway in Korarchaeia lineages from marine hydrothermal vents
Francesca Vulcano, Petra Hribovšek, Emily Olesin Denny, Ida H. Steen, Runar Stokke Environmental Microbiology Reports.2023; 15(6): 698. CrossRef - Isolation and characterisation of novel Methanocorpusculum species indicates the genus is ancestrally host-associated
James G. Volmer, Rochelle M. Soo, Paul N. Evans, Emily C. Hoedt, Ana L. Astorga Alsina, Benjamin J. Woodcroft, Gene W. Tyson, Philip Hugenholtz, Mark Morrison BMC Biology.2023;[Epub] CrossRef -
Thermomonas mangrovi sp. nov., isolated from soil of a mangrove nature reserve
Shanshan Xu, Junpeng Chen, Si Chen, Qiliang Lai, Zengzhi Liu, Ying Xu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Proposal to transfer Bacillus massiliigorillae to the genus Peribacillus as Peribacillus massiliigorillae comb. nov., and Bacillus sinesaloumensis to the genus Ferdinandcohnia as Ferdinandcohnia sinesaloumensis comb. nov
Awalagaway Dhulappa, Manik Prabhu Narsing Rao, Haijie Wang, Bhagwan Narayan Rekadwad, Ying-Qian Kang Archives of Microbiology.2023;[Epub] CrossRef - Characterization and Antioxidant Activity of Exopolysaccharides Produced by Lysobacter soyae sp. nov Isolated from the Root of Glycine max L.
Inhyup Kim, Geeta Chhetri, Yoonseop So, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo Microorganisms.2023; 11(8): 1900. CrossRef - Leucobacter edaphi sp. nov., a highly chromate-tolerant bacterium isolated from chromium containing chemical plant soil
Bijun Zheng, Zhe Xu, Li Yang, Guangyang Jiang, Jia Chen, Yichen Yang, Yongqiang Tian Antonie van Leeuwenhoek.2023; 116(12): 1433. CrossRef -
Roseateles albus sp. nov., Roseateles koreensis sp. nov. and Janthinobacterium fluminis sp. nov., isolated from freshwater at Jucheon River, and emended description of Roseateles aquaticus comb. nov.
Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Isolation and Genomic Analysis of 3-Chlorobenzoate-Degrading Bacteria from Soil
Ifat Ara, Ryota Moriuchi, Hideo Dohra, Kazuhide Kimbara, Naoto Ogawa, Masaki Shintani Microorganisms.2023; 11(7): 1684. CrossRef - Brytella acorum gen. nov., sp. nov., a novel acetic acid bacterium from sour beverages
Atena Sadat Sombolestani, Dries Bongaerts, Eliza Depoorter, Ilse Cleenwerck, Anneleen D. Wieme, Scott J. Britton, Stefan Weckx, Luc De Vuyst, Peter Vandamme Systematic and Applied Microbiology.2023; 46(5): 126440. CrossRef - Complete genome sequence of Vibrio gazogenes PB1: an estuarine bacterium capable of producing prodigiosin from starch or cellulose
Bincy Baby, Dhanya Vijay, Pretty S. Philip, Afra A. Alnuaimi, Hessa M. Almansoori, Sarah O. Areidat, Gulfaraz Khan, Ranjit Vijayan, M. Kalim Akhtar Frontiers in Marine Science.2023;[Epub] CrossRef -
Tianweitania aestuarii sp. nov., isolated from a coastal dune, reclassification of Corticibacterium populi as Tianweitania populi comb. nov., and emended description of the genus Tianweitania
Ji Hyeon Song, Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Fluviispira vulneris sp. nov., isolated from human wound secretions
Peijuan Tang, Na Peng, Pengwen Ouyang, Sheng Long, Zhenhua Wei, Xingchun Chen, Pinghua Qu, Liangyi Xie Antonie van Leeuwenhoek.2023; 116(12): 1305. CrossRef -
