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Rubrivirga aquatilis sp. nov. and Rubrivirga halophila sp. nov., isolated from Korean coastal surface seawater
Jisoo Han, Yeonjung Lim, Mirae Kim, Jang-Cheon Cho
J. Microbiol. 2025;63(8):e2504017.   Published online August 13, 2025
DOI: https://doi.org/10.71150/jm.2504017
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AbstractAbstract PDFSupplementary Material

Two Gram-stain-negative, obligately aerobic, non-motile, short rod-shaped bacteria, designated IMCC43871T and IMCC45206T, were isolated from coastal surface seawater collected from the Yellow Sea and the South Sea of Korea, respectively. The two strains shared 99.2% 16S rRNA gene sequence similarity with each other and exhibited ≤ 98.4% similarity to three described Rubrivirga species. Average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between IMCC43871T and IMCC45206T were 88.5% and 36.3%, respectively, confirming that they represent two distinct species. Their ANI (≤ 77.7%) and dDDH (≤ 21.4%) values relative to the type strains of the genus Rubrivirga further supported the recognition of strains IMCC43871T and IMCC45206T as two novel species within the genus. The complete genomes of IMCC43871T (4.17 Mb, 71.8% G + C content) and IMCC45206T (4.17 Mb, 72.8% G + C content) fall within the known genomic range of the genus. Cellular fatty acid, quinone, and polar lipid profiles were consistent with the chemotaxonomic features of the genus Rubrivirga, supporting their affiliation with the genus. Based on phylogenetic, genomic, and phenotypic evidence, strains IMCC43871T and IMCC45206T are proposed as two novel species, Rubrivirga aquatilis sp. nov. and Rubrivirga halophila sp. nov., respectively. The type strains are IMCC43871T (= KCTC 102072T = NBRC 116463T) and IMCC45206T (= KCTC 92925T = NBRC 116172T = CCTCC AB 2023136T).
Journal Articles
Leuconostoc aquikimchii sp. nov., a Lactic Acid Bacterium Isolated from Cabbage Watery Kimchi
Subin Kim, Se Hee Lee, Ki Hyun Kim, Misun Yun
J. Microbiol. 2024;62(12):1089-1097.   Published online December 2, 2024
DOI: https://doi.org/10.1007/s12275-024-00188-z
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AbstractAbstract PDF
Two Gram-stain-positive, facultatively anaerobic, non-hemolytic, coccoid-shaped bacterial strains, designated MS01(T) and MS02, were isolated from cabbage watery kimchi in the Republic of Korea. Cellular growth occurred at 5-25 ℃ (optimum, 20 ℃), pH 5-8 (optimum, pH 7) and in the presence of 0-5% (w/v) NaCl (optimum, 1%). Results of 16S rRNA gene-based phylogenetic analyses showed that strains MS01(T) and MS02 shared identical sequences, clustered within the Leuconostoc clade in phylogenetic trees, and were most closely related to Leuconostoc inhae IH003(T) and Leuconostoc gasicomitatum LMG 18811(T) with sequence similarities of 98.74%. The complete whole-genome sequences of strains MS01(T) and MS02 measured 2.04-2.06 Mbp and harbored a 50.6 kb plasmid, with DNA G + C contents of 37.7% for both. Based on average nucleotide identities (ANI) and digital DNA-DNA hybridization (dDDH) values, both strains were confirmed to belong to the same species but showed ≤ 85.9% ANI and ≤ 29.9% dDDH values to other Leuconostoc species, indicating that they represent a novel species. Metabolic pathway reconstruction revealed that both strains perform heterolactic acid fermentation, producing lactate, acetate, and ethanol. Chemotaxonomic analyses, including cellular fatty acids, polar lipids, and peptidoglycan amino acid, confirmed the inclusion of both strains within the genus Leuconostoc. Based on the phylogenetic, genomic, and phenotypic characterization, strains MS01(T) and MS02 were considered to represent a novel species within the genus Leuconostoc, for which the name Leuconostoc aquikimchii sp. nov. is proposed with MS01(T) (= KACC 23748(T) = JCM 37028(T)) as the type strain.

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  • Validation List no. 224. Valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. Within the OM60/NOR5 Clade, Isolated from Seawater, and Emended Description of the Genus Congregibacter
Hyeonsu Tak, Miri S Park, Hyerim Cho, Yeonjung Lim, Jang-Cheon Cho
J. Microbiol. 2024;62(9):739-748.   Published online July 18, 2024
DOI: https://doi.org/10.1007/s12275-024-00158-5
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AbstractAbstract PDF
Two Gram-stain-negative, aerobic, motile by means of flagella, short rod-shaped bacterial strains, designated IMCC43200(T) and IMCC45268(T), were isolated from coastal seawater samples collected from the South Sea of Korea. Strains IMCC43200(T) and IMCC45268(T) shared 98.6% 16S rRNA gene sequence similarity and were closely related to Congregibacter litoralis KT71(T) (98.8% and 98.7%, respectively). Complete whole-genome sequences of IMCC43200(T) and IMCC45268(T) were 3.93 and 3.86 Mb in size with DNA G + C contents of 54.8% and 54.2%, respectively. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between the two strains were 74.5% and 23.4%, respectively, revealing that they are independent species. The two strains showed ANI values of ≤ 75.8% and dDDH values of ≤ 23.0% to the type and only species of the genus Congregibacter (C. litoralis), indicating that each strain represents a novel species. Both strains contained summed feature 3 (comprising C(16:1) ω6c and/or C(16:1) ω7c) and summed feature 8 (comprising C(18:1) ω6c and/or C(18:1) ω7c) as major fatty acid constituents. The predominant isoprenoid quinone detected in both strains was ubiquinone-8 (Q-8). The major polar lipids of the two strains were phosphatidylethanolamine, phosphatidylglycerol, phospholipids, and aminolipids. Based on the phylogenetic, genomic, and phenotypic characterization, strains IMCC43200(T) and IMCC45268(T) were considered to represent two novel species within the genus Congregibacter, for which the names Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. are proposed with IMCC43200(T) (= KCTC 8133(T) = NBRC 116295(T) = CCTCC AB 2023139(T)) and IMCC45268(T) (= KCTC 92921(T) = NBRC 116135(T)) as the type strains, respectively.

Citations

Citations to this article as recorded by  
  • Validation List no. 223. Valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Phycobium rhodophyticola gen. nov., sp. nov. and Aliiphycobium algicola gen. nov., sp. nov., isolated from the phycosphere of marine red algae
    Jeong Min Kim, Woonhee Baek, Byeong Jun Choi, Hülya Bayburt, Jae Kyeong Lee, Sung Chul Lee, Che Ok Jeon
    Journal of Microbiology.2025; 63(6): e2503014.     CrossRef
  • Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 42
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Rubrivirga aquatilis sp. nov. and Rubrivirga halophila sp. nov., isolated from Korean coastal surface seawater
    Jisoo Han, Yeonjung Lim, Mirae Kim, Jang-Cheon Cho
    Journal of Microbiology.2025; 63(8): e2504017.     CrossRef
  • Leuconostoc aquikimchii sp. nov., a Lactic Acid Bacterium Isolated from Cabbage Watery Kimchi
    Subin Kim, Se Hee Lee, Ki Hyun Kim, Misun Yun
    Journal of Microbiology.2024; 62(12): 1089.     CrossRef
Medium Chain Length Polyhydroxyalkanoate Production by Engineered Pseudomonas gessardii Using Acetate-formate as Carbon Sources
Woo Young Kim, Seung-Jin Kim, Hye-Rin Seo, Yoonyong Yang, Jong Seok Lee, Moonsuk Hur, Byoung-Hee Lee, Jong-Geol Kim, Min-Kyu Oh
J. Microbiol. 2024;62(7):569-579.   Published online May 3, 2024
DOI: https://doi.org/10.1007/s12275-024-00136-x
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AbstractAbstract PDF
Production of medium chain length polyhydroxyalkanoate (mcl-PHA) was attempted using Pseudomonas gessardii NIBRBAC000509957, which was isolated from Sunchang, Jeollabuk-do, Republic of Korea (35°24'27.7"N, 127°09'13.0"E) and effectively utilized acetate and formate as carbon sources. We first evaluated the utilization of acetate as a carbon source, revealing optimal growth at 5 g/L acetate. Then, formate was supplied to the acetate minimal medium as a carbon source to enhance cell growth. After overexpressing the acetate and formate assimilation pathway enzymes, this strain grew at a significantly higher rate in the medium. As this strain naturally produces PHA, it was further engineered metabolically to enhance mcl-PHA production. The engineered strain produced 0.40 g/L of mcl-PHA with a biomass content of 30.43% in fed-batch fermentation. Overall, this strain can be further developed to convert acetate and formate into valuable products.

Citations

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  • Formate-driven photoautotrophic growth and biopolymer storage in anaerobic purple bacteria
    Mohammad Adib Ghazali Abdul Rahman, Bronwyn Laycock, Steven Pratt, Damien J. Batstone
    Bioresource Technology.2025; 434: 132753.     CrossRef
  • Sulphide and oleic acid synergism in accelerating mcl-PHA biopolymer production in Pseudomonas aeruginosa MCC 5300 by modulating electron transport system
    Raghavendra Paduvari, Divyashree Somashekara
    Biochemistry and Biophysics Reports.2025; 44: 102286.     CrossRef
  • Unlocking efficient polyhydroxyalkanoate production by Gram-positive Priestia megaterium using waste-derived feedstocks
    Xinyi Bai, Libo Xu, Kang Li, Guangbao Zhang, Mengjun Zhang, Yi Huang
    Microbial Cell Factories.2025;[Epub]     CrossRef
  • Selective utilization of formic acid and acetic acid in succinic acid fermentation broth to produce single-cell protein using Rhodotorula glutinis
    Fuqiang Liu, Pengfei Wu, Lin Yu, Zitu Lü, Xinying Sun, Jiaxin Li, Lei Liu, Jing Wu, Jianan Zhang
    Bioprocess and Biosystems Engineering.2025;[Epub]     CrossRef
Saxibacter everestensis gen. nov., sp. nov., A Novel Member of the Family Brevibacteriaceae, Isolated from the North Slope of Mount Everest
Mao Tian, Shiyu Wu, Wei Zhang, Gaosen Zhang, Xue Yu, Yujie Wu, Puchao Jia, Binglin Zhang, Tuo Chen, Guangxiu Liu
J. Microbiol. 2024;62(4):277-284.   Published online March 6, 2024
DOI: https://doi.org/10.1007/s12275-024-00108-1
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AbstractAbstract PDF
We isolated and analyzed a novel, Gram-stain-positive, aerobic, rod-shaped, non-motile actinobacterium, designated as strain ZFBP1038(T), from rock sampled on the north slope of Mount Everest. The growth requirements of this strain were 10-37 °C, pH 4-10, and 0-6% (w/v) NaCl. The sole respiratory quinone was MK-9, and the major fatty acids were anteiso-C(15:0) and iso-C(17:0). Peptidoglycan containing meso-diaminopimelic acid, ribose, and glucose were the major cell wall sugars, while polar lipids included diphosphatidyl glycerol, phosphatidyl glycerol, an unidentified phospholipid, and an unidentified glycolipid. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain ZFBP1038(T) has the highest similarity with Spelaeicoccus albus DSM 26341( T) (96.02%). ZFBP1038(T) formed a distinct monophyletic clade within the family Brevibacteriaceae and was distantly related to the genus Spelaeicoccus. The G + C content of strain ZFBP1038(T) was 63.65 mol% and the genome size was 4.05 Mb. Digital DNA-DNA hybridization, average nucleotide identity, and average amino acid identity values between the genomes of strain ZFBP1038(T) and representative reference strains were 19.3-25.2, 68.0-71.0, and 52.8-60.1%, respectively. Phylogenetic, phenotypic, and chemotaxonomic characteristics as well as comparative genome analyses suggested that strain ZFBP1038(T) represents a novel species of a new genus, for which the name Saxibacter gen. nov., sp. nov. was assigned with the type strain Saxibacter everestensis ZFBP1038(T) (= EE 014( T) = GDMCC 1.3024( T) = JCM 35335( T)).
Structural and Functional Analyses of the Flavoprotein Disulfide Reductase FN0820 of Fusobacterium nucleatum
Hyunwoo Shin , Yeongjin Baek , Dukwon Lee , Yongbin Xu , Yonghoon Kwon , Inseong Jo , Nam-Chul Ha
J. Microbiol. 2023;61(12):1033-1041.   Published online December 20, 2023
DOI: https://doi.org/10.1007/s12275-023-00095-9
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AbstractAbstract PDF
Escherichia coli RclA and Staphylococcus aureus MerA are part of the Group I flavoprotein disulfide reductase (FDR) family and have been implicated in the contribution to bacterial pathogenesis by defending against the host immune response. Fusobacterium nucleatum is a pathogenic, anaerobic Gram-negative bacterial species commonly found in the human oral cavity and gastrointestinal tract. In this study, we discovered that the F. nucleatum protein FN0820, belonging to the Group I FDR family, exhibited a higher activity of a Cu2+- dependent NADH oxidase than E. coli RclA. Moreover, FN0820 decreased the dissolved oxygen level in the solution with higher NADH oxidase activity. We found that L-tryptophan and its analog 5-hydroxytryptophan inhibit the FN0820 activities of NADH oxidase and the concomitant reduction of oxygen. Our results have implications for developing new treatment strategies against pathogens that defend the host immune response with Group I FDRs.

Citations

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  • The role of metals in hypothiocyanite resistance in Escherichia coli
    Michael J. Gray, Laurie E. Comstock
    Journal of Bacteriology.2024;[Epub]     CrossRef
Comparison of Ganoderma boninense Isolate’s Aggressiveness Using Infected Oil Palm Seedlings
Mei Lieng Lo , Tu Anh Vu Thanh , Frazer Midot , Sharon Yu Ling Lau , Wei Chee Wong , Hun Jiat Tung , Mui Sie Jee , Mei-Yee Chin , Lulie Melling
J. Microbiol. 2023;61(4):449-459.   Published online April 25, 2023
DOI: https://doi.org/10.1007/s12275-023-00040-w
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AbstractAbstract PDF
Basal stem rot incidence caused by a white-rot fungus, Ganoderma boninense, is the major disease of oil palm in Southeast Asia. The rate of disease transmission and host damage are affected by variations in pathogen aggressiveness. Several other studies have used the disease severity index (DSI) to determine G. boninense aggressiveness levels while verifying disease using a culture-based method, which might not provide accurate results or be feasible in all cases. To differentiate G. boninense aggressiveness, we employed the DSI and vegetative growth measurement of infected oil palm seedlings. Disease confirmation was performed through scanning electron microscopy and molecular identification of fungal DNA from both infected tissue and fungi isolated from Ganoderma selective medium. Two-month-old oil palm seedlings were artificially inoculated with G. boninense isolates (2, 4A, 5A, 5B, and 7A) sampled from Miri (Lambir) and Mukah (Sungai Meris and Sungai Liuk), Sarawak. The isolates were categorized into three groups: highly aggressive (4A and 5B), moderately aggressive (5A and 7A), and less aggressive (2). Isolate 5B was identified as the most aggressive, and it was the only one to result in seedling mortality. Out of the five vegetative growth parameters measured, only the bole size between treatments was not affected. The integration of both conventional and molecular approaches in disease confirmation allows for precise detection.

Citations

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  • First Report of Ganoderma ryvardenii causing Basal Stem Rot (BSR) disease on oil palm (Elaeis guineensis Jacq.) in Ghana
    Emmanuellah Lekete-Lawson, Grace C. van der Puije, Enoch A. Osekre, Frank K. Ackah
    F1000Research.2025; 14: 413.     CrossRef
  • Gene expression of transcripts encoding putative secreted proteins from an oil palm fungal pathogen Ganoderma boninense
    Mui Sie Jee, Chai-Ling Ho, Mohd Termizi Yusof, Sharon Yu Ling Lau, Frazer Midot, Mei Lieng Lo, Mei-Yee Chin, Lulie Melling
    Physiological and Molecular Plant Pathology.2025; 138: 102715.     CrossRef
  • First Report of Ganoderma ryvardenii causing Basal Stem Rot (BSR) disease on oil palm (Elaeis guineensis Jacq.) in Ghana
    Emmanuellah Lekete-Lawson, Grace C. van der Puije, Enoch A. Osekre, Frank K. Ackah
    F1000Research.2025; 14: 413.     CrossRef
  • A review update on Ganoderma species: etiology and management approaches
    Pratibha Thakur, Sonali Khanal, Ashwani Tapwal, Neha Sharma, Poonam Chauhan, Tamanna Singh Thakur, Dinesh Kumar, Rachna Verma
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • An In-Depth Study of Phytopathogenic Ganoderma: Pathogenicity, Advanced Detection Techniques, Control Strategies, and Sustainable Management
    Samantha C. Karunarathna, Nimesha M. Patabendige, Wenhua Lu, Suhail Asad, Kalani K. Hapuarachchi
    Journal of Fungi.2024; 10(6): 414.     CrossRef
  • Advancements in the nanodelivery of azole-based fungicides to control oil palm pathogenic fungi
    Azren Aida Asmawi, Fatmawati Adam, Nurul Aini Mohd Azman, Mohd Basyaruddin Abdul Rahman
    Heliyon.2024; 10(18): e37132.     CrossRef
  • Characterizations of Ganoderma species causing basal stem rot disease in coconut tree
    Umesh Sajjan, Manjunath Hubballi, Abhay K. Pandey, V. Devappa, H. P. Maheswarappa
    3 Biotech.2024;[Epub]     CrossRef
Comparison of Conjunctival Sac Microbiome between Low and High Myopic Eyes
Kang Xiao , Zhengyu Chen , Qin Long
J. Microbiol. 2023;61(5):571-578.   Published online April 21, 2023
DOI: https://doi.org/10.1007/s12275-023-00045-5
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AbstractAbstract PDF
Microbial communities played a vital role in maintaining homeostasis of ocular surface. However, no studies explored the myopia-associated conjunctiva microbiota changes until now. In this study, conjunctival sac swab specimens were collected from 12 eyes of low myopia (LM), and 14 eyes of high myopia (HM) patients. The V3–V4 region of the 16S rRNA gene was amplified and then sequenced. Statistical analysis was performed to investigate differences in the taxonomy and diversity between two groups. Compared to LM, higher Ocular Surface Disease Index (OSDI) scores were observed in HM group. The Shannon index of the HM was lower than that of the LM group (P = 0.017). Principle coordinate analysis and Partial Least Squares Discrimination Analysis showed distinct microbiome composition between two groups. At the phylum level, there were higher relative abundances of Proteobacteria (68.27% vs 38.51%) and lower abundances of Actinobacteria (3.71% vs 9.19%) in HM, compared to LM group (P = 0.031, 0.010, respectively). At the genus level, the abundances of Acinetobacter in HM (18.16%) were significantly higher than the LM (6.52%) group (P = 0.011). Actinobacteria levels were negatively correlated with the myopic spherical equivalent and OSDI scores. Moreover, positive correlations were found between Proteobacteria levels and OSDI scores, Acinetobacter levels were positively correlated with myopic spherical equivalent and OSDI scores. In conclusion, HM Patients have bacterial microbiota imbalance in the conjunctival sac, compared with LM patients. Proteobacteria, Actinobacteria, Acinetobacter may play roles in the HM associated ocular surface irritation.

