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Chankyu Park 4 Articles
Glyoxal Detoxification in Escherichia coli K-12 by NADPH Dependent Aldo-keto Reductases
Changhan Lee , Insook Kim , Chankyu Park
J. Microbiol. 2013;51(4):527-530.   Published online August 30, 2013
DOI: https://doi.org/10.1007/s12275-013-3087-8
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  • 16 Crossref
AbstractAbstract PDF
Glyoxal (GO) and methylglyoxal (MG) are reactive carbonyl compounds that are accumulated in vivo through various pathways. They are presumably detoxified through multiple pathways including glutathione (GSH)-dependent/independent glyoxalase systems and NAD(P)H dependent reductases. Previously, we reported an involvement of aldo-ketoreductases (AKRs) in MG detoxification. Here, we investigated the role of various AKRs (YqhE, YafB, YghZ, YeaE, and YajO) in GO metabolism. Enzyme activities of the AKRs to GO were measured, and GO sensitivities of the corresponding mutants were compared. In addition, we examined inductions of the AKR genes by GO. The results indicate that AKRs efficiently detoxify GO, among which YafB, YghZ, and YeaE are major players.

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  • Bacterial Adaptation to Stress Induced by Glyoxal/Methylglyoxal and Advanced Glycation End Products
    Dorota Kuczyńska-Wiśnik, Karolina Stojowska-Swędrzyńska, Ewa Laskowska
    Microorganisms.2025; 13(12): 2778.     CrossRef
  • Context-dependent change in the fitness effect of (in)organic phosphate antiporter glpT during Salmonella Typhimurium infection
    Noemi Santamaria de Souza, Yassine Cherrak, Thea Bill Andersen, Michel Vetsch, Manja Barthel, Sanne Kroon, Erik Bakkeren, Christopher Schubert, Philipp Christen, Patrick Kiefer, Julia A. Vorholt, Bidong D. Nguyen, Wolf-Dietrich Hardt
    Nature Communications.2025;[Epub]     CrossRef
  • Oxidation of glyoxal with the Mo-oxime complex in a benzalkonium chloride interface: Raghavan and Srinivasan kinetic model
    I.U. Nkole, M. Imam, D.E. Arthur
    Inorganic Chemistry Communications.2024; 170: 113524.     CrossRef
  • Glyoxal‑induced disruption of tumor cell progression in breast cancer
    Pu Rong, Li Yanchu, Guo Nianchun, Li Qi, Li Xianyong
    Molecular and Clinical Oncology.2023;[Epub]     CrossRef
  • Metabolic Detoxification of 2-Oxobutyrate by Remodeling Escherichia coli Acetate Bypass
    Yu Fang, Shuyan Zhang, Jianli Wang, Lianghong Yin, Hailing Zhang, Zhen Wang, Jie Song, Xiaoqing Hu, Xiaoyuan Wang
    Metabolites.2021; 11(1): 30.     CrossRef
  • Analysis of amino acids, hydroxy acids, and amines in CR chondrites
    José C. Aponte, Jamie E. Elsila, Jason E. Hein, Jason P. Dworkin, Daniel P. Glavin, Hannah L. McLain, Eric T. Parker, Timothy Cao, Eve L. Berger, Aaron S. Burton
    Meteoritics & Planetary Science.2020; 55(11): 2422.     CrossRef
  • Functional analysis of BPSS2242 reveals its detoxification role in Burkholderia pseudomallei under salt stress
    Kamonwan Chamchoy, Pornpan Pumirat, Onrapak Reamtong, Danaya Pakotiprapha, Ubolsree Leartsakulpanich, Usa Boonyuen
    Scientific Reports.2020;[Epub]     CrossRef
  • Escherichia coli adaptation and response to exposure to heavy atmospheric pollution
    Tian Zhang, Xiao-Chen Shi, Yangyang Xia, Liqiang Mai, Pier-Luc Tremblay
    Scientific Reports.2019;[Epub]     CrossRef
  • Production of ethylene glycol from xylose by metabolically engineered Escherichia coli