Neorhizobium turbinariae sp. nov., a coral-beneficial bacterium isolated from Turbinaria peltata
Hao Sun, Zhiyuan Miao, Shuai Liu, Xuerui Liu, Bogui Chen, Baolin Liao, Baohua Xiao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Salinimicrobium tongyeongense sp. nov., isolated from seawater
Dariimaa Ganbat, Dong-Woo Lee, Seong-Bo Kim, Yong-Jik Lee, Gaewon Nam, Won-Jae Chi, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Genomic analysis and characterization of phages infecting the marine Roseobacter CHAB-I-5 lineage reveal a globally distributed and abundant phage genus
Zefeng Zhang, Zuqing Wu, He Liu, Mingyu Yang, Rui Wang, Yanlin Zhao, Feng Chen Frontiers in Microbiology.2023;[Epub] CrossRef - PhaGAA: an integrated web server platform for phage genome annotation and analysis
Jiawei Wu, Qingrui Liu, Min Li, Jiliang Xu, Chen Wang, Junyin Zhang, Minfeng Xiao, Yannan Bin, Junfeng Xia, Can Alkan Bioinformatics.2023;[Epub] CrossRef - Comparative Genomics Reveals Three Genetic Groups of the Whitefly Obligate Endosymbiont Candidatus Portiera aleyrodidarum
Teng Lei, Ning Luo, Chao Song, Junwei Yu, Yuhang Zhou, Xin Qi, Yinquan Liu Insects.2023; 14(11): 888. CrossRef -
Roseobacter insulae sp. nov. and Loktanella gaetbuli sp. nov., isolated from tidal flats in the Yellow Sea in Korea
Eun Bee Lee, Sooyeon Park, Wonyong Kim, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Novosphingobium mangrovi sp. nov., isolated from mangrove sediment
Qian Huang, Zhihui Qian, Tao Peng, Jin Li, Xueying Ye, Tongwang Huang, Zhong Hu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Phylotaxonomic assessment based on four core gene sets and proposal of a genus definition among the families Paracoccaceae and Roseobacteraceae
Dao-Feng Zhang, Wei He, Zongze Shao, Iftikhar Ahmed, Yuqin Zhang, Wen-Jun Li, Zhe Zhao
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil
Sophie Mieszkin, Blandine Trouche, Julien Ancousture, Youssef Raouf, Stéphane Uroz, Karine Alain
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Comammox
Nitrospira
and Ammonia-Oxidizing Archaea Are Dominant Ammonia Oxidizers in Sediments of an Acid Mine Lake Containing High Ammonium Concentrations
Deyong Li, Zhichang Ren, Yangqi Zhou, Lugao Jiang, Min Zheng, Guoqiang Liu, Jennifer B. Glass Applied and Environmental Microbiology.2023;[Epub] CrossRef - Citrobacter sp. Y3 harbouring novel gene HBCD-hd-1 mineralizes hexabromocyclododecane via new metabolic pathways according to multi-omics characterization
Xingxing Peng, Tianyu Li, Qihang Zheng, Yingyuan Lu, Yuzhe He, Yetao Tang, Rongliang Qiu Journal of Hazardous Materials.2023; 442: 130071. CrossRef -
Opacimonas viscosa gen. nov., sp. nov., a novel bacterium isolated from phycosphere
Xuanru Lin, Runlin Cai, Guanjing Cai, Jianmin Xie, Zhenyuan Zhou, Hui Wang
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Description of Microbacterium neungamense sp. nov. isolated from a hot spring
Dariimaa Ganbat, Ga Eul Jeong, DoKyung Oh, Dong-Woo Lee, Yong-Jik Lee, Seong-Bo Kim, In-Tae Cha, Won-Jae Chi, Seul-Ki Park, Jung-Sook Lee, Sang-Jae Lee Archives of Microbiology.2023;[Epub] CrossRef - Habitat distribution of the genus Belliella in continental waters and the description of Belliella alkalica sp. nov., Belliella calami sp. nov. and Belliella filtrata sp. nov.