Citations

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  • Harnessing Lactiplantibacillus plantarum EP21 and its membrane vesicles to inhibit myopia development
    Chi-Fong Lin, Yu-An Hsu, Yung-Lan Chou, Ying-Chi Chen, En-Shyh Lin, Peng-Tai Tien, Jamie jiin-Yi Chen, Ming-Yen Wu, Chia-Hung Lin, Hui-Ju Lin, Lei Wan
    Gut Microbes.2025;[Epub]     CrossRef
  • Gut Microbiota Profiles in Myopes and Nonmyopes
    Wan E. W. Omar, Gurdeep Singh, Andrew J. McBain, Fiona Cruickshank, Hema Radhakrishnan
    Investigative Ophthalmology & Visual Science.2024; 65(5): 2.     CrossRef
[Protocol] Development of DNA aptamers specific for small therapeutic peptides using a modified SELEX method
Jaemin Lee , Minkyung Ryu , Dayeong Bae , Hong-Man Kim , Seong-il Eyun , Jeehyeon Bae , Kangseok Lee
J. Microbiol. 2022;60(7):659-667.   Published online June 22, 2022
DOI: https://doi.org/10.1007/s12275-022-2235-4
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AbstractAbstract PDF
Aptamers are short single-stranded DNA or RNA oligonucleotides capable of binding with high affinity and specificity to target molecules. Because of their durability and ease of synthesis, aptamers are used in a wide range of biomedical fields, including the diagnosis of diseases and targeted delivery of therapeutic agents. The aptamers were selected using a process called systematic evolution of ligands by exponential enrichment (SELEX), which has been improved for various research purposes since its development in 1990. In this protocol, we describe a modified SELEX method that rapidly produces high aptamer screening yields using two types of magnetic beads. Using this method, we isolated an aptamer that specifically binds to an antimicrobial peptide. We suggest that by conjugating a small therapeutic-specific aptamer to a gold nanoparticle-based delivery system, which enhances the stability and intracellular delivery of peptides, aptamers selected by our method can be used for the development of therapeutic agents utilizing small therapeutic peptides.

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  • Recent approaches in the application of antimicrobial peptides in food preservation
    Satparkash Singh, Bhavna Jha, Pratiksha Tiwari, Vinay G. Joshi, Adarsh Mishra, Yashpal Singh Malik
    World Journal of Microbiology and Biotechnology.2024;[Epub]     CrossRef
  • Design and application of microfluidics in aptamer SELEX and Aptasensors
    Shikun Zhang, Yingming Zhang, Zhiyuan Ning, Mengxia Duan, Xianfeng Lin, Nuo Duan, Zhouping Wang, Shijia Wu
    Biotechnology Advances.2024; 77: 108461.     CrossRef
  • Nanogenosensors based on aptamers and peptides for bioelectrochemical cancer detection: an overview of recent advances in emerging materials and technologies
    Babak Mikaeeli Kangarshahi, Seyed Morteza Naghib
    Discover Applied Sciences.2024;[Epub]     CrossRef
  • Recent progress of SELEX methods for screening nucleic acid aptamers
    Chao Zhu, Ziru Feng, Hongwei Qin, Lu Chen, Mengmeng Yan, Linsen Li, Feng Qu
    Talanta.2024; 266: 124998.     CrossRef
  • Aptamer-conjugated gold nanoparticles platform as the intracellular delivery of antibodies for cancer therapy
    Ji-Hyun Yeom, Eunkyoung Shin, Hanyong Jin, Haifeng Liu, Yongyang Luo, Youngwoo Nam, Minkyung Ryu, Wooseok Song, Heeyoun Chi, Jeongkyu Kim, Kangseok Lee, Jeehyeon Bae
    Journal of Industrial and Engineering Chemistry.2023; 126: 480.     CrossRef
  • Regulation of transforming growth factor-β signaling as a therapeutic approach to treating colorectal cancer
    Jana Maslankova, Ivana Vecurkovska, Miroslava Rabajdova, Jana Katuchova, Milos Kicka, Michala Gayova, Vladimir Katuch
    World Journal of Gastroenterology.2022; 28(33): 4744.     CrossRef
Integrated proteomic and metabolomic analyses reveal significant changes in chloroplasts and mitochondria of pepper (Capsicum annuum L.) during Sclerotium rolfsii infection
Hongdong Liao , Xiangyu Wen , Xuelei Deng , Yonghong Wu , Jianping Xu , Xin Li , Shudong Zhou , Xuefeng Li , Chunhui Zhu , Feng Luo , Yanqing Ma , Jingyuan Zheng
J. Microbiol. 2022;60(5):511-525.   Published online March 31, 2022
DOI: https://doi.org/10.1007/s12275-022-1603-4
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AbstractAbstract PDF
Infection by Sclerotium rolfsii will cause serious disease and lead to significant economic losses in chili pepper. In this study, the response of pepper during S. rolfsii infection was explored by electron microscopy, physiological determination and integrated proteome and metabolome analyses. Our results showed that the stomata of pepper stems were important portals for S. rolfsii infection. The plant cell morphology was significantly changed at the time of the fungal hyphae just contacting (T1) or surrounding (T2) the pepper. The chlorophyll, carotenoid, and MDA contents and the activities of POD, SOD, and CAT were markedly upregulated at T1 and T2. Approximately 4129 proteins and 823 metabolites were clearly identified in proteome and metabolome analyses, respectively. A change in 396 proteins and 54 metabolites in pepper stem tissues was observed at T1 compared with 438 proteins and 53 metabolites at T2. The proteins and metabolites related to photosynthesis and antioxidant systems in chloroplasts and mitochondria were disproportionally affected by S. rolfsii infection, impacting carbohydrate and amino acid metabolism. This study provided new insights into the response mechanism in pepper stems during S. rolfsii infection, which can guide future work on fungal disease resistance breeding in pepper.

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  • Sensitivity determination and resistance mechanism of Sclerotium rolfsii to difenoconazole
    Chaofan Jiang, Lin Zhou, Mengke Wang, Sirui Shen, Weifeng Cheng, Qingchen Zhao, Kaidi Cui, Leiming He
    Pest Management Science.2025; 81(6): 2734.     CrossRef
  • The “Coexistence” of Ehrlich pathway and de novo pathway improves 2-PE synthesis in Saccharomyces cerevisiae
    Chenghan Yang, Qingqing Lv, Li Zhang, Huining Jia, Hailong Chen, Sainan Yang, Yuxin Qiu, Haifeng Hang, Ali Mohsin, Ju Chu, Yingping Zhuang, Xiwei Tian
    Chemical Engineering Journal.2025; 516: 163688.     CrossRef
  • Effects of fungicide application on susceptible pepper cultivar under southern blight stress
    Rong Wen, Dandan Song, Chuanjing Liang, Gratien Twagirayezu, Yongping Wang, Dehui Tu, Zhenyi Luo, Shicai Zhang, Dan Xing, Zhibing Wu, Kangyun Wu
    Scientia Horticulturae.2025; 342: 114030.     CrossRef
  • Multifaceted chemical and bioactive features of Ag@TiO2 and Ag@SeO2 core/shell nanoparticles biosynthesized using Beta vulgaris L. extract
    Khaled M. Elattar, Fatimah O. Al-Otibi, Mohammed S. El-Hersh, Attia A. Attia, Noha M. Eldadamony, Ashraf Elsayed, Farid Menaa, WesamEldin I.A. Saber
    Heliyon.2024; 10(7): e28359.     CrossRef
  • Fighting for Survival at the Stomatal Gate
    Maeli Melotto, Brianna Fochs, Zachariah Jaramillo, Olivier Rodrigues
    Annual Review of Plant Biology .2024; 75(1): 551.     CrossRef
  • Zinc and Boron Soil Applications Affect Athelia rolfsii Stress Response in Sugar Beet (Beta vulgaris L.) Plants
    Tamalika Bhadra, Chandan Kumar Mahapatra, Md. Hosenuzzaman, Dipali Rani Gupta, Abeer Hashem, Graciela Dolores Avila-Quezada, Elsayed Fathi Abd_Allah, Md. Anamul Hoque, Swapan Kumar Paul
    Plants.2023; 12(19): 3509.     CrossRef
  • Genetic Regulation, Environmental Cues, and Extraction Methods for Higher Yield of Secondary Metabolites in Capsicum
    Khushbu Islam, Abdul Rawoof, Ajay Kumar, John Momo, Ilyas Ahmed, Meenakshi Dubey, Nirala Ramchiary
    Journal of Agricultural and Food Chemistry.2023; 71(24): 9213.     CrossRef
  • Integrated pathological, proteomic and metabolomic analyses reveal significant changes of Eriocheir sinensis hepatopancreatic in response to the microsporidian Hepatospora eriocheir infection
    Libo Hou, Mengdi Wang, Hao Li, Lei Zhu, Xianghui Kong, Wei Gu, Keran Bi, Jie Du, Qingguo Meng
    Aquaculture.2023; 577: 739994.     CrossRef
Geographic diversity in Helicobacter pylori oipA genotype between Korean and United States isolates
Aeryun Kim , Jing Lai , D. Scott Merrell , Ji-Hye Kim , Hanfu Su , Jeong-Heon Cha
J. Microbiol. 2021;59(12):1125-1132.   Published online October 31, 2021
DOI: https://doi.org/10.1007/s12275-021-1450-8
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AbstractAbstract PDF
Helicobacter pylori outer membrane inflammatory protein A (OipA) was originally named for its role in inducing inflammation in the host, as evidenced by high mucosal IL-8 levels. Expression of OipA is regulated by phase variation of a CT dinucleotide-repeat located in the 5􍿁􀁇region of the gene. However, little is known about OipA geographic diversity across isolates. To address this gap, we conducted a large-scale molecular epidemiologic analysis using H. pylori clinical isolates obtained from two geographically distinct populations: Korea and the United States (US). Most Korean isolates (98.7%) possessed two copies of oipA located at two specific loci (A and B) while all US isolates contained only one copy of oipA at locus A. Furthermore, most Korean oipA (94.8%) possessed three or less CT repeats while most US oipA (96.6%) contained five or more CT repeats. Among the two copies, all Korean H. pylori possessed at least one oipA ‘on’ phase variant while the single copy of oipA in US isolates showed 56.2% ‘on’ and 43.8% ‘off.’ Thus, host differences seem to have driven geographic diversification of H. pylori across these populations such that OipA expression in US isolates is still regulated by phase variation with 5 or more CT repeats, while Korean isolates always express OipA; duplication of the oipA combined with a reduction of CT repeats to three or less ensures continued expression. En masse, these findings suggest that diversity in the oipA gene copy number, CT repeats, and phase variation among H. pylori from different populations may confer a benefit in adaptation to particular host populations.

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  • Pathogenicity and virulence of Helicobacter pylori : A paradigm of chronic infection
    Marguerite Clyne, Tadhg Ó Cróinín
    Virulence.2025;[Epub]     CrossRef
  • Genetic diversity of the oipA gene among Helicobacter pylori isolates and clinical outcome in Vietnam
    Thi Hong Nhung Thai, Hong Phong Nguyen, Thi Hai Yen Nguyen, Thi Be Hai Nguyen, Thai Hoa Nguyen, Thi Mai Ngan Nguyen, Thi Minh Thi Ha
    Infection, Genetics and Evolution.2023; 112: 105438.     CrossRef
  • Characterization of East-Asian Helicobacter pylori encoding Western EPIYA-ABC CagA
    Kavinda Tissera, Myeong-A Kim, Jing Lai, Sacheera Angulmaduwa, Aeryun Kim, D. Scott Merrell, Ji-Hye Kim, Hanfu Su, Jeong-Heon Cha
    Journal of Microbiology.2022; 60(2): 207.     CrossRef
CagL polymorphisms between East Asian and Western Helicobacter pylori are associated with different abilities to induce IL-8 secretion
Yun Hui Choi , Jing Lai , Myeong-A Kim , Aeryun Kim , Jinmoon Kim , Hanfu Su , Linhu Ge , Jeong-Heon Cha
J. Microbiol. 2021;59(8):763-770.   Published online June 1, 2021
DOI: https://doi.org/10.1007/s12275-021-1136-2
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AbstractAbstract PDF
Helicobacter pylori colonizes human gastric mucosa. Its infection is associated with gastric diseases including gastric cancer. CagA is one of the most important toxins produced by H. pylori. It is related to gastric cancer which can be injected into host cells via a type IV secretion system (T4SS). CagL is a structural component of T4SS apparatus, which triggers host cell signaling pathway. It has been reported that CagL polymorphisms may influence the severity of disease development. To explore the contribution of CagL polymorphisms between East Asian and Western H. pylori in pathogenesis, cagL gene in G27 H. pylori was swapped by K74 cagL which is identical to East Asian CagL consensus sequence and by Western 26695 H. pylori, resulting in G27ΔcagL/cagLK74 and G27ΔcagL/cagL26695, respectively. Intriguingly, G27ΔcagL/ cagLK74 showed significantly less ability of IL-8 induction than G27ΔcagL/cagL26695 while displayed similar abilities of CagA phosphorylation, and cell elongation. Taken together, this study suggests that the CagL polymorphism may influence IL-8 induction, and K74 CagL has less ability to induce IL-8 secretion than G27 or 26695 CagL. Further research should address how the different capabilities of IL-8 induction between intraspecies-CagL are associated with the large differences of the incidence of gastric cancer between East Asian and Western countries.

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  • Roles of the components of the cag -pathogenicity island encoded type IV secretion system in Helicobacter pylori
    Lingzhu Gou, Xiaoping Yang, Jianwei Yun, Zenghui Ma, Xiaofeng Zheng, Hongwei Du, Dekui Zhang
    Future Microbiology.2024; 19(14): 1253.     CrossRef
  • Antibacterial and Immunoregulatory Effects of Metformin against Helicobacter pylori Infection in Rat Model
    Hassan Valadbeigi, Saeed Khoshnood, Babak Negahdari, Mohd Azmuddin Abdullah, Mohammad Hossein Haddadi, Abhimanyu Abhimanyu
    BioMed Research International.2023;[Epub]     CrossRef
  • New CagL Amino Acid Polymorphism Patterns of Helicobacter pylori in Peptic Ulcer and Non-Ulcer Dyspepsia
    Reyhan Caliskan, Silva Polat Sari, Bahadir Ercan, Kivanc Derya Peker, Mehtap Omac Sonmez, Ozer Akgul, Burcu Sapmaz, Aliye Soylu, Gokhan Tolga Adas, Yasar Ali Oner, Pelin Yuksel Mayda
    Medicina.2022; 58(12): 1738.     CrossRef
  • Geographic diversity in Helicobacter pylori oipA genotype between Korean and United States isolates
    Aeryun Kim, Jing Lai, D. Scott Merrell, Ji-Hye Kim, Hanfu Su, Jeong-Heon Cha
    Journal of Microbiology.2021; 59(12): 1125.     CrossRef
Parahaliea maris sp. nov., isolated from surface seawater and emended description of the genus Parahaliea
Yang Liu , Juan Du , Jun Zhang , Qiliang Lai , Zongze Shao , Honghui Zhu
J. Microbiol. 2020;58(2):92-98.   Published online January 29, 2020
DOI: https://doi.org/10.1007/s12275-020-9405-z
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AbstractAbstract PDF
A Gram-stain-negative, strictly aerobic, short-rod-shaped, and non-motile bacterial strain designated HSLHS9T was isolated from surface seawater collected from the South China Sea. Strain HSLHS9T could grow at 15–41°C (optimum 28°C), at pH 5.0–9.0 (optimum 6.0–7.0), and in 0–7% (w/v) NaCl (optimum 2–3%). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain HSLHS9T shared high identities with the closely related Parahaliea aestuarii S2-26T (98.6%) and Parahaliea mediterranea 7SM29T (97.8%) and formed a distinct lineage within the genus Parahaliea. Wholegenome sequencing of strain HSLHS9T revealed the size of 4.8 Mbp and DNA G + C content of 61.8 mol%. Strain HSLHS9T shared the digital DNA-DNA hybridization values of 22.4% and 23.0%, and the average nucleotide identities of 79.7% and 79.9%, respectively, with the two type strains above. The predominant cellular fatty acids of the strain were summed feature 8 (C18:1 ω6c and/or C18:1 ω7c), summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C17:1 ω8c, and C16:0. The sole isoprenoid quinone was identified as Q-8. The polar lipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, aminolipid, and two glycolipids. Based on taxonomic data obtained in this study, it is suggested that strain HSLHS9T represents a novel species of the genus Parahaliea, for which the name Parahaliea maris sp. nov. is proposed. The type strain is HSLHS9T (= MCCC 1A06717T = KCTC 52307T). An emended description of the genus Parahaliea is also provided.

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    International Biodeterioration & Biodegradation.2024; 190: 105767.     CrossRef
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    Science of The Total Environment.2024; 933: 172995.     CrossRef
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    Journal of Microbiology.2022; 60(2): 137.     CrossRef
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    Shan Jiang, Feng-Bai Lian, You-Yang Sun, Xiao-Kui Zhang, Zong-Jun Du
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  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 2960.     CrossRef
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    Aharon Oren, George Garrity
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4061.     CrossRef
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    Shan-Hui Li, Jaeho Song, Ilnam Kang, Juchan Hwang, Jang-Cheon Cho
    Journal of Microbiology.2020; 58(6): 463.     CrossRef
Mucilaginibacter limnophilus sp. nov., isolated from a lake
Shih-Yi Sheu , Yi-Ru Xie , Wen-Ming Chen
J. Microbiol. 2019;57(11):967-975.   Published online August 28, 2019
DOI: https://doi.org/10.1007/s12275-019-9146-z
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AbstractAbstract PDF
A polyphasic taxonomy approach was used to characterize strain YBJ-36T, isolated from a freshwater lake in Taiwan. Phylogenetic analyses, based on 16S rRNA gene sequences and coding sequences of an up-to-date bacterial core gene set (92 protein clusters), indicated that strain YBJ-36T formed a phylogenetic lineage in the genus Mucilaginibacter. 16S rRNA gene sequence similarity indicated that strain YBJ-36T is closely related to species within the genus Mucilaginibacter (93.8–97.8% sequence similarity) and is most similar to Mucilaginibacter fluminis TTM-2T (97.8%), followed by Mucilaginibacter roseus TTM-1T (97.2%). Microbiological analyses demonstrated that strain YBJ-36T is Gram-negative, aerobic, non-motile, rod-shaped, surrounded by a thick capsule, and forms pink-colored colonies. Strain YBJ-36T grew between 20–40°C (optimal range, 35–37°C), pH 5.5–7.0 (optimal pH of 6) and 0–2% NaCl (optimal concentration, 0.5%). The predominant fatty acids of strain YBJ-36T are iso-C15:0 and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), the major polar lipid is phosphatidylethanolamine, the major polyamine is homospermidine, and the major isoprenoid quinone is MK-7. The draft genome is approximately 4.63 Mb in size with a G+C content of 42.8 mol%. Strain YBJ-36T exhibited less than 35% DNA-DNA relatedness with Mucilaginibacter fluminis TTM-2T and Mucilaginibacter roseus TTM-1T. Based on phenotypic and genotypic properties and phylogenetic inference, strain YBJ-36T should be classified in a novel species of the genus Mucilaginibacter, for which the name Mucilaginibacter limnophilus sp. nov. is proposed. The type strain is YBJ-36T (= BCRC 81056T = KCTC 52811T = LMG 30058T).

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  • Complete genomes of Mucilaginibacter sabulilitoris SNA2 and Mucilaginibacter sp. cycad4: microbes with the potential for plant growth promotion
    Ann M. Hirsch, Ethan Humm, Liudmilla Rubbi, Giorgia Del Vecchio, Sung Min Ha, Matteo Pellegrini, Robert P. Gunsalus, Leighton Pritchard
    Microbiology Resource Announcements.2025;[Epub]     CrossRef
  • Mucilaginibacter sp. Strain Metal(loid) and Antibiotic Resistance Isolated from Estuarine Soil Contaminated Mine Tailing from the Fundão Dam
    Ana L. S. Vasconcelos, Fernando Dini Andreote, Thaiane Defalco, Endrews Delbaje, Leticia Barrientos, Armando C. F. Dias, Fabricio Angelo Gabriel, Angelo F. Bernardino, Kattia Núñez-Montero
    Genes.2022; 13(2): 174.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George Garrity
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1443.     CrossRef
  • Reclassification of genus Izhakiella into the family Erwiniaceae based on phylogenetic and genomic analyses
    Lingmin Jiang, Dexin Wang, Ji-Sun Kim, Ju Huck Lee, Dae-Hyuk Kim, Suk Weon Kim, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3541.     CrossRef
Paenibacillus psychroresistens sp. nov., isolated from the soil of an Arctic glacial retreat
In-Tae Cha , Eui-Sang Cho , Yoo Kyung Lee , Seong Woon Roh , Myung-Ji Seo
J. Microbiol. 2019;57(7):569-574.   Published online June 27, 2019
DOI: https://doi.org/10.1007/s12275-019-8666-x
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AbstractAbstract PDF
Strain ML311-T8T was isolated from a glacial retreat area in Svalbard, Norway, and was taxonomically characterized by a polyphasic approach. Upon phylogenetic analysis, strain ML311-T8T was clustered with Paenibacillus arcticus MME2_ R6T and P. contaminans CKOBP-6T with 98.3–98.6 and 93.5– 93.9% 16S rRNA gene sequence similarities, respectively. DNA-DNA hybridization values between strain ML311-T8T and P. arcticus MME2_R6T was 19.9%. The genomic DNA G+C content was 41.1 mol%. The isolated strain was Gramstain- positive, strictly aerobic and rod-shaped, and grew in 0–0.5% (w/v) NaCl, at 4–23°C and pH 6.0–10.0, with optimal growth in 0% (w/v) NaCl, at 20°C and pH 7.0–8.0. The predominant respiratory quinone of strain ML311-T8T was MK- 7 and the major fatty acids were anteiso-C15:0 and C16:0. The polar lipids of strain ML311-T8T were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, three unidentified amino lipids, and three unidentified lipids. On the basis of polyphasic taxonomic analysis, the strain ML311-T8T is proposed to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus psychroresistens sp. nov. is proposed. The type strain is ML311-T8T (= KCCM 43190T = JCM 31243T).