    Tong Un Chae, So Young Choi, Jae Yong Ryu, Sang Yup Lee
    AIChE Journal.2018; 64(12): 4193.     CrossRef
  • Bacterial Responses to Glyoxal and Methylglyoxal: Reactive Electrophilic Species
    Changhan Lee, Chankyu Park
    International Journal of Molecular Sciences.2017; 18(1): 169.     CrossRef
  • Coping with inevitable accidents in metabolism
    Antoine Danchin
    Microbial Biotechnology.2017; 10(1): 57.     CrossRef
  • Aldo‐keto reductase and alcohol dehydrogenase contribute to benznidazole natural resistance in Trypanosoma cruzi
    Laura González, Paola García‐Huertas, Omar Triana‐Chávez, Gabriela Andrea García, Silvane Maria Fonseca Murta, Ana M. Mejía‐Jaramillo
    Molecular Microbiology.2017; 106(5): 704.     CrossRef
  • Comparative Genomics of Sibling Species of Fonsecaea Associated with Human Chromoblastomycosis
    Vania A. Vicente, Vinícius A. Weiss, Amanda Bombassaro, Leandro F. Moreno, Flávia F. Costa, Roberto T. Raittz, Aniele C. Leão, Renata R. Gomes, Anamelia L. Bocca, Gheniffer Fornari, Raffael J. A. de Castro, Jiufeng Sun, Helisson Faoro, Michelle Z. Tadra-S
    Frontiers in Microbiology.2017;[Epub]     CrossRef
  • Engineering of a Synthetic Metabolic Pathway for the Assimilation of (d)-Xylose into Value-Added Chemicals
    Yvan Cam, Ceren Alkim, Debora Trichez, Vincent Trebosc, Amélie Vax, François Bartolo, Philippe Besse, Jean Marie François, Thomas Walther
    ACS Synthetic Biology.2016; 5(7): 607.     CrossRef
  • Screening forEscherichia coliK-12 genes conferring glyoxal resistance or sensitivity by transposon insertions
    Changhan Lee, Jihong Kim, Minsuk Kwon, Kihyun Lee, Haeyoung Min, Seong Hun Kim, Dongkyu Kim, Nayoung Lee, Jiyeun Kim, Doyun Kim, Changmin Ko, Chankyu Park, Richard Calendar
    FEMS Microbiology Letters.2016; 363(18): fnw199.     CrossRef
  • Optimization of ethylene glycol production from (d)-xylose via a synthetic pathway implemented in Escherichia coli
    Ceren Alkim, Yvan Cam, Debora Trichez, Clément Auriol, Lucie Spina, Amélie Vax, François Bartolo, Philippe Besse, Jean Marie François, Thomas Walther
    Microbial Cell Factories.2015;[Epub]     CrossRef
Mutations Upregulating the flhDC Operon of Escherichia coli K-12
Changhan Lee , Chankyu Park
J. Microbiol. 2013;51(1):140-144.   Published online March 2, 2013
DOI: https://doi.org/10.1007/s12275-013-2212-z
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  • 21 Crossref
AbstractAbstract PDF
Bacterial motility is governed by the flhDC master operon that is under the control of factors like OmpR, LrhA, HdfR, and H-NS. Previously, derivatives of the wild-type MG1655 strain of E. coli K-12 with enhanced motility were found to contain insertion sequences (ISs) in the regulatory region of the flhDC operon. Here, we report that not only integrations of IS insertion sequences into the regulatory region of the flhDC operon, but also a missense mutation in the lrhA gene enhances motility by relieving transcriptional repression of the flhDC operon. Two novel IS insertions were found upstream of flhDC. So far, the relationships between the transacting factors and the cis-acting regulatory sequences associated with the flhDC operon have not been clearly established. In this study, it was found that effects of the cis- and trans-acting mutations were acting in parallel, suggesting their apparently independent regulation of flagellar expression.