Kristóf Korponai, Sára Szuróczki, Zsuzsanna Márton, Attila Szabó, Paula V. Morais, Diogo Neves Proença, Erika Tóth, Emil Boros, Károly Márialigeti, Tamás Felföldi
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Molecular Characterization of Indigenous Rhizobia from Kenyan Soils Nodulating with Common Beans
Clabe Wekesa, Kelvin Kiprotich, Patrick Okoth, George O. Asudi, John O. Muoma, Alexandra C. U. Furch, Ralf Oelmüller International Journal of Molecular Sciences.2023; 24(11): 9509. CrossRef - Putative novel hydrogen- and iron-oxidizing sheath-producing Zetaproteobacteria thrive at the Fåvne deep-sea hydrothermal vent field
Petra Hribovšek, Emily Olesin Denny, Håkon Dahle, Achim Mall, Thomas Øfstegaard Viflot, Chanakan Boonnawa, Eoghan P. Reeves, Ida Helene Steen, Runar Stokke, Michael S. Rappe mSystems.2023;[Epub] CrossRef - Thiovibrio frasassiensis gen. nov., sp. nov., an autotrophic, elemental sulphur disproportionating bacterium isolated from sulphidic karst sediment, and proposal of Thiovibrionaceae fam. nov.
Heidi S. Aronson, Cais Thomas, Maia K. Bhattacharyya, Shaan R. Eckstein, Sophia R. Jensen, Roman A. Barco, Jennifer L. Macalady, Jan P. Amend
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Hufsiella ginkgonis gen. nov., sp. nov. and Hufsiella arboris sp. nov., isolated from tree barks
Heeyoung Kang, Seokhyeon Bae, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Phenotypic and genomic characterization of the first alkaliphilic aceticlastic methanogens and proposal of a novel genus Methanocrinis gen.nov. within the family Methanotrichaceae
Maria A. Khomyakova, Alexander Y. Merkel, Alexander I. Slobodkin, Dimitry Y. Sorokin Frontiers in Microbiology.2023;[Epub] CrossRef - Description of Xanthocytophaga agilis sp. nov. and Xanthocytophaga flavus sp. nov. of the new genus Xanthocytophaga gen. nov and the proposal of Rhodocytophagaceae fam. nov. within the order Cytophagales
Xianjiao Zhang, Guang-Da Feng, Yang Liu, Fan Yang, Yanxuan Li, Xiaoqin Deng, Honghui Zhu, Qing Yao Archives of Microbiology.2023;[Epub] CrossRef - Draft genome sequence of Joostella atrarenae M1-2T with cellulolytic and hemicellulolytic ability
Kok Jun Liew, Muhammad Ramziuddin Zakaria, Clarine Wan Ling Hong, Melvin Chun Yun Tan, Chun Shiong Chong 3 Biotech.2023;[Epub] CrossRef - Transcriptional Landscapes of Herelleviridae Bacteriophages and Staphylococcus aureus during Phage Infection: An Overview
Maria Kornienko, Dmitry Bespiatykh, Roman Gorodnichev, Narina Abdraimova, Egor Shitikov Viruses.2023; 15(7): 1427. CrossRef -
Tenacibaculum tangerinum sp. nov., isolated from a tidal flat sediment
Sang Hyun Lee, Yeonjae Yoo, Dae Young Kwon, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Jae-Jin Kim
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Mesonia aestuariivivens sp. nov., isolated from a tidal flat
Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon Archives of Microbiology.2022;[Epub] CrossRef - Metabacillus rhizolycopersici sp. nov., Isolated from the Rhizosphere Soil of Tomato Plants
Rong Ma, Shan-Wen He, Xing Wang, Kyu Kyu Thin, Ji-Gang Han, Xiao-Xia Zhang Current Microbiology.2022;[Epub] CrossRef - Longitalea arenae gen. nov., sp. nov. and Longitalea luteola sp. nov., two new members of the family Chitinophagaceae isolated from desert soil
Shuai Li, Lei Dong, Jia-Rui Han, Guo-Yuan Shi, Chun-Yan Lu, Lu Xu, Wen-Hui Lian, Dalal Hussien M. Alkhalifah, Wael N. Hozzein, Wen-Jun Li Archives of Microbiology.2022;[Epub] CrossRef - Description of Deefgea piscis sp. nov., and Deefgea tanakiae sp. nov., isolated from the gut of Korean indigenous fish
Do-Hun Gim, So-Yeon Lee, Jeong Eun Han, Jae-Yun Lee, Seo Min Kang, Jin-Woo Bae Journal of Microbiology.2022; 60(11): 1061. CrossRef -