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    Maikel Gilberto Fernández-López, Ayixon Sánchez-Reyes, Marcos Eduardo Rosas-Ramírez, Edgar Balcázar-López
    Water, Air, & Soil Pollution.2024;[Epub]     CrossRef
  • Paenibacillus dendrobii sp. nov., an indole-3-acetic acid-producing endophytic bacterium isolated from Dendrobium nobile
    Yadong Hu, Hongjie Li, Yaoyi Chen, Qiling Zhang, Shigang Zheng, Dan Rao, Ze Chun, Ruoxi Zhao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Validation List no. 206. Valid publication of new names and new combinations effectively published outside the IJSEM
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    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Description of Paenibacillus dokdonensis sp. nov., a new bacterium isolated from soil
    Jayoung Paek, Lu Bai, Yeseul Shin, Hongik Kim, Joong-Ki Kook, Young-Hyo Chang
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
Paracoccus jeotgali sp. nov., isolated from Korean salted and fermented shrimp
Juseok Kim , Joon Yong Kim , Hye Seon Song , In-Tae Cha , Seong Woon Roh , Se Hee Lee
J. Microbiol. 2019;57(6):444-449.   Published online May 27, 2019
DOI: https://doi.org/10.1007/s12275-019-8704-8
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A Gram-stain-negative and facultatively aerobic bacterium, designated as strain CBA4604T, was isolated from a traditional Korean salted and fermented shrimp food (saeu-jeot). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain CBA4604T formed a clearly distinct phyletic lineage from closely related species within the genus Paracoccus. Strain CBA4604T was the most closely related to P. koreensis Ch05T (97.5% 16S rRNA gene sequence similarity) and other type strains (≤ 97.0%). The genome comprised a chromosome and two plasmids of 3,299,166 bp with 66.5% G+C content. The DNA-DNA relatedness values between strain CBA4604T and P. koreensis Ch05T, P. alcaliphilus DSM 8512T, and P. stylophorae KTW-16T were 30.5%, 22.9%, and 16.7%, respectively. Cells of the strain were short rod-shaped and oxidase- and catalase-positive. The growth of strain CBA- 4604T was observed at 10–40°C (optimum, 37°C), pH 6.0–10.0 (optimum, pH 7.0), and in the presence of 0–8.0% (w/v) NaCl (optimum, 0–2.0%). Strain CBA4604T contained ubiquinone 10 as the sole isoprenoid quinone and summed feature 8 (C18:1 ω7c/C18:1 ω6c) and C18:0 as the major cellular fatty acids. The polar lipids consisted of phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, phospholipid, an unidentified aminolipid, an unidentified glycolipid, and three unidentified lipids. Based on its phylogenetic, genomic, phenotypic, and chemotaxonomic features, we concluded that strain CBA- 4604T represents a novel species in the genus Paracoccus and we propose the name Paracoccus jeotgali sp. nov. The type strain is CBA4604T (= KACC 19579T = JCM 32510T).

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    Juseok Kim, Hye Seon Song, Joon Yong Kim, Tae Woong Whon, Won-Hyong Chung, Young-Do Nam, Yoon-E Choi, Seong Woon Roh
    International Journal of Systematic and Evolutionary Microbiology.2023;[Epub]     CrossRef
  • ODFM, an omics data resource from microorganisms associated with fermented foods
    Tae Woong Whon, Seung Woo Ahn, Sungjin Yang, Joon Yong Kim, Yeon Bee Kim, Yujin Kim, Ji-Man Hong, Hojin Jung, Yoon-E Choi, Se Hee Lee, Seong Woon Roh
    Scientific Data.2021;[Epub]     CrossRef
  • Flaviflexus ciconiae sp. nov., isolated from the faeces of the oriental stork, Ciconia boyciana
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    International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5439.     CrossRef
  • Paracoccus aeridis sp. nov., an indole-producing bacterium isolated from the rhizosphere of an orchid, Aerides maculosa
    Anusha Rai, Smita N, Suresh G, Shabbir A, Deepshikha G, Sasikala Ch, Ramana Ch.V
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1720.     CrossRef
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    Bing Wang, Zhiqiang Sun, Zhu Yu
    Microorganisms.2020; 8(4): 488.     CrossRef
  • Iodobacter ciconiae sp. nov., a bacterium isolated from feces of oriental stork, Ciconia boyciana
    Jae-Yun Lee, Woorim Kang, Pil Soo Kim, So-Yeon Lee, Na-Ri Shin, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Yun-Seok Jeong, Jeong Eun Han, Mi-Ja Jung, Dong-Wook Hyun, Hyun Sik Kim, Euon Jung Tak, Myung-Suk Kang, Ki-Eun Lee, Byoung-Hee Lee, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(9): 2948.     CrossRef
Edaphovirga cremea gen. nov., sp. nov., isolated from the rhizospheric soil of Codonopsis clematidea
Jin-Yan Xue , Meng-Yue Zhang , Yu Zhang , Juan Cheng , Li-Cheng Liu , Ying-Ying Wu , Tian-Yuan Zhang , Yi-Xuan Zhang
J. Microbiol. 2019;57(5):337-342.   Published online February 26, 2019
DOI: https://doi.org/10.1007/s12275-019-8408-0
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AbstractAbstract PDF
A Gram-negative, facultatively anaerobic, non-motile, nonspore- forming, coccoid or rod-shaped and creamy-pigmented bacterium, designated SYP-B2100T, was isolated from the rhizospheric soil of Codonopsis clematidea in the Xinjiang Uygur Autonomous Region, China. The optimal growth occurred at 28°C, pH 5.0, in the absence of NaCl. The cells tested positive in catalase and methyl red tests but negative in oxidase, urease, gelatinase, milk coagulation, and peptonisation, H2S production, nitrate reduction, and Voges-Proskauer tests. The major isoprenoid quinone was ubiquinone-8 (Q-8). The major cellular fatty acids were C16:0 and summed feature 8. The polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol. The 16S rRNA gene sequence of strain SYP-B2100T was the most similar to that of Rahnella inusitata DSM 30078T (96.9%) within the family Enterobacteriaceae. The genomic DNA G+C content of strain SYP-B2100T was 50.3 mol%. The combined data from the phylogenetic, morphological, physiological, biochemical, and chemotaxonomic analyses presented in this study support the conclusion that strain SYP-B2100T represents a novel species of a new genus, for which the name Edaphovirga cremea gen. nov., sp. nov. is proposed; the type strain is SYPB2100T (= CGMCC 1.5857T = DSM 105170T = KCTC 62024T).

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    Lingmin Jiang, Dexin Wang, Jung-Sook Lee, Dae-Hyuk Kim, Jae Cheol Jeong, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
    Journal of Microbiology.2020; 58(5): 357.     CrossRef
Flavisolibacter aluminii sp. nov., a novel member of the genus Flavisolibacter isolated from an automotive air conditioning system
Hyosun Lee , Dong-Uk Kim , Suyeon Lee , Song-Gun Kim , A-Young Park , Jae-Hyung Ahn , Jong-Ok Ka
J. Microbiol. 2019;57(1):18-22.   Published online November 19, 2018
DOI: https://doi.org/10.1007/s12275-019-8219-3
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AbstractAbstract PDF
A Gram-stain-negative, aerobic, non-motile, rod-shaped, and yellow-pigmented bacterium, designated strain ID1709T, was isolated from an automotive air conditioning system collected in Korea. Analysis of 16S rRNA gene sequence similarity showed that strain ID1709T had 92.2–94.3% similarities with the type strains of members of the genus Flavisolibacter. The major cellular fatty acids were iso-C15:0, iso-C15:1 G, iso-C17:0 3-OH, and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c). The predominant respiratory quinone was MK-7. The polar lipids comprised phosphatidylethanolamine, aminoglycophospholipid, two unidentified aminolipids, and three unidentified lipids. The DNA G + C content of the strain was 35.6 mol%. Based on phenotypic, chemotaxonomic, and genotypic data, strain ID1709T represents a novel species in the genus Flavisolibacter, for which the name Flavisolibacter aluminii sp. nov. (= KACC 19451T = KCTC 52778T = NBRC 112870T), is proposed.

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  • Insights into the Response and Evolution of Microbial Communities During Long-Term Natural Remediation of Contaminated Abandoned Shale Gas Wells
    Hongyang Ren, Shuangli Chen, Jiajian Shang, Yujia Gao, Yuanpeng Deng, Zhaoyang Wang, Guojun Hu, Bing Wang
    Water, Air, & Soil Pollution.2024;[Epub]     CrossRef
  • Metallococcus carri gen. nov., sp. nov., a novel member of the family Dermacoccaceae isolated from an automotive air conditioning system
    Jong Sung Lim, Hyosun Lee, Jigwan Son, Song-Gun Kim, Dong-Uk Kim, Jong-Ok Ka
    Archives of Microbiology.2021; 203(7): 4073.     CrossRef
Brevibacterium anseongense sp. nov., isolated from soil of ginseng field
Mi-Seon Jung , Xiao-Tian Quan , Muhammad Zubair Siddiqi , Qingzhen Liu , Sang Yong Kim , Ji-Hyang Wee , Wan Taek Im
J. Microbiol. 2018;56(10):706-712.   Published online August 22, 2018
DOI: https://doi.org/10.1007/s12275-018-8181-5
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AbstractAbstract PDF
A Gram-positive, aerobic, non-motile, pale-yellow, and rodshaped bacterium, designated as Gsoil 188T, was isolated from the soil of a ginseng field in Pocheon, South Korea. A phylogenetic analysis based on 16S rRNA gene sequence comparison revealed that the strain formed a distinct lineage within the genus Brevibacterium and was most closely related to B. epidermidis NBRC 14811T (98.4%), B. sediminis FXJ8.269T (98.2%), B. avium NCFB 3055T (98.1%), and B. oceani BBH7T (98.1%), while it shared less than 98.1% identity with the other species of this genus. The DNA G + C content was 68.1 mol%. The predominant quinone was MK-8(H2). The major fatty acids were anteiso-C15:0 and anteiso-C17:0. The cell wall peptidoglycan of strain Gsoil 188T contained meso-diaminopimelic acid. The major polar lipids were phosphatidylglycerol, diphosphatidylglycerol, and an unidentified aminolipid. The physiological and biochemical characteristics, low DNA-DNA relatedness values, and taxonomic analysis allowed the differentiation of strain Gsoil 188T from the other recognized species of the genus Brevibacterium. Therefore, strain Gsoil 188T represents a novel species of the genus Brevibacterium, for which the name Brevibacterium anseongense sp. nov. is proposed, with the type strain Gsoil 188T (= KACC 19439T = LMG 30331T).

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    Quan Yang, Aolin Zhao, Haifei Liu, Jiawei Li, Shujing Wu, Ying Huang, Jie Weng, Mingguo Jiang, Yi Jiang
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
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    Yuyuan Huang, Lingzhi Dong, Jian Gong, Jing Yang, Shan Lu, Xin-He Lai, Dong Jin, Qianni Huang, Ji Pu, Liyun Liu, Jianguo Xu
    Journal of Microbiology.2022; 60(10): 977.     CrossRef
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    Journal of Microbiology.2022; 60(6): 576.     CrossRef
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    Archives of Microbiology.2021; 203(5): 2291.     CrossRef
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Leifsonia flava sp. nov., a novel actinobacterium isolated from the rhizosphere of Aquilegia viridiflora
Ying Cai , Wen-Zhen Tao , Yu-Jun Ma , Juan Cheng , Meng-Yue Zhang , Yi-Xuan Zhang
J. Microbiol. 2018;56(8):549-555.   Published online July 25, 2018
DOI: https://doi.org/10.1007/s12275-018-8061-z
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AbstractAbstract PDF
SYP-B2174T is a yellow-pigmented, Gram-positive, non-motile, and rod-shaped actinobacterium isolated from the rhizospheric soil of Aquilegia viridiflora Pall. collected from the Xinjiang uygur autonomous region of China. The strain’s growth temperature ranges from 1 to 35°C, with an optimal growth being observed at 28°C. Growth occurs from 0 to 5% NaCl and at pH 6–8, with optimal growth being observed in 1% NaCl at pH 7. Comparative 16S rRNA gene sequencebased phylogenetic analysis placed the strain in a clade with the species Leifsonia kafniensis JCM 17021T and Leifsonia psychrotolerans DSM 22824T with similarities of 97.8 and 97.6%, respectively. The DNA-DNA hybridization values of the strain SYP-B2174T to its closest phylogenetic neighbors were significantly lower than 35.7%. The strain was identified as a novel species of the genus Leifsonia judging by the coryneform morphology, peptidoglycans based upon 2,4-diaminobutyric acid, principal phospholipids phosphatidylglycerol and diphosphatidylglycerol, major menaquinone MK-11, predominant fatty acids of anteiso-C15:0, anteiso-C17:0, and iso-C16:0, and a DNA G + C base composition of 68.7 mol%, for which the name Leifsonia flava sp. nov. is proposed. The type strain is SYP-B2174T (= CGMCC 1.15856T = DSM 105144T = KCTC 39963T).

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  • Leifsonia stereocauli sp. nov., Isolated from Stereocaulon tomentosum Fr. Lichen
    Shu-Ya Zuo, Lian-Shuang Xiong, Qing Yuan, Guo-Hua Chen, Rui Yang, Li-Song Wang, Cheng-Lin Jiang, Xin-Yu Wang, Yi Jiang
    Current Microbiology.2025;[Epub]     CrossRef
  • Taxonomic rearrangement of Salinibacterium, Leifsonia, Diaminobutyricibacter, Antiquaquibacter, Homoserinimonas and Glaciibacter: refining genus boundaries and proposal of two new genera – Orlajensenia gen. nov. and Leifsonella gen. nov.
    Maher Gtari, Dhouha Boussoufa, Faten Ghodhbane-Gtari, Imed Sbissi
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Validation list no. 225: valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, Markus Göker
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Enhancement of the germination and growth of Panicum miliaceum and Brassica juncea in Cd- and Zn-contaminated soil inoculated with heavy-metal-tolerant Leifsonia sp. ZP3
    Ian Cho, Soo Yeon Lee, Kyung-Suk Cho
    World Journal of Microbiology and Biotechnology.2024;[Epub]     CrossRef
  • Plant Growth-Promoting and Tequila Vinasse-Resistant Bacterial Strains
    Alberto J. Valencia-Botín, Ismael F. Chávez-Díaz, Florentina Zurita-Martínez, Allan Tejeda-Ortega, Lily X. Zelaya-Molina
    Microbiology Research.2024; 15(3): 1144.     CrossRef
  • Phylogenomics, phenotypic, and functional traits of five novel (Earth-derived) bacterial species isolated from the International Space Station and their prevalence in metagenomes
    Anna C. Simpson, Pratyay Sengupta, Flora Zhang, Asif Hameed, Ceth W. Parker, Nitin K. Singh, Georgios Miliotis, Punchappady D. Rekha, Karthik Raman, Christopher E. Mason, Kasthuri Venkateswaran
    Scientific Reports.2023;[Epub]     CrossRef
  • Diversity of Culturable Bacteria Isolated from Highland Barley Cultivation Soil in Qamdo, Tibet Autonomous Region
    HU PAN, JIE ZHOU, ZHUOMA DAWA, YANNA DAI, YIFAN ZHANG, HUI YANG, CHONG WANG, HUHU LIU, HUI ZHOU, XIANGYANG LU, YUN TIAN
    Polish Journal of Microbiology.2021; 70(1): 87.     CrossRef
  • Unlocking the potential of plant growth-promoting rhizobacteria on soil health and the sustainability of agricultural systems
    Zobia Khatoon, Suiliang Huang, Mazhar Rafique, Ali Fakhar, Muhammad Aqeel Kamran, Gustavo Santoyo
    Journal of Environmental Management.2020; 273: 111118.     CrossRef
  • Notification of changes in taxonomic opinion previously published outside the IJSEM
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    International Journal of Systematic and Evolutionary Microbiology.2019; 69(1): 13.     CrossRef
Halomonas tibetensis sp. nov., isolated from saline lakes on Tibetan Plateau
Hui-bin Lu , Peng Xing , Lei Zhai , Dorji Phurbu , Qian Tang , Qing-long Wu
J. Microbiol. 2018;56(7):493-499.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-8076-5
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AbstractAbstract PDF
Strains pyc13T and ZGT13 were isolated from Lake Pengyan and Lake Zigetang on Tibetan Plateau, respectively. Both strains were Gram-negative, catalase- and oxidase-positive, aerobic, rod-shaped, nonmotile, and nonflagellated bacteria. Phylogenetic analysis based on 16S rRNA gene sequences showed that strains pyc13T and ZGT13 belong to the genus Halomonas, with Halomonas alkalicola 56-L4-10aEnT as their closest neighbor, showing 97.4% 16S rRNA gene sequence similarity. The predominant respiratory quinone of both strains was Q-9, with Q-8 as a minor component. The major fatty acids of both strains were C18:1 ω6c/C18:1 ω7c, C16:1 ω6c/C16:1 ω7c, C16:0, and C12:0 3OH. The polar lipids of both strains consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, glycolipid, phospholipids of unknown structure containing glucosamine, and unidentified phospholipids. The DNA G + C content of pyc13T and ZGT13 were 62.6 and 63.4 mol%, respectively. The DNA-DNA hybridization values of strain pyc13T were 34, 41, 61, 35, and 35% with the reference strains H. alkalicola 56-L4-10aEnT, H. sediminicola CPS11T, H. mongoliensis Z-7009T, H. ventosae Al12T, and H. fontilapidosi 5CRT, respectively. Phenotypic, biochemical, genotypic, and DNA-DNA hybridization data showed that strains pyc13T and ZGT13 represent a new species within the genus Halomonas, for which the name H. tibetensis sp. nov. is proposed. The type strain is pyc13T (= CGMCC 1.15949T = KCTC 52660T).

