- Hymenobacter terrigena sp. nov., isolated from soil
-
Jeong-Eun Ohn , Leonid N. Ten , Kyeung Il Park , Byung-Oh Kim , Jeung-Sul Han , Hee-Young Jung
-
J. Microbiol. 2018;56(4):231-237. Published online April 2, 2018
-
DOI: https://doi.org/10.1007/s12275-018-8029-z
-
-
835
View
-
0
Download
-
4
Crossref
-
 Abstract
 PDF
-
A Gram-stain-negative, non-motile, non-spore-forming, rodshaped,
aerobic bacterial strain, designated S1-2-2-5T, was isolated
from the Jeollabuk-do province, Republic of Korea, and
was characterized taxonomically using a polyphasic approach.
Comparative 16S rRNA gene sequence analysis showed that
strain S1-2-2-5T belonged to the family Cytophagaceae in phylum
Bacteroidetes, and was most closely related to Hymenobacter
terrae DG7AT (98.2%), Hymenobacter rubidus DG7BT
(98.0%), Hymenobacter soli PB17T (97.7%), Hymenobacter
daeguensis 16F3Y-2T (97.2%) and Hymenobacter saemangeumensis
GSR0100T (97.0%). The G + C content of the genomic
DNA of strain S1-2-2-5T was 59.4 mol%. The detection of
menaquinone MK-7 as the predominant respiratory quinone,
a fatty acid profile with summed feature 3 (C16:1 ω7c/C16:1 ω6c;
32.0%), C15:0 iso (19.0%), and C15:0 anteiso (15.0%) as the major
components, and a polar lipid profile with phosphatidylethanolamine
as the major component supported the affiliation
of strain S1-2-2-5T to the genus Hymenobacter. The
DNA-DNA relatedness between strain S1-2-2-5T and H.
terrae KCTC 32554T, H. rubidus KCTC 32553T, H. soli KCTC
12607T, H. daeguensis KCTC 52537T, and H. saemangeumensis
KACC 16452T were 49.5, 48.2, 34.1, 28.1, and 31.8% respectively,
clearly showing that the isolate is not related to them
at the species level. Strain S1-2-2-5T could be clearly differentiated
from its closest neighbors on the basis of its phenotypic,
genotypic and chemotaxonomic features. Therefore,
strain S1-2-2-5T represents a novel species of the genus Hymenobacter,
for which the name Hymenobacter terrigena
sp. nov. is proposed. The type strain is S1-2-2-5T (= KCTC
52737T = JCM 32195T).
-
Citations
Citations to this article as recorded by  - Isolation and characterization of two new species, Hymenobacter mellowenesis sp. nov. and Hymenobacter aranciens sp. nov., from soil
Seonjae Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
Archives of Microbiology.2024;[Epub] CrossRef -
Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Hymenobacter cyanobacteriorum sp. nov., isolated from a freshwater reservoir during the cyanobacterial bloom period
Ve Van Le, So-Ra Ko, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
Archives of Microbiology.2022;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology.2018; 68(9): 2707. CrossRef
- Spirosoma lituiforme sp. nov., isolated from soil
-
Weilan Li , Seung-Yeol Lee , Sangkyu Park , Byung-Oh Kim , Leonid N. Ten , Hee-Young Jung
-
J. Microbiol. 2017;55(11):856-861. Published online October 27, 2017
-
DOI: https://doi.org/10.1007/s12275-017-7255-0
-
-
1,000
View
-
0
Download
-
4
Crossref
-
Abstract
PDF
-
A Gram-staining-negative, non-motile, curved rod-shaped,
aerobic bacterium, designated S1-2-4T, was isolated from
soil in Jeollabuk-do province, Republic of Korea, and was
characterized taxonomically using a polyphasic approach.
Comparative 16S rRNA gene sequence analysis showed that
strain S1-2-4T was a member of the family Cytophagaceae
and most closely related to ‘Spirosoma radiotolerans’ DG5A
(97.2%), Spirosoma fluviale MSd3T (96.4%), and Spirosoma
linguale DSM 74T (96.3%). The genomic DNA G + C content
of strain S1-2-4T was 49.7 mol%. The major fatty acids were
summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, and C16:0,
and the major polar lipid was phosphatidylethanolamine.
MK-7 was the predominant respiratory quinone. Phenotypic
and chemotaxonomic data supported the affiliation of strain
S1-2-4T with the genus Spirosoma. DNA-DNA hybridization
between strain S1-2-4T and ‘Spirosoma radiotolerans’ showed
relatively low DNA-DNA relatedness (31%). Strain S1-2-4T
could be distinguished from its closest phylogenetic neighbors
based on its phenotypic, genotypic, and chemotaxonomic
features. Therefore, strain S1-2-4T represents a novel
member of the genus Spirosoma, for which the name Spirosoma
lituiforme sp. nov. is proposed. The type strain is S1-
2-4T (= KCTC 52724T = JCM 32128T).
-
Citations
Citations to this article as recorded by -
Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
Antonie van Leeuwenhoek.2019; 112(10): 1523. CrossRef -
Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
Guillaume Tahon, Liesbeth Lebbe, Anne Willems
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2018; 68(3): 693. CrossRef
|
MSK