Fibrella aquatilis sp. nov., Fibrella rubiginis sp. nov. and Fibrella forsythiae sp. nov., isolated from freshwater, rusty iron and forsythia flower
Heeyoung Kang, Haneul Kim, Seokhyeon Bae, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Pedomonas mirosovicensis gen. nov., sp. nov., a bacterium isolated from soil with the aid of Micrococcus luteus culture supernatant containing resuscitation-promoting factor
Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Petr Pajer, Jacqueline Wolf, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Psychroflexus curvus sp. nov., Psychroflexus longus sp. nov. and Psychroflexus montanilacus sp. nov., isolated from salt lakes on the Tibetan Plateau
Huibin Lu, Peixin Gao, Dorji Phurbu, Qinglong Wu, Peng Xing
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
(Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed
Gemmatimonadota
Xiaowei Zheng, Xin Dai, Yaxin Zhu, Jian Yang, Hongchen Jiang, Hailiang Dong, Li Huang, Steven J. Hallam mSystems.2022;[Epub] CrossRef - Complete Genome Sequence of Weissella cibaria NH9449 and Comprehensive Comparative-Genomic Analysis: Genomic Diversity and Versatility Trait Revealed
Komwit Surachat, Duangporn Kantachote, Monwadee Wonglapsuwan, Arnon Chukamnerd, Panchalika Deachamag, Pimonsri Mittraparp-arthorn, Kongpop Jeenkeawpiam Frontiers in Microbiology.2022;[Epub] CrossRef - Sulfuricystis multivorans gen. nov., sp. nov. and Sulfuricystis thermophila sp. nov., facultatively autotropic sulfur-oxidizing bacteria isolated from a hot spring, and emended description of the genus Rugosibacter
Hisaya Kojima, Miho Watanabe, Naoyuki Miyata, Manabu Fukui Archives of Microbiology.2022;[Epub] CrossRef - Draft genome sequence of Thermovorax subterraneus 70BT, a thermophile isolated from a geothermally active underground mine that produces hydrogen
Kian Mau Goh, Kok Jun Liew, Saleha Shahar, Iffah Izzati Zakaria, Ummirul Mukminin Kahar Data in Brief.2022; 45: 108695. CrossRef - Consumption of N2O by Flavobacterium azooxidireducens sp. nov. Isolated from Decomposing Leaf Litter of Phragmites australis (Cav.)
Undine Behrendt, Tobias Spanner, Jürgen Augustin, Dominik H. Zak, Marcus A. Horn, Steffen Kolb, Andreas Ulrich Microorganisms.2022; 10(11): 2304. CrossRef - Citrobacter Sp. Y3 Harboring a Novel Gene Hbcd-Hd-1 Mineralizes Hexabromocyclododecane (Hbcd) with New Metabolic Pathways Based on Multi-Omics Characterization
Xingxing Peng, Tianyu Li, Qihang Zheng, Yingyuan Lu, Yuzhe He, Yetao Tang, Rongliang Qiu SSRN Electronic Journal.2022;[Epub] CrossRef -
Neokomagataea anthophila sp. nov., an osmotolerant acetic acid bacterium isolated in Thailand and emended description of the genus Neokomagataea
Piyanat Charoenyingcharoen, Pattaraporn Yukphan, Sukunphat Malimas, Somsak Likhitrattanapisal, Somboon Tanasupawat, Yuzo Yamada
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae Journal of Microbiology.2022; 60(9): 890. CrossRef - Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities
Andrew Keith Watson, Bernhard Kepplinger, Sahar Mubarak Bakhiet, Najwa Adam Mhmoud, Jonathan Chapman, Nick EE Allenby, Katarzyna Mickiewicz, Michael Goodfellow, Ahmed Hassan Fahal, Jeff Errington, David John Chandler PLOS Neglected Tropical Diseases.2022; 16(7): e0010128. CrossRef - Insights into ecological roles of uncultivated bacteria in Katase hot spring sediment from long-read metagenomics
Shingo Kato, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Moriya Ohkuma Frontiers in Microbiology.2022;[Epub] CrossRef -
Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov. sp. nov., Bombilactobacillus folatiphilus sp. nov. and Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid bacterial isolates from stingless bees Tetragonula ca
Scott A. Oliphant, Nathan S. Watson-Haigh, Krista M. Sumby, Jennifer Gardner, Scott Groom, Vladimir Jiranek