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  • The Bacterial Microbiota of Artisanal Cheeses from the Northern Caucasus
    Tatiana V. Kochetkova, Ilya P. Grabarnik, Alexandra A. Klyukina, Kseniya S. Zayulina, Liliya A. Gavirova, Polina A. Shcherbakova, Gennady S. Kachmazov, Andrey I. Shestakov, Ilya V. Kublanov, Alexander G. Elcheninov
    Fermentation.2023; 9(8): 719.     CrossRef
  • Halomonas profundi sp. nov., isolated from deep-sea sediment of the Mariana Trench
    Fan Wang, Jin-Jian Wan, Xi-Ying Zhang, Yu Xin, Mei-Ling Sun, Peng Wang, Wei-Peng Zhang, Ji-Wei Tian, Yu-Zhong Zhang, Chun-Yang Li, Hui-Hui Fu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Halomonas jincaotanensis sp. nov., isolated from the Pamir Plateau degrading polycyclic aromatic hydrocarbon
    Xuying Bu, Zhanfeng Xia, Zhanwen Liu, Min Ren, Chuanxing Wan, Lili Zhang
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Halomonas rituensis sp. nov. and Halomonas zhuhanensis sp. nov., isolated from natural salt marsh sediment on the Tibetan Plateau
    Peixin Gao, Huibin Lu, Peng Xing, Qinglong L. Wu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5217.     CrossRef
  • Halomonas montanilacus sp. nov., isolated from hypersaline Lake Pengyanco on the Tibetan Plateau
    Huibin Lu, Peng Xing, Lei Zhai, Huabing Li, Qinglong Wu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2859.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(11): 3379.     CrossRef
Taxonomic description and draft genome of Pseudomonas sediminis sp. nov., isolated from the rhizospheric sediment of Phragmites karka
Pratiksha Behera , Madhusmita Mahapatra , Arman Seuylemezian , Parag Vaishampayan , V. Venkata Ramana , Neetha Joseph , Amaraja Joshi , Yogesh Shouche , Mrutyunjay Suar , Ajit K. Pattnaik , Gurdeep Rastogi
J. Microbiol. 2018;56(7):458-466.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-7549-x
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AbstractAbstract PDF
The taxonomic position of a Gram-stain-negative, rod-shaped bacterial strain, designated PI11T , isolated from the rhizospheric sediment of Phragmites karka was characterized using a polyphasic approach. Strain PI11T could grow optimally at 1.0% NaCl concentration with pH 7.0 at 30°C and was positive for oxidase and catalase but negative for hydrolysis of starch, casein, and esculin ferric citrate. Phylogenetic analysis of 16S rRNA gene sequences indicated that the strain PI11T belonged to the genus Pseudomonas sharing the highest sequence similarities with Pseudomonas indoloxydans JCM 14246T (99.72%), followed by, Pseudomonas oleovorans subsp. oleovorans DSM 1045T (99.29%), Pseudomonas toyotomiensis JCM 15604T (99.15%), Pseudomonas chengduensis DSM 26382T (99.08%), Pseudomonas oleovorans subsp. lubricantis DSM 21016T (99.08%), and Pseudomonas alcaliphila JCM 10630T (99.01%). Experimental DNA-DNA relatedness between strain PI11T and P. indoloxydans JCM 14246T was 49.4%. The draft genome of strain PI11T consisted of 4,884,839 bp. Average nucleotide identity between the genome of strain PI11T and other closely related type strains ranged between 77.25–90.74%. The polar lipid pattern comprised of phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylcholine. The major (> 10%) cellular fatty acids were C18:1 ω6c/ω7c, C16:1 ω6c/ω7c, and C16:0. The DNA G + C content of strain PI11T was 62.4 mol%. Based on the results of polyphasic analysis, strain PI11T was delineated from other closely related type strains. It is proposed that strain PI11T represents a novel species of the genus Pseudomonas, for which the name Pseudomonas sediminis sp. nov. is proposed. The type strain is PI11T (= KCTC 42576T = DSMZ 100245T).

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    Water.2025; 17(4): 502.     CrossRef
  • Phylogenomics studies and molecular markers reliably demarcate genus Pseudomonas sensu stricto and twelve other Pseudomonadaceae species clades representing novel and emended genera
    Bashudev Rudra, Radhey S. Gupta
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Plant growth-promoting characteristics of halotolerant endophytic bacteria isolated from Sporobolus specatus (Vahr) Kunth and Cyperus laevigatus L. of Ethiopian rift valley lakes
    Solomon Enquahone, Guido van Marle, Addis Simachew
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Haloferax litoreum sp. nov., Haloferax marinisediminis sp. nov., and Haloferax marinum sp. nov., low salt-tolerant haloarchaea isolated from seawater and sediment
    Eui-Sang Cho, In-Tae Cha, Seong Woon Roh, Myung-Ji Seo
    Antonie van Leeuwenhoek.2021; 114(12): 2065.     CrossRef
  • Pseudomonas carbonaria sp. nov., isolated from charcoal
    Peter Kämpfer, S. P. Glaeser, John A. McInroy, Dominique Clermont, Alexis Criscuolo, Hans-Jürgen Busse
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Haloplanus rubicundus sp. nov., an extremely halophilic archaeon isolated from solar salt
    Yeon Bee Kim, Joon Yong Kim, Hye Seon Song, Se Hee Lee, Na-Ri Shin, Jin-Woo Bae, Jinjong Myoung, Ki-Eun Lee, In-Tae Cha, Jin-Kyu Rhee, Seong Woon Roh
    Systematic and Applied Microbiology.2020; 43(3): 126085.     CrossRef
  • Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
    Young Joon Oh, Joon Yong Kim, Hyo Kyeong Park, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
    Journal of Microbiology.2019; 57(11): 997.     CrossRef
Bacillus ferrooxidans sp. nov., an iron(II)-oxidizing bacterium isolated from paddy soil
Guo-Wei Zhou , Xiao-Ru Yang , Jian-Qiang Su , Bang-Xiao Zheng , Yong-Guan Zhu
J. Microbiol. 2018;56(7):472-477.   Published online June 14, 2018
DOI: https://doi.org/10.1007/s12275-018-7543-3
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AbstractAbstract PDF
An endospore-forming bacterium, designated YT-3T, was isolated from a paddy soil in Yingtan, Jiangxi, China. Cells of strain YT-3T were Gram-positive, rod-shaped, facultative anaerobic, catalase, and oxidase positive. The optimum growth temperature and pH were 30°C (ranged from 15 to 50°C) and 6.5–7.0 (ranged from 3 to 11), respectively. Analysis of the 16S rRNA gene sequence showed that strain YT-3T was affiliated to the genus Bacillus and displayed the highest similarity to that of Bacillus drentensis JCM 21707T (98.3%), followed by B. ginsengisoli JCM 17335T (97.8%) and B. fumarioli JCM 21708T (97.0%). The similarity of rpoB gene sequence between strain YT-3T and B. drentensis JCM 21707T, B. ginsengisoli JCM 17335T and B. fumarioli JCM 21708T was 80.4%, 81.5%, and 82.1%, respectively. The genomic DNA G + C content was 44.9 mol%. The predominant respiratory quinone was Menaquinone-7, and meso-diaminopimelic acid was present in the peptidoglycan layer of cell wall. The major fatty acids were C15:0 anteiso (36.2%), C14:0 iso (19.6%), C15:0 iso (17.4%), and C16:0 iso (9.8%). The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phospholipids, and ammoniac phospholipids. The DNA-DNA hybridization values between isolate YT-3T and B. drentensis (JCM 21707T), B. ginsengisoli (JCM 17335T), and B. fumarioli (JCM 21708T) were 36.3%, 30.3%, and 25.3%, respectively. On the basis of physiological, genetic and biochemical data, strain YT-3T represented a novel species of the genus Bacillus, for which the name Bacillus ferrooxidans sp. nov was proposed. The type strain is YT-3T (= KCTC 33875T = CCTCC AB 2017049T).

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    Chemical Geology.2025; 690: 122867.     CrossRef
  • Discarded masks as hotspots of antibiotic resistance genes during COVID-19 pandemic
    Shu-Yi-Dan Zhou, Chenshuo Lin, Kai Yang, Le-Yang Yang, Xiao-Ru Yang, Fu-Yi Huang, Roy Neilson, Jian-Qiang Su, Yong-Guan Zhu
    Journal of Hazardous Materials.2022; 425: 127774.     CrossRef
  • Underestimation about the Contribution of Nitrate Reducers to Iron Cycling Indicated by Enterobacter Strain
    Ming-Jun Li, Meng-Yun Wei, Xiao-Ting Fan, Guo-Wei Zhou
    Molecules.2022; 27(17): 5581.     CrossRef
  • Fe toxicity in plants: Impacts and remediation
    Noreen Zahra, Muhammad Bilal Hafeez, Kanval Shaukat, Abdul Wahid, Mirza Hasanuzzaman
    Physiologia Plantarum.2021;[Epub]     CrossRef
  • Metabolic Inactivity and Re-awakening of a Nitrate Reduction Dependent Iron(II)-Oxidizing Bacterium Bacillus ferrooxidans
    Guo-Wei Zhou, Xiao-Ru Yang, Regin Rønn, Jian-Qiang Su, Li Cui, Bang-Xiao Zheng, Yong-Guan Zhu
    Frontiers in Microbiology.2019;[Epub]     CrossRef
Terrabacter ginsengisoli sp. nov., isolated from ginseng cultivating soil
Mei-Fang Jin , Xiao-Tian Quan , Muhammad Zubair Siddiqi , Qing-Zhen Liu , Hong-Shan Yu , Wan-Taek Im
J. Microbiol. 2018;56(5):331-336.   Published online May 2, 2018
DOI: https://doi.org/10.1007/s12275-018-8098-z
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AbstractAbstract PDF
A Gram-positive, strictly aerobic, nonmotile, yellowish, coccus- rod-shaped bacterium (designated Gsoil 653T) isolated from ginseng cultivating soil was characterized using a polyphasic approach to clarify its taxonomic position. The strain Gsoil 653T exhibited optimal growth at pH 7.0 on R2A agar medium at 30°C. Phylogenetic analysis based on 16S rRNA gene sequence similarities, indicated that Gsoil 653T belongs to the genus Terrabacter of the family Humibacillus, and was closely related to Terrabacter tumescens DSM 20308T (98.9%), Terrabacter carboxydivorans PY2T (98.9%), Terrabacter terrigena ON10T (98.8%), Terrabacter terrae PPLBT (98.6%), and Terrabacter lapilli LR-26T (98.6%). The DNA G + C content was 70.5 mol%. The major quinone was MK-8(H4). The primary polar lipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidyl-ethanolamine. The predominant fatty acids were iso-C15:0, iso-C16:0, iso-C14:0, and anteiso-C15:0, as in the case of genus Terrabacter, thereby supporting the categorization of strain Gsoil 653T. However, the DNA-DNA relatedness between Gsoil 653T and closely related strains of Terrabacter species was low at less than 31%. Moreover, strain Gsoil 653T could be both genotypically and phenotypically distinguished from the recognized species of the genus Terrabacter. This isolate, therefore, represents a novel species, for which the name Terrabacter ginsengisoli sp. nov. is proposed with the type strain Gsoil 653T (= KACC 19444T = LMG 30325T).

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    R.A. Adeleke, C. C. Obieze, C. Mukoro, C. B. Chikere, S. Tsipinana, A. Nciizah
    Archives of Agronomy and Soil Science.2023; 69(5): 803.     CrossRef
  • Ecofriendly Synthesis of Silver Nanoparticles by Terrabacter humi sp. nov. and Their Antibacterial Application against Antibiotic-Resistant Pathogens
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    International Journal of Molecular Sciences.2020; 21(24): 9746.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(5): 1247.     CrossRef
Tardibacter chloracetimidivorans gen. nov., sp. nov., a novel member of the family Sphingomonadaceae isolated from an agricultural soil from Jeju Island in Republic of Korea
Hyosun Lee , Dong-Uk Kim , Sooyeon Park , Jung-Hoon Yoon , Jae-Hyung Ahn , Jong-Ok Ka
J. Microbiol. 2018;56(5):324-330.   Published online May 2, 2018
DOI: https://doi.org/10.1007/s12275-018-7455-2
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AbstractAbstract PDF
A pale yellow bacterial strain, designated JJ-A5T, was isolated form an agricultural soil from Jeju Island in Republic of Korea. Cells of the strain were Gram-stain-negative, motile, flagellated and rod-shaped. The strain grew at 15–30°C, pH 6.0–9.0, and in the presence of 0–1.5% (w/v) NaCl. Growth occurred on R2A, but not on Luria-Bertani agar, nutrient agar, trypticase soy agar and MacConkey agar. The strain utilized alachlor as a sole carbon source for growth. The strain JJ-A5T showed 16S rRNA gene sequence similarities lower than 95.4% with members of the family Sphingomonadaceae. Phylogenetic analysis showed that the strain belongs to the family Sphingomonadaceae and strain JJ-A5T was distinctly separated from established genera of this family. The strain contained Q-10 as dominant ubiquinone and spermidine as major polyamine. The predominant cellular fatty acids were summed feature 8 (C18:1 ω7c and/or C18:1 ω6c), summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), 11-methyl C18:1 ω7c, C16:0 and C14:0 2-OH. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, sphingoglycolipid, and phosphatidylcholine. The DNA G + C content of the strain was 62.7 mol%. On the basis of the phenotypic, genomic and chemotaxonomic characteristics, strain JJ-A5T is considered to represent a novel genus and species within the family Sphingomonadaceae, for which the name Tardibacter chloracetimidivorans gen. nov., sp. nov. is proposed. The type strain of Tardibacter chloracetimidivorans is JJ-A5T (= KACC 19450T = NBRC 113160T).

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  • Removal of alachlor from the water/soil environments: The significance of microbial remediation and its biochemical mechanisms
    Zeren Li, Mengyi Chen, Wen-Juan Chen, Mingqiu Liu, Guiling Si, Xixian Zhu, Kalpana Bhatt, Sandhya Mishra, Mohamed A. Ghorab, Shaohua Chen
    Journal of Water Process Engineering.2024; 68: 106387.     CrossRef
  • Processes governing the environmental fates of alachlor in soil and aqueous media: a critical review
    M. U. Ghani, H. N. Asghar, H. Nadeem, M. Shahid, M. A. Zeshan, A. Niaz, S. Hussain, S. Hussain
    International Journal of Environmental Science and Technology.2022; 19(8): 8043.     CrossRef
  • New Associations of Aerobic Bacteria that Actively Decompose Lindane
    E. A. Nazarova, D. O. Egorova, L. N. Anan’ina, E. S. Korsakova, E. G. Plotnikova
    Applied Biochemistry and Microbiology.2021; 57(5): 643.     CrossRef
Hymenobacter terrigena sp. nov., isolated from soil
Jeong-Eun Ohn , Leonid N. Ten , Kyeung Il Park , Byung-Oh Kim , Jeung-Sul Han , Hee-Young Jung
J. Microbiol. 2018;56(4):231-237.   Published online April 2, 2018
DOI: https://doi.org/10.1007/s12275-018-8029-z
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AbstractAbstract PDF
A Gram-stain-negative, non-motile, non-spore-forming, rodshaped, aerobic bacterial strain, designated S1-2-2-5T, was isolated from the Jeollabuk-do province, Republic of Korea, and was characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain S1-2-2-5T belonged to the family Cytophagaceae in phylum Bacteroidetes, and was most closely related to Hymenobacter terrae DG7AT (98.2%), Hymenobacter rubidus DG7BT (98.0%), Hymenobacter soli PB17T (97.7%), Hymenobacter daeguensis 16F3Y-2T (97.2%) and Hymenobacter saemangeumensis GSR0100T (97.0%). The G + C content of the genomic DNA of strain S1-2-2-5T was 59.4 mol%. The detection of menaquinone MK-7 as the predominant respiratory quinone, a fatty acid profile with summed feature 3 (C16:1 ω7c/C16:1 ω6c; 32.0%), C15:0 iso (19.0%), and C15:0 anteiso (15.0%) as the major components, and a polar lipid profile with phosphatidylethanolamine as the major component supported the affiliation of strain S1-2-2-5T to the genus Hymenobacter. The DNA-DNA relatedness between strain S1-2-2-5T and H. terrae KCTC 32554T, H. rubidus KCTC 32553T, H. soli KCTC 12607T, H. daeguensis KCTC 52537T, and H. saemangeumensis KACC 16452T were 49.5, 48.2, 34.1, 28.1, and 31.8% respectively, clearly showing that the isolate is not related to them at the species level. Strain S1-2-2-5T could be clearly differentiated from its closest neighbors on the basis of its phenotypic, genotypic and chemotaxonomic features. Therefore, strain S1-2-2-5T represents a novel species of the genus Hymenobacter, for which the name Hymenobacter terrigena sp. nov. is proposed. The type strain is S1-2-2-5T (= KCTC 52737T = JCM 32195T).

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    Seonjae Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Hymenobacter canadensis sp. nov., isolated from freshwater of the pond in Cambridge Bay, Canada
    Woohyun Kim, Seonghan Jang, Namyi Chae, Mincheol Kim, Jung-Yong Yeh, Sanghee Kim, Yung Mi Lee
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
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    Ve Van Le, So-Ra Ko, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
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Bacillus spongiae sp. nov., isolated from sponge of Jeju Island
Ga-Eun Lee , Wan-Taek Im , Jin-Sook Park
J. Microbiol. 2018;56(4):217-222.   Published online February 28, 2018
DOI: https://doi.org/10.1007/s12275-018-7511-y
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AbstractAbstract PDF
A Gram-reaction-positive, strictly aerobic, motile, endospore- forming, and rod-shaped bacterial strain designated 135PIL107-10T was isolated from a sponge on Jeju Island, and its taxonomic position was investigated using a polyphasic approach. Strain 135PIL107-10T grew at 20–37°C (optimum temperature, 25°C) and pH 6.0–10.0 (optimum pH, 6.0) on marine and R2A agars. Based on 16S rRNA gene phylogeny analysis, the novel strain formed a new branch within the genus Bacillus of the family Bacillaceae, and formed clusters with Bacillus thaohiensis NHI-38T (96.8%), Bacillus fengqiuensis NPK15T (96.7%), and Bacillus songklensis CAU 1033T (96.7%). Lower sequence similarities (97.0%) were found with the type strains of all other recognized members of the genus Bacillus (95.6–96.8% similarity). The G + C content of the genomic DNA was 43.6 mol%. The predominant respiratory quinone was menaquinone-7 and the major fatty acids were iso-C15:0 and iso-C17:1ω10c. The overall polar lipid patterns were diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine. The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The isolate therefore represents a novel species, for which the name Bacillus spongiae sp. nov. is proposed, with the type strain 135PIL107-10T (= KACC 19275T = LMG 30080T).

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  • Antimicrobial Biosynthetic Potential and Phylogenetic Analysis of Culturable Bacteria Associated with the Sponge Ophlitaspongia sp. from the Yellow Sea, China
    Lei Chen, Xue-Ning Wang, Hong-Yu Bi, Guang-Yu Wang
    Marine Drugs.2022; 20(10): 588.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(5): 1247.     CrossRef
Spirosoma pomorum sp. nov., isolated from apple orchard soil
Weilan Li , Seung-Yeol Lee , In-Kyu Kang , Leonid N. Ten , Hee-Young Jung
J. Microbiol. 2018;56(2):90-96.   Published online February 2, 2018
DOI: https://doi.org/10.1007/s12275-018-7430-y
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AbstractAbstract PDF
A Gram-negative, motile, rod-shaped, aerobic bacterial strain, designated S7-2-11T, was isolated from apple orchard soil from Gyeongsangnam-do Province, Republic of Korea, and was characterized taxonomically using a polyphasic approach. 16S rRNA gene sequence analysis indicated that strain S7-2- 11T belongs to the family Cytophagaceae in phylum Bacteroidetes, and is closely related to Spirosoma luteolum 16F6ET (94.2% identity), Spirosoma knui 15J8-12T (92.7%), and Spirosoma linguale DSM 74T (91.0%). The G + C content of the genomic DNA of strain S7-2-11T was 49.8 mol%. Strain S7-2-11T contained summed feature 3 (C16:1 ω7c/C16:1 ω6c; 35.1%), C16:1 ω5c (22.4%), C15:0 iso (13.9%), and C17:0 iso 3-OH (10.6%) as major cellular fatty acids, and MK-7 as the predominant respiratory quinone. The main polar lipids were phosphatidylethanolamine, an unidentified aminophospholipid, and two unidentified polar lipids. Phenotypic and chemotaxonomic data supported the affiliation of strain S7-2-11T with the genus Spirosoma. The results of physiological and biochemical tests showed the genotypic and phenotypic differentiation of the isolate from recognized Spirosoma species. On the basis of its phenotypic properties, genotypic distinctiveness, and chemotaxonomic features, strain S7-2-11T represents a novel species of the genus Spirosoma, for which the name Spirosoma pomorum sp. nov. is proposed. The type strain is S7-2-11T (= KCTC 52726T = JCM 32130T).

