- Flavisolibacter aluminii sp. nov., a novel member of the genus Flavisolibacter isolated from an automotive air conditioning system
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Hyosun Lee , Dong-Uk Kim , Suyeon Lee , Song-Gun Kim , A-Young Park , Jae-Hyung Ahn , Jong-Ok Ka
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J. Microbiol. 2019;57(1):18-22. Published online November 19, 2018
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DOI: https://doi.org/10.1007/s12275-019-8219-3
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A Gram-stain-negative, aerobic, non-motile, rod-shaped, and
yellow-pigmented bacterium, designated strain ID1709T, was
isolated from an automotive air conditioning system collected
in Korea. Analysis of 16S rRNA gene sequence similarity
showed that strain ID1709T had 92.2–94.3% similarities with
the type strains of members of the genus Flavisolibacter. The
major cellular fatty acids were iso-C15:0, iso-C15:1 G, iso-C17:0
3-OH, and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c). The
predominant respiratory quinone was MK-7. The polar lipids
comprised phosphatidylethanolamine, aminoglycophospholipid,
two unidentified aminolipids, and three unidentified
lipids. The DNA G + C content of the strain was 35.6 mol%.
Based on phenotypic, chemotaxonomic, and genotypic data,
strain ID1709T represents a novel species in the genus Flavisolibacter,
for which the name Flavisolibacter aluminii sp.
nov. (= KACC 19451T = KCTC 52778T = NBRC 112870T), is
proposed.
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Citations
Citations to this article as recorded by  - Validation List no. 229: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef - Insights into the Response and Evolution of Microbial Communities During Long-Term Natural Remediation of Contaminated Abandoned Shale Gas Wells
Hongyang Ren, Shuangli Chen, Jiajian Shang, Yujia Gao, Yuanpeng Deng, Zhaoyang Wang, Guojun Hu, Bing Wang
Water, Air, & Soil Pollution.2024;[Epub] CrossRef - Metallococcus carri gen. nov., sp. nov., a novel member of the family Dermacoccaceae isolated from an automotive air conditioning system
Jong Sung Lim, Hyosun Lee, Jigwan Son, Song-Gun Kim, Dong-Uk Kim, Jong-Ok Ka
Archives of Microbiology.2021; 203(7): 4073. CrossRef
- Tardibacter chloracetimidivorans gen. nov., sp. nov., a novel member of the family Sphingomonadaceae isolated from an agricultural soil from Jeju Island in Republic of Korea
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Hyosun Lee , Dong-Uk Kim , Sooyeon Park , Jung-Hoon Yoon , Jae-Hyung Ahn , Jong-Ok Ka
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J. Microbiol. 2018;56(5):324-330. Published online May 2, 2018
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DOI: https://doi.org/10.1007/s12275-018-7455-2
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882
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A pale yellow bacterial strain, designated JJ-A5T, was isolated
form an agricultural soil from Jeju Island in Republic of
Korea. Cells of the strain were Gram-stain-negative, motile,
flagellated and rod-shaped. The strain grew at 15–30°C, pH
6.0–9.0, and in the presence of 0–1.5% (w/v) NaCl. Growth
occurred on R2A, but not on Luria-Bertani agar, nutrient agar,
trypticase soy agar and MacConkey agar. The strain utilized
alachlor as a sole carbon source for growth. The strain JJ-A5T
showed 16S rRNA gene sequence similarities lower than
95.4% with members of the family Sphingomonadaceae. Phylogenetic
analysis showed that the strain belongs to the family
Sphingomonadaceae and strain JJ-A5T was distinctly separated
from established genera of this family. The strain contained
Q-10 as dominant ubiquinone and spermidine as major
polyamine. The predominant cellular fatty acids were
summed feature 8 (C18:1 ω7c and/or C18:1 ω6c), summed feature
3 (C16:1 ω7c and/or C16:1 ω6c), 11-methyl C18:1 ω7c, C16:0
and C14:0 2-OH. The major polar lipids were phosphatidylethanolamine,
phosphatidylglycerol, sphingoglycolipid, and
phosphatidylcholine. The DNA G + C content of the strain
was 62.7 mol%. On the basis of the phenotypic, genomic and
chemotaxonomic characteristics, strain JJ-A5T is considered
to represent a novel genus and species within the family
Sphingomonadaceae, for which the name Tardibacter chloracetimidivorans
gen. nov., sp. nov. is proposed. The type
strain of Tardibacter chloracetimidivorans is JJ-A5T (= KACC
19450T = NBRC 113160T).