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Description of Prasinibacter corallicola gen. nov., sp. nov., a zeaxanthin-producing bacterium isolated from stony coral Porites lutea
Guanghua Wang, Jianfeng Liu, Yuanjin Li, Jin Li, Jixin Luo, Biao Chen, Zhiheng Liao, Hongfei Su, Jiayuan Liang, Kefu Yu Antonie van Leeuwenhoek.2022; 115(7): 933. CrossRef -
Faunimonas pinastri gen. nov., sp. nov., an endophyte from a pine tree of the family Pleomorphomonadaceae, class Alphaproteobacteria
Diogo N. Proença, William B. Whitman, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides, Paula V. Morais
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Physiological and genomic characterisation of Luteimonas fraxinea sp. nov., a bacterial species associated with trees tolerant to ash dieback
Kristina Ulrich, Regina Becker, Undine Behrendt, Michael Kube, Volker Schneck, Andreas Ulrich Systematic and Applied Microbiology.2022; 45(4): 126333. CrossRef - Neglectibacter timonensis gen. nov., sp. nov. and Scatolibacter rhodanostii gen. nov., sp. nov., two anaerobic bacteria isolated from human stool samples
Rita Zgheib, Ahmad Ibrahim, Hussein Anani, Sokhna Ndongo, Melhem Bilen, Nicholas Armstrong, Magali Richez, Didier Raoult, Pierre-Edouard Fournier Archives of Microbiology.2022;[Epub] CrossRef - A stable home for an equine pathogen: valid publication of the binomial Prescottella equi gen. nov., comb. nov., and reclassification of four rhodococcal species into the genus Prescottella.
Vartul Sangal, Michael Goodfellow, Amanda L. Jones, Iain C. Sutcliffe
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Devosia ureilytica sp. nov., isolated from Kuche River in China
Bin-Bin Li, Xiao-Juan Zhang, Danni Wu, Dan-Dan Zhang, Bao-Zhu Fang, Hong-Can Liu, Yu-Guang Zhou, Man Cai, Wen-Jun Li, Guo-Xing Nie
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Sphingomonas arenae sp. nov., isolated from desert soil
Lei Dong, Shuai Li, Wen-Hui Lian, Qi-Chuang Wei, Osama Abdalla Abdelshafy Mohamad, Wael N. Hozzein, Iftikhar Ahmed, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Prokaryotes of renowned Karlovy Vary (Carlsbad) thermal springs: phylogenetic and cultivation analysis
Tereza Smrhova, Kunal Jani, Petr Pajer, Gabriela Kapinusova, Tomas Vylita, Jachym Suman, Michal Strejcek, Ondrej Uhlik Environmental Microbiome.2022;[Epub] CrossRef - Dongia deserti sp. nov., Isolated from the Gurbantunggut Desert Soil
Chun-Yan Lu, Lei Dong, Dong Wang, Shuai Li, Bao-Zhu Fang, Ming-Xian Han, Feng Liu, Hong-Chen Jiang, Iftikhar Ahmed, Wen-Jun Li Current Microbiology.2022;[Epub] CrossRef - Cell Wall Glycopolymers as a Diagnostic Trait of Arthrobacter crystallopoietes
N. V. Potekhina, E. V. Ariskina, A. S. Shashkov, T. M. Tul’skaya, L. I. Evtushenko Microbiology.2022; 91(3): 259. CrossRef - Variovorax terrae sp. nov. Isolated from Soil with Potential Antioxidant Activity
Chae Yung Woo, Jaisoo Kim Journal of Microbiology and Biotechnology.2022; 32(7): 855. CrossRef -
Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma
Ji-Ho Yoo, Jeong Eun Han, June-Young Lee, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Hojun Sung, Euon Jung Tak, Hyun Sik Kim, Pil Soo Kim, Jee-Won Choi, Do-Yeon Kim, In Chul Jeong, Do-Hun Gim, Seo Min Kang, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Algiphilus acroporae sp. nov. and Coraliihabitans acroporae gen. nov. sp. nov., isolated from scleractinian coral Acropora digitifera
Hao Sun, Huina Zheng, Baolin Liao, Bogui Chen, Aihua Li, Baohua Xiao
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Comparative Genomics Reveal the Animal-Associated Features of the Acanthopleuribacteraceae Bacteria, and Description of Sulfidibacter corallicola gen. nov., sp., nov.