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    Scientific Reports.2023;[Epub]     CrossRef
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    Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
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    Julian Rojas, Binoy Ambika Manirajan, Stefan Ratering, Christian Suarez, Rita Geissler-Plaum, Sylvia Schnell
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
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    Julian Rojas, Binoy Ambika Manirajan, Stefan Ratering, Christian Suarez, Sylvia Schnell, David Rasko
    Microbiology Resource Announcements.2020;[Epub]     CrossRef
  • Spirosoma telluris sp. nov. and Spirosoma arboris sp. nov. isolated from soil and tree bark, respectively
    Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5355.     CrossRef
  • Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
    Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
    Antonie van Leeuwenhoek.2019; 112(10): 1523.     CrossRef
  • Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
    Guillaume Tahon, Liesbeth Lebbe, Anne Willems
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2018; 68(7): 2130.     CrossRef
Baekduia soli gen. nov., sp. nov., a novel bacterium isolated from the soil of Baekdu Mountain and proposal of a novel family name, Baekduiaceae fam. nov.
Dong-Shan An , Muhammad Zubair Siddiqi , Kyoung-Ho Kim , Hong-Shan Yu , Wan-Taek Im
J. Microbiol. 2018;56(1):24-29.   Published online January 4, 2018
DOI: https://doi.org/10.1007/s12275-018-7107-6
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AbstractAbstract PDF
A taxonomic study was conducted on BR7-21T, a bacterial strain isolated from the soil of a ginseng field in Baekdu Mountain. Comparative studies of the 16S rRNA gene sequence showed that the isolate was most closely related to Conexibacter woesei DSM 14684T, Solirubrobacter pauli ATCC BAA-492T, Patulibacter minatonensis JCM 12834T, with 93.8%, 92.4%, and 91.5% sequence similarity, respectively; each genus represented a family in the order Solirubrobacterales. Strain BR7-21T was Gram-reaction positive, non-spore forming, aerobic, non-motile, and short rod-shaped. It grew well on half-strength R2A medium. The G + C content of the genomic DNA was 73.9%. It contained meso-diaminopimelic acid in the cell wall and the major menaquinones were MK-7(H4) and MK-8(H4). The major fatty acids were summarized as (C16:1 ω7c/iso-C15:0 2-OH), iso-C16:0, and C17:0 cyclo. On the basis of polyphasic evidence, it was proposed that strain BR7- 21T should be placed in a new genus and species, for which the name Baekduia soli gen. nov., sp. nov. was proposed with the type strain BR7-21T (= KCTC 22257T = LMG 24797T). The family Baekduiaceae fam. nov. is proposed to encompass the genus Baekduia gen. nov.

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  • Baekduia alba sp. nov., a novel representative of the order Solirubrobacterales isolated from temperate grassland soil
    Selma Vieira, Katharina J. Huber, Alicia Geppert, Jacqueline Wolf, Meina Neumann-Schaal, Mathias Müsken, Jörg Overmann
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  • Paraconexibacter antarcticus sp. nov., a novel actinobacterium isolated from Antarctic tundra soil
    Chol Song Kim, Zhenyu Liu, Xiaoya Peng, Kun Qin, Jun Huang, Jingjing Niu, Yixuan Liu, Jia Liu, Mingjing Sun, Fang Peng
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    Agronomy.2022; 12(4): 954.     CrossRef
  • Capillimicrobium parvum gen. nov., sp. nov., a novel representative of Capillimicrobiaceae fam. nov. within the order Solirubrobacterales, isolated from a grassland soil
    Selma Vieira, Katharina J. Huber, Alicia Geppert, Jacqueline Wolf, Meina Neumann-Schaal, Manja Luckner, Gerhard Wanner, Mathias Müsken, Jörg Overmann
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  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(5): 1247.     CrossRef
Spirosoma migulaei sp. nov., isolated from soil
Joseph Okiria , Leonid N. Ten , Su-Jin Park , Seung-Yeol Lee , Dong Hoon Lee , In-Kyu Kang , Dae Sung Lee , Hee-Young Jung
J. Microbiol. 2017;55(12):927-932.   Published online December 7, 2017
DOI: https://doi.org/10.1007/s12275-017-7377-4
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AbstractAbstract PDF
A Gram-stain-negative, non-motile, non-spore-forming, rodshaped, aerobic bacterium, designated 15J9-8T, was isolated from soil on Jeju Island, Republic of Korea. The isolate was able to grow between 10 and 30°C, pH 6.5–8.5, and in presence of 0–1% (w/v) NaCl. The results of comparative 16S rRNA gene sequence analysis indicated that strain 15J9-8T represented a member of the family Cytophagaceae, phylum Bacteroidetes, and was most closely related to Spirosoma aerophilum 5516J-17T (96.1% similarity), Spirosoma pulveris JSH5-14T (95.6%), and Spirosoma linguale DSM 74T (95.2%). The G + C content of the genomic DNA of the isolate was 47.0 mol%. Strain 15J9-8T contained summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, and iso-C15:0 as the major fatty acids, phosphatidylethanolamine and an unidentified aminophospholipid as the main polar lipids, and menaquinone MK-7 as the predominant respiratory quinone. On the basis of its phenotypic and genotypic properties, and phylogenetic distinctiveness, strain 15J9-8T should be classified as a representative of a novel species of the genus Spirosoma, for which the name Spirosoma migulaei sp. nov. is proposed. The type strain is 15J9-8T (=KCTC 52028T =JCM 31996T).

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  • Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
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    Scientific Reports.2023;[Epub]     CrossRef
  • Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
    Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Fibrivirga algicola gen. nov., sp. nov., an algicidal bacterium isolated from a freshwater river
    Sanghwa Park, Ja Young Cho, Dong-Hyun Jung, Seok Won Jang, Jung Hye Eom, Seung Won Nam, Dae Ryul Kwon, Jaewon Ryu, Keug Tae Kim
    Antonie van Leeuwenhoek.2022; 115(7): 899.     CrossRef
  • Spirosoma telluris sp. nov. and Spirosoma arboris sp. nov. isolated from soil and tree bark, respectively
    Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5355.     CrossRef
  • Complete Genome Sequence of Spirosoma sp. Strain KCTC 42546, Isolated from a Reservoir in South Korea
    Pokchut Kusolkumbot, Song-Gun Kim, Chatrudee Suwannachart, Kenneth M. Stedman
    Microbiology Resource Announcements.2020;[Epub]     CrossRef
  • Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
    Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
    Antonie van Leeuwenhoek.2019; 112(10): 1523.     CrossRef
  • Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
    Guillaume Tahon, Liesbeth Lebbe, Anne Willems
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George Garrity
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1411.     CrossRef
Spirosoma lituiforme sp. nov., isolated from soil
Weilan Li , Seung-Yeol Lee , Sangkyu Park , Byung-Oh Kim , Leonid N. Ten , Hee-Young Jung
J. Microbiol. 2017;55(11):856-861.   Published online October 27, 2017
DOI: https://doi.org/10.1007/s12275-017-7255-0
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AbstractAbstract PDF
A Gram-staining-negative, non-motile, curved rod-shaped, aerobic bacterium, designated S1-2-4T, was isolated from soil in Jeollabuk-do province, Republic of Korea, and was characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain S1-2-4T was a member of the family Cytophagaceae and most closely related to ‘Spirosoma radiotolerans’ DG5A (97.2%), Spirosoma fluviale MSd3T (96.4%), and Spirosoma linguale DSM 74T (96.3%). The genomic DNA G + C content of strain S1-2-4T was 49.7 mol%. The major fatty acids were summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, and C16:0, and the major polar lipid was phosphatidylethanolamine. MK-7 was the predominant respiratory quinone. Phenotypic and chemotaxonomic data supported the affiliation of strain S1-2-4T with the genus Spirosoma. DNA-DNA hybridization between strain S1-2-4T and ‘Spirosoma radiotolerans’ showed relatively low DNA-DNA relatedness (31%). Strain S1-2-4T could be distinguished from its closest phylogenetic neighbors based on its phenotypic, genotypic, and chemotaxonomic features. Therefore, strain S1-2-4T represents a novel member of the genus Spirosoma, for which the name Spirosoma lituiforme sp. nov. is proposed. The type strain is S1- 2-4T (= KCTC 52724T = JCM 32128T).

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  • Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
    Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
    Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
    Antonie van Leeuwenhoek.2019; 112(10): 1523.     CrossRef
  • Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
    Guillaume Tahon, Liesbeth Lebbe, Anne Willems
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2018; 68(3): 693.     CrossRef
Spirosoma daeguensis sp. nov., isolated from beach soil
Nabil Elderiny , Leonid N. Ten , Jae-Jin Lee , Seung-Yeol Lee , Sangkyu Park , Young-Je Cho , Myung Kyum Kim , Hee-Young Jung
J. Microbiol. 2017;55(9):678-683.   Published online September 2, 2017
DOI: https://doi.org/10.1007/s12275-017-7211-z
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AbstractAbstract PDF
A Gram-stain-negative, non-motile, non-spore-forming, rodshaped, aerobic bacterium, designated 15J9-6T, was isolated from beach soil on Jeju Island, South Korea. Strain 15J9-6T, grew at 10–30°C (optimum growth at 25°C) and pH 7–8 (optimum growth at pH 7) on R2A, NA, and TSA agar. Phylogenetically, the strain was closely related to members of the genus Spirosoma (92.3–90.1% 16S rRNA gene sequence similarities) and showed highest sequence similarity to Spirosoma panaciterrae DSM 21099T (92.3%). The G+C content of the genomic DNA of strain 15J9-6T was 45.7 mol%. The strain contained phosphatidylethanolamine, two unidentified aminophospholipids, an unidentified phospholipid, and an unidentified lipid as the major polar lipids; menaquinone MK-7 as the predominant respiratory quinone and summed feature 3 (C16:1 ω6c/C16:1 ω7c; 30.1%), C16:1 ω5c (23.1%), iso C15:0 (13.3%), and C16:0 (8.4%) as the major fatty acids which supported the affiliation of strain 15J9-6T to the genus Spirosoma. The results of physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain 15J9-6T from recognized Spirosoma species. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain 15J9-6T represents a novel species of the genus Spirosoma, for which the name Spirosoma daeguensis sp. nov. is proposed. The type strain is 15J9-6T (=KCTC 52036T =JCM 31995T)

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  • Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
    Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
    Guillaume Tahon, Liesbeth Lebbe, Anne Willems
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Spirosoma humi sp. nov., Isolated from Soil in South Korea
    Li Weilan, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Leonid N. Ten, Hee-Young Jung
    Current Microbiology.2018; 75(3): 328.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
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    International Journal of Systematic and Evolutionary Microbiology .2017; 67(11): 4291.     CrossRef
Spirosoma metallicus sp. nov., isolated from an automobile air conditioning system
Hyosun Lee , Dong-Uk Kim , Suyeon Lee , Sooyeon Park , Jung-Hoon Yoon , So Yoon Park , Jong-Ok Ka
J. Microbiol. 2017;55(9):673-677.   Published online August 5, 2017
DOI: https://doi.org/10.1007/s12275-017-7162-4
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AbstractAbstract PDF
A Gram-stain-negative and orangish yellow-pigmented bacterial strain, designated PR1014KT, was isolated from an automobile evaporator core collected in Korea. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain PR1014KT was related with the members of the genus Spirosoma (94.7–90.2%) and closely related with Spirosoma lacussanchae CPCC 100624T (94.7%), Spirosoma knui 15J8- 12T (94.3%), and Spirosoma soli MIMBbqt12T (93.3%). The strain grew at 15–40°C (optimum, 25°C), pH 6.5–7.0 (optimum, 6.5) and 0–1% (w/v) NaCl (optimum, 0%). The predominant fatty acids were summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C16:0, iso-C15:0, C16:1 ω5c, and iso-C17:0 3-OH. The major menaquinone was MK-7. The polar lipid profile of the strain indicated that the presence of one phosphatidylethanolamine, one unidentified aminolipid, two unidentified aminophospholipids, and three unidentified lipids. The DNA G+C content of the strain was 47.4 mol%. On the basis of the phenotypic, genotypic and chemotaxonomic characteristics, strain PR1014KT represents a novel species in the genus Spirosoma, for which the name Spirosoma metallicus sp. nov. (=KACC 17940T =NBRC 110792T) is proposed.

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  • Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
    Miyoung Won, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Spirosoma taeanense sp. nov., a radiation resistant bacterium isolated from a coastal sand dune
    Ji Hee Lee, Jong-Hyun Jung, Min-Kyu Kim, Han Na Choe, Chi Nam Seong, Sangyong Lim
    Antonie van Leeuwenhoek.2021; 114(2): 151.     CrossRef
  • Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil
    Long Zhang, Xi-Yi Zhou, Xiao-Jing Su, Qiang Hu, Jian-Dong Jiang
    Antonie van Leeuwenhoek.2019; 112(10): 1523.     CrossRef
  • Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
    Guillaume Tahon, Liesbeth Lebbe, Anne Willems
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2018; 68(3): 693.     CrossRef
Pseudaminobacter granuli sp. nov., isolated from granules used in a wastewater treatment plant
Young Ki Hahn , Minseok S. Kim , Wan-Taek Im
J. Microbiol. 2017;55(8):607-611.   Published online July 28, 2017
DOI: https://doi.org/10.1007/s12275-017-7257-y
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AbstractAbstract PDF
A Gram negative, aerobic, non-motile and rod-shaped bacterial strain designated as Gr-2T was isolated from granules used in a wastewater treatment plant in Korea, and its taxonomic position was investigated using a polyphasic approach. Strain Gr-2T grew at 18–37°C (optimum temperature, 30°C) and a pH of 6.0–8.0 (optimum pH, 7.0) on R2A agar medium. Based on 16S rRNA gene phylogeny, the novel strain showed a new branch within the genus Pseudaminobacter of the family Phyllobacteriaceae, and formed clusters with Pseudaminobacter defluvii THI 051T (98.9%) and Pseudaminobacter salicylatoxidans BN12T (98.7%). The G+C content of the genomic DNA was 63.6%. The predominant respiratory quinone was ubiquinone-10 (Q-10) and the major fatty acids were cyclo-C19:0 ω8c, C18:1 ω7c, and iso-C17:0. The overall polar lipid patterns of Gr-2T were similar to those determined for the other Pseudaminobacter species. DNA-DNA relatedness values between strain Gr-2T and its closest phylogenetically neighbors were below 18%. Strain Gr-2T could be differentiated genotypically and phenotypically from the recognized species of the genus Pseudaminobacter. The isolate therefore represents a novel species, for which the name Pseudaminobacter granuli sp. nov. is proposed with the type strain Gr-2T (=KACC 18877T =LMG 29567T).

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    BMC Genomics.2024;[Epub]     CrossRef
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Mucilaginibacter hankyongensis sp. nov., isolated from soil of ginseng field Baekdu Mountain
Qingmei Liu , Muhammad Zubair Siddiqi , Mi-Sun Kim , Sang Yong Kim , Wan-Taek Im
J. Microbiol. 2017;55(7):525-530.   Published online June 30, 2017
DOI: https://doi.org/10.1007/s12275-017-7180-2
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AbstractAbstract PDF
A Gram-negative, non-motile, aerobic, and rod-shaped bacterial strain designated as BR5-28T was isolated from the soil of a ginseng field at Baekdu Mountain Korea, and its taxonomic position was investigated using a polyphasic approach. Strain BR5-28T grew at 10–42°C (optimum temperature, 30°C) and pH 5.5–8.5 (optimum pH, 7.0) on R2A agar medium without additional NaCl supplementation. Strain BR5- 28T exhibited β-glucosidase activity, which was responsible for its ability to transform the ginsenosides Rb1 and Rd (the two dominant active components of ginseng) to compound-K. Based on 16S rRNA gene phylogeny, the novel strain showed a new branch within the genus Mucilaginibacter of the family Sphingobacteriaceae, and formed clusters with Mucilaginibacter frigoritolerans FT22T (95.8%) and Mucilaginibacter gotjawali SA3-7T (95.7%). The G+C content of the genomic DNA was 45.1%. The predominant respiratory quinone was MK-7 and the major fatty acids were summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c), iso-C15:0 and anteiso-C15:0. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Strain BR5- 28T was differentiated genotypically and phenotypically from the recognized species of the genus Mucilaginibacter. The isolate therefore represents a novel species, for which the name Mucilaginibacter hankyongensis sp. nov. is proposed, with the type strain BR5-28T (=KCTC 22274T =DSM 21151T).

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    Jiyoun Kim, Byungjo Lee, Geeta Chhetri, Inhyup Kim, Yoonseop So, Wonhee Jang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Biologically facilitated precipitation of metals in low-Fe waters at the sulphidic Mount Chalmers mine, Queensland, Australia
    Anicia Henne, Dave Craw, Emma Gagen, Gordon Southam
    Ore Geology Reviews.2021; 136: 104238.     CrossRef
  • Mucilaginibacter hurinus sp. nov., isolated from briquette warehouse soil
    Lina Choi, Xinran Zhao, Yali Song, Minghan Wu, Gejiao Wang, Mingshun Li
    Archives of Microbiology.2020; 202(1): 127.     CrossRef
  • Mucilaginibacter panaciglaebae sp. nov., isolated from soil of a ginseng field
    Soon Youl Lee, Muhammad Zubair Siddiqi, Sang Yong Kim, Hong Shan Yu, Jae Hak Lee, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(1): 149.     CrossRef
  • Terrabacter ginsengisoli sp. nov., isolated from ginseng cultivating soil
    Mei-Fang Jin, Xiao-Tian Quan, Muhammad Zubair Siddiqi, Qing-Zhen Liu, Hong-Shan Yu, Wan-Taek Im
    Journal of Microbiology.2018; 56(5): 331.     CrossRef
  • Genomic Islands Confer Heavy Metal Resistance in Mucilaginibacter kameinonensis and Mucilaginibacter rubeus Isolated from a Gold/Copper Mine
    Yuan Ping Li, Nicolas Carraro, Nan Yang, Bixiu Liu, Xian Xia, Renwei Feng, Quaiser Saquib, Hend A Al-Wathnani, Jan Roelof Van der Meer, Christopher Rensing
    Genes.2018; 9(12): 573.     CrossRef
Spirosoma luteolum sp. nov. isolated from water
Jae-Jin Lee , Su-Jin Park , Yeon-Hee Lee , Seung-Yeol Lee , Sangkyu Park , Young-Je Cho , Myung Kyum Kim , Leonid N. Ten , Hee-Young Jung
J. Microbiol. 2017;55(4):247-252.   Published online March 13, 2017
DOI: https://doi.org/10.1007/s12275-017-6455-y
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AbstractAbstract PDF
A novel Gram-negative and rod-shaped bacterial strain, de-signated as 16F6ET, was isolated from a water sample. Cells were yellowish in color and catalase- and oxidase-positive. The strain grew at 10–37°C (optimum at 25°C) but not at 4 and 42°C, and pH 5–7 (optimum at pH 7). It showed mod-erate resistance to gamma-ray irradiation. Comparative phy-logenetic analysis showed that strain 16F6ET belonged to the family Cytophagaceae of the class Cytophagia. Furthermore, this isolate showed relatively low 16S rRNA gene sequence similarities (90.7–93.1%) to the members of the genus Spiro-soma. The major fatty acids were summed feature 3 (C16:1 ω7c/C16:1 ω6c), C16:1 ω5c, C16:0 N alcohol, and C16:0. The polar lipid profile indicated presence of phosphatidylethanolamine, unknown aminophospholipids, an unknown amino lipid, unknown phospholipids, and unknown polar lipids. The pre-dominant isoprenoid quinone was MK-7. The genomic DNA G+C content of strain 16F6ET was 56.5 mol%. Phenotypic, phylogenetic, and chemotaxonomic properties indicated that isolate 16F6ET represents a novel species within the genus Spirosoma, for which the name Spirosoma luteolum sp. nov. is proposed. The type strain is 16F6ET (=KCTC 52199T =JCM 31411T).