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Citations
Citations to this article as recorded by - Interactive effects of maize straw incorporation and improved irrigation on soil physicochemical properties and microbial community structure in saline–alkaline soil
Wenbo Chai, Hanyuan Xu, Chao Yuan, Shufen Li, Hongtao Li, Qing Zhu, Wei Ji, Ming Chi, Jun Wang, Chongxing Xin
Frontiers in Microbiology.2026;[Epub] CrossRef - Removal of alachlor from the water/soil environments: The significance of microbial remediation and its biochemical mechanisms
Zeren Li, Mengyi Chen, Wen-Juan Chen, Mingqiu Liu, Guiling Si, Xixian Zhu, Kalpana Bhatt, Sandhya Mishra, Mohamed A. Ghorab, Shaohua Chen
Journal of Water Process Engineering.2024; 68: 106387. CrossRef - Processes governing the environmental fates of alachlor in soil and aqueous media: a critical review
M. U. Ghani, H. N. Asghar, H. Nadeem, M. Shahid, M. A. Zeshan, A. Niaz, S. Hussain, S. Hussain
International Journal of Environmental Science and Technology.2022; 19(8): 8043. CrossRef - New Associations of Aerobic Bacteria that Actively Decompose Lindane
E. A. Nazarova, D. O. Egorova, L. N. Anan’ina, E. S. Korsakova, E. G. Plotnikova
Applied Biochemistry and Microbiology.2021; 57(5): 643. CrossRef
- Spirosoma metallicus sp. nov., isolated from an automobile air conditioning system
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Hyosun Lee , Dong-Uk Kim , Suyeon Lee , Sooyeon Park , Jung-Hoon Yoon , So Yoon Park , Jong-Ok Ka
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J. Microbiol. 2017;55(9):673-677. Published online August 5, 2017
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DOI: https://doi.org/10.1007/s12275-017-7162-4
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962
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A Gram-stain-negative and orangish yellow-pigmented bacterial
strain, designated PR1014KT, was isolated from an automobile
evaporator core collected in Korea. Phylogenetic
analysis based on 16S rRNA gene sequences indicated that
strain PR1014KT was related with the members of the genus
Spirosoma (94.7–90.2%) and closely related with Spirosoma
lacussanchae CPCC 100624T (94.7%), Spirosoma knui 15J8-
12T (94.3%), and Spirosoma soli MIMBbqt12T (93.3%). The
strain grew at 15–40°C (optimum, 25°C), pH 6.5–7.0 (optimum,
6.5) and 0–1% (w/v) NaCl (optimum, 0%). The predominant
fatty acids were summed feature 3 (C16:1 ω7c and/or
C16:1 ω6c), C16:0, iso-C15:0, C16:1 ω5c, and iso-C17:0 3-OH. The
major menaquinone was MK-7. The polar lipid profile of the
strain indicated that the presence of one phosphatidylethanolamine,
one unidentified aminolipid, two unidentified
aminophospholipids, and three unidentified lipids. The DNA
G+C content of the strain was 47.4 mol%. On the basis of
the phenotypic, genotypic and chemotaxonomic characteristics,
strain PR1014KT represents a novel species in the genus
Spirosoma, for which the name Spirosoma metallicus
sp. nov. (=KACC 17940T =NBRC 110792T) is proposed.
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Citations
Citations to this article as recorded by -
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Spirosoma taeanense sp. nov., a radiation resistant bacterium isolated from a coastal sand dune
Ji Hee Lee, Jong-Hyun Jung, Min-Kyu Kim, Han Na Choe, Chi Nam Seong, Sangyong Lim
Antonie van Leeuwenhoek.2021; 114(2): 151. CrossRef - Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
Antonie van Leeuwenhoek.2019; 112(10): 1523. CrossRef -
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2018; 68(3): 693. CrossRef
- The effect of the cwf14 gene of fission yeast on cell wall integrity is associated with rho1
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Dong-Uk Kim , Shinae Maeng , Hyemi Lee , Miyoung Nam , Sook-Jeong Lee , Kwang-Lae Hoe
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J. Microbiol. 2016;54(2):98-105. Published online February 2, 2016
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DOI: https://doi.org/10.1007/s12275-016-5569-y
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953
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Abstract
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In all eukaryotic organisms, a wide range of morphologies
are responsible for critical cellular function and development.
In particular, the Rho GTPases, which are highly
conserved from yeast to mammals, are key molecules in signaling
pathways that control cell polarity processes and cell
wall biosynthesis, which are fundamental aspects of morphogenesis.