Guanghua Wang, Yuanjin Li, Jianfeng Liu, Biao Chen, Hongfei Su, Jiayuan Liang, Wen Huang, Kefu Yu Frontiers in Microbiology.2022;[Epub] CrossRef - Oceanobacillus alkalisoli sp. nov., an alkaliphilic bacterium isolated from saline-alkaline soil
Pin-Jiao Jin, Lei Sun, Manik Prabhu Narsing Rao, Jian-Yu Jiao, Xiu-Jun Sun, Wen-Jun Li, Shuang Wang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Sabulibacter ruber gen. nov., sp. nov., a novel bacterium in the family Hymenobacteraceae, isolated from desert soil
Wen-Hui Lian, Shuai Li, Zhi-Liang Lin, Jia-Rui Han, Osama Abdalla Abdelshafy Mohamad, Li Li, Ying Lin, Wael N. Hozzein, Lei Dong, Wen-Jun Li
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Sessilibacter corallicola gen. nov., sp. nov., a sessile bacterium isolated from coral Porites lutea
Jianfeng Liu, Jin Li, Jixin Luo, Yuanjin Li, Zian Yang, Chengli Huang, Feilong Sun, Guanghua Wang
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Genomic and physiological analysis of C50 carotenoid-producing novel Halorubrum ruber sp. nov.
Chi Young Hwang, Eui-Sang Cho, Won Jong Rhee, Eunjung Kim, Myung-Ji Seo Journal of Microbiology.2022; 60(10): 1007. CrossRef -
Novosphingobium percolationis sp. nov. and Novosphingobium huizhouense sp. nov., isolated from landfill leachate of a domestic waste treatment plant
Xiaoling He, Huibin Lu, Wenzhe Hu, Tongchu Deng, Xiaofan Gong, Xunan Yang, Da Song, Mei He, Meiying Xu
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Enterovibrio paralichthyis sp. nov., isolated from the gut of an olive flounder Paralichthys olivaceus
Young-Ok Kim, In-Suk Park, Dong-Gyun Kim, Sooyeon Park, Sung Hoon Han, Jung-Hoon Yoon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Desulfofustis limnaeus sp. nov., a freshwater sulfate-reducing bacterium isolated from marsh soil
Miho Watanabe, Ayaka Takahashi, Hisaya Kojima, Naoyuki Miyata, Manabu Fukui Archives of Microbiology.2022;[Epub] CrossRef - Taxogenomic status of phylogenetically distant Frankia clusters warrants their elevation to the rank of genus: A description of Protofrankia gen. nov., Parafrankia gen. nov., and Pseudofrankia gen. nov. as three novel genera within the family Frankiaceae
Maher Gtari Frontiers in Microbiology.2022;[Epub] CrossRef - Genomic and Physiological Characterization of Metabacillus flavus sp. nov., a Novel Carotenoid-Producing Bacilli Isolated from Korean Marine Mud
Chi Young Hwang, Eui-Sang Cho, Deok Jun Yoon, In-Tae Cha, Dong-Hyun Jung, Young-Do Nam, So-Lim Park, Seong-Il Lim, Myung-Ji Seo Microorganisms.2022; 10(5): 979. CrossRef -
Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn
Do-Yeon Kim, In-Chul Jeong, So-Yeon Lee, Yun-Seok Jeong, Jeong Eun Han, Euon Jung Tak, June-Young Lee, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds
So-Yeon Lee, Hojun Sung, Pil Soo Kim, Hyun Sik Kim, Jae-Yun Lee, June-Young Lee, Yun-Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong-Wook Hyun, Jin-Woo Bae Journal of Microbiology.2021; 59(11): 978. CrossRef - Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
Zaki Saati-Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García-Fraile Biology.2021; 10(8): 782. CrossRef -
Pseudomarimonas arenosa gen. nov., sp. nov. isolated from marine sand
Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Yangia mangrovi sp. nov., a novel member of the Roseobacter clade isolated from mangrove soil and emended description of Yangia pacifica Dai et al. 2006
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