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    Scientific Reports.2023;[Epub]     CrossRef
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    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Theoretical design of new organic compounds based on diketopyrrolopyrrole and phenyl for organic bulk heterojunction solar cell applications: DFT and TD-DFT study
    M. Raftani, T. Abram, A. Azaid, R. Kacimi, M.N. Bennani, M. Bouachrine
    Materials Today: Proceedings.2021; 45: 7334.     CrossRef
  • Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
    Guillaume Tahon, Liesbeth Lebbe, Anne Willems
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Spirosoma terrae sp. nov., Isolated from Soil from Jeju Island, Korea
    Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, In-Kyu Kang, Myung Kyum Kim, Hee-Young Jung
    Current Microbiology.2018; 75(4): 492.     CrossRef
  • Spirosoma harenae sp. nov., a Bacterium Isolated from a Sandy Beach
    Leonid N. Ten, Nabil Elderiny, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, Myung Kyum Kim, Hee-Young Jung
    Current Microbiology.2018; 75(2): 179.     CrossRef
  • Spirosoma jeollabukense sp. nov., isolated from soil
    Weilan Li, Leonid N. Ten, Seung-Yeol Lee, Dong Hoon Lee, Hee-Young Jung
    Archives of Microbiology.2018; 200(3): 431.     CrossRef
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    Li Weilan, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Leonid N. Ten, Hee-Young Jung
    Current Microbiology.2018; 75(3): 328.     CrossRef
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    Weilan Li, Leonid N. Ten, Seung-Yeol Lee, In-Kyu Kang, Hee-Young Jung
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(3): 930.     CrossRef
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    Weilan Li, Seung-Yeol Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
    Current Microbiology.2018; 75(6): 694.     CrossRef
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    Journal of Microbiology.2018; 56(2): 90.     CrossRef
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    Dong-Uk Kim, Hyosun Lee, Suyeon Lee, Sooyeon Park, Jung-Hoon Yoon, Jong-Ok Ka
    International Journal of Systematic and Evolutionary Microbiology .2018; 68(2): 523.     CrossRef
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    Joseph Okiria, Leonid N. Ten, Su-Jin Park, Seung-Yeol Lee, Dong Hoon Lee, In-Kyu Kang, Dae Sung Lee, Hee-Young Jung
    Journal of Microbiology.2017; 55(12): 927.     CrossRef
  • Spirosoma litoris sp. nov., a bacterium isolated from beach soil
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    International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 4986.     CrossRef
  • Spirosoma flavus sp. nov., a novel bacterium from soil of Jeju Island
    Nabil Elderiny, Seung-Yeol Lee, Sangkyu Park, In-Kyu Kang, Myung Kyum Kim, Dae Sung Lee, Leonid N. Ten, Hee-Young Jung
    Journal of Microbiology.2017; 55(11): 850.     CrossRef
  • Spirosoma koreense sp. nov., a species of the family Cytophagaceae isolated from beach soil
    Leonid N. Ten, Joseph Okiria, Jae-Jin Lee, Seung-Yeol Lee, In-Kyu Kang, Dae Sung Lee, Hee-Young Jung
    International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 5198.     CrossRef
  • Spirosoma daeguensis sp. nov., isolated from beach soil
    Nabil Elderiny, Leonid N. Ten, Jae-Jin Lee, Seung-Yeol Lee, Sangkyu Park, Young-Je Cho, Myung Kyum Kim, Hee-Young Jung
    Journal of Microbiology.2017; 55(9): 678.     CrossRef
  • List of novel names and novel combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2017; 67(7): 2075.     CrossRef
Jindonia aestuariivivens gen. nov., sp. nov., isolated from a tidal flat on the south-western sea in Republic of Korea
Sooyeon Park , Sun Young Yoon , Min-Ji Ha , Jung-Hoon Yoon
J. Microbiol. 2017;55(6):421-427.   Published online March 1, 2017
DOI: https://doi.org/10.1007/s12275-017-6621-2
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AbstractAbstract PDF
A Gram-stain-negative, aerobic, non-flagellated, and coccoid, ovoid or rod-shaped bacterium, designated JDTF-65T, was isolated from a tidal flat on the south-western sea in Republic of Korea. Strain JDTF-65T grew optimally at 25°C, at pH 7.0– 8.0 and in the presence of 2.0% (w/v) NaCl. Strain JDTF-65T exhibited 16S rRNA gene sequence similarities of 97.1–97.6% to the type strains of ‘Aliisedimentitalea scapharcae’, Phaeo-bacter gallaeciensis, Phaeobacter inhibens, Leisingera aqui-marina, Tropicibacter litoreus, Sulfitobacter pseudonitzschiae, and Pseudoseohaeicola caenipelagi. Phylogenetic trees based on 16S rRNA gene sequences showed that strain JDTF-65T forms an independent lineage within the radiation enclosed by the family Rhodobacteraceae. Strain JDTF-65T contained Q-10 as the predominant ubiquinone and C18:1 ω7c as the major fatty acid. The major polar lipids of strain JDTF-65T were phosphatidylcholine, phosphatidylethanolamine, phos-phatidylglycerol, one unidentified aminolipid, and one un-identified lipid. The DNA G+C content of strain JDTF-65T was 56.8 mol% and its DNA-DNA relatedness values with the type strains of the phylogenetically related species were 13– 27%. Differential phenotypic properties revealed that strain JDTF-65T is separated from representatives of some phylo-genetically related taxa. On the basis of the data presented, strain JDTF-65T represents a new genus and species within the family Rhodobacteraceae, for which the name Jindonia aestuariivivens gen. nov., sp. nov. is proposed. The type strain of Jindonia aestuariivivens is JDTF-65T (=KCTC 52564T =NBRC 112534T).

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    Su-Won Jeong, Jeong Eun Han, June-Young Lee, Ji-Ho Yoo, Do-Yeon Kim, In Chul Jeong, Jee-Won Choi, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Euon Jung Tak, Hojun Sung, Hyun Sik Kim, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
    Journal of Microbiology.2022; 60(6): 576.     CrossRef
  • Kangsaoukella pontilimi gen. nov., sp. nov., a new member of the family Rhodobacteraceae isolated from a tidal mudflat
    Soon Dong Lee, Hanna Choe, Ji-Sun Kim, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5235.     CrossRef
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    International Journal of Systematic and Evolutionary Microbiology .2018; 68(7): 2158.     CrossRef
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    Current Microbiology.2018; 75(11): 1516.     CrossRef
Deinococcus sedimenti sp. nov. isolated from river sediment
Jae-Jin Lee , Yeon-Hee Lee , Su-Jin Park , Sangyong Lim , Sun-Wook Jeong , Seung-Yeol Lee , Sangkyu Park , Hyo-Won Choi , Myung Kyum Kim , Hee-Young Jung
J. Microbiol. 2016;54(12):802-808.   Published online November 26, 2016
DOI: https://doi.org/10.1007/s12275-016-6361-8
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AbstractAbstract PDF
A novel Gram-positive, oval-shaped, non-motile bacterium designated strain 16F1LT was isolated from sediment collected from the Han River in Seoul, Republic of Korea. Based on the 16S rRNA gene sequence (1,448 bp), this strain was identified as a member of the genus Deinococcus that belongs to the class Deinococci. Similarities in the 16S rRNA gene sequence were shown with Deinococcus daejeonensis MJ27T (99.0%), D. grandis DSM 3963T (98.1%), D. radiotolerans C1T (97.5%), and D. caeni Ho-08T (97.2%). Strain 16F1LT was classified as a different genomic species from closely related Deinococcus members, based on less than 70% DNA-DNA relatedness. Genomic DNA G+C content of strain 16F1LT was 67.2 mol%. Strain 16F1LT was found to grow at temperatures of 10–37°C (optimum 25°C) and pH 7–8 (optimum pH 7) on R2A medium, and was catalase-positive and oxidase-negative. Strain 16F1LT showed resistance to gamma radiation (D10 > 2 kGy). In addition, this strain had the following chemotaxonomic characteristics: the major fatty acids were C15:1 ω6c and C16:1 ω7c; the polar lipid profile contained phosphoglycolipids, unknown aminophospholipids, an unknown aminoglycolipid, unknown aminolipids, an unknown glycolipid, an unknown phospholipid, and an unknown polar lipid; the major quinone was MK-8. Phylogenetic, genotypic, phenotypic, and chemotaxonomic characteristics indicated that strain 16F1LT represents a novel species within the genus Deinococcus, for which the name Deinococcus sedimenti sp. nov. is proposed. The type strain is 16F1LT (=KCTC 33796T =JCM 31405T).

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  • Insights into the radiation and oxidative stress mechanisms in genus Deinococcus
    Nirjara Singhvi, Chandni Talwar, Shekhar Nagar, Helianthous Verma, Jasvinder Kaur, Nitish Kumar Mahato, Nabeel Ahmad, Krishnendu Mondal, Vipin Gupta, Rup Lal
    Computational Biology and Chemistry.2024; 112: 108161.     CrossRef
  • Deinococcus fonticola sp. nov., isolated from a radioactive thermal spring in Hungary
    Judit Makk, Nóra Tünde Enyedi, Erika Tóth, Dóra Anda, Attila Szabó, Tamás Felföldi, Peter Schumann, Judit Mádl-Szőnyi, Andrea K. Borsodi
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(6): 1724.     CrossRef
  • Deinococcus arcticus sp. nov., isolated from Silene acaulis rhizosphere soil of the Arctic tundra
    Xin-Peng Wang, Chang-Ming Li, Yong Yu, Hui-Rong Li, Zong-Jun Du, Da-shuai Mu
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(11): 3437.     CrossRef
  • Removal of Pb(II) by Pellicle-Like Biofilm-Producing Methylobacterium hispanicum EM2 Strain from Aqueous Media
    Sun-Wook Jeong, Hyo Kim, Jung Yang, Yong Choi
    Water.2019; 11(10): 2081.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M Garrity
    International Journal of Systematic and Evolutionary Microbiology .2017; 67(5): 1095.     CrossRef
Deinococcus seoulensis sp. nov., a bacterium isolated from sediment at Han River in Seoul, Republic of Korea
Jae-Jin Lee , Yeon-Hee Lee , Su-Jin Park , Sangyong Lim , Sun-Wook Jeong , Seung-Yeol Lee , Young-Je Cho , Myung Kyum Kim , Hee-Young Jung
J. Microbiol. 2016;54(8):537-542.   Published online August 2, 2016
DOI: https://doi.org/10.1007/s12275-016-6253-y
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AbstractAbstract PDF
Strain 16F1ET was isolated from a 3-kGy-irradiated sediment sample collected at Han River in Seoul, Republic of Korea. Cells of this strain were observed to be Gram-positive, pililike structure, and short rod shape, and colonies were red in color. The strain showed the highest degree of 16S rRNA gene sequence similarity to Deinococcus aquaticus PB314T (98.8%), Deinococcus depolymerans TDMA-24T (98.1%), Deinococcus caeni Ho-08T (98.0%), and Deinococcus grandis DSM 3963T (97.0%). 16S rRNA gene sequence analysis identified this strain as a member of the genus Deinococcus (Family: Deinococcaceae). The genomic DNA G+C content of strain 16F1ET was 66.9 mol%. The low levels of DNA-DNA hybridization (< 56.2%) with the species mentioned above identified strain 16F1ET as a novel Deinococcus species. Its oxidase and catalase activities as well as the production of acid from glucose were positive. Growth of the strain was observed at 10–37°C (optimum: 20–30°C) and pH 4–10 (optimum: pH 7–8). The cells tolerated less than 5% NaCl and had low resistance to gamma radiation (D10 < 4 kGy). Strain 16F1ET possessed the following chemotaxonomic characteristics: C16:0, C15:1 ω6c, and C16:1 ω7c as the major fatty acids; phosphoglycolipid as the predominant polar lipid; and menaquinone-8 as the predominant respiratory isoprenoid quinone. Based on the polyphasic evidence, as well as the phylogenetic, genotypic, phenotypic, and chemotaxonomic characterization results, strain 16F1ET (=KCTC 33793T =JCM 31404T) is proposed to represent the type strain of a novel species, Deinococcus seoulensis sp. nov.

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    Nirjara Singhvi, Chandni Talwar, Shekhar Nagar, Helianthous Verma, Jasvinder Kaur, Nitish Kumar Mahato, Nabeel Ahmad, Krishnendu Mondal, Vipin Gupta, Rup Lal
    Computational Biology and Chemistry.2024; 112: 108161.     CrossRef
  • Complete Genome Sequence of Deinococcus aquaticus Type Strain PB314, a Non-Extremophile Representative of the Genus Deinococcus
    Chad Albert, Jonathan Hill, Leilani Boren, Stacy Scholz-Ng, Nahid Fatema, Ryan Grosso, Erica Soboslay, James Tuohy, David A. Baltrus
    Microbiology Resource Announcements.2023;[Epub]     CrossRef
  • Deinococcus betulae sp. nov. and Deinococcus arboris sp. nov., novel bacteria isolated from bark of birch tree (Betula platyphylla)
    Seokhyeon Bae, Heeyoung Kang, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Deinococcus taeanensis sp. nov., a Radiation-Resistant Bacterium Isolated from a Coastal Dune
    Ji Hee Lee, Jong-Hyun Jung, Min-Kyu Kim, Sangyong Lim
    Current Microbiology.2022;[Epub]     CrossRef
  • Microbial Monitoring in the EDEN ISS Greenhouse, a Mobile Test Facility in Antarctica
    Jana Fahrion, Carina Fink, Paul Zabel, Daniel Schubert, Mohamed Mysara, Rob Van Houdt, Bernhard Eikmanns, Kristina Beblo-Vranesevic, Petra Rettberg
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Deinococcus arcticus sp. nov., isolated from Silene acaulis rhizosphere soil of the Arctic tundra
    Xin-Peng Wang, Chang-Ming Li, Yong Yu, Hui-Rong Li, Zong-Jun Du, Da-shuai Mu
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(11): 3437.     CrossRef
  • Specific Members of the Gut Microbiota are Reliable Biomarkers of Irradiation Intensity and Lethality in Large Animal Models of Human Health
    Franck Carbonero, Alba Mayta, Mathilde Bolea, Jiang-Zhou Yu, Matt Lindeblad, Alex Lyubimov, Flavia Neri, Erzsebet Szilagyi, Brett Smith, Lisa Halliday, Amelia Bartholomew
    Radiation Research.2018; 191(1): 107.     CrossRef
  • Deinococcus rufus sp. nov., isolated from soil near an iron factory
    Qian Wang, Yali Song, Lina Choi, Hongyu Liu, Gejiao Wang, Mingshun Li
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(5): 1622.     CrossRef
  • Deinococcus knuensis sp. nov., a bacterium isolated from river water
    Jae-Jin Lee, Yeon-Hee Lee, Su-Jin Park, Seung-Yeol Lee, Sangkyu Park, Dae Sung Lee, In-Kyu Kang, Leonid N. Ten, Hee-Young Jung
    Antonie van Leeuwenhoek.2017; 110(3): 407.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2016; 66(11): 4299.     CrossRef
Research Support, Non-U.S. Gov'ts
Abyssisolibacter fermentans gen. nov. sp. nov., isolated from deep sub-seafloor sediment
Wonduck Kim , Jung-Hyun Lee , Kae Kyoung Kwon
J. Microbiol. 2016;54(5):347-352.   Published online April 20, 2016
DOI: https://doi.org/10.1007/s12275-016-6048-1
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AbstractAbstract PDF
A Gram-staining-negative, thin rod-shaped, anaerobic bacterium designated MCWD3T was isolated from sediment of the deep sea in Ulleung Basin, East Sea, Korea. The ranges of temperature, pH and NaCl for growth of this strain were 15– 40°C (optimum 29°C), 5.0–10.0 (optimum pH 6.5), and 1–5%, respectively. The major fatty acids were iso-C15:0 (30%) and iso-C15:0 dimethyl acetal (17%). The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and unidentified aminophospholipids, phospholipids, and aminolipids. The fermentation product from yeast extract was acetate. Phylogenetic analysis based on 16S rRNA genes indicated that the isolate was related to Sporosalibacterium faouarense (92.8% sequence identity), Clostridiisalibacter paucivorans (92.6%), and Brassicibacter mesophilus (92.4%). However, the isolate was differentiated from these genera by both physiological and chemotaxonomical properties. On the basis of a polyphasic taxonomic analysis, we propose that MCWD3T represents a novel taxon with the name Abyssisolibacter fermentans gen. nov. sp. nov.

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  • Novel Multitube Sampler for Collecting Pressure-Retaining Sediment Samples From the Abyssal Seafloor
    Guangping Liu, Jing Yang, Yongping Jin, Shanqiang Jiang, Youduo Peng, Wenbo Tang
    IEEE Journal of Oceanic Engineering.2025; 50(4): 2397.     CrossRef
  • Validation List no. 220. Valid publication of new names and new combinations effectively published outside the IJSEM
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    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • The Phylogeny, Metabolic Potentials, and Environmental Adaptation of an Anaerobe, Abyssisolibacter sp. M8S5, Isolated from Cold Seep Sediments of the South China Sea
    Ying Liu, Songze Chen, Jiahua Wang, Baoying Shao, Jiasong Fang, Junwei Cao
    Microorganisms.2023; 11(9): 2156.     CrossRef
  • Description of Fervidibacillus gen. nov. with Two Species, Fervidibacillus albus sp. nov., and Fervidibacillus halotolerans sp. nov., Isolated from Tidal Flat Sediments and Emendation of Misclassificed Taxa in the Genus Caldibacillus
    Sung-Hyun Yang, Mi-Jeong Park, Hyun-Myung Oh, Kae Kyoung Kwon
    Journal of Microbiology.2023; 61(2): 175.     CrossRef
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    Neak Muhammad, Tra T.H. Nguyen, Yong-Jae Lee, Jaeho Ko, Forbes Avila, Song-Gun Kim
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • A Deep-Sea Sediment Sampling System: Design, Analysis and Experimental Verification
    Guangping Liu, Yongping Jin, Youduo Peng, Buyan Wan, Kun Xie
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  • Isolation and characterization of anaerobic microbes from marine environments in Korea
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Niabella ginsenosidivorans sp. nov., isolated from compost
Kwon-Jung Yi , Wan-Taek Im , Dong-Woon Kim , Qing Mei Liu , Soo-Ki Kim
J. Microbiol. 2015;53(11):762-766.   Published online October 28, 2015
DOI: https://doi.org/10.1007/s12275-015-5463-z
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AbstractAbstract
A Gram-reaction negative, strictly aerobic, non-motile, orange colored, and rod-shaped bacterium (designated BS26T) isolated from compost, was characterized by a polyphasic approach to clarify its taxonomic position. Strain BS26T was observed to grow optimally at 25–30°C and at pH 7.0 on R2A and nutrient media. Strain BS26T showed β-glucosidase activity that was responsible for its ability to transform ginsenoside Rb1 (one of the active components of ginseng) to ginsenoside compound-K (C-K). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain BS26T belongs to the genus Niabella of family Chitinophagaceae and was most closely related to Niabella soli DSM 19437T (94.5% similarity), N. yanshanensis CCBAU 05354T (94.3%), and N. aurantiaca DSM 17617T (93.8%). The G+C content of genomic DNA was 47.3 mol%. Chemotaxonomic data [predominant isoprenoid quinone-MK-7, major fatty acids–iso-C15:0, iso-C15:1 G, iso-C17:0 3-OH, and summed feature 3 (comprising C16:1 ω7c and/or C16:1 ω6c)] supported the affiliation of strain BS26T to the genus Niabella. However, strain BS26T could be differentiated genotypically and phenotypically from the recognized species of the genus Niabella. The novel isolate therefore represents a novel species, for which the name Niabella ginsenosidivorans sp. nov. is proposed, with the type strain BS26T (=KACC 16620T =JCM 18199T).