Therefore, using haploinsufficiency deletion mutants
of the fission yeast Schizosaccharomyces pombe, we screened
the slow-growing mutants and their morphogenesis, specifically
focusing on regulation of their Rho GTPases. Based
on this screening, we found that the cwf14 mutant of S. pombe
exhibited the slow growth and abnormal phenotypes with
an elongated cell shape and thicker cell wall when compared
with wild-type cells. In particular, cells with the cwf14 deletion
showed excessive Rho1 expression. However, the wildtype
strain with ectopically expressed Rho1 did not exhibited
any significant change in the level of cwf14, suggesting that
cwf14 may act on the upstream of Rho1. Furthermore, the
cells with a cwf14 deletion also have increased sensitivity to
β-glucanase, a cell wall-digesting enzyme, which is also seen
in Rho1-overexpressing cells. Overall, our results suggest that
the cwf14 plays a key role in fission yeast morphogenesis
and cell wall biosynthesis and/or degradation possibly via
the regulation of Rho1 expression.
-
Citations
Citations to this article as recorded by - The BUD31 Homologous Gene in Schizosaccharomyces pombe Is Evolutionarily Conserved and Can Be Linked to Cellular Processes Regulated by the TOR Pathway
Ildikó Vig, Lajos Acs-Szabo, Zsigmond Benkő, Silvia Bagelova Polakova, László Attila Papp, Juraj Gregan, Ida Miklós
Cells.2025; 14(21): 1736. CrossRef - Transcriptome of Nosema ceranae and Upregulated Microsporidia Genes during Its Infection of Western Honey Bee (Apis mellifera)
Yi-Hsuan Li, Zih-Ting Chang, Ming-Ren Yen, Yu-Feng Huang, Tzu-Han Chen, Ju-Chun Chang, Ming-Cheng Wu, Yu-Liang Yang, Yue-Wen Chen, Yu-Shin Nai
Insects.2022; 13(8): 716. CrossRef - Proteomic profiling and glycomic analysis of the yeast cell wall in strains with Aflatoxin B1 elimination ability
Beatriz García‐Béjar, Rebecca A. Owens, Ana Briones, María Arévalo‐Villena
Environmental Microbiology.2021; 23(9): 5305. CrossRef
- Pedobacter namyangjuensis sp. nov. Isolated from Soil and Reclassification of Nubsella zeaxanthinifaciens Asker et al. 2008 as Pedobacter zeaxanthinifaciens comb. nov.
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Dong-Uk Kim , Yoo-Jeong Kim , Dong-Hyeon Shin , Hang-Yeon Weon , Soon-Wo Kwon , Chi-Nam Seong , Jong-Ok Ka
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J. Microbiol. 2013;51(1):25-30. Published online March 2, 2013
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DOI: https://doi.org/10.1007/s12275-013-2231-9
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974
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18
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A Gram-stain-negative, non-motile, strictly aerobic, yellowpigmented bacterium, designated strain 5G38T, was isolated from a field cultivated with Chinese cabbage in Korea. The strain grew at 5–40°C and at pH 6.0–8.0. 16S rRNA gene sequence analysis revealed that strain 5G38T represented a distinct lineage within the family Sphingobacteriaceae and showed the highest 16S rRNA gene sequence similarity of 95.2% with Pedobacter koreensis WPCB189T, followed by Pedobacter agri PB92T (94.6%), Pedobacter suwonensis 15-52T (94.4%), Pedobacter rhizosphaerae 01-96T (94.4%), Pedobacter sandarakinus DS-27T (94.4%), and Nubsella zeaxanthinifaciens TDMA-5T (94.3%). Strain 5G38T formed monophyletic clade with Nubsella zeaxanthinifaciens in the cluster comprised of species of the genus Pedobacter. Chemotaxonomic characteristics of the novel strains, including DNA G+C content of genomic DNA (37.0 mol%), the predominant respiratory quinine (MK-7), and the major fatty acids which were iso-C15:0, summed feature 3 (comprising C16:1ω7c and/or iso-C15:0 2-OH) and iso-C17:0 3-OH, are similar to those of the genus Pedobacter. However, the novel strains can be distinguished from the other species of Pedobacter by physiological properties. The name Pedobacter namyangjuensis sp. nov. is therefore proposed for strain 5G38T (KACC 13938T =NBRC 107692T) as the type strain. Furthermore, the reclassification of Nubsella zeaxanthinifaciens as Pedobacter zeaxanthinifaciens comb. nov. is proposed.