Citations

Citations to this article as recorded by  
  • Role of a single MCP in evolutionary adaptation of Shewanella putrefaciens for swimming in planktonic and structured environments
    Daniel B. Edelmann, Anna M. Jakob, Laurence G. Wilson, Rémy Colin, David Brandt, Frederik Eck, Jörn Kalinowski, Kai M. Thormann, Pablo Ivan Nikel
    Applied and Environmental Microbiology.2025;[Epub]     CrossRef
  • Laboratory Evolution Reveals Transcriptional Mechanisms Underlying Thermal Adaptation of Escherichia coli
    Kevin Rychel, Ke Chen, Edward A Catoiu, Elina Olson, Troy E Sandberg, Ye Gao, Sibei Xu, Ying Hefner, Richard Szubin, Arjun Patel, Adam M Feist, Bernhard O Palsson, Brian Golding
    Genome Biology and Evolution.2025;[Epub]     CrossRef
  • Motility-activating mutations upstream of flhDC reduce acid shock survival of Escherichia coli
    Kilian Schumacher, Djanna Braun, Karin Kleigrewe, Kirsten Jung, Jan Claesen
    Microbiology Spectrum.2024;[Epub]     CrossRef
  • TCS response regulator OmpR plays a major role in stress resistance, antibiotic resistance, motility, and virulence in Edwardsiella piscicida
    Xiaoping Huo, Chunmei Du, Huiqin Huang, Hanjie Gu, Xiwen Dong, Yonghua Hu
    Aquaculture.2022; 559: 738441.     CrossRef
  • From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions
    Matteo Mori, Zhongge Zhang, Amir Banaei‐Esfahani, Jean‐Benoît Lalanne, Hiroyuki Okano, Ben C Collins, Alexander Schmidt, Olga T Schubert, Deok‐Sun Lee, Gene‐Wei Li, Ruedi Aebersold, Terence Hwa, Christina Ludwig
    Molecular Systems Biology.2021;[Epub]     CrossRef
  • Gain of Spontaneous clpX Mutations Boosting Motility via Adaption to Environments in Escherichia coli
    Bingyu Li, Chaofan Hou, Xian Ju, Yong Feng, Zhi-Qiang Ye, Yunzhu Xiao, Mingyao Gu, Chunxiang Fu, Chaoliang Wei, Conghui You
    Frontiers in Bioengineering and Biotechnology.2021;[Epub]     CrossRef
  • Molecules involved in motility regulation inEscherichia colicells: a review
    Fazlurrahman Khan, Nazia Tabassum, Dung Thuy Nguyen Pham, Sandra Folarin Oloketuyi, Young-Mog Kim
    Biofouling.2020; 36(8): 889.     CrossRef
  • Stochastic transcriptional pulses orchestrate flagellar biosynthesis in Escherichia coli
    J. Mark Kim, Mayra Garcia-Alcala, Enrique Balleza, Philippe Cluzel
    Science Advances.2020;[Epub]     CrossRef
  • Rapid Accumulation of Motility-Activating Mutations in Resting Liquid Culture of Escherichia coli
    Darren J. Parker, Pınar Demetci, Gene-Wei Li, Yves V. Brun
    Journal of Bacteriology.2019;[Epub]     CrossRef
  • Behavioral Variability and Phenotypic Diversity in Bacterial Chemotaxis
    Adam James Waite, Nicholas W. Frankel, Thierry Emonet
    Annual Review of Biophysics.2018; 47(1): 595.     CrossRef
  • The EnvZ-OmpR Two-Component Signaling System Is Inactivated in a Mutant Devoid of Osmoregulated Periplasmic Glucans in Dickeya dadantii
    Marine Caby, Sébastien Bontemps-Gallo, Peggy Gruau, Brigitte Delrue, Edwige Madec, Jean-Marie Lacroix
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Suppressor analysis of eepR mutant defects reveals coordinate regulation of secondary metabolites and serralysin biosynthesis by EepR and HexS
    Robert M. Q Shanks, Nicholas A Stella, Roni M Lahr, Marissa A Aston, Kimberly M Brothers, Jake D Callaghan, Cihad Sigindere, Xinyu Liu
    Microbiology.2017; 163(2): 280.     CrossRef
  • Environment-directed activation of the Escherichia coli flhDC operon by transposons
    Zhongge Zhang, Chika Kukita, M. Zafri Humayun, Milton H Saier
    Microbiology.2017; 163(4): 554.     CrossRef
  • Activation of leuO by LrhA in Escherichia coli
    Hannes Breddermann, Karin Schnetz
    Molecular Microbiology.2017; 104(4): 664.     CrossRef
  • Involvement of Two-Component Signaling on Bacterial Motility and Biofilm Development
    Birgit M. Prüß, William Margolin
    Journal of Bacteriology.2017;[Epub]     CrossRef
  • Spontaneous mutations in the flhD operon generate motility heterogeneity in Escherichia coli biofilm
    Shelley M. Horne, Joseph Sayler, Nicholas Scarberry, Meredith Schroeder, Ty Lynnes, Birgit M. Prüß
    BMC Microbiology.2016;[Epub]     CrossRef
  • Regulation of flagellar gene expression in Bacteria
    I. A. Osterman, Yu. Yu. Dikhtyar, A. A. Bogdanov, O. A. Dontsova, P. V. Sergiev