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  • Niabella digestorum sp. nov., a High Cell-Surface Hydrophobic Bacterium Isolated from Waste Digestion System
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    Current Microbiology.2024;[Epub]     CrossRef
  • Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland
    Sheng-Zhi Guo, Tong Wu, Hai-Zhen Zhu, Lei Yan, Zhi-Pei Liu, De-Feng Li, Cheng-Ying Jiang, Shuang-Jiang Liu, Xi-Hui Shen
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(5): 1247.     CrossRef
  • Niabella hibiscisoli sp. nov., isolated from soil of a Rose of Sharon garden
    Hien T. T. Ngo, Huan Trinh, Zheng-Fei Yan, Gabriela Moya, MooChang Kook, Tae-Hoo Yi
    International Journal of Systematic and Evolutionary Microbiology.2017; 67(4): 784.     CrossRef
  • Niabella aquatica sp. nov., isolated from lake water
    Muhammad Zubair Siddiqi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology.2016; 66(8): 2774.     CrossRef
Chujaibacter soli gen. nov., sp. nov., isolated from soil
Soo-Jin Kim , Jae-Hyung Ahn , Hang-Yeon Weon , Seung-Beom Hong , Soon-Ja Seok , Jeong-Seon Kim , Soon-Wo Kwon
J. Microbiol. 2015;53(9):592-597.   Published online August 27, 2015
DOI: https://doi.org/10.1007/s12275-015-5136-y
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AbstractAbstract PDF
A Gram-staining-negative, aerobic, non-flagellated, rod-shaped bacterial strain, KIS55-21T, was isolated from a soil sample from Chuja Island, Jeju Province, Republic of Korea. Strain KIS55-21T grew optimally at pH 7.0, at 28–30°C and in the presence of 0% (w/v) NaCl. Neighbor-joining and maximum-likelihood trees based on the 16S rRNA gene sequences revealed that strain KIS55-21T fell within the family Xanthomonadaceae and was closely related to Metallibacterium scheffleri DKET. Strain KIS55-21T exhibited the highest 16S rRNA gene sequence similarity (92.6%) to that of M. scheffleri DKET, with similarities of less than 92.0% to those of the genera Dokdonella, Rhodanobacter, Aquimonas, and Frateuria. Strain KIS55-21T contained ubiquinone-8 (Q-8) as the predominant ubiquinone, iso-C17:0, summed feature 9 (iso-C17:1 ω9c and/or C16:0 10-methyl), anteiso-C17:0 and C16:0 as the major fatty acids, and phosphatidylethanolamine, aminophospholipid, phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylmonomethylethanolamine as the main polar lipids. The DNA G+C content of strain KIS55-21T was 65.9 mol%. Differential phenotypic and chemotaxonomic properties and phylogenetic data of strain KIS55-21T demonstrated that this strain is distinguishable from closely related genera within the family Xanthomonadaceae. On the basis of the data presented, strain KIS55-21T is considered to represent a novel genus and species, for which the name Chujaibacter soli gen. nov., sp. nov. is proposed. The type strain is KIS55-21T (=KACC 16971T =DSM 28578T).

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    BMC Microbiology.2025;[Epub]     CrossRef
  • Soil and cherry bacterial communities predict flavor on coffee farms
    Steve Kutos, Ruth E. Bennett, Danilo Santos, Esteban Botero-Delgadillo, Carly R. Muletz-Wolz
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    Science of The Total Environment.2024; 920: 170978.     CrossRef
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    Jiyuan Pan, Qinglong Dong, Haibin Wen, Yang Liu, Xiaojie Wang, Yanan Liu, Xuemei Zhang, Chengmin Shi, Dan Zhao, Xiujun Lu
    Molecular Biotechnology.2024; 66(9): 2219.     CrossRef
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    Yu Zhang, Qiuxia Yin, Lingling Guo, Jiayi Guo, Yuanhui Chen, Mingtang Li
    Environmental Geochemistry and Health.2024;[Epub]     CrossRef
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    Journal of Environmental Radioactivity.2023; 258: 107090.     CrossRef
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    Microbial Ecology.2023; 86(3): 1632.     CrossRef
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    Biodegradation.2023; 34(3): 283.     CrossRef
  • Thermomonas paludicola sp. nov., isolated from a lotus wetland
    Mirae Kim, Miri S. Park, Ilnam Kang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Effects of Tetracycline and Copper on Water Spinach Growth and Soil Bacterial Community
    Jiadan Tao, Jiayu Wang, Xiongkai Zheng, Aiping Jia, Mengyao Zou, Jinlian Zhang, Xueqin Tao
    Processes.2022; 10(6): 1135.     CrossRef
  • Effect of the coexistence of endosulfan on the lindane biodegradation by Novosphingobium barchaimii and microbial enrichment cultures
    Siang Chen Wu, Bo-Sheng Chang, Yu-Ying Li
    Chemosphere.2022; 297: 134063.     CrossRef
  • Soil characteristics and microbial community response in rare earth mining areas in southern Jiangxi Province, China
    Zhentian Liang, Wenjing Zhang, Yuesuo Yang, Jincai Ma, Shuxin Li, Zong Wen
    Environmental Science and Pollution Research.2021; 28(40): 56418.     CrossRef
  • Effect of Coexistent Endosulfan on the Biodegradation of Lindane by Novosphingobium Barchaimii and Microbial Enrichment Cultures
    Siang Chen Wu, Bo-Sheng Chang, Yu-Ying Li
    SSRN Electronic Journal.2021;[Epub]     CrossRef
  • Robust Nitritation Sustained by Acid-Tolerant Ammonia-Oxidizing Bacteria
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    Environmental Science & Technology.2021; 55(3): 2048.     CrossRef
  • Survival strategies and dominant phylotypes of maize-rhizosphere microorganisms under metal(loid)s contamination
    Jingye She, Jin Wang, Xudong Wei, Qiong Zhang, Zhenyu Xie, Jingzi Beiyuan, Enzong Xiao, Xiao Yang, Juan Liu, Yuting Zhou, Tangfu Xiao, Yuxuan Wang, Nan Chen, Daniel C.W. Tsang
    Science of The Total Environment.2021; 774: 145143.     CrossRef
  • Characterization of sludge reduction and bacterial community dynamics in a pilot-scale multi-stage digester system with prolonged sludge retention time
    Jeonghee Yun, Hee-Wook Ryu, Hyung Pan Kim, Kyung-Suk Cho
    Bioprocess and Biosystems Engineering.2020; 43(7): 1171.     CrossRef
  • Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory
    Lingmin Jiang, Dexin Wang, Jung-Sook Lee, Dae-Hyuk Kim, Jae Cheol Jeong, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
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  • Long‐term fertilization regimes change soil nitrification potential by impacting active autotrophic ammonia oxidizers and nitrite oxidizers as assessed by DNA stable isotope probing
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    Environmental Microbiology.2019; 21(4): 1224.     CrossRef
  • Maximum Influent Salinity Affects the Diversity of Mineral-Precipitation-Mediating Bacterial Communities in Membrane Biofilm of Hybrid Moving Bed Biofilm Reactor-Membrane Bioreactor
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  • List of new names and new combinations previously effectively, but not validly, published
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Aliisedimentitalea scapharcae gen. nov., sp. nov., isolated from ark shell Scapharca broughtonii
Young-Ok Kim , Sooyeon Park , Bo-Hye Nam , Dong-Gyun Kim , Sung-Min Won , Ji-Min Park , Jung-Hoon Yoon
J. Microbiol. 2015;53(8):495-502.   Published online July 31, 2015
DOI: https://doi.org/10.1007/s12275-015-5075-7
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AbstractAbstract
A Gram-negative, aerobic, non-spore-forming, motile and ovoid or rod-shaped bacterial strain, designated MA2-16T, was isolated from ark shell (Scapharca broughtonii) collected from the South Sea, South Korea. Strain MA2-16T was found to grow optimally at 30캜, at pH 7.0?.0 and in the presence of 2.0% (w/v) NaCl. Neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences revealed that strain MA2-16T clustered with the type strain of Sedimentitalea nanhaiensis. The novel strain exhibited a 16S rRNA gene sequence similarity value of 97.1% to the type strain of S. nanhaiensis. In the neighbour- joining phylogenetic tree based on gyrB sequences, strain MA2-16T formed an evolutionary lineage independent of those of other taxa. Strain MA2-16T contained Q-10 as the predominant ubiquinone and C18:1 ?c and 11-methyl C18:1 ?c as the major fatty acids. The major polar lipids of strain MA2-16T were phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, an unidentified aminolipid and an unidentified lipid. The DNA G+C content of strain MA2- 16T was 57.7 mol% and its DNA-DNA relatedness values with the type strains of S. nanhaiensis and some phylogenetically related species of the genera Leisingera and Phaeobacter were 13?4%. On the basis of the data presented, strain MA2-16T is considered to represent a novel genus and novel species within the family Rhodobacteraceae, for which the name Aliisedimentitalea scapharcae gen. nov., sp. nov. is proposed. The type strain is MA2-16T (=KCTC 42119T =CECT 8598T).

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  • Genomic profiling of biosynthetic potentials of medicinal secondary metabolites for ‘Aliisedimentitalea scapharcae’ KCTC 42119T, isolated from ark shell
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    Marine Genomics.2024; 76: 101124.     CrossRef
  • Jindonia aestuariivivens gen. nov., sp. nov., isolated from a tidal flat on the south-western sea in Republic of Korea
    Sooyeon Park, Sun Young Yoon, Min-Ji Ha, Jung-Hoon Yoon
    Journal of Microbiology.2017; 55(6): 421.     CrossRef
  • Litorisediminivivens gilvus gen. nov., sp. nov., isolated from a tidal flat
    Sooyeon Park, Min-Ji Ha, Yong-Taek Jung, Jung-Hoon Yoon
    International Journal of Systematic and Evolutionary Microbiology.2016; 66(11): 4681.     CrossRef
Sphingosinicella ginsenosidimutans sp. nov., with ginsenoside converting activity
Jin-Kwang Kim , Myung-Suk Kang , Sung Chul Park , Kyeng-Min Kim , Kangduk Choi , Min-Ho Yoon , Wan-Taek Im
J. Microbiol. 2015;53(7):435-441.   Published online June 27, 2015
DOI: https://doi.org/10.1007/s12275-015-5087-3
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AbstractAbstract
The Gram-reaction-negative, strictly aerobic, non-motile, nonspore- forming, and rod-shaped bacterial strain designated BS11T was isolated from the compost and its taxonomic position was investigated by using a polyphasic approach. Strain BS11T grew optimally at 30?7캜 and at pH 7.0 in the absence of NaCl on nutrient agar. Strain BS11T displayed ?glucosidase activity that was responsible for its ability to transform ginsenoside Rb1 (one of the dominant active components of ginseng) to Rd. On the basis of 16S rRNA gene sequence similarity, strain BS11T was shown to belong to the family Sphingomonadaceae and was related to Sphingosinicella vermicomposti YC7378T (96.3% sequence similarity), S. xenopeptidilytica 3-2W4T (96.2%), S. microcystinivorans Y2T (96.1%), and S. soli KSL-125 T (95.9%). The G+C content of the genomic DNA was 64.9%. The major menaquinone was Q-10 and the major fatty acids were summed feature 7 (comprising C18:1 ?c/?t/?2t; 40.6%), C16:0 (22.5%), C17:1 ?c (13.7%) and C17:0 (9.1%). DNA and chemotaxonomic data supported the affiliation of strain BS11T to the genus Sphingosinicella. Strain BS11T could be differentiated genotypically and phenotypically from the recognized species of the genus Sphingosinicella. The novel isolate therefore represents a novel species, for which the name Sphingosinicella ginsenosidimutans sp. nov. is proposed, with the type strain BS11T (=KACC 16619T =JCM 18201T).

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    Current Microbiology.2025;[Epub]     CrossRef
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    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Isolation and characterization of a novel glycoside hydrolase positive bacterial strain named Terrimonas ginsenosidimutans sp. nov. with ginsenoside-converting activity
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    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Evaluation of agricultural soil health after applying pyraclostrobin in wheat/maize rotation field based on the response of soil microbes
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    Agriculture, Ecosystems & Environment.2022; 340: 108186.     CrossRef
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    Dong Wang, Lei Dong, Neeli Habib, Feng Liu, Sohail Ahmad Jan, Jian-Yu Jiao, Min Xiao, Nimaichand Salam, Wen-Jun Li
    Current Microbiology.2022;[Epub]     CrossRef
  • Histidinibacterium aquaticum sp. nov., Isolated from Salt-Field Sea Water
    Kyu-Hang Lee, Jin-Sook Park
    Current Microbiology.2022;[Epub]     CrossRef
  • Isolation, characterisation and genome analysis of a novel ginsenosides hydrolysing bacterium Ginsengibacter hankyongi gen. nov., sp. nov. isolated from soil
    Muhammad Zubair Siddiqi, Md. Amdadul Huq, Wan-Taek Im
    Antonie van Leeuwenhoek.2021; 114(1): 11.     CrossRef
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    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
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    Muhammad Zubair Siddiqi, Jun Mo Yeon, Hanna Choi, Jae Hag Lee, Sang Yong Kim, Ji-Hyang Wee, Wan Taek Im
    Current Microbiology.2020; 77(9): 2002.     CrossRef
  • Hankyongella ginsenosidimutans gen. nov., sp. nov., isolated from mineral water with ginsenoside coverting activity
    Muhammad Zubair Siddiqi, Wan-Taek Im
    Antonie van Leeuwenhoek.2020; 113(5): 719.     CrossRef
  • Corallincola spongiicola sp. nov., isolated from sponge
    Heejae Choi, Wan-Taek Im, Jin-Sook Park
    Antonie van Leeuwenhoek.2020; 113(5): 643.     CrossRef
  • List of new names and new combinations previously effectively, but not validly, published
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(5): 1247.     CrossRef
  • Phenylobacterium hankyongense sp. nov., isolated from ginseng field soil
    Gyu-Min Choi, Soon-youl Lee, Kang Duk Choi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(1): 125.     CrossRef
  • Tardibacter chloracetimidivorans gen. nov., sp. nov., a novel member of the family Sphingomonadaceae isolated from an agricultural soil from Jeju Island in Republic of Korea
    Hyosun Lee, Dong-Uk Kim, Sooyeon Park, Jung-Hoon Yoon, Jae-Hyung Ahn, Jong-Ok Ka
    Journal of Microbiology.2018; 56(5): 324.     CrossRef
  • Aquimarina spongiicola sp. nov., isolated from spongin
    Kang Duk Choi, Ga-Eun Lee, Jin-Sook Park
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(4): 990.     CrossRef
  • Olivibacter ginsenosidimutans sp nov., with ginsenoside converting activity isolated from compost, and reclassification of Pseudosphingobacterium domesticum as Olivibacter domesticus comb. nov
    Muhammad Zubair Siddiqi, Qingmei Liu, Soon Youl Lee, kang Duk Choi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(8): 2509.     CrossRef
  • Vibrio hannami sp. nov., Isolated from Seawater
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    Current Microbiology.2018; 75(3): 278.     CrossRef
  • Ciceribacter azotifigens sp. nov., a nitrogen-fixing bacterium isolated from activated sludge
    Muhammad Zubair Siddiqi, Gyu-Min Choi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(2): 482.     CrossRef
  • Paraburkholderia azotifigens sp. nov., a nitrogen-fixing bacterium isolated from paddy soil
    Gyu-Min Choi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(1): 310.     CrossRef
  • Flavobacterium hankyongi sp. nov., isolated from activated sludge
    Qingzhen Liu, Muhammad Zubair Siddiqi, Qingmei Liu, Md. Amdadul Huq, Soon Yeol Lee, Kang-Duk Choi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2018; 68(5): 1732.     CrossRef
  • Lysobacter spongiae sp. nov., isolated from spongin
    Heejae Choi, Wan-Taek Im, Jin-Sook Park
    Journal of Microbiology.2018; 56(2): 97.     CrossRef
  • Sphingomonas montis sp. nov., Isolated from Forest Soil of Low-Altitude Mountain
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    Current Microbiology.2018; 75(10): 1299.     CrossRef
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  • Bacillus spongiae sp. nov., isolated from sponge of Jeju Island
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    Journal of Microbiology.2018; 56(4): 217.     CrossRef
  • Sphingomonas aquatica sp. nov., isolated from tap water
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    International Journal of Systematic and Evolutionary Microbiology.2017; 67(4): 845.     CrossRef
  • Daejeonia ginsenosidivorans gen. nov., sp. nov., a ginsenoside-transforming bacterium isolated from lake water
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    International Journal of Systematic and Evolutionary Microbiology .2017; 67(8): 2665.     CrossRef
  • Pseudaminobacter granuli sp. nov., isolated from granules used in a wastewater treatment plant
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    Journal of Microbiology.2017; 55(8): 607.     CrossRef
  • Paenibacillus azotifigens sp. nov., a novel nitrogen-fixing bacterium isolated from paddy soil
    Muhammad Zubair Siddiqi, Gyu-Min Choi, Kang Duk Choi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology.2017; 67(12): 4917.     CrossRef
  • Mucilaginibacter ginsenosidivorans sp. nov., Isolated from Soil of Ginseng Field
    Minseok M. Kim, Muhammad Zubair Siddiqi, Wan-Taek Im
    Current Microbiology.2017; 74(12): 1382.     CrossRef
  • Mucilaginibacter hankyongensis sp. nov., isolated from soil of ginseng field Baekdu Mountain
    Qingmei Liu, Muhammad Zubair Siddiqi, Mi-Sun Kim, Sang Yong Kim, Wan-Taek Im
    Journal of Microbiology.2017; 55(7): 525.     CrossRef
  • Panacibacter ginsenosidivorans gen. nov., sp. nov., with ginsenoside converting activity isolated from soil of a ginseng field
    Muhammad Zubair Siddiqi, Siddiqi Muhammad Shafi, Kang Duk Choi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2016; 66(10): 4039.     CrossRef
  • Marmoricola ginsengisoli sp. nov. and Marmoricola pocheonensis sp. nov. isolated from a ginseng-cultivating field
    Hye-Yeon Lee, Qingmei Liu, Myung-Suk Kang, Soo-Ki Kim, Soon-Youl Lee, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology.2016; 66(5): 1996.     CrossRef
  • Pseudobacter ginsenosidimutans gen. nov., sp. nov., isolated from ginseng cultivating soil
    Muhammad Zubair Siddiqi, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2016; 66(9): 3449.     CrossRef
  • Anseongella ginsenosidimutans gen. nov., sp. nov., isolated from soil cultivating ginseng
    Muhammad Zubair Siddiqi, Qingmei Liu, Myung-Suk Kang, Minseok S. Kim, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2016; 66(3): 1125x.     CrossRef
  • Sphingobacterium jejuense sp. nov., with ginsenoside-converting activity, isolated from compost
    Muhammad Zubair Siddiqi, Siddiqi Muhammad Shafi, Kang Duk Choi, Wan-Taek Im, Zubair Aslam
    International Journal of Systematic and Evolutionary Microbiology.2016; 66(11): 4433.     CrossRef
  • Compostibacter hankyongensis gen. nov.,  sp. nov., isolated from compost
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Journal Article
Nocardioides paucivorans sp. nov. Isolated from Soil
Jae-Hyung Ahn , Jun-Muk Lim , Soo-Jin Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
J. Microbiol. 2014;52(12):990-994.   Published online November 29, 2014
DOI: https://doi.org/10.1007/s12275-014-4587-x
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AbstractAbstract PDF
One strain, designated KIS31-44T, was isolated from a soil sample collected from Dokdo Island, South Korea. The strain is Gram-stain-positive, aerobic, non-spore-forming and nonmotile. It grows optimally at 28–30°C, at pH 7.0 and 0% NaCl. 16S rRNA gene sequence analysis showed that strain KIS31-44T belonged to the genus Nocardioides and shared the highest sequence similarities with Nocardioides aestuarii JC2056T (95.5%) and Nocardioides terrae VA15T (95.0%). The major fatty acids of strain KIS31-44T were C17:1 ω6c, C18:1 ω9c, summed feature 3 (C16:1 ω6c and/or C16:1 ω7c), iso-C16:0, C18:0 10-methyl (TBSA), C16:0 2-OH, C17:0 10-methyl, and iso-C16:1 H. The major isoprenoid quinone was MK-8 (H4). The strain contained diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol as the major polar lipids. The peptidoglycan structure was A3γ-type with LL-diaminopimelic acid. Based on these data, the isolate represents one novel species in the genus Nocardioides, for which the name Nocardioides paucivorans sp. nov. (type strain KIS31-44T =DSM 27142T =KACC 17309T) is proposed.