-
Citations
Citations to this article as recorded by - Validation list no. 225: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Validation List no. 226: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Microaerobic methane-driven denitrification in a biotrickle bed – Investigating the active microbial biofilm community composition using RNA-stable isotope probing
Emmanuel O. Egbadon, Kathryn Wigley, Sunday T. Nwoba, Carlo R. Carere, Louise Weaver, Kim Baronian, Lee Burbery, Peter A. Gostomski
Chemosphere.2024; 346: 140528. CrossRef - Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer
Thijs Van Gerrewey, Christophe El-Nakhel, Stefania De Pascale, Jolien De Paepe, Peter Clauwaert, Frederiek-Maarten Kerckhof, Nico Boon, Danny Geelen
Microorganisms.2021; 9(6): 1326. CrossRef - Screening and Characterization of Two Extracellular Polysaccharide-Producing Bacteria from the Biocrust of the Mu Us Desert
Zhanfang Xue, Shuting Zhao, Nomin Bold, Jianguo Zhang, Zhimin Hu, Xiaofeng Hu, Ying Gao, Shaolin Chen, Yahong Wei
Molecules.2021; 26(18): 5521. CrossRef -
Pedobacter yulinensis sp. nov., isolated from sandy soil, and emended description of the genus Pedobacter
Yahong Wei, Baodan Wang, Limei Zhang, Jianguo Zhang, Shaolin Chen
International Journal of Systematic and Evolutionary Microbiology.2018; 68(8): 2523. CrossRef -
Pedobacter chitinilyticus sp. nov., a chitin-degrading bacterium isolated from wheat leaf tissue
Ling-Li Zhang, Long-Zhan Gan, Zhi-Bin Xu, Feng Yang, Yan Li, Xiao-Li Fan, Xiao-Feng Liu, Yong-Qiang Tian, Yu-Mei Dai
International Journal of Systematic and Evolutionary Microbiology.2018; 68(12): 3713. CrossRef - Molecular identification of bacterial endosymbionts of Sappinia strains
Daniele Corsaro, Claudia Wylezich, Julia Walochnik, Danielle Venditti, Rolf Michel
Parasitology Research.2017; 116(2): 549. CrossRef -
Pedobacter solisilvae sp. nov., isolated from forest soil
Dong Jin Yang, Jin-Kyung Hong
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(11): 4814. CrossRef - Pedobacter psychrotolerans sp. nov., isolated from soil
Pooja Manandhar, Gengxin Zhang, Arun Lama, Yilun Hu, Feng Gao
International Journal of Systematic and Evolutionary Microbiology.2016; 66(11): 4560. CrossRef -
Pedobacter ureilyticus sp. nov., isolated from tomato rhizosphere soil
Hien T. T. Ngo, MooChang Kook, Tae-Hoo Yi
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_3): 1008. CrossRef -
Pedobacter ardleyensis sp. nov., isolated from soil in Antarctica
Xuyang Da, Fan Jiang, Xulu Chang, Lvzhi Ren, Xia Qiu, Wenjing Kan, Yumin Zhang, Sangsang Deng, Chengxiang Fang, Fang Peng
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_11): 3841. CrossRef - Pedobacter bambusae sp. nov., isolated from soil of a bamboo plantation
Kyung Hwa Won, MooChang Kook, Tae-Hoo Yi
Antonie van Leeuwenhoek.2015; 107(2): 565. CrossRef -
Pedobacter nanyangensis sp. nov., isolated from herbicide-contaminated soil
Hao Zhang, Jing Zhang, Man Song, Ming-gen Cheng, Ya-dong Wu, Su-hui Guo, Qiang Li, Qing Hong, Xing Huang
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_10): 3517. CrossRef -
Pedobacter xixiisoli sp. nov., isolated from bank soil
Yanhua Zeng, Hao Feng, Yili Huang
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_11): 3683. CrossRef - Pedobacter nutrimenti sp. nov., isolated from chilled food
Julia Derichs, Peter Kämpfer, André Lipski
International Journal of Systematic and Evolutionary Microbiology.2014; 64(Pt_4): 1310. CrossRef - Pedobacter seoulensis sp. nov., isolated from soil of a bamboo field
Hien T. T. Ngo, Heung-Min Son, Sang-Yong Park, Ki-Young Kim, Tae-Hoo Yi
Antonie van Leeuwenhoek.2014; 105(5): 961. CrossRef - Infection of cells by Sindbis virus at low temperature
Gongbo Wang, Raquel Hernandez, Keith Weninger, Dennis T. Brown
Virology.2007; 362(2): 461. CrossRef
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