    Biochemistry (Moscow).2015; 80(11): 1447.     CrossRef
  • YjjQ Represses Transcription of flhDC and Additional Loci in Escherichia coli
    Helene Wiebe, Doreen Gürlebeck, Jana Groß, Katrin Dreck, Derk Pannen, Christa Ewers, Lothar H. Wieler, Karin Schnetz, R. L. Gourse
    Journal of Bacteriology.2015; 197(16): 2713.     CrossRef
  • Mutations That StimulateflhDCExpression in Escherichia coli K-12
    Karen A. Fahrner, Howard C. Berg, R. L. Gourse
    Journal of Bacteriology.2015; 197(19): 3087.     CrossRef
  • Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network
    Devon M. Fitzgerald, Richard P. Bonocora, Joseph T. Wade, Lotte Søgaard-Andersen
    PLoS Genetics.2014; 10(10): e1004649.     CrossRef
  • OmpR and RcsB abolish temporal and spatial changes in expression of flhD in Escherichia coli Biofilm
    Priyankar Samanta, Emily R Clark, Katie Knutson, Shelley M Horne, Birgit M Prüß
    BMC Microbiology.2013;[Epub]     CrossRef
Development of a Suicidal Vector-Cloning System Based on Butanal Susceptibility Due to an Expression of YqhD Aldehyde Reductase
Changhan Lee , Chankyu Park
J. Microbiol. 2012;50(2):249-255.   Published online April 27, 2012
DOI: https://doi.org/10.1007/s12275-012-1438-5
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AbstractAbstract PDF
Previously, we observed butanal/propanal sensitivity of Escherichia coli K-12 when cells overexpress YqhD protein, a NADPH dependent aldehyde reductase, possibly due to an accumulation of butanol/propanol in vivo as the reaction products. Based on this finding, we developed a suicidal vector-cloning system derived from pUC19, in which lacZ was substituted with the yqhD gene. As a result, when foreign DNA was inserted into its multiple cloning sites by disrupting an expression of YqhD, the recombinants survived on butanal/propanal containing plate, whereas cells containing the YqhD vector died because of the alcohol production by YqhD. The cloning efficiency, estimated based on colony PCR and enzyme digestion, was achieved more than 90% when the suicidal vector system was used. Moreover, the plasmid vector itself was stably maintained in the cell, presumably due to its ability to remove toxic aldehydes being accumulated in E. coli cell by metabolic stress.

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  • Industrial light at the end of the iron‐containing (group III) alcohol dehydrogenase tunnel
    Anirudh P. Shanbhag, Arindam Ghatak, Sreenath Rajagopal
    Biotechnology and Applied Biochemistry.2023; 70(2): 537.     CrossRef
  • Group III alcohol dehydrogenase from Pectobacterium atrosepticum: insights into enzymatic activity and organization of the metal ion-containing region
    Skander Elleuche, Krisztian Fodor, Amélie von der Heyde, Barbara Klippel, Matthias Wilmanns, Garabed Antranikian
    Applied Microbiology and Biotechnology.2014; 98(9): 4041.     CrossRef
  • pKILLIN: a versatile positive-selection cloning vector based on the toxicity of Killin in Escherichia coli
    Zelong Ma, Dan Luo, Anliang Huang, Yang Xu, Yunxiao Wang, Yuquan Wei, Peng Liang
    Gene.2014; 544(2): 228.     CrossRef
  • Comparative analysis of two members of the metal ion-containing group III-alcohol dehydrogenases from Dickeya zeae
    Skander Elleuche, Barbara Klippel, Amélie von der Heyde, Garabed Antranikian
    Biotechnology Letters.2013; 35(5): 725.     CrossRef
Screening of Genes Related to Methylglyoxal Susceptibility
Insook Kim , Joonho Kim , Bumchan Min , Changhan Lee , Chankyu Park
J. Microbiol. 2007;45(4):339-343.
DOI: https://doi.org/2563 [pii]
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AbstractAbstract PDF
Methylglyoxal (MG) is a reactive metabolite known to accumulate in certain physiological conditions. We attempted to isolate genes associated with this metabolite by genome-wide mutagenesis with TnphoA derivative. After screening on methylglyoxal-containing plate, we obtained insertions in three different genes, ydbD, yjjQ, and yqiI, which gave rise to reproducible MG-sensitive phenotypes in glyoxalase-deficient strain. In addition to its MG sensitivity, the insertion in yqiI exhibited an impaired motility resulting from a reduced flagellar expression.

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