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  • Nocardioides alcanivorans sp. nov., a novel hexadecane-degrading species isolated from plastic waste
    Julia Mitzscherling, Joana MacLean, Daniel Lipus, Alexander Bartholomäus, Kai Mangelsdorf, André Lipski, Vladimir Roddatis, Susanne Liebner, Dirk Wagner
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Nocardioides sambongensis sp. nov., isolated from Dokdo Islands soil
    Ye-Ji Hwang, Jin-Soo Son, Soo-Yeong Lee, Yuxi He, YoungJae Jo, Jae-Ho Shin, Sa-Youl Ghim
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 16.     CrossRef
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    Bao-Zhu Fang, Ming-Xian Han, Jian-Yu Jiao, Xiao-Tong Zhang, Yuan-Guo Xie, Wael N. Hozzein, Dalal Hussien M. Alkhalifah, Min Xiao, Wen-Jun Li
    Antonie van Leeuwenhoek.2019; 112(6): 857.     CrossRef
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    Guo-Qing Zhang, Qing Liu, Hong-Can Liu, Yu-Guang Zhou, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(8): 2329.     CrossRef
  • A strategy for securing unique microbial resources – focusing on Dokdo islands-derived microbial resources
    Jong Myong Park, Ji Won Hong, Jin-Soo Son, Ye-Ji Hwang, Hyun-Min Cho, Young-Hyun You, Sa-Youl Ghim
    Israel Journal of Ecology and Evolution.2018; 64(1-4): 1.     CrossRef
  • Nocardioides cavernae sp. nov., an actinobacterium isolated from a karst cave
    Ming-Xian Han, Bao-Zhu Fang, Ye Tian, Wan-Qin Zhang, Jian-Yu Jiao, Lan Liu, Zi-Tong Zhang, Min Xiao, Da-Qiao Wei, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2017; 67(3): 633.     CrossRef
  • Nocardioides thalensis sp. nov., isolated from a desert
    Inam Ullah Khan, Firasat Hussain, Neeli Habib, Min Xiao, Iftikhar Ahmed, Arshia Amin, Xiao-Yang Zhi, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2017; 67(8): 2848.     CrossRef
  • Nocardioides baekrokdamisoli sp. nov., isolated from soil of a crater lake
    Keun Chul Lee, Kwang Kyu Kim, Jong-Shik Kim, Dae-Shin Kim, Suk-Hyung Ko, Seung-Hoon Yang, Yong Kook Shin, Jung-Sook Lee
    International Journal of Systematic and Evolutionary Microbiology.2016; 66(10): 4231.     CrossRef
  • Nocardioides pakistanensis sp. nov., isolated from a hot water spring of Tatta Pani in Pakistan
    Arshia Amin, Iftikhar Ahmed, Neeli Habib, Saira Abbas, Min Xiao, Wael N. Hozzein, Wen-Jun Li
    Antonie van Leeuwenhoek.2016; 109(8): 1101.     CrossRef
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    Yan Zhao, Qingmei Liu, Myung-Suk Kang, Fengxie Jin, Hongshan Yu, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_12): 4857.     CrossRef
Research Support, Non-U.S. Gov't
Citrimicrobium luteum gen. nov., sp. nov., Aerobic Anoxygenic Phototrophic Bacterium Isolated from the Gut of a Sea Cucumber Stichopus japonicus
Hong-Joo Jung , In-Tae Cha , Kyung June Yim , Hye Seon Song , Kichul Cho , Daekyung Kim , Hae-Won Lee , Jae Kook Lee , Myung-Ji Seo , Seong Woon Roh , Sung-Jae Lee
J. Microbiol. 2014;52(10):819-824.   Published online August 27, 2014
DOI: https://doi.org/10.1007/s12275-014-4136-7
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AbstractAbstract PDF
A Gram-stain negative, yellow-pigmented, motile, pleomorphic bacterium, designated strain CBA4602T, was isolated from the gut of the sea cucumber Stichopus japonicus, which was collected from Jeju Island in the Republic of Korea. In a phylogenetic analysis based on the 16S rRNA gene, strain CBA4602T belonged to the order Sphingomonadales in the class Alphaproteobacteria. The 16S rRNA gene sequence similarity between strain CBA4602T and ‘Citromicrobium bathyomarinum’ JF-1, the most closely related strain having nonvalidly published name, was 98.4%, followed by 95.2–96.7% identities with sequence of the other closest strains in the genus Erythrobacter. Strain CBA4602T had bacteriochlorophyll a and carotenoids. Strain CBA4602T grew in 0–10% (w/v) NaCl, at 10–42°C and pH 6.0–8.0, with optimal growth in 1–2% NaCl, at 30–37°C and pH 7.0. Strain CBA4602T was positive for catalase and oxidase activities and was able to hydrolyse gelatine and Tween 20 and 40, but not starch, Tween 80 or L-tyrosine. The G+C content of genomic DNA from strain CBA4602T was 68.0 mol% and Q-10 was the major detected isoprenoid quinone. The polar lipids were three unidentified phospholipids, three unidentified glycolipids, and two unidentified lipids. The dominant fatty acids were anteiso-C15:0, C16:0, anteiso-C17:0 and C18:0. As considering the current taxonomic status of the genus ‘Citromicrobium’ and polyphasic taxonomic analyses, strain CBA4602T represents a novel genus and species. The name Citrimicrobium luteum is proposed for the type strain CBA4602T (=KACC 17668T =JCM 19530T).

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  • Association of aerobic anoxygenic phototrophs and zebra mussels, Dreissena polymorpha, within the littoral zone of Lake Winnipeg
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Journal Article
Acinetobacter apis sp. nov., Isolated from the Intestinal Tract of a Honey Bee, Apis mellifera
Pil Soo Kim , Na-Ri Shin , Joon Yong Kim , Ji-Hyun Yun , Dong-Wook Hyun , Jin-Woo Bae
J. Microbiol. 2014;52(8):639-645.   Published online August 1, 2014
DOI: https://doi.org/10.1007/s12275-014-4078-0
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AbstractAbstract PDF
A novel Gram-negative, obligate aerobic, non-motile, and both coccobacillus- and bacillus-shaped bacterium, designated strain HYN18T, was isolated from the intestinal tract of a honey bee (Apis mellifera). The isolate was oxidasenegative and catalase-positive. Strain HYN18T showed optimum growth at 25°C, pH 6–7, and in the presence of 1% (w/v) NaCl in trypticase soy broth medium. The isolate was negative for hydrolyses of starch, casein, gelatin and urea, indole production from tryptone and hemolysis on sheep blood agar. A phylogenetic analysis based on the 16S rRNA gene and rpoB gene sequence showed that strain HYN18T was most closely related to Acinetobacter nectaris SAP 763.2T and A. boissieri SAP 284.1T with 98.3% and 98.1% similarity (16S rRNA gene), respectively, and 84.4% similarity with Acinetobacter nectaris SAP 763.2T (rpoB gene). The major cellular fatty acids were summed features 3 (comprising C16:1ω7c/C16:1ω6c), C12:0 and C16:0. The main isoprenoid quinone was ubiquinone-9 (Q-9). The polar lipids of strain HYN18T were phosphatidylethanolamine, three unidentified lipids, an unidentified phospholipid and an unidentified glycolipid. The DNA G+C content was 40.6 mol%. DNADNA hybridization experiments indicated less than 33 ± 10% relatedness to the closest phylogenetic species, Acinetobacter nectaris SAP 763.2T. Thus, the phenotypic, phylogenetic and genotypic analyses indicate that strain HYN18T is a novel species within the genus Acinetobacter, for which the name Acinetobacter apis is proposed. The type strain is HYN18T (=KACC 16906T =JCM 18575T).

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    Vivianna A. Sanchez, Tanya Renner, Lydia J. Baker, Tory A. Hendry, Michael J. Imperiale
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    Journal of Microbiology and Biotechnology.2025;[Epub]     CrossRef
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    Uludağ Arıcılık Dergisi.2025; 25(1): 171.     CrossRef
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    FEMS Microbiology Ecology.2024;[Epub]     CrossRef
  • A quantitative survey of the blueberry (Vacciniumspp.) culturable nectar microbiome: variation between cultivars, locations, and farm management approaches
    Caitlin C Rering, Arthur B Rudolph, Qin-Bao Li, Quentin D Read, Patricio R Muñoz, John J Ternest, Charles T Hunter
    FEMS Microbiology Ecology.2024;[Epub]     CrossRef
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    Arne Weinhold, Elisabeth Grüner, Alexander Keller
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  • New insights into honey bee viral and bacterial seasonal infection patterns using third-generation nanopore sequencing on honey bee haemolymph
    Cato Van Herzele, Sieglinde Coppens, Nick Vereecke, Sebastiaan Theuns, Dirk C. de Graaf, Hans Nauwynck
    Veterinary Research.2024;[Epub]     CrossRef
  • Purification and characterization of proteins from Manuka honey
    Anu Jose, Alanta Maria Binu, Eleeswa Celin Syrus, Joyal Elizabeth Baiju, Neema, Susan Jose, Aneena Mariya Abraham, Julie Jacob
    Materials Today: Proceedings.2023;[Epub]     CrossRef
  • Sugar Concentration, Nitrogen Availability, and Phylogenetic Factors Determine the Ability of Acinetobacter spp. and Rosenbergiella spp. to Grow in Floral Nectar
    José R. Morales-Poole, Clara de Vega, Kaoru Tsuji, Hans Jacquemyn, Robert R. Junker, Carlos M. Herrera, Chris Michiels, Bart Lievens, Sergio Álvarez-Pérez
    Microbial Ecology.2023; 86(1): 377.     CrossRef
  • Molecular identification of major bacteria in honey and the effect of microwave treatment on its microbial quality and antibacterial activity
    Ziad Jaradat, Batool Khataybeh, Abdull Majid Al Ghzawi, Qutaiba Ababneh, Anas Al Nabusli
    AIMS Agriculture and Food.2022; 7(3): 594.     CrossRef
  • Collection Time, Location, and Mosquito Species Have Distinct Impacts on the Mosquito Microbiota
    Daniel W. Pérez-Ramos, Martina M. Ramos, Kyle C. Payne, Bryan V. Giordano, Eric P. Caragata
    Frontiers in Tropical Diseases.2022;[Epub]     CrossRef
  • Potential effects of nectar microbes on pollinator health
    Valerie N. Martin, Robert N. Schaeffer, Tadashi Fukami
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  • Reconstructing the ecosystem context of a species: Honey-borne DNA reveals the roles of the honeybee
    Helena Kristiina Wirta, Mohammad Bahram, Kirsten Miller, Tomas Roslin, Eero Vesterinen, Wolfgang Blenau
    PLOS ONE.2022; 17(7): e0268250.     CrossRef
  • The distinctive roles played by the superoxide dismutases of the extremophile Acinetobacter sp. Ver3
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    Scientific Reports.2022;[Epub]     CrossRef
  • Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma
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    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Evolutionarily stable gene clusters shed light on the common grounds of pathogenicity in the Acinetobacter calcoaceticus-baumannii complex
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    Frontiers in Ecology and Evolution.2022;[Epub]     CrossRef
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    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Nitrogen Assimilation Varies Among Clades of Nectar- and Insect-Associated Acinetobacters
    Sergio Álvarez-Pérez, Kaoru Tsuji, Marion Donald, Ado Van Assche, Rachel L. Vannette, Carlos M. Herrera, Hans Jacquemyn, Tadashi Fukami, Bart Lievens
    Microbial Ecology.2021; 81(4): 990.     CrossRef
  • Effects of pollen and nectar inoculation by yeasts, bacteria or both on bumblebee colony development
    María I. Pozo, Toon Mariën, Gaby van Kemenade, Felix Wäckers, Hans Jacquemyn
    Oecologia.2021; 195(3): 689.     CrossRef
  • Structural diversity and functional variability of gut microbial communities associated with honey bees
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    Microbial Pathogenesis.2020; 138: 103793.     CrossRef
  • Different Dynamics of Bacterial and Fungal Communities in Hive-Stored Bee Bread and Their Possible Roles: A Case Study from Two Commercial Honey Bees in China
    Terd Disayathanoowat, HuanYuan Li, Natapon Supapimon, Nakarin Suwannarach, Saisamorn Lumyong, Panuwan Chantawannakul, Jun Guo
    Microorganisms.2020; 8(2): 264.     CrossRef
  • Abundance of mobile genetic elements in an Acinetobacter lwoffii strain isolated from Transylvanian honey sample
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    Scientific Reports.2020;[Epub]     CrossRef
  • Microbiota comparison in the intestine of juvenile Chinese mitten crab Eriocheir sinensis fed different diets
    Yunfei Sun, Wenfeng Han, Jian Liu, Feng Liu, Yongxu Cheng
    Aquaculture.2020; 515: 734518.     CrossRef
  • Acinetobacter baumannii NCIMB8209: a Rare Environmental Strain Displaying Extensive Insertion Sequence-Mediated Genome Remodeling Resulting in the Loss of Exposed Cell Structures and Defensive Mechanisms
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    mSphere.2020;[Epub]     CrossRef
  • Acinetobacter Strain KUO11TH, a Unique Organism Related to Acinetobacter pittii and Isolated from the Skin Mucus of Healthy Bighead Catfish and Its Efficacy Against Several Fish Pathogens
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    Microorganisms.2019; 7(11): 549.     CrossRef
  • Probiotic Effects of a Novel Strain, Acinetobacter KU011TH, on the Growth Performance, Immune Responses, and Resistance against Aeromonas hydrophila of Bighead Catfish (Clarias macrocephalus Günther, 1864)
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    Microorganisms.2019; 7(12): 613.     CrossRef
  • Phylogenetic signal in phenotypic traits related to carbon source assimilation and chemical sensitivity in Acinetobacter species
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    Applied Microbiology and Biotechnology.2017; 101(1): 367.     CrossRef
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    International Journal of Systematic and Evolutionary Microbiology.2017; 67(4): 806.     CrossRef
  • Relative abundance of deformed wing virus, Varroa destructor virus 1, and their recombinants in honey bees (Apis mellifera) assessed by kmer analysis of public RNA-Seq data
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    Journal of Invertebrate Pathology.2017; 149: 44.     CrossRef
  • Reservoirs of Non-baumannii Acinetobacter Species
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    Frontiers in Microbiology.2016;[Epub]     CrossRef
  • Acinetobacter equi sp. nov., isolated from horse faeces
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  • List of new names and new combinations previously effectively, but not validly, published
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Research Support, Non-U.S. Gov'ts
Paenibacillus cucumis sp. nov. Isolated from Greenhouse Soil
Jae-Hyung Ahn , Byoung-chan Kim , Byung-Yong Kim , Soo-Jin Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
J. Microbiol. 2014;52(6):460-464.   Published online May 29, 2014
DOI: https://doi.org/10.1007/s12275-014-4071-7
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AbstractAbstract PDF
Strain CO 4-7T was isolated from greenhouse soil used for cultivation of cucumbers in Korea. The 16S rRNA gene sequence of strain CO 4-7T showed the highest sequence similarity with Paenibacillus contaminans CKOBP-6T (94.2%) among the type strains. Strain CO 4-7T was a strictly aerobic, Gram-staining-positive, endospore-forming, and motile rodshaped bacterium. Strain CO 4-7T grew at 10–45°C (optimum, 30°C), at pH 6.0–7.5 (optimum, pH 6.5) and in the presence of 0–5% NaCl (optimum, 0.5%). The DNA G+C content of strain CO 4-7T was 48.5 mol%. It contained MK-7 as the major isoprenoid quinone and anteiso-C15:0 (51.8%), C16:0 (12.7%), and iso-C16:0 (8.6%) as the major fatty acids. The cell wall contained meso-diaminopimelic acid. Based on evidence from our polyphasic taxonomic study, it was concluded that strain CO 4-7T should be classified as a novel species of the genus Paenibacillus, for which, the name Paenibacillus cucumis sp. nov. is proposed. The type strain is CO 4-7T (=KACC 17444T=JCM 19515T).

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    Lifang Yuan, Hang Jiang, Xilong Jiang, Tinggang Li, Ping Lu, Xiangtian Yin, Yanfeng Wei
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Siphonobacter intestinalis sp. nov., a bacterium isolated from the feces of Pseudorhynchus japonicus
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    Journal of Microbiology.2016; 54(11): 709.     CrossRef
  • Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil
    Jae-Hyung Ahn, Byoung-chan Kim, Soo-Jin Kim, Geun-Hey Lee, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
    Journal of Microbiology.2015; 53(10): 673.     CrossRef
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    Nidhi Gopal, Colin Hill, Paul R. Ross, Tom P. Beresford, Mark A. Fenelon, Paul D. Cotter
    Frontiers in Microbiology.2015;[Epub]     CrossRef
  • Mucilaginibacter ginsengisoli sp. nov., isolated from a ginseng-cultivated soil
    Jae-Hyung Ahn, Byoung-chan Kim, Jae-Ho Joa, Soo-Jin Kim, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
    International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_11): 3933.     CrossRef
Niabella terrae sp. nov. Isolated from Greenhouse Soil
Jae-Hyung Ahn , Eun-Hye Jo , Byung-Yong Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
J. Microbiol. 2013;51(6):731-735.   Published online December 19, 2013
DOI: https://doi.org/10.1007/s12275-013-3507-9
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AbstractAbstract PDF
An orange-colored bacterial strain, ICM 1-15T, was isolated from greenhouse soil. The 16S rRNA gene sequence of this strain showed the highest sequence similarity with Niabella ginsengisoli GR10-1T (95.2%) and Niabella yanshanensis CCBAU 05354T (95.0%) among the type strains. The strain ICM 1-15T was a strictly aerobic, Gram-negative, non-sporeforming, non-motile, flexirubin pigment-producing, short rod-shaped bacterium. The strain grew at 15–35°C (optimum, 25°C), at a pH of 5.0–8.5 (optimum, pH 6.5), and in the presence of 0–3% NaCl (optimum, 1%). The DNA G+C content of strain ICM 1-15T was 43.6 mol%. It contained MK-7 as the major isoprenoid quinone and iso-C15:0 (38.9%), iso-C15:1 G (20.3%), and iso-C17:0 3-OH (12.9%) as the major fatty acids. On the basis of evidence from our polyphasic taxonomic study, we concluded that strain ICM 1-15T should be classified within a novel species of the genus Niabella, for which the name Niabella terrae sp. nov. is proposed. The type strain is ICM 1-15T (=KACC 17443T =JCM 19502T).

Citations

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  • Niabella ginsenosidivorans sp. nov., isolated from compost
    Kwon-Jung Yi, Wan-Taek Im, Dong-Woon Kim, Qing Mei Liu, Soo-Ki Kim
    Journal of Microbiology.2015; 53(11): 762.     CrossRef
  • Effects of fluoroquinolone antibiotics on reactor performance and microbial community structure of a membrane bioreactor
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    Chemical Engineering Journal.2015; 280: 448.     CrossRef
NOTE] Mucilaginibacter ginsenosidivorax sp. nov., with Ginsenoside Converting Activity Isolated from Sediment
Jin-Kwang Kim , Tae-Eun Choi , Qing-Mei Liu , Hye-Yoon Park , Tae-Hoo Yi , Min-Ho Yoon , Sun-Chang Kim , Wan-Taek Im
J. Microbiol. 2013;51(3):394-399.   Published online June 28, 2013
DOI: https://doi.org/10.1007/s12275-013-2653-4
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AbstractAbstract PDF
A Gram-reaction-negative, strictly aerobic, non-motile, nonspore-forming, and rod-shaped bacterial strain designated KHI28T was isolated from sediment in Gapcheon (river) and its taxonomic position was investigated using a polyphasic approach. Strain KHI28T grew at 10–42°C and at pH 5.5–8.5 on R2A and nutrient agar without additional NaCl as a supplement. Strain KHI28T possessed β-glucosidase activity, which was responsible for its ability to transform ginsenosides Rb1 and Re (ones of the dominant active components of ginseng) to C-K and Rg2, respectively. On the basis of 16S rRNA gene sequence similarity, strain KHI28T was shown to belong to the family Sphingobacteriaceae and to be related to Mucilaginibacter dorajii DR-f4T (97.9% sequence similarity), M. polysacchareus DRP28T (97.3%), and M. lappiensis ANJLI2 T (97.2%). The G+C content of the genomic DNA was 45.8%. The predominant respiratory quinone was MK-7 and the major fatty acids were summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c), iso-C15:0 and C16:0. DNA and chemotaxonomic data supported the affiliation of strain KHI28T to the genus Mucilaginibacter. Strain KHI28T could be differentiated genotypically and phenotypically from the recognized species of the genus Mucilaginibacter. The isolate therefore represents a novel species, for which the name Mucilaginibacter ginsenosidivorax sp. nov. is proposed, with the type strain KHI28T (=KACC 14955T =LMG 25804T).
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